LOCUS E.coli 10775 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 762 a 639 c 912 g 591 t 7871 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GGU-U AAGC------ -GA------- ---------- ---------- 241 ---------- ---------- ---------- -----CUAAG CGUACACGG- ----UGGAUG 301 |CCC--UGG| CAG-UCAG-A G|gcgaug-- ---------- ----AAGGA| -CGUG(-CUA 361 AUC------) U|GCGAUAA- GCGUCGG|UA A-GGU--(-- ---------- ---------- 421 GAUAUGA)-- ACCGUUAUAA CCGGCGA-UU UCCGAAU-GG G--------- -----(GAAA 481 )CCC|AGUGU GU(UUCG-)A CACACU---- AUCAUUAACU GA-------- -(AUCC-A)- 541 --------UA GGUUAAUGAG G--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----cGAAC |CGGGGGAAC 841 UGA(AACA)U CUAAGUA--- -CCCCG---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA CC)GA-G-AU |UCC-CCCA- -GUAG-C(-G GCGA)GCGAA -CGGGGAGC- 961 -AGCCCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---gagccug aaucagugug uguguuagug gaaGCGUCU< ---------- ---------- 1261 ---------- ---------- ---------> (GGAA--)AG GCGC------ GC-|G(AUA) 1321 C--AGGG(UG ACAGC)CCCg ua--cacaaa aaugcacaug cugugagcuc g-<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >auGAGUAGG GCGGGA(--- --------ca 1561 cguggua)UC CUGUCUGAAU ----auGGGG G(GACCA-U) -CCUCCA--A GGCUA-AAUA 1621 ---CUCCUGA C-UGACCGAU AGUG-AA--- -CCAGUACC( -GUGA-)GGG ---AAA-GG- 1681 CG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC C(GGCGA--) GGGG------ ---------- ------AGUG AA--AAAGA- 1801 ACCUG-AAAC CGUG-UAC-G U-<------- ---------- ---------- ---------- 1861 ----->ACAA GCAGUGGGAG CACGC---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----uuag 2041 --)---GCGU GUGACUGC-G UACCUU(UU- GUAUA)AUGG |GUC-AGCGA CU-----UA- 2101 UAUUCUGUAG CAA--gguua a-cc---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------gaau a)-----ggg --gagc-cGA 2521 AGG-(-GAAA )--CCG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->AGUC U-(UAACU-) -G-GGCG--- -----UUAAG UUGCA-GGGU 2701 AUA-GACCCG AA-ACCCG-G UG-AUCUAGC CAU-GGG-CA GGUUGAA--- G-GU--UG-G 2761 G(-------- ---------- ---------- ---------- -----uaac) ACUAACUGGA 2821 GGACCGAA-C CGAC-UAAU( GUUGAAA-A) AUUA-GCGGA --UGACUUG- UGGCUGG-GG 2881 GU(G-AAAG) GCC-AAUC-A A-ACCGGGAG AUAGCU-GGU UCUCC--CCG AA-AGC-UAU 2941 (-UUAG)GUA GC-GC-CUCG UGAA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->UU CAU|-CUCCG 3061 G|GGGUAG|A GCACUGU-UU CG-gca--ag gggguc--(a uccc----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gac uua-cc-aac 3301 cCG--AU-GC AAACUGCG-- AAUA|-CCGG -A-G--AAUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -UUA--UC-A -CGGG-AGAC ACACG--GC- GG-GU(-GCU 3481 AAC)GUCCGU CG-UG----A AGAGGG(AAA -CAA)CCC-A GACCG-C-CA -GC-UAA--- 3541 --GGU-CCCA -AAGUCA-U- GGUUAAGUG- ---------- GGAAACGAU- GUGGGAAGGC 3601 C-C------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGACA-GCCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-U GGC(UUAGAA 3781 GC-A)-GCCA -UCAU|U(U- AA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCG<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGU-CG-G -CC-UGC|-G CGGAAGAU-- ---------- ---------- ----GUAACG 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAACCA UGC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCU| G--C-GG|CA Gcgacgc--- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 uau---)--- -gcguug-UU -G-----GGU AGGGG-AG|- CG-UUCUGUA A---GCCUGC 4501 G--------A AGGUG-UGCU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GG CAU--GCU-G G|AGGU---| AUCAGAAGUG CGAAUGC-UG 4681 AC|AUAAGUA -ACGA-UAA- AGC-GG-GU- (gaaaa---- ---------- ---------- 4741 ---------- -----)-G-C CCGCU-|CGC C-GGAA-GAC CAA--GGGUU -|----CCUG 4801 UCCAA---CG ---------- ----(--UUA AU)C-G|-GG GCAGGG---- ---------- 4861 ---UGAGU-- -CGACCCCUA A-G-G-C--- GAGGCC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GGC---G UA---G-UCG AU-GGGAAA- CAGG(----- ---------- ---------- 5041 ---------- --uuaauauu ----)CCUGU |---AC|UUG G--UGUUACU |GC<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-G AAGGGGG-GA CGGAGAAGGC UAUGUUG--G 5461 CCGGG(CGAC GGUUGU)CCC GGU|UUAAGC GUGUAGGC|U GGUUUUCCAG G(CAAAU)CC 5521 |GGAAAAUCA AGGCUGAGGC GUGAUGACGA GGCAC(UACG )GUGCUGAAG CAACAAAUGC 5581 CC<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->UG CUUCCAGGAA ----AA-GCC UCU<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>AAG CAUCAGGUAA CAUCAA---- -AUCGUA|CC 6481 C--CAAACC- -(GACACA)G G|UGGUC-AG GUA-(GAG-A A-----)-UA CCAAGGCGC| 6541 |--UUGAG-A G--AACUCGG -GUGA-AGGA ACUAGGCAAA AUGGUG-CCG UAAC(UUCG- 6601 )GGAGAA-GG CAC|GCUGAU AUGUAGGUGA GGUCC(--CU CGC)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->GGAUGG AGCUGAAAUC 6781 -AGU|C(GAA )G--AUACCA GCUGGCUG|C AA---CUG-U UU(AUUAA)A AA-CACA-GC 6841 ACUGUG|CA- -AACAC---- ---------- (--GAAA--- ------)--- ---------- 6901 GUGGACGUA- UAC-GGUGUG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CCGGAA-GGU UAAUUG-AU- 7021 --GGGGUUAG C-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------G CAA)GCGAAG CUCU--UGAU C-GAAGCC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCCGU-(AA CUAUA)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGGG(-U AAGU-)UCCG AC|CU-GCAC GAAUGGCGUA A-UGAUGGCC 7261 AG-------- ---------- -------GCU GUCUCCACCC GAGA-CU-CA ----GUGAAA 7321 UU|G|AACUC GC-UG(U-GA AGAUG)CAGU GUA----CCC GCGGCAAGAC GGAAAG-ACC 7381 CCGUGA-|-A CCUUU--ACU AU|--A-GCU UGA--CACU| <--------- ---------- 7441 ---------- ---------- --->GAACA- UU-----GAG -CCUUGAUG- UGU---AGGA 7501 UAGGUGGGA- -GGCUUU-GA A-GUGUGGAC --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----GCC A)-GUCUG-C AUG--GAGCC 7681 GACCUUGAAA UACCACC|c- ----uUUAA- U-G-U-UUGA UGUU-CUAA- -CGUUGA--- 7741 CCCG-(---U AAUC)-CGGG ---------- ---------- ---------- ---UUGCG<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC AGUGU-C-UG -GUG-GG-UA GUUUGACUG( 8161 GGG)CG-GU- C|UCCUCC(- --------UA AAGAGUAAC- )GGAG-GA|G |C|ACGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UUG 8401 -GC|--UAA- UCCUGG<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (ucggaca-- )----UCAGG AG-------- ---------- 8701 ---------- ---------- ---------- ---GUUA|GU (G|CAAUG)G CAU-AAG-CC 8761 A-GC-UUGAC UGCGA-GCG( -ugacgg--- )CGCGA-GCA G--------- ---------- 8821 ---------- --------GU GC-------- ---(GAAA-- -)-------- ----GCA-GG 8881 U|---CAUAG UGAUC-CGGU GG-U------ ---------- UCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GAAUGG AA)GG|GCCA 9001 UCGCUCAAC- |GGAUAAAAG GUACUC|CGG G|GAUAACAG |G-CUG-A-U ACCGCCCAAG 9061 AG(U--UCAU )AUCGACGGC --GGUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGGG GC-UG(--AA -GU)AGGUCC CAAG-GGU|A UGGC(UGUUC )GCCAU-UUA 9181 A--AGUGGU- --ACGCGAGC UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUCCCUAU 9241 CU|GCCGU-G GG|C|<---- ---------- ---------- ---------- ---------- 9301 >GCUGG-AGA AC-UGA-GGG GGG-CUG-CU CC--(UAGU- AC(-GAGA)G GACC-)GGAG 9361 U--GG-<--- ---------- ---------- -------->A CGCAUCA-CU GGUGUUCGGG 9421 U|-UGU-CAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUG-GCACUG CCCG--GUAG CUAA-AUGCG GAA------- ---------- -------GAG 9601 ---------- -AUAAGUGCU (GAAAGC--A U-CUA)A-GC -AC-GAAACU UG-CCCCGAG 9661 AUGAG--U-- -UCUCC-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>CU| GACCCU(UUA )AGGGUC-cu gaaggAA|CG 9961 UUG(AAGACG A--)CGACGU U--------- ---------- ---------- ------GAUA 10021 G|GCCGGGUG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAGC GCA------- ---------- --------(- ---------- 10141 ---------- -------GCG A)UGCGU--- ---------- ---------- ---------- 10201 ----UGAGCU A|A|CCGGUA CUAAU-g--- ---------- ---------- -----aaccg 10261 u--------- ---------- ---------- ---------- ---GAG---- ---GCUUAAC 10321 Cuu-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (1)-EUKARY 10775 bp RNA RNA 27-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......-.. .......-.. .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... ......-... .......... ..-....... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .-........ .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......--. .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .....---.. .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 --........ .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .-........ 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .-........ 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .....-.... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .....-.... ..)....... .......... .......... 4861 .......... .......... .-........ .......... ....------ ------.... 4921 .......... .......... .......... .......... .......... ........-- 4981 .-........ .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... ......-... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... ......-... .......... 6481 .......... .......... .......... .......... .-----.... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .-......-- ------.... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... ......-... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... ...-...... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......-.. -......... .......... 8161 .......... .......... .......... .......... .......... .......-.. 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ..-------- ---......- -.-------- ----...... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... ..-....... ...-...... .......... ...-...... .......... 9361 .....-.... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... ....-..... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .|........ .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (2)-DICTYO 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.D.dis.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Dictyostelium discoideum. ORGANISM Mitochondria Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D16466 Dictyostelium discoideum mitochondrial LSU rRNA Yoshimasa Tanaka, University of Tsukuba, Japan Unpublished Robin, Yoshimasa Tanaka says it's O.K. to send you the Dictyostelium discoideum mitochondrial LSU rRNA sequence, so here it is. Mike This sequence has since been published. BASE COUNT 1061 a 370 c 618 g 823 t 7903 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~agu-a agag------ ---------- ---------- ---------- 241 ---------- ---------- ---------- -----aaaaA UGUUUAUAA- ----CGGAUC 301 |UCU--AUG| CAA-AUAA-g a|aaa----- ---------- -----agga| -cgua(-cga 361 aug------) a|acgaaag- guuauag|gg a-aaau-(-- ----auaaaa aagaguuagc 421 aauagca)-- auug-aagau cuauaaa-ua uccgaag-gg ---------- -----(aga- 481 )-cc|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<-aagaa aaagaa---- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----gAAAC |GCAGUGAAG 841 UGA(AACA)U CUUAGUA--- -ACUGU---- ---------- ---------- ---AGGAAAA 901 AAAAUC(-AA AA)GA-G-AU |GCG-GUAA- -GUAG-U(-G GUGA)GCGAA -AGCCGAgg- 961 -agagua<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 --aaaguaga ccauuagaag aaaacugaag aaacuaggu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaaa-)uc caag------ GC-|A(GAA) 1321 U--AAGG(UG AAAGU)CCAg ua--agguaa gggacuaaug guaa------ ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >agAAGUAAA ACGAAG(--- --------aa 1561 aggagga)AU UUGUUUGAAA ----AAUGGG G(GCCCA-C) -CCCCAA--A CUCAA-UAUA 1621 ---UGCUUAU U-UGACUGAU AGUG-AA--- -CAAGUACU( -GUGA-)AGG ---AAA-GA- 1681 UG-------- ---------- ---------- ---------- ---------- -------aaa 1741 aggaauauag a(aguua--) ucua------ ---------- ---uucAGUG AA--A-AGA- 1801 CCGUG-AAAU UGUA-AAC-A U-<------- ---------- ---------- ---------- 1861 ----g>auga gCAguuggag u-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (------uaa 2041 --)------- gugacaac-G UACCUU(UU- GUAUA)AUGG |GUC-AGCGA GU-----UA- 2101 AUAAAUcgua gca-agcuua a-ggu--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------agu a)----acua --uagg-cGC 2521 AGC-(-GAAA )--GCG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->uauc u-(uaaua-) -g-ggug--- uuucaagagu uac-A-UUUA 2701 UUA-GACCCG AA-ACCAA-G CG-AUCUAAU UAU-GAA-CA CGC-auu--- u-ua--uu-a 2761 u(-------- ---------- ---------- ---------- -----uuuu) auuuuaauuu 2821 G-GCGGAA-C CC-GUAACU( GUUGCAA-A) AGUU-UGGGA --UGAUUUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-GCUUGGUG AUAGCU-G-U UUUUU--ACG AA-AUC-UAU 2941 (-CUAG)GUA GA-AC-GGUG GUauaa AAU|-UUAUA 3061 G|AGGUAG|A GCACUGA-AU GG-uuc--aa c-------(c uaag----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ----gu---u 3301 AUU--AU-UU AAACUUCG-- AAUA|-CUAU -A-A---aua ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aauu-gA-C -CACU-AGGC AGACU--AU- GA-GC(-GCU 3481 AAG)GUCCAU AGgUC----U AAAGGG(AAA -CAG)CCC-A GAUUG-U-AA -GU-UAA--- 3541 --UGU-UCuu aaaUAAU-A- GUGU-AGUG- ---------- ucaaaggca- uggagaaagu 3601 g-a------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- uguua-AUUG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-A GGA(UUGGAA 3781 GC-G)-ACCA -UCUU|U(U- AA)A|GAAAG C(--GUAAAA )GC|-UCAC- CAAUUUGGC-GU-U -CU-CUA|-G CCAACAAU-- ---------- ---------- ----GUACAG 3961 GAACU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---caACAUU AU-------- ---------- ---------- ---------- 4081 -------|AC AGAA--ACU| A--C-AA|aa u--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 auaac-)--- --------au -u-----GGU AGUAA-AA|- UG-UUCCGUA U---AAUUGU 4501 G--------A AGUUA-ACUC (aagaa--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GA GAU--AAU-G G|AGUU---| AUCGGAAUUA AGAAUGC-UG 4681 AU|AUGAGUA -AUG--uua- AUA-AG-GU- (uaag----- ---------- ---------- 4741 ---------- -----)-A-C CUUAU-|CAC U-GAAA-AUU AGA--AG-UU -|----uccu 4801 aauaaa-aag ---------- ----(--gua ag)c-u|gau uaggg----- ---------- 4861 ---uuacg-- -CGAUCGCUA A-G-A-U--- uaauau-(-g aca------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--aua--aa cu---A-UCG AU-GCGCAua uaga(----- ---------- ---------- 5041 ---------- --uuaauaau ----)ucuaa |---cg|uuu u--uauugua |gu<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- uuuaauu-GA Cauguguauu u--------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- uaaauaauua uauuauacuu acauuauaga uuauuugaaa 5641 uauaaguuuu aaaaauagau uaaaaca>aa auauCUGUAA ---AAA-gau a--<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---uuuuaaa uaaaaa---- -AUCGUA|CU 6481 ---UAAACC- -(GACACU)G G|UUAAU-UG AUA-(GAA-U A-----)-UA UUAAAGUG-| 6541 |--UAGAA-U G--AAUGAUU -CUGA-AGGA ACUCGGCAAA AUAACU-CCG UAAC(UGCG- 6601 )GGAGAA-GG AGA|GCCuuu ---guu---- -----(guaa aa-)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ --aau--gaa 6781 -GGU|C(ACA )G--UAAAGA AGGGGUGG|C GA---CUG-U UU(AAUAA)A AA-CACA-GG 6841 AUUCUG|CA- -AAAUG---- ---------- (--GCAA--- ------)--- ---------- 6901 CAUGAUGUA- UAG-GGUCUG CGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUCCAA-GAG GAAGAG-GA- 7021 --GAACU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g caa)-----G GUUU--GAAU U-GAAGUC-| 7141 UG-AGUA-AA C-|GG-C|-G -GCUGU-(AA CUAUG)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGAG(-U AAUU-)UUCG AC|GC-GCAU GAAUGGUGUA A-CGACCUCC 7261 CC-------- ---------- -------ACU GUCUCCAGAA UCAC-UU-CG ----AUGAAA 7321 UU|G|AACUU UC-CG(U-GA AGAUG)CGGA AUA----UUA GCAGCUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUA--ACU UC|--A-CGC AUA--UAUU| <--------- ---------- 7441 ---------- ---------- --->GUGCA- AC-----AUU -UUUAAUUA- CGU---AGGA 7501 UACUUAUGa- -ugcuua-ug a-ucuuuugg --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> uuuuggccaa u)-uuaaa-g ga----ggcg 7681 -cuggUGAAA UAGUAAG|u- ---auAUUA- G-A-A-AAAU AGUA-Cuca- -a-------- 7741 -----(---- -aca)----- ---------- ---------- ---------- -------u<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAU AAUGU-A-UG -CCG-GG-UA GUUUGACUG( 8161 GGG)CG-GU- A|ACCUUC(- --------UA AAGAGUAAC- )GAAG-GU|G |U|AUAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAA 8401 -AC|--UCA- AAAUAA<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (acugguuag )----UUAUU UG-------- ---------- 8701 ---------- ---------- ---------- ---GUGA|GU (G|UAAUG)G CAU-AAG-UU 8761 U-GC-UUGAC UGAAA-GAC( -cuacaa--- )GUCGA-UCA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GCAA-- -)-------- ----GUC-GA 8881 U|---CAUAG UGAUC-CAAU AG-U------ ---------- UCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)AG|GCUA 9001 UUGCU-AAC- |GGAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUA-G-U CACAUAUUAG 9061 AG(U--UCAU )AUCUGUUAU --GUGGUUCG GC-ACCUCGA UGUC|GG--C U|U|AACAC| 9121 AU-CC-cGGA Gu-UG(--AA -AA)AGuUUC CaAG-GGU|U GGGG(UGUUC )ACCCA-UUA 9181 A--AGUGUU- --ACAUGAGC UGGGUUUAAA AC|GU-C(GU GA)GACAGUU UGGUCCCUAU 9241 CU|ACUGU-U AA|A|<---- ---------- ---------- ---------- ---------- 9301 >aacga-aaa aa-u-u-AAA AUC-CUU-CC UU--(UAGU- AC(-GAGA)G GACU-)GAGG 9361 U--GG-<--- ---------- ---------- -------->G UCGAUCA-CU GGUGUAUUAA 9421 U|-UAU-UAU (aaca-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GUACCG UUAA--GUAG CUAC-AUCGA Aauauuaaua auauauagua uuauuaaGAG 9601 ---------- -AGAACUGCU (GAAAAA--A UAUUA)A-GU -AG-GAAACU UA-UUUU--- 9661 -agau--u-- -uuuuu-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- auaguca|GG 9961 UAA(AAGAUU A--)UUACUU U--------- ---------- ---------- ------GAUA 10021 G|GCUACAUA uagaaaugaa uaguaauaua auauaaaaau uugaaaaaau uuuuccauua 10081 auucuauaau uaaUGUGAUC UUA------- ---------- --------(- ---------- 10141 ---------- ------uuua u)UAAGA--- ---------- ---------- ---------- 10201 ----UUaGUA A|A|GUAGUA CUAAA-u--- ---------- ---------- ----auggau 10261 ---------- ---------- ---------- ---------- -----gacgu auuuuauuac 10321 u-------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.dis.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Dictyostelium discoideum. ORGANISM Mitochondria Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U21880 LOCUS DDU21880 1620 bp DNA INV 19-MAR-1995 DEFINITION Dictyostelium discoideum mitochondrion large subunit rRNA (rrn) gene, mitochondrial gene encoding mitochondrial rRNA, partial sequence. ACCESSION U21880 KEYWORDS . SOURCE slime mold. ORGANISM Mitochondrion Dictyostelium discoideum Eukaryotae; mitochondrial eukaryotes; Dictyosteliida; Dictyostelium. REFERENCE 1 (bases 1 to 1620) AUTHORS Wilczynska,Z., Barth,C. and Fisher,P.R. TITLE Partial genomic clone of Dictyostelium discoideum mitochondrial large subunit rRNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 1620) AUTHORS Fisher,P.R. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Paul R. Fisher, School of Microbiology, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia COMMENT NCBI gi: 717117 FEATURES Location/Qualifiers source 1..1620 /mitochondrion /strain="AX2" /organism="Dictyostelium discoideum" rRNA <1..>1620 /gene="rrn" /evidence=experimental /product="mitochondrial large subunit rRNA" BASE COUNT 580 a 225 c 342 g 473 t ORIGIN BASE COUNT 580 a 225 c 342 g 473 t 9155 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(-~~ ~~)~~~~-~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~-|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~G G(GCCCA-C) -CCCCAA--A CUCAA-UAUA 1621 ---UGCUUAU U-UGACUGAU AGUG-AA--- -CAAGUACU( -GUGA-)AGG ---AAA-GA- 1681 UG-------- ---------- ---------- ---------- ---------- -------aaa 1741 aggaauauag a(aguua--) ucua------ ---------- ---uucAGUG AA--A-AGA- 1801 CCGUG-AAAU UGUA-AAC-A U-<------- ---------- ---------- ---------- 1861 ---ga>uaga gCAguuggag u-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (------uaa 2041 --)------- gugacaac-G UACCUU(UU- GUAUA)AUGG |GUC-AGCGA GU-----UA- 2101 AUAAAUcgua gca-agcuua a-ggu--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------agu a)----acua --uagg-cgc 2521 ag--(-GAAA )---cg<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->guau cu(uaaua-) -g-gugu--- --uca-gag- uac-A--UUA 2701 UUA-GA-CCG AA-AC-AA-G CG-AUCUAAU UAU-GAA-CA CGC-auu--- u-ua--uu-a 2761 u(-------- ---------- ---------- ---------- -----uuuu) auuuuaauuu 2821 G-GCGGAA-C CC-GUAACU( GUUGCAA-A) AGUU-UGGGA --UGAUUUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-GCUUGGUG AUAGCU-G-U UUUUU--ACG AA-AUC-UAU 2941 (-CUAG)GUA GA-AC-GGUG GUauaa AAU|-UUAUA 3061 G|AGGUAG|A GCACUGA-AU GG-Uuc--aa c-------(c uaag----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ----gu---u 3301 AUU--AU-UU AAACUUCG-- AAUA|-cuau -a-a---aua ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aauu-gA-C -CACU-AGGC AGACU--AU- GA-GC(-GCU 3481 AAG)GUCCAU AGgUC----U AAAGGG(AAA -CAG)CCC-A GAUUG-U-AA -GU-UAA--- 3541 --UGU-UCuu aaaUAAU-A- GUGU-AGUG- ---------- ucaaaggca- uggagaaagu 3601 g-a------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- uguua-AUUG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-A GGA(UUGGAA 3781 GC-G)-ACCA -UCUU|U(U- AA)A|GAAAG C(--GUAAAA )GC|-UCAC- CAAUUUGGC-GU-U -CU-CUA|-G CCAACAAU-- ---------- ---------- ----GUACAG 3961 GAACU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---caACAUU AU-------- ---------- ---------- ---------- 4081 -------|AC AGAA--ACU| A--C-AA|aa u--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 auaac-)--- --------au -u-----GGU AGUAA-AA|- UG-UUCCGUA U---AAUUGU 4501 G--------A AGUUA-ACUC (-aga---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GA GAU---AU-G G|AGUU---| AUCGGAAUUA AGAAUGC-UG 4681 AU|AUGAGUA -AUG--uua- AUA-AG-GU- (uaag----- ---------- ---------- 4741 ---------- -----)-A-C CUUAU-|CAC U-GAAA-AUU AGG--AGGUU -|----uccu 4801 uauuaaaaag ---------- ----(--gua ag)c-u|gau uaggg----- ---------- 4861 ---uuacg-- -CGAUCGCUA A-G-A-U--- uaauau-(-g aca------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--aua--aa cu---A-UCG AU-GCGCAua uaga(----- ---------- ---------- 5041 ---------- --uuaauaau ----)ucuaa |---cg|uuu u-uuauugua |gu<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- uuuaauu-GA Cauguguauu u--------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- uaaauaauua uauuauacuu acauuauaga uuauuugaaa 5641 uauaaguuuu aaaaauagau uaaaaca>aa auauCUGUAA ---AAA-gau a--<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---uuuuaaa uaaaaa---- -AUCGUA|CU 6481 ---UAAACC- -(GACACU)G G|UUAAU-UG AUA-(GAA-U A-----)-UA UUAAGGUG-| 6541 |--UAGAA-U G--AAUGAUU -CUGA-AGGA ACUCGGCAAA AUAACU-CCG UAAC(UGCG- 6601 )GGAGAA-GG AGA|GCCuuu ---guu---- -----(guaa aa-)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ --aau--gaa 6781 -GGU|C(ACA )G--UAAAGA AGGGGUGG|C GA---CUG-U UU(AAUAA)A AA-CACA-GG 6841 AUUCUG|CA- -AAAUG---- ---------- (--GCAA--- ------)--- ---------- 6901 CAUGAUGUA- UAG-GGUCUG CGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUCCAA-GAG GAAGAG-GA- 7021 --GAACU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g caa)-----G GUUU--GAAU U-GAAGUC-| 7141 UG-AGUA-AA C-|GG-C|-- -GCUGU-(AA CUAUG)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGAG(-U AAUU-)UUCG AC|GC-GCAU GAAUGGUGUG AACGACCUCC 7261 CC-------- ---------- -------ACU GUCUCCAGAA UCAC-UU-CG ----AUGAAA 7321 UU|G|AAC-U UC-CG(U-GA AGAUG)CGGA AUAuuucaUA GCAGCCUGAC GGA-AG-A-C 7381 CUAUGC-|-A CCUUA--ACU UC|--A-CGC A~~~~~~~~| <~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7741 ~~~~~(~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 8161 ~~~)~~~~~~ ~|~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~|~ |~|~~~~-|< 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ 8401 ~~~|~~~~~~ ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ (~|~~~~~)~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 8881 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~|~~~~ 9001 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~-~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (2)-EUGLEN 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.T.borre 10775 bp RNA RNA 14-APR-1995 DEFINITION Kinetoplast Trypanoplasma borreli.; Putative cryptogene, G-rich region; Cytochrome C oxidase subunit III; Large subunit ribosomal RNA; 5' pre-edited region of CYb mRNA; 3' pre-edited region of CYb mRNA; Pre-edited region of pan-edited mRNA for RPS12; apocytochrome b, non-edited part of mRNA. ACCESSION U14181 KEYWORDS Putative cryptogene, G-rich region; Cytochrome C oxidase subunit III; Large subunit ribosomal RNA; 5' pre-edited region of CYb mRNA; 3' pre-edited region of CYb mRNA; Pre-edited region of pan-edited mRNA for RPS12; apocytochrome b, non-edited part of mRNA. SOURCE Kinetoplast Trypanoplasma borreli. ORGANISM Kinetoplast Trypanoplasma borreli. REFERENCE 1 (bases 1 to 4348) AUTHORS Maslov,D.A. and Simpson,L. TITLE cryptobiid kinetoplastid protozoan Trypanoplasma borreli RNA editing and mitochondrial genomic organization in the JOURNAL Mol. Cell. Biol. 14 (12), 8174-8182 (1994) STANDARD No information REFERENCE 2 (bases 1 to 4348) AUTHORS Maslov,D.A. TITLE Direct Submission JOURNAL Submitted (31-AUG-1994) Dmitri A. Maslov, Biology, University of California at Los Angeles, 405 Hilgard Ave, Los Angeles, CA 90024-1606, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U14181 BASE COUNT 482 a 115 c 70 g 634 t 9474 others ORIGIN 1 |~~~~~~~~~ gaaaauuuga uaacauuuuu auuuuacuau uucuguauuu uaacuuauua 61 uauuaauuua accuuuaaaa uuuuuaucuu aaaauuuuau aaacuuuacu ucuuaaaaaa 121 uauauuuaaa uuuaaauuuu ggaguuuuuu uuaaucacua auauuuucua auuuuauauu 181 uuuauuuu-- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )--------- --(------) ---------- ---------- ---------- 2701 ---------- ---------- ---uuaauua uuu-aca-ac uuu------- ---------- 2761 -(-------- ---------- ---------- ---------- -----uaaa) ---------- 2821 --aaau-A-C UG-UAUAUA( GUUACAA-U) UAUUA-CACU --uaaaaau- uuaauuc-cu 2881 uu(u-acau) agc------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 aacuaacaac uuaauuuuau a-cuauua-a aauaacuugu au>uaauu-u cau(auaaa- 3781 -u-u)-uuga -uuuu|u(u- ug)-|cuauu u(--uuuaaa )aa|-aau-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuauuuau auacacuuuu -uuau-uaa- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------u uuauucauaa aaa>------ ---------- 6781 ------(--- )--------- uauuuaaa|u cc---aAG-U UU(AUUUA)A UG-CUUu-uc 6841 uauuug|--- ---------- ---------- (-uaauuua- ------)--- ---------- 6901 ---------- uaaauuuuu- uuuugu- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- UG-UAGCUAA 7201 AUA-AU-U-U |AUUAGC(-U AAUU-)ACUA AC|UU-guuc ca--cuaa-u u-aauauuua 7261 u--------- ---------- -------au- -auauuauac uauu-au-ac auu-aaauaa 7321 cu|a|auacg ua-uu(u--a aua-u)aaua uuu----AUA CAUGUUAAAG GGCAAG-UCC 7381 UUU-UU-|-U ACUUU--ACA UU|--U-AAU UUU--A---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aaauu uucauauuau aaau------ 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---UA-A-AA -AUU-GU-AU GUUUGGUUG( 8161 GGA)UA-ACA U|AAUAUC(- --------UU AUUAUAUUA- )UUUA-AA|a |a|uaga-|< 8221 ucuuaauuau uagca----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uUAUAUAAG UCUUAA|AAA G|GUUAACAA |G-CAU-a-c ---------- 9061 --(u-uugua )--------- -----uaAAU GU-GUUUCUU CGUC|UA--C U|U|AUGUA| 9121 uuauu-aauu a----(-uua aua)---uac uu---aaa|A AAGU(UGUUC )ACUUU-ucu 9181 a---UACAU- --UCAUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUUUUAAUAU 9241 UU|ACUUA-U UU|U|<---- ---------- ---------- ------ucuu cuuacaaac- 9301 >--------- ---------- ----ucc-gu acu-(UAGU- AC(-GAGA)G GACU-)auau 9361 u--uu-- ---------- ---------- 9421 -|-------- (-----) 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.oncop 10775 bp RNA RNA 11-JAN-191 DEFINITION Kinetoplast Crithidia oncopelti. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Crithidia oncopelti. ORGANISM Kinetoplast Crithidia oncopelti. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X51736 ID MICO12SR standard; DNA; ORG; 1200 BP. XX AC X51736; XX DT 25-FEB-1991 (Rel. 27; Last updated; Version 3) DT 05-JUN-1990 (Rel. 24; Created) XX DE Crithidia oncopelti kinetoplast 12S ribosomal RNA XX KW 12S ribosomal RNA; ribosomal RNA. XX OS Crithidia oncopelti OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; OC Kinetoplastida; Trypanosomatina; Trypanosomatidae. XX OG Kinetoplast XX RN [1] RB 1-1200 RA Maslov D.A.; RT ; RL Submitted (16-FEB-1990) to the EMBL Data Library by: RL Maslov D.A., Dept. of Mol. Bio., Faculty of Biology, M. V. RL Lomonosov State University, 119899 Moscow, U S S R. XX RN [2] RB 1-1200 RA Horvath A., Maslov D.A., Kolesnikov A.A.; RT "The nucleotide sequence of the 12S ribosomal RNA gene from RT kinetoplast DNA of the protozoan Crithidia oncopelti."; RL Nucleic Acids Res. 18:2811-2811(1990). XX CC *source: strain=S-068; XX FH Key Location/Qualifiers FH FT rRNA 57..1180 FT /note="12S ribosomal RNA" XX SQ Sequence 1200 BP; 502 A; 85 C; 109 G; 504 T; 0 other; BASE COUNT 473 a 82 c 101 g 468 t 9651 others ORIGIN 1 |~~~~~~~~~ aauuaaucau auuuuauaaa uuuauaguaa agaaguauua uuauauuuau 61 uauuuauauu uuguauuuua auuuauuuaa acauuuauag uauaaauugu uauauauuua 121 aauuuuaaau uuguuguuuu auauuuaguu ucauauuuua guuauaauaa ccaaucauau 181 c--------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 --a-aaaucu -a-aaauu-u au-ugAACUG UUA-UAA-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuauu) ---------- 2821 --AUUU-U-U UG-UUUAAU( GUUUAAA-U) AUUUaACUA- --UUAAAGU- UACAGUU-Gu 2881 uc(u-auau) gua-ccua-a u-aaaaauag uaagauaauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaaaaaau aauuauuca- ---gcaauca aaugaauauu au>gaaaa-a ucu(aaaaa- 3781 -u-u)-aaau -uauu|-(-- -c)-|ugcua a(--aaaaua )aa|-uaa-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuuuuaaa aauauauaua -uguu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaauuuu uaa>------ ---------- 6781 ------(--- )--------- -UAUUUUA|A AA---GCG-U UU(AUUAA)A UG-CGUU-CG 6841 UCUAAG|--- ---------- ---------- (-auuauua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUA- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(UUU)- AG-UAGCAUA 7201 AUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUGAAG 7261 UU-------- ---------- -------Aa- -aacaaacaa aaua-ac-ca au--aaauua 7321 aa|a|uaaaa au-uu(u--a aua-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uuaa u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA UUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauaa uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(U--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(---u aa-)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UG|U|<---- ---------- ---------- ------auua aaaguuaaa- 9301 >--------- ---------- ----AUC-AA AAU-(UAGU- AC(-GCAA)G GAUC-)UUUU 9361 ---AU-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.fasci 10775 bp RNA RNA ~?~???? DEFINITION Kinetoplast Crithidia fasciculata. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Crithidia fasciculata. ORGANISM Kinetoplast Crithidia fasciculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X02548 Phylo:Mitochondria,Kinetoplast,Crithidia BASE COUNT 462 a 74 c 110 g 495 t 9634 others ORIGIN 1 |~~~~~~~~~ uuuaucauuu auauuaaaaa auaauaaggu cgcuauauau uguaa--aag 61 uguuaauuua aauuuugauu auguuuuuau uuaauuuuau uuauacauau uaauuauaau 121 auauuuaaau auuaaauuug uuguuuuaua uuuaguuuaa aauuuaauau auaauuauaa 181 acaauugu-- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----cauuu aa-aguuu-u aa-ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----ugaua) ---------- 2821 --UUUU-U-U AG-UUUAAU( GUUUAAA-U) AUUUaUCUA- --AUAAUGU- UACAGUU-Gu 2881 uc(u-auau) gua-ccaa-u a-agaaauag uaaaauuauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 uuuaauaaau aguuauuuga a-uauuauau uacaaauauu au>gaagu-u uuu(aaaaa- 3781 -u-u)-aaau -uuuu|a(a- uc)-|uauua u(--aauaua )au|-uug-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -auuuuuaaa aauacauaua -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uua>------ ---------- 6781 ------(--- )--------- -AGUUUCA|A AA---GCG-U UU(AUUAA)A UG-CGCU-UG 6841 UCUAAG|--- ---------- ---------- (-uuuuuua- ------)--- ---------- 6901 ---------- UUUAAGAUA- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUA)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|AU-guuc ca-cAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Au- -aacaaucaa agua-aa-ua au--aaauua 7321 aa|a|uaaaa au-uu(u--a aaa-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-auuuaa u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UU AUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauacuua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(--aa aaa)------ -------a|U UGAU(UGUUC )AUCAA-aaa 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U AG|U|<---- ---------- ---------- ------uaau uuaauuaagu 9301 >--------- ---------- ----UUU-AA UAg-(UAGU- AC(-GCAA)G GAUU-)UAUU 9361 A--U~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.maria 10775 bp RNA RNA 11-JUN-1994 DEFINITION Kinetoplast Herpetomonas mariadeanei.; . ACCESSION U01009 KEYWORDS . SOURCE Kinetoplast Herpetomonas mariadeanei. ORGANISM Kinetoplast Herpetomonas mariadeanei. REFERENCE 1 (bases 1 to 1024) AUTHORS Landweber,L.F. and Gilbert,W. TITLE phenomenon Phylogenetic analysis of RNA editing: a primitive genetic JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 918-921 (1994) STANDARD No information REFERENCE 2 (bases 1 to 1024) AUTHORS Landweber,L. TITLE Direct Submission JOURNAL Submitted (23-AUG-1993) Laura Landweber, Cellular and Developmental Biology, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, Massachusetts 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U01009 BASE COUNT 455 a 85 c 94 g 385 t 9756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~u guuguuuuau auuuaguuua auauauuuuu aaaauauuaa cacaugauau 181 annnnnaagu ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 ------aucu aa-aauuu-c u--ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuuau) ---------- 2821 --AUUU-U-U UA-UUUAAU( GUUUAAA-U) AUUUaAUUAu ugAUGcuau- cACAGUU-gu 2881 uu(u-auau) guc-ccua-a c-aaaaauag uaa-gagccu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaauaaau aauuauu--- caaauaauau uaugaauauu au>gaaaa-u uau(aaaaa- 3781 -u-u)-aua- -auau|a(u- aa)u|ccaau a---auaugu -au--uacua aaa------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ----ua-uau 5701 ----uu---- aauugaauau uaaaaguacc aauuuaauuu g-aaauuuau aacaaauaua 5761 cguuuuaauu auggaauuaa aauaaaaa-- ----gaauaa -a-aa-uauu uuaauauuua 5821 auauuuguua accaaaaagu aac-cauaaa gaa---uaau aaguauua-- -uuauuaaaa 5881 auauaauua- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ------uaaa aauacaaaaa -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AAUUUCA|A AA---GCA-U UU(AUUAA)A UG-UGCC-UG 6841 UCUAAG|--- ---------- ---------- (-uaaaaua- ------)--- ---------- 6901 ---------- UUUAAGAUA- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUC)A AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Aa- -aacaaacaa cgua-ac-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aua-a)aaac caA----AAA AUUAAAAUAG GGCAAG--CC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaau-a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA AAUAUAUAG- )AAAA-AG|a |-|-----|< 8221 gcuauaauua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUAC| 9121 u--------- -----(-aau aaa)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GUAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U AU|A|<---- ---------- ---------- ------aaau aauauuaaaa 9301 >--------- ---------- ----UCA-AA -Au-(UAGU- AC(-GCAA)G GAUC-)U-uu 9361 a--u~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.musca 10775 bp RNA RNA 29-JUN-1994 DEFINITION Kinetoplast Herpetomonas muscarum.; . ACCESSION U01011 KEYWORDS . SOURCE Kinetoplast Herpetomonas muscarum. ORGANISM Kinetoplast Herpetomonas muscarum. REFERENCE 1 (bases 1 to 1004) AUTHORS Landweber,L.F. and Gilbert,W. TITLE Phylogenetic analysis of RNA editing: a primitive genetic phenomenon JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 918-921 (1994) STANDARD No information REFERENCE 2 (bases 1 to 1004) AUTHORS Landweber,L. TITLE Direct Submission JOURNAL Submitted (23-AUG-1993) Laura Landweber, Cellular and Developmental Biology, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U01011 BASE COUNT 441 a 75 c 103 g 380 t 9776 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ uguuguuuua uauuuaguuu unnnuuuaua annaacaaaa 181 uuuaaaauaa ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----aauuu aa-aguuu-c u--ugAACUG UUA-UAU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaua) ---------- 2821 --UUUU-A-U AG-UUUAAU( GUUUAAA-U) AUUUaAUUA- --AUGAUGAG GACAGUU-Gu 2881 uc(u-auau) gua-ccaa-a g-aaaaauag uaaaauaau- g--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------a 3721 auuaauaaau aauuauuuau a-uaa---aa aauaaauauu au>gaaaa-a uau(aaaaa- 3781 -u-u)-aua- --uuu|u(g- ua)a|gccaa u---aauaau ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ------aaau 5701 aaaaauaaac aauuuuaauu gaauauuaaa auuacaaauu uaauuuguac uuaguaaaau 5761 auauuaaaau acugguauau auauauag-- ----c-auaa u----g---u uuaauauuua 5821 auauuuguua aauaaaaagu aac-caaaau aaa---uuaa aagaauuauu guuauauaua 5881 u--------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -auuuuuaaa aauacaaaua -uguu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AAUUUUA|A AU---GCG-U UU(AUUAA)A UG-CGCU-CG 6841 UCUAAG|--- ---------- ---------- (-aauaaua- ------)--- ---------- 6901 ---------- UUUAAGACU- aUUCUG- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Aa- -aacaaacaa agua-au-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aua-a)aaau caA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uaa--a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA GUUAUAUAG- )CAAA-AG|a |-|-----|< 8221 acuauaauua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(-aa- -aa)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GCAAU- --UCGUUAGU UGGGUU-AAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAG-U UU|-|<---- ---------- ---------- ----auauaa aaguuucaga 9301 >--------- ---------- ------u-aa acaa(CAGU- AC(-GCAA)G GAUgc)auuu 9361 a--u~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.samue 10775 bp RNA RNA 11-JUN-1994 DEFINITION Kinetoplast Herpetomonas samuelpessoai.; . ACCESSION U01012 KEYWORDS . SOURCE Kinetoplast Herpetomonas samuelpessoai. ORGANISM Kinetoplast Herpetomonas samuelpessoai. REFERENCE 1 (bases 1 to 1011) AUTHORS Landweber,L.F. and Gilbert,W. TITLE Phylogenetic analysis of RNA editing: a primitive genetic phenomenon JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 918-921 (1994) STANDARD No information REFERENCE 2 (bases 1 to 1011) AUTHORS Landweber,L. TITLE Direct Submission JOURNAL Submitted (23-AUG-1993) Laura Landweber, Cellular and Developmental Biology, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U01012 BASE COUNT 438 a 73 c 101 g 396 t 9767 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ uguuguuuua uauuuaguuu aannnuuauu aaauuaggcc 181 aauuaauaau aauu------ ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -------uuu aa-aguuu-c u--ugAACUG UUA-UAU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuuuu) ---------- 2821 --AUUA-A-U AG-UUUAAU( GUUUAAA-U) AUUUaACUA- --AUGAUGAA AACAGUU-gu 2881 uc(u-auau) gua-ccaa-a g-aaauauag uaaaauaau- g--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------a 3721 uuuaauaaau aauuauu-ca a-auca-uaa aaugaauauu au>gaaaa-a uau(aaaaa- 3781 -u-u)-auau -guuu|u(aa ac)c|aauag u--auaaaua -aa--auaaa a--------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ----ua-u-- 5701 --uuuu---- aauugaauau uaaaaauaca aauuu---ua ---auu-ugu ac-u-uagua 5761 a-aaaaauaa uaaguuuggu aguaaaauaa aucaaaauaa ----auuauu uuaauauuua 5821 auauuuguua aauaaaaagu aac-uaaaua aau---uuau aagaauuauu auugcuaaua 5881 uauuuuuaaa aauauc---- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- -----aaaua -uguu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AAUUUUA|A AU---GCG-U UU(AUUAA)A UG-CGCU-CG 6841 UCUAAG|--- ---------- ---------- (-aauuuua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUG- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Aa- -aacaaacaa agua-au-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aua-a)aaau caA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuu--a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UU GUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauca uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(-aa- -aa)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UA|U|<---- ---------- ---------- ------auau auauuuaaa- 9301 >--------- ---------- -----uu-aa aca-(UAGU- AC(-GCA-)G GAUC-)auuu 9361 a--u~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.taren 10775 bp RNA RNA ~?~???? DEFINITION Kinetoplast Leishmania tarentolae.; 12S ribosomal RNA; 9S ribosomal RNA; ribosomal RNA. ACCESSION X02354 KEYWORDS 12S ribosomal RNA; 9S ribosomal RNA; ribosomal RNA. SOURCE Kinetoplast Leishmania tarentolae. ORGANISM Kinetoplast Leishmania tarentolae. REFERENCE 1 (bases 1 to 1665) AUTHORS de la Cruz,V.F., Simpson,A.M., Lake,J.A. and Simpson,L. TITLE kinetoplast (mitochondrial) ribosomal RNA from Leishmania tarentolae: conservation of peptidyl-transferase structural elements Primary sequence and partial secondary structure of the 12S JOURNAL Nucleic Acids Res. 13 (7), 2337-2356 (1985) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X02354 Phylo:Mitochondria,Kinetoplast,Leishmania BASE COUNT 491 a 71 c 105 g 506 t 9602 others ORIGIN 1 |~~~~~~~~~ uauuaaucaa auuuaauuaa uaaguaauau ugauuuuauu uaauuuuaag 61 uguuuaauua uauuuuugaa uuaaaauuuu auuauuuggu auuuaauauu uaaaaauauu 121 auauauuuua guuuuaaauu uguuguuuua uauuuaguuu aauauuuaua uauuaguaaa 181 uaauauagau uu-------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----aauuu aa-aauuu-u ua-ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaau) ---------- 2821 --AUUU-U-U AG-UUUAAU( GUUUAAA-U) AUUUaACUA- --AUGAAGG- CACAGUU-Gu 2881 uc(u-auau) gua-ccua-u a-aaaaauag uaaaauuauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaauaaau aauuauuaac u-uaacuuaa aauuaauauu au>ggaaa-a uuu(aaaaa- 3781 -u-u)-aaau -uauu|u(u- uc)-|uaaua c(--aauuca )ua|-uaa-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuuuuaaa aauauaaaaa -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AGUUUUA|A AA---GCG-U UU(AUUAA)A UG-CGUC-GG 6841 UCUAAG|--- ---------- ---------- (-auuuaua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- AG-UAGCAUA 7201 GUA-AU-U-U |AUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Au- -aacaaucua aaua-aa-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aaa-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuu--a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA GUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauca uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(-aau aaa)------ -------a|U UGAU(UGUUC )AUCAA-aaa 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UA|U|<---- ---------- ---------- ------auau auauuuaaaa 9301 >--------- ---------- ----AUU-AA UAu-(UAGU- AC(-GCAA)G GAUC-)UAUU 9361 A--UU-~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Lept.sp 10775 bp RNA RNA 11-JAN-191 DEFINITION Kinetoplast Leptomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Leptomonas sp. ORGANISM Kinetoplast Leptomonas sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: J03814 LOCUS TRLKPRGXY 2568 bp ds-DNA ORG 15-SEP-1990 DEFINITION Leptomonas sp. 9S and 12S ribosomal RNA genes. ACCESSION J03814 KEYWORDS 12S ribosomal RNA; 9S ribosomal RNA; ribosomal RNA gene. SOURCE Leptomonas sp. kinetoplast DNA. ORGANISM Kinetoplast Leptomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2568) AUTHORS Lake,J.A., de la Cruz,V.F., Ferreira,P.C., Morel,C. and Simpson,L. TITLE Evolution of parasitism: Kinetoplastid protozoan history reconstructed from mitochondrial rRNA gene sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 4779-4783 (1988) STANDARD simple staff_review COMMENT Draft entry and computer_readable sequence for [Proc. Natl. Acad. Sci. U.S.A. 85, 4779-4783 (1988)] kindly provided by L.Simpson, 06-MAY-1988. FEATURES Location/Qualifiers rRNA 351..1500 /note="12S rRNA (put.)" rRNA 1651..2250 /note="9S rRNA (put.)" BASE COUNT 968 a 207 c 322 g 1071 t ORIGIN BamHI site. BASE COUNT 465 a 75 c 117 g 505 t 9613 others ORIGIN 1 |~~~~~~~~a uuuuguuuuu auuuaucaau auaguuaaua aaauaaucua gaauuuuaug 61 uuaaauauau aauuauauuu uugauuauua uauuuuguua uuuuauuuaa guuaauuaaa 121 uuguauuaua uuuaauuuuu aaauuuguug uuuuauauuu aguuuuaugu uuauaauuua 181 augcaauacu gcaca----- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 ----uauuuu aa-aauuu-u aa-ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----ugauu) ---------- 2821 --AUUU-U-U AG-UUUAAU( GUUUAAA-U) AUUUaACUA- --AUGGAGG- CACAGUU-Gu 2881 uc(u-auau) gua-ccaa-u a-aaaaauag uaaaauuaau u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 uuuaauaaau aauuauuuga ucaaaauuag uacaaauauu au>guaaa-a uuu(aaaaa- 3781 -u-u)-aaau -auuu|u(a- uc)u|aauau u(--aacuua )ua|-uua-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 aauuuuuaaa auuauaauua -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AGUUUCA|A AA---GCG-U UU(AUUAA)A UG-CGUC-UG 6841 UCUAAG|--- ---------- ---------- (-auuuaua- ------)--- ---------- 6901 ---------- UUUAAGAGU- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUA)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAAU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Au- -aacaaucau cgua-ac-ua au--aaauua 7321 aa|a|uaaaa au-uu(u--a aaa-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uuaa u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -GUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UU GUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(auaa aaa)------ -------a|U UGAU(UGUUC )AUCAA-aaa 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-A UU|U|<---- ---------- ---------- ------uuau uauuuuaaaa 9301 >--------- ---------- ----AUU-AA UAU-(UAGU- AC(-GCAA)G GAUU-)CAUU 9361 ---AU-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.bruce 10775 bp RNA RNA ~?~???? DEFINITION Kinetoplast Trypanosoma brucei. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Trypanosoma brucei. ORGANISM Kinetoplast Trypanosoma brucei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X02547 Phylo:Mitochondria,Kinetoplast,Trypanosome BASE COUNT 464 a 66 c 129 g 493 t 9623 others ORIGIN 1 |~~~~~~~~~ auuuuaccaa uuaagaagaa uauuauaaua augggugucu uauauuuuaa 61 auaaauauuu aaauuccgug uaguaaauuu auuauuugua uuauuuauau aauaggugua 121 uuauauuuaa auuuuaaauu uguuguuuua uauuuagaua cauauuuaua gauuaauaua 181 uuuaaauaa- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----uauuu ua-aaauu-u au-ugAACUG UAA-UUA-UU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaau) ---------- 2821 --AUUU-U-U AG-UUUGAU( GUUGAAA-U) AUUUaAUUA- --AAGAUGU- UACAGUU-Gu 2881 uc(u-auau) gua-ccaa-a u-aaauauag uaagauuauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaauaaau aaauauuuau u-uuucu--u uguaaauauu au>gaaca-a uuu(aaaaa- 3781 -u-u)-aauc -uguu|u(a- ac)-|uaaaa u(--guuaua )ua|-uaa-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuuuuaaa aauauaaaaa -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua ucg>------ ---------- 6781 ------(--- )--------- -UAUUUUA|A GU---GCG-U UU(AUUAA)A UG-CGUU-UG 6841 UCUAAG|--- ---------- ---------- (-auaauua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(UAU)- UG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAAU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUUAAA 7261 UU-------- ---------- -------Ac- -aacaaauaa aaua-aa-gu au--gaauua 7321 au|a|ucaaa au-uu(u--a aua-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uau-ga u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUU(- --------UA UUUAUAUAG- )CAUA-AG|a |-|-----|< 8221 acuauauucu uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uUAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAA- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUAC| 9121 c--------- -----(--a- -ug)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 a---GUAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UU|U|<---- ---------- ---------- ------aua- auuaauaaua 9301 >--------- ---------- ----AUU-AA UAu-(AAGU- AC(-GCAA)G GAUU-)GAUU 9361 A--UU-~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (2)-MYXOMY 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.polyc 10775 bp RNA RNA 18-AUG-1998 DEFINITION Mitochondrion Physarum polycephalum. subsp. RNA-Edited sequence; . ACCESSION AF080601 KEYWORDS . SOURCE Mitochondrion Physarum polycephalum. subsp. RNA-Edited sequence. ORGANISM Mitochondrion Physarum polycephalum. REFERENCE 1 (bases 1 to 2779) AUTHORS Yang,N., Costandy,H., Spottswood,M.R. and Miller,D.L. TITLE of Physarum polycephalum RNA editing of the mitochondrial large subunit ribosomal RNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2779) AUTHORS Yang,N., Costandy,H., Spottswood,M.R. and Miller,D.L. TITLE Direct Submission JOURNAL Submitted (27-JUL-1998) Cell and Molecular Biology, University of Texas at Dallas, 2601 North Floyd Road, Richardson, TX 75080, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF080601 BASE COUNT 941 a 420 c 515 g 903 t 7996 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~uacu-u uuaagaaucu aua------- ---------- ---------- 241 ---------- ---------- ---------- -----auaaA AAUUCUUGA- ----CGGAUA 301 |UAU--AGA| UUU-UUUA-U G|uaggcu-- ---------a uucaauaca| -aucu(-uau 361 agg------) a|gauauua- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- -----aUAAC |AUAAUGAAU 841 UGA(AACA)U CUCAGUA--- -AUUAU---- ---------- ---------- ----GGAUUA 901 UAAACA(-AA CC)UG-A-AU |UUU-AUUA- -GUAG-U(-G GUGA)GCGAA -CAUAAAAU- 961 -auuuua------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- GUg|U(GUC) 1321 A--GAAG(UU AAAAC)CUUg ua-------- ---------- ---------- ----------- ------(--- ---------- 1561 -------)-- ---------- ------ugga g(uacca-c) -cuuca---a uauua-aaca 1621 ---CA-UAAA A-AAAUCGAU AGCG-AA--- -AAAGUACC( -GUGA-)GGG ---AAC-UA- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 aaaagcacuc g(aucua-a) agag------ ---------- ------guUG AA--AUAGA- 1801 UCUUG-AAAU CAAG-AAU-U U-<------- ---------- ---------- ---------- 1861 ----->AAAA GCAuuugaug uuuuu---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----caagg 2041 --)---aaaa auaccaaa-G UACCUU(UU- GUAUC)AUGG |AUC-AACGA GA-----UA- 2101 AAUGAAAAAG CAA--gcuua u-au---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------auua u)-----aua gcauag-cga 2521 aag-(-caaa )--uuu---- --(------) ---------- -----UUGAG UUUUU-UCAU 2701 UUA-AACCCG AA-ACCUA-G UG-AUCUAAU CAU-GAG-CA GAUUGAA--- A-UG--AG-U 2761 -(-------- ---------- ---------- ---------- -----uaac) AACUUUUGGA 2821 GGAUCGAA-C CCUU-UUCU( GUUGCAU-C) AGAA-UGGGA --UGACUUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUAGGAG AUAGCU-GGU UUUCU--GCG AA-AUG-UAU 2941 (-UUAG)GUA CC-GU-GAUA GUUU-u uuc|-cuggu 3061 c|guaaag|c aagaagc-gg ga-uau--aa aagcuu--(u uaauc---)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--aag cua-cu---c 3301 auu--c---- aaacu-c--- uaaa|-gaca -g-g---gaa a--------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uuu--AU-C -UAUU-AUAC AGACU--UU- GG-GU(-GCU 3481 AAG)GUCCUU GG-UC----U AAAGGA(GAA -GAG)UCC-U CACAC-U-CA -GC-UAA--- 3541 --GGA-CCGC -AAU-AA-A- ACUUAAGUC- ---------- ---aaagau- aucuuauuac 3601 -aa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGACA-AAAC G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-A GGC(UUUCAA 3781 GC-A)-GCCA -UCUU|U(U- AA)A|GAAAG C(--GUUACA )GC|-UCAC- GUUUCA<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 --agu-a--c -aa-gau|au uaca------ ---------- ---------- ----aauaaa 3961 ggauu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uuucguu uua------- ---------- ---------- ---------- 4081 -------|UC CAAA--GCU| A--G-UG|aa ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 uuuauu)--- ---------u -u-----GAU AGCAG-AA|- UC-CUUAGUU U---UUAAUG 4501 G--------- -AUAA-UUUA (GUAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->UA UUU--UAU-U U|-UAA---| AUCUAAGUGA AAAAUGU-UG 4681 AU|AUCAGUA -GUUU-UUA- uaa-cg---- (auua----- ---------- ---------- 4741 ---------- -----)---- uguuau|cgc c-aaag-uuu aaa--GGUUU -|----CCUU 4801 AUCCA---UU ---------- ----(--CUU UA)A-A|-GA UAAGGG---- ---------- 4861 ---UUAUA-- -CGUCCUCUC A-U-G-U--- UUUAGC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--gca---a ca---a-caa ag-gaguuu- gaug(----- ---------- ---------- 5041 ---------- -auuaaaaau ----)cauuu |---gu|uuu a--auauugu -ga------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ------ ---------- guuaaa-aua aaacgua|cu 6481 ---aAAACC- -(GACACU)G G|uaaac-ua gua-(-aa-u ------)-ua cugcggcg-| 6541 |--AUGGA-U U--AACUAUA -CUAA-AGGA ACUCGGCAAA UUCAAU-CUG UAAC(UUUU- 6601 )GGAGAA-AG AUU|aucaua auuuucc--- ---------- ---------- -------UGU 6781 -GAU|G(GCA )C--AGAAUA GAGGGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGUA---- ---------- (--UAAA--- ------)--- ---------- 6901 UAUGAUGUA- UAG--GUCUG AGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UCAGUA-ggu aaacga-ga- 7021 --cugauu-a u-(------- ---------- ---------- ---------- ---------- 7081 --------cu uuaagucucu uucagauaau uua)auu-ug uuag--ucuc u-uaaauca| 7141 CU-GGUA-AA C-|GG-C|-G -GCUGU-(AA CUAUG)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGGG(-U AAGU-)UCCG AC|GU-GCAC GAAUGGUGUA A-CGACUUCC 7261 CU-------- ---------- -------ACU GUCUCUAGUG UAGA-UC-CA ----AUGAAA 7321 UU|G|GAAUU AU-UG(U-GA AGAUA)CGAU AUA----GAA AUAGCCAGAC GGAAAG-ACC 7381 CUGUGA-|-A CCUUU--ACU AU|--a-ugc uuu--uauu| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- ---------uuu aauga-a-ag -ugg--U-UA GUUUGACUG( 8161 GGG)CG-GU- A|GCCUCC(- --------CA AAUCGUAAC- )GGA----|G |U|GCG--|< 8221 uacaaaagau uuguuacguu uagauuuauc uacac----- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ---gaua|GC (G|CAAGG)G Cua-aua-cu 8761 u-gu-CUGAC UGUUU-GAA( -ugacaa--- )UUCAU-UCA G--------- ---------- 8821 ---------- ---ggauuUA UU-------- ---(UUUA-- -)-------- ----AAUCGG 8881 U|---CCUAG UAAUC-CAAU CU-U------ ---------- AAC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----CUGUGG GC)GU|AGGA 9001 UUGC-CAAC- |GAAUAAAAG GUACUC|CGG G|GAUAACAG |G-CUG-A-U AAUUCCUUAG 9061 AG(U--ACCU )AUCGACGGA --AUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGAG AC-UG(--AA -AA)GGGCCU CAAG-GGU|U CGGU(UGUUC )ACCGA-UUA 9181 AU-AGUGGU- --ACGUGAGC UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUCCCUAU 9241 CU|acuau-u uc|a|<---- ---------- ---------- ---------- ---------- 9301 >----u-aag acguaa-aag uug-UUC-UG UC--(UAGU- AC(-GAAA)G GACU-)GGUG 9361 G--AA-<--- ---------- ---------- -------->C GAUUCCU-CU GGUUUUUGAG 9421 C|-ugu---- (uugc-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ----GCAC-G CUCA--UUCG CUAC-GAAUC UU-------- ---------- -------UUA 9601 ---------- -UUAAUCGCU (GAAAGC--A U-CUA)A-GC -GA-GAAAUA Au-acuu--- 9661 -uaag--u-- -cuuuu-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- ---uaac|CG 9961 UUG(UAGACU A--)UAACGU C--------- ---------- ---------- ------aaua 10021 g|gcucauga ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---aaugcau guc------- ---------- --------(- ---------- 10141 guaagauuug auuauagagu a)gaugcuug caaaagcuuu ---------- ---------- 10201 ---acucacc a|a|ucauca cuaac----- ---------- ---------- ---------- 10261 ---------- ---cauua-- ---------- ---------- ---caa---- ---auuuuac 10321 cuu-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (2)-CROWN 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (3)-ACANTH 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.caste 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Acanthamoeba castellanii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Acanthamoeba castellanii. ORGANISM Mitochondria Acanthamoeba castellanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U03732 LOCUS ACU03732 7778 bp DNA INV 01-JUN-1994 DEFINITION Acanthamoeba castellanii Neff mitochondrion rRNA large subunit gene. ACCESSION U03732 KEYWORDS . SOURCE amoeba ORGANISM Mitochondrion Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 7778) AUTHORS Lonergan,K.M. and Gray,M.W. TITLE The ribosomal RNA gene region in Acanthamoeba castellanii mitochondrial DNA JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 44 to 462) AUTHORS Lonergan,K.M. and Gray,M.W. TITLE Predicted editing of additional transfer RNAs in Acanthamoeba castellanii mitochondria JOURNAL Nucleic Acids Res. 21, 4402-4402 (1993) STANDARD full automatic REFERENCE 3 (bases 5550 to 6183) AUTHORS Lonergan,K.M. and Gray,M.W. TITLE Editing of transfer RNAs in Acanthamoeba castellanii mitochondria JOURNAL Science 259, 812-816 (1993) STANDARD full automatic REFERENCE 4 (bases 1 to 7778) AUTHORS Lonergan,K.M. TITLE Direct Submission JOURNAL Submitted (24-NOV-1993) Kim M Lonergan, Biochemistry, Dalhousie University, Sir Charles Tupper Medical Building, Halifax, Nova Scotia, B3H 4H7, Canada STANDARD full automatic COMMENT NCBI gi: 495327 FEATURES Location/Qualifiers tRNA 44..462 /citation=[2] /note="tRNA gene cluster 1; GenBank Accession Number L20506" rRNA join(463..2232,2988..3007,3868..4500,5254..5549) /product="ribosomal RNA large subunit" /citation=[1] exon 463..2232 /number=1 intron 2233..2987 /number=1 exon 2988..3007 /number=2 intron 3008..3867 /number=2 exon 3868..4500 /number=3 intron 4501..5253 /number=3 exon 5254..5549 /number=4 tRNA 5583..6118 /citation=[3] /note="tRNA gene cluster 2" misc_feature 5550..6183 /note="GenBank Accession Number M97651" rRNA 6184..7724 /product="ribosomal RNA small subunit" /citation=[1] source 1..7778 /clone_lib="ATCC 30010" /strain="Neff" /organism="Acanthamoeba castellanii" /mitochondrion CDS 2438..2866 /note="rRNA large subunit intron 1 orf; NCBI gi: 495328." /codon_start=1 /translation="MKIDKNWIVGFVDGEGCFYIGINKSVDSKLGYQVLPEFRVVQHK RDIKVLYAIKDFFGHGSVVCNKSNGSEIYEYRVRKFETLHDVILPFFESNGLLTSKKF NFLAFRDVILIMKRREHLTESGLSKIIDIKSRMNRSSIHY" CDS 3275..3781 /note="rRNA large subunit intron 2 orf; NCBI gi: 495329." /codon_start=1 /translation="MKNLDLKQEKALIDPFWISGFVDGEGCFCISFNLKERLTLGIEV RPSFSISQTRDKEGLNLRCLQDFLNFFDCGFIRFSKRDNTWKYECRDLSDIRSKVLPH FEKFTLRTKKLRDFELFKDVVNSVASKQHLNEVGLKRIIDISYQINMGKRKLTKDELL SKINLKNL" CDS 4633..5127 /note="rRNA large subunit intron 3 orf; NCBI gi: 495330." /codon_start=1 /translation="MQKNQFKKLNNEQLAYLAGFVEADGCFLVQIIPGLQYRYKHTIR ISIVFYQKKDKHWYFLQLKNLIGLGSIRFRNDGMLEYSITGLSLVNKFLEMLFPYLIL KKNLAVLIFRIIKGLNDVKNEAGFLEVCKLVDEVADHTYSKKRKNTSLTVKNSLLLPV ETEE" BASE COUNT 2621 a 1062 c 1582 g 2513 t ORIGIN BASE COUNT 948 a 355 c 566 g 850 t 8056 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~uu 181 gauuauaaau acaaauaa-g uaauuauaua aaaau----- ---------- ---------- 241 ---------- ---------- ---------- -----UAAAG GGUAAAUAA- ----CGAAUA 301 |UCUuaUAG| CAU-AAAA-G U|uu------ ---------- -----cugg| -cgcc(-uaa 361 ucg------) a|gcg-aaa- uauacaa|ug --agu--(-- ---------- --------cg 421 aaaaauu)-- acuuaga--a uuguaaa-uu ccag--c-AG A--------- -----(GAAA 481 )UCU|----- ---------- ---------- -aaca----- ---------u uuaaau-au- 541 ---------- -----uguu- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----cUUAC |CUAAUUAAG 841 UGA(AACA)U CUCAAUA--- -GUUAG---- ---------- ---------- ---AGGAAAG 901 GAAAAU(-AA UU)AAAG-AU |UUU-GUUA- -GUAA-U(-G GUGA)GUGAA -AACAAAAU- 961 -AGCCAA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------a auuugaauuu aaggaaauag aagucuuau< ---------- ---------- 1261 ---------- ---------- ---------> (augau-)uu aagc------ GC-|C(AUA) 1321 G--AAGG(UG AAAGC)CCUu ua--uaauuu cuuauuuuua auauauauaa u-auGAGUAAA AUAAAA(--- --------uc 1561 ugugaaa)UU UUAUUGGAAA ----aaGGCA A(ACCCA-U) -UUGCUA--A GGCUaaauac 1621 ---AC-UUUU A-UGACUAAU AGUG-AA--- -CAAGUACU( -GUGA-)AGG ---AAA-GA- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAG--ac- -(--aaa--) --gu------ ---------- ---------- --uaAAAGA- 1801 UCUUG-AAAU UGUU-UAC-C U-<------- ---------- ---------- ---------- 1861 ----->-uaa ggaucuagag cgca----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----gcgaa 2041 --)----ugu guuauagg-G UGCCUU(UU- GCAUA)AUGA |GCG-GGCGA UU-----UCU 2101 AAGGAACUAG CAA--acuau g-guc--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------guu a)----gaug --aagg-uGA 2521 AGU-(-GAAA )--GCG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->-agc uu(uaauu-) aa-gcg---- -----uuAAG UUAGU-UUUU 2701 UGA-GACUCG AU-ACUAA-G CG-AUCUAUU UAC-UGC-CA GAUUGAA--- A-GU--AC-U 2761 U(-------- ---------- ---------- ---------- -----uaac) ACGUACUGAA 2821 GGAUCGAA-C CC-AUGUAU( GUUGCAU-A) AUAC-CGGGA --UGAGUGG- UAGCUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-GCUUAGUG UUAGCU-AGU ACUCU--ACG AA-AUC-UAU 2941 (-UUAG)GUA GA-GC-GUUC UGUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------ca cau|-UAUUG 3061 U|UGGUAG|A GCUCUAG-gu aa-gca--au gggaa---(u uaauac--)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uu cua-cu-gag 3301 uuu--ac-UU AAACUGCG-- AAUA|-GCAA -U-A--aauu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uuuuuAC-A -GAGC-AGGC AGAUU--GC- GG-GC(-GCG 3481 AAG)GUUCGU AA-UC----G AAAGGG(AAA -CAG)CCC-A GAAUA-U-CA -GC-UAA--- 3541 --AGU-CCAU -AAA-AA-U- AAUUAAGUG- ---------- uaugaAAUA- AUCUAAAGUG 3601 uua------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- uaaca-AUUA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-U GGC(UUAGAA 3781 GC-A)-GCCA -UCCU|U(U- AA)A|GAAAG C(--GUAACA )GC|-UCAC- UAAUuuGCA-UU-A -UA-GGG|-U UUuaugau-- ---------- ---------- -----auaac 3961 ggacu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---aaAAUUA UUU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCU| A--U-AU|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)--- ---------- -C-----GGU AGUAG-AG|- UA-UCUUAUA U---uuuau- 4501 ---------A GAUAA-AUUU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GA AUU--UAU-U A|-auau--| AUUAAGAGAA AGUAUGC-CU 4681 GU|AUGAGUA -GCA---AA- GAA-UA-GU- (gagaa---- ---------- ---------- 4741 ---------- -----)-A-C UAUUC-|CAC C-GUAU-AUA UAA--GGUUU -|----CCUA 4801 UUuaua--AA ---------- ----(--UUU AU)U-U|-UA AUAGGG---- ---------- 4861 ---UUAAU-- -CGGCCCCUA A-G-U-Uu-- uauAAU-(-G ACA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--auu---a ua---G-GCG AU-GGGUUU- UGGG(----- ---------- ---------- 5041 ---------- --uuaaaauu ----)CUCAA |---AU|uuu u--caguaag |ug<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-a caaaggg-gg cagguuauuu aau------u 5461 uuaau(aaaa uua---)auu aag|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- --uaaucagg 5581 a-<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->cc uuuccggaaa ----aa-gcu uug<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ------aaaa uaaaaa---- -ACCGUA|CU 6481 ---UAAAUC- -(GGCUCC)G A|UAUUU-UG AUA-(GAG-U A-----)-UA UUAAGGUG-| 6541 |--AUAGG-A U--AAUAAUA -UUGA-AGGA ACUCGGCAAA AUAGCU-CCG UAAC(UUCG- 6601 )GGAGAA-GG AGU|accuuu uguaa----- -----(gcaa ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- -uuacuuaua 6781 -ggu|G(UAA )C--AGAAUA GAGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CACA-GG 6841 ACUCCG|CU- -AAGUU---- ---------- (--GUAA--- ------)--- ---------- 6901 AACGAUGUA- UAG-GGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGAAA-GAU aaaaag-gau 7021 --UGGUA--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g gaa)-----U GCCA-ugaau a-UAAAUC-| 7141 UC-AGUA-AA C-|GG-C|-G -GCUGU-(AA CCAUA)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGGG(-U GAGU-)UCCG AC|CU-GCAU GAAUGGUGUA A-CGACUUCC 7261 CU-------- ---------- -------ACU GUCUCCAGUA UUAA-CC-UA ----GUGAAA 7321 UU|A|AACUU GC-UG(U-GA AGAUG)CAGU AUA----UAA AUGAUUGGAC GGAAAG-ACC 7381 CUGUAC-|-A CCUUU--ACU AU|--A-AUC AUA--GAUU| <--------- ---------- 7441 ---------- ---------- --->GUUUU- UA-----AAA -uauugaaua UGU---AGGA 7501 UAAACAGcaa -GCUu---au u-auacuuua au<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gcu a)guuaau-u guu--uaGGC 7681 AAUAGUGAAA UACUGUU|-- -----uuuu- uaa-U-UUUU AAAA-Cuaa- -cuaa----- 7741 -----(---a uu--)----- ---------- ---------- ---------- ----uuag<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAU AGUUU-A-UG -ACU-GG-UA GUUUGACUG( 8161 GGG)UG-GU- C|GCCUUC(- --------UA AAUAGUAAC- )GAAG-GC|G |U|GCAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->augg-uaa 8401 -ua|--au-- aauuaa<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uuaaaaa-- )----uuaau uu-------- ---------- 8701 ---------- ---------- ---------- ---gaaa|AU (U|UAAUG)G Uaa-aag-au 8761 u-gc-UUGAC UGAGUAGAu( -cgacag--- )aUCGAGUCA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CAAU AG-U------ ---------- GCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GAAUGG AA)GG|GCUA 9001 UUGCUUAAC- |GGAUAAAAG GUACGU|CAG G|GAUAACAG |G-CUA-A-U GGGCCCUAAG 9061 AG(U--CCUU )AUCGACGGG --CUUGUUUG GU-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGA GC-UG(--CA -GG)CGGUUC CAAG-GGU|U AGGC(UGUUC )GCCUA-UUA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU+C(GU GA)GACAGUU CGGUUCCUAU 9241 CU|GUCAU-U UU|G|<---- ---------- ---------- ---------- ---------- 9301 >--uaa-aaa c--uaa-AAA AAU-GUU-UC UU--(UUGU- AC(-GAGA)G GAUU-)GAGA 9361 A--AU-<--- ---------- ---------- -------->G UAUACCA-CU GGUAAAUCGA 9421 U|-UGU-ACU (guca-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 aag-gcaUUG UCGA--GUAG CUAC-GUAUA Aau------- ---------- -------uuu 9601 ---------- -AUAAUUGCU (GAUAGC--G U-AUA)A-GC -AA-GAAAAU GAuuuuu--- 9661 ---au--g-- -uuuuu-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -uuaaac|GG 9961 UUG(UAGAUA A--)UAACUU U--------- ---------- ---------- -----uUAUA 10021 G|GCGCGAAA ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uua-aAU UUG------- ---------- --------(- ---------- 10141 ---------- -------GUA A)CGAAU--- ---------- ---------- ---------- 10201 ------ggUU U|A|CGCGUA CUAau----- ---------- ---------- -----uauua 10261 a--------- ---------- ---------- ------auuu uuuauauaug auuu|uuuug 10321 caauuu--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (3)-ALVEOL 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.aurel 10775 bp RNA RNA 25-JUL-1994 DEFINITION Mitochondria Paramecium aurelia.; 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. ACCESSION X15917 KEYWORDS 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. SOURCE Mitochondria Paramecium aurelia. ORGANISM Mitochondria Paramecium aurelia. REFERENCE 1 (bases 1 to 40469) AUTHORS Pritchard,A. TITLE Direct Submission JOURNAL Submitted (21-JUL-1989) to the EMBL/GenBank/DDBJ databases. Pritchard A., University of Colorado Health Science Centre, Department of Microbiology, Denver CO 80262, U S A STANDARD No information REFERENCE 2 (bases 1 to 40469) AUTHORS Pritchard,A.E., Seilhamer,J.J., Mahalingam,R., Sable,C.L., Venuti,S.E. and Cummings,D.J. TITLE Nucleotide sequence of the mitochondrial genome of Paramecium JOURNAL Nucleic Acids Res. 18 (1), 173-180 (1990) STANDARD No information REFERENCE 3 (bases 1 to 40469) AUTHORS Valverde,J.R., Marco,R. and Garesse,R. TITLE A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (12), 5368-5371 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X15917 For overlapping sequences see accession numbers <K00904>, <M15275>, <M15220>, <K01751>, <K01749>, <X04157> and <M26930>. NCBI gi: 13256 BASE COUNT 870 a 395 c 563 g 830 t 8117 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~----- -----uuugc agucu----- ---------- ---------- 241 ---------- ---------- ---------- -----aacaA AGCACUAGA- ----CGGAUG 301 |CCU--AAA| AAUCUUGG-U U|gagggcgu aa-------- -----aucu| -aaau(--ac 361 gau------) a|uuuguau- gUAAGC-|UU --ucuuu(-- ---------- ---------- 421 ugauau-)au agaa-----U UGCUUA---- ggaugua-ca agggc----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ccuugaAAAU |UUUAUGAAG 841 CGA(AACA)U CGUAGUA--- -AUAAA---- ---------- -----uc--- ---uaaaaca 901 uAAUUC(-AA CU)GA-G-AU |GUU-AA-A- -GUAA-C(-G GUGA)GUGAA --acaaagu- 961 -AGCUCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- -aaaauuaga aaagagggcu gaauuacuu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)aa guaa------ GC-|U(ACA) 1321 G--UGGG(UG AUAGC)CCCg ua--agcuuu u--GAGUAUA UAUUAU(--- ---------- 1561 uaacaaa)AU AAUAUAGAAA ------uguu u(-uuca-a) -aaaaaa--A AGCUA--AUA 1621 ---AAACCAA A-UU-UUGAU AGAA-AA--- -UAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAAAUU U(-gua---) GAAU------ ---------- ---------g uuuaAAAGA- 1801 UUCUG-AAAU CUAG-UGC-A G-<------- ---------- ---------- ---------- 1861 ----->UGAA ACAGUUAAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----guguu 2041 --)------- GUUUUAAC-G UACCUU(UU- GUAUA)AUGG |GCC-AACUA GU-----UU- 2101 AUAAAAUUAG CGA--gc--- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -uuaucaaau c)-------- -----g-cGU 2521 AAU-(-GAAA )--AU----- --(------) ---------- ---------G UUAAU-UUUA 2701 UAA-GACCCG AA-GUCAA-G UG-AUCUAAU CAU-GGC-UA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----agaag) ---------- 2821 --AUCGAA-C CC-AUAAAU( GUUGCAA-A) AUUU-CGGGA --GAAGCUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUUGACG AUAGCU-GGU UUUUC--GCG AA-AUC-UAU 2941 (-CUAC)GUA GA-GU-AUUU uuuU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------uc UUU|-UGUGC 3061 G|GGGUAG|U GUAAUCU--u uu-cuu--aa gaaga---(u cuga----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uc uu--uu-uuc 3301 gug--a--AG AAUCUUCC-- AAUA|-CGCA -U-U---AAA ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -au---aa-u -AAAUAAAAC GGACU--GA- GA-GU(-GCA 3481 AAG)AUUCUU GG-UC----G AGAGGG(AAA -CAG)CCC-A GACCG-U-AC -GA-UAA--- 3541 --AGU-GCAU -AAA-CA-A- UGCGAAGUA- ---------- -----aaag- aauuguuuuu 3601 aaa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- aaaau-AUCG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-A GGC(UUAGAA 3781 UC-A)-GCCA -GCCU|U(U- AA)A|GAAAG C(--GUAACA )GC|-UCAC- CAAUAGuaa-aa-a -ua-auu|-u uuaa------ ---------- ---------- ----auuaaa 3961 GCGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAGCAU UGU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCG| G--C-GG|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aacu--)--- ---------- -C-----GGU AGCGA-AA|- CG-UUUUGUA G---GUUGUU 4501 G--------A AGGUU-UAUU (GAGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UAG--GCU-G G|AGAU---| AUCAAAAUUG AUAAUGU-UG 4681 GC|AUGAGUA -AUA--GAC- AAA-AU-GU- (ucaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUUU-|UGU U-UGAU-AAG UUA--GGGUU -|----GCUU 4801 UGUUUu--GA ---------- ----(--UCA UC)U-U|-AC AAAGUG---- ---------- 4861 ---UGAUC-- -CGGUCUCUA A-U-U-U--- uuuAAAU(-a gau------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-AAG AU-GAGCU-- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CU 6481 ---AACACU- -(AACGCA)A G|UACUU-UA GUC-(GAG-C A-----)-GA UGACGACAA| 6541 |--AAGAG-C U--AAUGAUA -UUGA-AGGA ACUCGGCAAA AUUACU-UUG UAAC(UUCG- 6601 )GGAUAA-AA AGU|gc---- ---------- -----(guca ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 --gc|a(aac )aaaaaaaug GGGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CAUA-AG 6841 AUUUUG|CA- -AAAUU---- ---------- (--uaau--- ------)--- ---------- 6901 UAUGAUGUA- UAA-AAUCUG ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UUGUCA-UGC AAAGUU-UU- 7021 --AACGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u agc)----gC UGUU--GAUA A-CAAGCA-| 7141 GC-AAUA-AA C-|GG-C|-G -GCCAU-(AA CUCUG)AUGG UC|C(UAA)- GG-UAGCAAA 7201 AUC-CC-U-U |GACGGG(-U AAGU-)UCCG UC|CU-GCAC GAAUGGAGUA A-CGACUGCC 7261 CU-------- ---------- -------ACU GUCUCCAAUA UCAG-CU-CU ----AUGAAA 7321 UU|G|AAUUU GC-UG(U-GA AGAUG)CAGC UU-----UUU ACAACUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GA|--U-GCU AGG--AACU| <--------- ---------- 7441 ---------- ---------- --->AAAGG- GA-----UAU -Acuggaga- ua----aauU 7501 AAGGUAGGA- -gu------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uaa a)-------- --------uc 7681 gcAAUUGAAA AACUACU|u- ----cucuu- u-U-A-CGUC UCUU-Cau-- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------uuua cuUUU-C-UG -GCU-GU-UA GUUUAACUG( 8161 GGG)CG-GU- U|GCCUCC(- --------UA AAAAGUAAC- )GGAG-GU|G |A|GCAU-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AAgUUA 8401 -CG|--CU-- uuguga (auuuu---- )ucuuugcaa aa-------- ---------- 8701 ---------- ---------- ---------- ---ugAG|uu (-|-AAUA)a aac-uGC-GU 8761 A-AU-UUGAU UAAAU-UAC( -aaacua--- )GUAAU-UUA G--------- ---------- 8821 ---------- --------GG GC-------- ---(uaauu- -)-------- ----GCC-UG 8881 C|---UAUAA UGAUC-CGGU GU-U------ ---------- UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUUUGA AU)AA|GACA 9001 UCGCUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U AAAUUCUGAG 9061 AG(U--UCCU )AUUAAAGAA --UUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CU-UGGU GG-UG(--CA -GA)AUCUGC CAAG-GGU|U UGGC(UGUUC )GCCAA-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-U(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A GA|A|<---- ---------- ---------- ---------- ---------- 9301 >UUAAG-AAA CG-AGG-CUG AGA-UCG-AC GC--(CAGU- AC(-GAGA)G GACC-)GACU 9361 A--GA-<--- ---------- ---------- -------->A CUAGCCU-CU GGUUCGGGAU 9421 C|-UAC-UUU (aaaua)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AAG-GUAUAG AUGC--UAUG CUAA-GCUGG Aua------- ---------- -------agc 9601 uaauuuuuua auuaaaauuu (uuuagc--u -uaaa)g-aa -uu-agaagc uuuUUAG--c 9661 aacUC--G-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaguau|UU 9961 UAG(AAGACU A--)CUAAGU U--------- ---------- ---------- ------aauu 10021 u|gaagguag ---------- ---------- ---------- ---------- ---------- 10081 ---------- ----cuguua uag------- ---------- --------(- ---------- 10141 --------gg cccuuaacgg g)c-gua--- ---------- ---------- ---------- 10201 ----ccagcu c|c|cc-uua aaaaa----- ---------- ---------- -----auacu 10261 a--------- ---------- ---------- -agacucuua uuauuauuau au-------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.prima 10775 bp RNA RNA ~?~???? DEFINITION mitochondria,Paramecium primaurelia 7S+20S. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Paramecium primaurelia 7S+20S. ORGANISM mitochondria,Paramecium primaurelia 7S+20S. REFERENCE 1 (bases 1 to 40469) AUTHORS No information JOURNAL 5173-5181 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: K00634 Phylo:Mitochondria,Protozoan,Paramecium Updated sequence from M. Schnare's comments BASE COUNT 860 a 374 c 542 g 794 t 8205 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~----- -----uuuga agucu----- ---------- ---------- 241 ---------- ---------- ---------- -----aaccA AGCACUAGA- ----CGGAUG 301 |CCU--AAA| AAUCUUGG-U U|gagggcgu aa-------- -----auau| -aaau(--ac 361 gag------) a|uuuguau- gUAAGC-|UU --uuuuu(-- ---------- ---------- 421 ugauau-)au aaaa-----A UGCUUU---- ggaugug-ca acaac----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ccuuaaAAAU |UUUAUGAAG 841 CGA(AACA)U CGUAGUA--- -AUAAA---- ---------- -----uc--- ---uaaaaca 901 uAAAUC(-AA CU)GA-G-AU |GUU-AA-A- -GUAA-C(-G GUGA)GUGAA --acaaagu- 961 -AGCUCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- -aaaauuaaa agaaggggcu gaacuacuu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)aa guag------ GC-|U(ACA) 1321 G--AGGG(UG AUAGC)CCCg ua--agcuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---GAGUAUA UAUUAU(--- ---------- 1561 uaacaaa)AU AAUAUGGAAA ------uguu u(-uuca-a) -aaaaaa--A AGCUA--AUA 1621 ---AAACCAA A-UU-UUGAU AGAA-AA--- -UAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAAAUU U(-gua---) GAAU------ ---------- ---------g cuuaAAAGA- 1801 UUCUG-AAAU CUAG-UGC-A G-<------- ---------- ---------- ---------- 1861 ----->UGAA ACAGUUAAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----guguu 2041 --)------- GUUUUAAC-G UACCUU(UU- GUAUA)AUGG |GCC-AACUA GU-----UU- 2101 AUAAAAUUAG CGA--gc--- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- uuuaucaaau c)-------- -----g-cGU 2521 AAU-(-GAAA )--AU----- --(------) ---------- ---------G UUAAU-UUUA 2701 UAA-GACCCG AA-GUCAA-G UG-AUCUAAU CAU-GGC-UA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----agaag) ---------- 2821 --AUCGAA-C CC-AUAAAU( GUUGCAA-A) AUUU-CGGGA --GAAGCUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUUGACG AUAGCU-GGU UUUUC--GCG AA-AUC-UAU 2941 (-CUAC)GUA GA-GU-AUUU uuuU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------uc UUU|-UGUGC 3061 G|GGGUAG|U GUAAUCU--u uu-cuu--aa gaaga---(u cuga----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uc uu--uu-uuc 3301 gug--a--AG AAUCUUCC-- AAUA|-CGCA -U-U---AAA ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -au---aa-u -AAAUAAAAC GGACU--GA- GA-GU(-GCA 3481 AAG)AUUCUU GG-UC----G AGAGGG(AAA -CAG)CCC-A GACCG-A-AC -GA-UAA--- 3541 --AGU-GCAU -AAA-CA-A- UGCGAAGUA- ---------- -----aaag- aauuuuuuuu 3601 aaa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- aaaau-AUUG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-A GGC(UUAGAA 3781 UC-A)-GCCA -GCCU|U(U- AA)A|GAAAG C(--GAAACA )GC|-UCAC- CAAUAGuaa-aa-a -ca-auu|-u uuaa------ ---------- ---------- ----auuaua 3961 GCGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAGCAU UGU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCG| G--C-GG|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aacu--)--- ---------- -C-----GGU AGCGA-AA|- CG-UUUUGUA G---GUCGUU 4501 G--------A AGGUU-UAUU (GAAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UAG--GCU-G G|AGAU---| AUCAAAAUUG AUAAUGU-UG 4681 GC|AUGAGUA -AUG--GAC- AAA-AU-GU- (ucaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUUU-|UGU U-UGAU-AAG UUA--GGGUU -|----GCUU 4801 UGUUUu--GA ---------- ----(--UCA UC)U-U|-AC AAAGUG---- ---------- 4861 ---UGAUU-- -CGGCCUCUA A-U-U-U--- uuuAAAU(-a uaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-AAG AU-GAGGU-- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CU 6481 ---AACACU- -(AACACA)A G|UACUU-UA GUC-(GAG-C A-----)-GA UGACGACAG| 6541 |--AAGAG-C U--AAUGAUA -UUGA-AGGA ACUCGGCAAA AUUACU-UUG UAAC(UUCG- 6601 )GGAUAA-AA AGU|gc---- ---------- -----(guca ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 --gc|a(aac )aaaaaaaug GGGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CAUA-AG 6841 AUUUUG|CA- -AAAUU---- ---------- (--uaau--- ------)--- ---------- 6901 UAUGAUGUA- UAA-AAUCUG ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UUGUCA-UGC AAAGUU-UU- 7021 --AACGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u agc)----gC UGUU--GAUA A-CAAGCA-| 7141 GC-AAUA-AA C-|GG-C|-G -GCCAU-(AA CUCUG)AUGG UC|C(UAA)- GG-UAGCAAA 7201 AUC-CC-U-U |GACGGG(-U AAGU-)UCCG UC|CU-GCAC GAAUGGAGUA A-CGACUGCC 7261 CU-------- ---------- -------ACU GUCUCCAAUA UCAG-CU-CU ----AUGAAA 7321 UU|G|AAUUU GC-UG(U-GA AGAUG)CAGC UU-----UUU ACAACUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GA|--U-GCN AGG--AACU| <--------- ---------- 7441 ---------- ---------- --->AAAGA- GA-----UAU -Acuggaga- ua----aauU 7501 AAGGUAGGA- -gu------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uaa a)-------- --------uc 7681 gcAAUUGAAA AACUACU|u- ----cucuu- u-U-A-CGUC UCUU-Cau-- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------uuua cuUUU-C-UG -GCU-GU-UA GUUUAACUG( 8161 GGG)CG-GU- U|GCCUCC(- --------UA AAAAGUAAC- )GGAG-GU|G |A|GCAU-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AAgUUA 8401 -CG|--CU-- uuguga (auuuu---- )uuuucgcaa aa-------- ---------- 8701 ---------- ---------- ---------- ---ugAG|uu (-|-AAUA)a aac-uGC-GU 8761 A-AU-UUGAU UAAAU-UAC( -agacua--- )GUAAU-UUA G--------- ---------- 8821 ---------- --------GG GC-------- ---(uuauu- -)-------- ----GCC-UG 8881 C|---UAUAA UGAUC-CGGU GU-U------ ---------- UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUUUGA AU)AA|GACA 9001 UCGCUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U AAAUUCUGAG 9061 AG(U--UCCU )AUUAAAGAA --UUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGGU GG-UG(--CA -GA)AUCUGC CAAG-GGU|U UGGC(UGUUC )GCCAA-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-U(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A GA|A|<---- ---------- ---------- ---------- ---------- 9301 >UUAAG-AAA CG-AGG-CUG AGA-UCGGAU GC--(CAGU- AC(-GAGA)G GACC-)GAUU 9361 A--GA-<--- ---------- ---------- -------->A CUAGCCU-CU GGUUCGGCAU 9421 C|-UAC-UUU (aaaua)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AAG-GUAUAG AAGC--UACG CUAA-GCUGG Aua------- ---------- -------ggc 9601 uaauuuuuua auuaaaguuu (uuuagc--u -ugaa)u-aa -uu-agaagc ccuUUAG--c 9661 aucUC--G-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaauau|UU 9961 UAG(AAGACU A--)CUAAAU U--------- ---------- ---------- ------aauu 10021 u|gaaguuug ---------- ---------- ---------- ---------- ---------- 10081 ---------- ----cuguua uag------- ---------- --------(- ---------- 10141 --------gg cucuuuacga g)c-gua--- ---------- ---------- ---------- 10201 ----ccagcu u|u|cu-uua aaaaa----- ---------- ---------- -----auauu 10261 a--------- ---------- ---------- -agacucuua uuauuauuau au-------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.tetra 10775 bp RNA RNA ~?~???? DEFINITION mitochondria,Paramecium tetraurelia 7S+20S. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Paramecium tetraurelia 7S+20S. ORGANISM mitochondria,Paramecium tetraurelia 7S+20S. REFERENCE 1 (bases 1 to 40469) AUTHORS No information JOURNAL 5173-5181 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: K01749 Phylo:Mitochondria,Protozoan,Paramecium Modified from M. Schnares comments BASE COUNT 854 a 377 c 544 g 793 t 8207 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~----- -----uuugc agucu----- ---------- ---------- 241 ---------- ---------- ---------- -----aacaA AGCACUAGA- ----CGGAUG 301 |CCU--AAA| AAUCUUGG-U U|gagggcgu aa-------- -----aucu| -aaau(--ac 361 gau------) a|uuuguau- gUAAGC-|UU --ucuuu(-- ---------- ---------- 421 ugauau-)au agaa-----U UGCUUA---- ggaugua-ca agggc----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ccuugaAAAU |UUUAUGAAG 841 CGA(AACA)U CGUAGUA--- -AUAAA---- ---------- -----uc--- ---uaaaaca 901 uAAUUC(-AA CU)GA-G-AU |GUU-AA-A- -GUAA-C(-G GUGA)GUGAA --acaaagu- 961 -AGCUCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- -aaaauuaga aaagagggcu gaauuacuu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)aa guaa------ GC-|U(ACA) 1321 G--UGGG(UG AUAGC)CCCg ua--agcuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---GAGUAUA UAUUAU(--- ---------- 1561 uaacaaa)AU AAUAUAGAAA ------uguu u(-uuca-a) -aaaaaa--A AGCUA--AUA 1621 ---AAACCAA A-UU-UUGAU AGAA-AA--- -UAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAAAUU U(-gua---) GAAU------ ---------- ---------g uuuaAAAGA- 1801 UUCUG-AAAU CUAG-UGC-A G-<------- ---------- ---------- ---------- 1861 ----->UGAA ACAGUUAAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----guguu 2041 --)------- GUUUUAAC-G UACCUU(UU- GUAUA)AUGG |GCC-AACUA GU-----UU- 2101 AUAAAAUUAG CGA--gc--- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -uuaucaaau c)-------- -----g-cGU 2521 AAU-(-GAAA )--AU----- --(------) ---------- ---------G UUAAU-UUUA 2701 UAA-GACCCG AA-GUCAA-G UG-AUCUAAU CAU-GGC-UA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----agaag) ---------- 2821 --AUCGAA-C CC-AUAAAU( GUUGCAA-A) AUUU-CGGGA --GAAGCUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUUGACG AUAGCU-GGU UUUUC--GCG AA-AUC-UAU 2941 (-CUAC)GUA GA-GU-AUUU uuuU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------uc UUU|-UGUGC 3061 G|GGGUAG|U GUAAUCU--u uu-cuu--aa gaaga---(u cuga----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uc uu--uu-uuc 3301 gug--a--AG AAUCUUCC-- AAUA|-CGCA -U-U---AAA ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -au---aa-u -AAAUAAAAC GGACU--GA- GA-GU(-GCA 3481 AAG)AUUCUU GG-UC----G AGAGGG(AAA -CAG)CCC-A GACCG-U-AC -GA-UAA--- 3541 --AGU-GCAU -AAA-CA-A- UGCGAAGUA- ---------- -----aaag- aauuguuuuu 3601 aaa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- aaaau-AUCG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-A GGC(UUAGAA 3781 UC-A)-GCCA -GCCU|U(U- AA)A|GAAAG C(--GUAACA )GC|-UCAC- CAAUAGuaa-aa-a -ua-auu|-u uuaa------ ---------- ---------- ----auuaaa 3961 GCGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAGCAU UGU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCG| G--C-GG|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aacu--)--- ---------- -C-----GGU AGCGA-AA|- CG-UUUUGUA G---GUUGUU 4501 G--------A AGGUU-UAUU (GAGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UAG--GCU-G G|AGAU---| AUCAAAAUUG AUAAUGU-UG 4681 GC|AUGAGUA -AUA--GAC- AAA-AU-GU- (ucaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUUU-|UGU U-UGAU-AAG UUA--GGGUU -|----GCUU 4801 UGUUUu--GA ---------- ----(--UCA UC)U-U|-AC AAAGUG---- ---------- 4861 ---UGAUC-- -CGGUCUCUA A-U-U-U--- uuuAAAU(-a gau------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-AAG AU-GAGCU-- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CU 6481 ---AACACU- -(AACGCA)A G|UACUU-UA GUC-(GAG-C A-----)-GA UGACGACAA| 6541 |--AAGAG-C U--AAUGAUA -UUGA-AGGA ACUCGGCAAA AUUACU-UUG UAAC(UUCG- 6601 )GGAUAA-AA AGU|gc---- ---------- -----(guca ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 --gc|a(aac )aaaaaaaug GGGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CAUA-AG 6841 AUUUUG|CA- -AAAUU---- ---------- (--uaau--- ------)--- ---------- 6901 UAUGAUGUA- UAA-AAUCUG ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UUGUCA-UGC AAAGUU-UU- 7021 --AACGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u agc)----gC UGUU--GAUA A-CAAGCA-| 7141 GC-AAUA-AA C-|GG-C|-G -GCCAU-(AA CUCUG)AUGG UC|C(UAA)- GG-UAGCAAA 7201 AUC-CC-U-U |GACGGG(-U AAGU-)UCCG UC|CU-GCAC GAAUGGAGUA A-CGACUGCC 7261 CU-------- ---------- -------ACU GUCUCCAAUA UCAG-CU-CU ----AUGAAA 7321 UU|G|AAUUU GC-UG(U-GA AGAUG)CAGC UU-----UUU ACAACUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GA|--U-GCU AGG--AACU| <--------- ---------- 7441 ---------- ---------- --->AAAGG- GA-----UAU -Acuggaga- ua----aauU 7501 AAGGUAGGA- -gu------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uaa a)-------- --------uc 7681 gcAAUUGAAA AACUACU|u- ----cucuu- u-U-A-CGUC UCUU-Cau-- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------uuua cuUUU-C-UG -GCU-GU-UA GUUUAACUG( 8161 GGG)CG-GU- U|GCCUCC(- --------UA AAAAGUAAC- )GGAG-GU|G |A|GCAU-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AAgUUA 8401 -CG|--CU-- uuguga (auuuu---- )ucuuugcaa aa-------- ---------- 8701 ---------- ---------- ---------- ---ugAG|uu (-|-AAUA)a aac-uGC-GU 8761 A-AU-UUGAU UAAAU-UAC( -aaacua--- )GUAAU-UUA G--------- ---------- 8821 ---------- --------GG GC-------- ---(uaauu- -)-------- ----GCC-UG 8881 C|---UAUAA UGAUC-CGGU GU-U------ ---------- UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUUUGA AU)AA|GACA 9001 UCGCUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U AAAUUCUGAG 9061 AG(U--UCCU )AUUAAAGAA --UUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CU-UGGU GG-UG(--CA -GA)AUCUGC CAAG-GGU|U UGGC(UGUUC )GCCAA-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-U(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A GA|A|<---- ---------- ---------- ---------- ---------- 9301 >UUAAG-AAA CG-AGG-CUG AGA-UCG-AC GC--(CAGU- AC(-GAGA)G GACC-)GACU 9361 A--GA-<--- ---------- ---------- -------->A CUAGCCU-CU GGUUCGGGAU 9421 C|-UAC-UUU (aaaua)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AAG-GUAUAG AUGC--UAUG CUAA-GCUGG Aua------- ---------- -------agc 9601 uaauuuuuua auuaaaauuu (uuuagc--u -uaaa)g-aa -uu-agaagc uuuUUAG--c 9661 aacUC--G-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaguau|UU 9961 UAG(AAGACU A--)CUAAGU U--------- ---------- ---------- ------aauu 10021 u|gaagguag ---------- ---------- ---------- ---------- ---------- 10081 ---------- ----cuguua uag------- ---------- --------(- ---------- 10141 --------gg cccuuaacgg g)c-gua--- ---------- ---------- ---------- 10201 ----ccagcu c|c|cc-uua aaaaa----- ---------- ---------- -----auacu 10261 a--------- ---------- ---------- -agacucuua uuauuauuau au-------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.pyr.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Tetrahymena pyriformis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Tetrahymena pyriformis. ORGANISM Mitochondria Tetrahymena pyriformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M58011 BASE COUNT 997 a 280 c 414 g 904 t 8180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~GUA-G UAAA------ -aau------ ---------- ---------- 241 ---------- ---------- ---------- -----aauaA AGCAUUAAA- ----UGGAUG 301 |CCU--AGA| AUU-UAAA-U U|uuuucg-- ---------- -----uaaa| caaau(-uua 361 cgau-----) a|ucuauuu- aGUAAAU|Aa u-auauu(-- ---------- ---------- 421 gauauu-)uu uauu-----U AUUUGC---A AUUA-au--- -agau----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->u aaaaauUAAU |UUAACGAAG 841 UGA(AACA)U CACAGUA--- -GUUAU---- ---------- ---------- ----UUUUAA 901 AAACUC(-AA UU)GA-G-AA |UAG-UAU-- ---AG-U(-G GUGA)GCUUA --UACUAUA- 961 -AGUUUU------ 1201 ---------- ---------- ----aaaauu gaaaauuuu< ---------- ---------- 1261 ---------- ---------- ---------> (agaa--)ua aauu------ AC-|C(AAA) 1321 G--UAGG(UG AAAGU)CCAg ua--aauuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---UAGUAAA UUUCAA(--- ---------- 1561 uaaguuu)UU GAAAUUGAAA ----auUAGA A(AUCUA-C) -UUCUA---A AACUU--AAA 1621 ---AAAUUUA A-AU-UCUAU AGUA-AA--- --AAGUACC( -GCGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAG--auu -(-uuu---) -aau------ ---------- --------au cuuAAAAGA- 1801 ACCUA-AAAU UUAA-UGC-U A-<------- ---------- ---------- ---------- 1861 ----->-AAU ACAGUUAAGG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----uuuau 2041 --)------- GUUUUAAC-G UACCUU(UU- GCAUA)AUGG |GCU-AGCGA GU-----UU- 2101 AUAUAAUUAG CGA--guaau u-uau--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -----aauaa a)----auaa u-auua-cGA 2521 AUC-(-GAUA )--GA----- --(------) ---------- ---------G UUAAU-UAUA 2701 UAA-GACCCG AA-GCUAA-G UG-AUCUAAU UAU-GGU-UA GAUUAAG--- G-GU--A--- 2761 -(-------- ---------- ---------- ---------- -----uuua) ---UACCUAA 2821 GGAUCGAA-C UC-UUAAAU( GUUGCAA-A) AUUU-UGGGA --UAAACUG- UAAUUAG-GG 2881 GU(G-AAAG) GCU-UAUC-A A-ACUUAGUU AUAGCU-GGU UUUCC--ACG AA-ACC-UAU 2941 (-UUAA)GUA GG-GU-GAUA UUUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------au uau|-AAAAU 3061 U|AGGUUU|A AAUAACU--a ua-ucu--au aauuaa--(u aug-----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--uua au--ua--ua 3301 aaa-uu--AG UAUAUAAU-- AAUU|-AGUU -U-U---auu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -u----AA-A -UAUU-AAUC AGACU--AU- UA-GC(-GCU 3481 AAG)GUUUAU AG-UC----A AGAGAG(AAA -CAG)CUC-A GAUUA-A-AC -AA-UAA--- 3541 --GGU-CUAC -AAA-AG-U- AAAUAAUUU- ---------- --uggaga-- UUGUUUUUAU 3601 U-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UUAUC-AAUA A<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-A GGC(UUGGAA 3781 GC-A)-GCCA -UCAU|U(U- UA)A|AAAAG C(--GUAAAA )GC|-UUAA- UAUUGAUAU-AA-A -AA-UAA|-u cau-aaau-- ---------- ---------- ----gaaaau 3961 agauu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- --aaUUUUUA CUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--UUG| A--U-AA|AU C--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(g 4441 aaa---)--- --------GA -U-----GGU AGUGG-AA|- CA-UUUUGUA U---AA-au- 4501 ---------A AAUAA-AAUU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UUU--UAU-A U|c-UU---| AUCAAUAUAG AUAAUGC-UA 4681 GC|AUGAGUA -GUA--GAC- AUA-AU-GU- (gagaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUAU-|CGC C-UGAU-GUA CAA--GGGUU -|----GCUA 4801 AAUUU---GA ---------- ----(--UAA UC)U-U|-AU UUAGUG---- ---------- 4861 ---UAAAU-- -CGGUUUCUA A-A-A-U--- -uuAAAU(-G UAU------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-UUG AU-GA-AUA- CGAA(----- ---------- ---------- 5041 ---------- --auauaaaa ----)UUCUU |---AA|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---uaaucua uuaaauauau uacauaaaau uuuuuguaau auauuuauuu aauggauuag 6421 uugcuggaaa uguuuauauu uuuuuu>--- ---------- ---------- -ACCGUA|CU 6481 ---AACUCU- -(AACACA)A G|UGUAC-AA GUA-(GAA-U A-----)-UA UAAUGGCGA| 6541 |--AGGAG-U A--AAAAGUA -UUGA-AGGA ACUAGGCAAA UUGACU-CUG UAAC(UUCG- 6601 )GGAGAA-AG AGG|GCU--- ---------- -----(uua- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 -AGC|a(acu )a--aaaaGA GAGAGUAG|C GA---CUG-U UU(AAUAA)A AA-CAUA-AG 6841 AUUUUG|CU- -AAAUU---- ---------- (--uaaa--- ------)--- ---------- 6901 UACGAAGUA- UAA-AAUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGCAA-GGU GAACAA-AU- 7021 --UUUGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aac)----gC UAAA--AU-U U-UAAACC-| 7141 CC-AGUA-AA C-|GG-C|-G -GCCGU-(AA CCCUG)ACGG UC|C(UAA)- GG-UAGCAAA 7201 AUU-CC-U-U |GGCGGG(-U AAGU-)UCCG UC|CU-GCAU GAAUGGUGUA A-CGACUGCU 7261 CU-------- ---------- -------GCU GUCUCCAAUA CUAG-CU-CU ----ACGAAA 7321 UU|G|AAUUU UC-CG(U-GA AGAUG)CGAC AAU----AUU ACAACUAGAC GGGAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GU|--U-AUC UGU--AAAU| <--------- ---------- 7441 ---------- ---------- --->AAUUU- UU-----UUU -UAUAAUua- acu---ag-a 7501 caAGUAGGA- -AAU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uua u)-------- -------AUU 7681 AAAAAUGGAA AACUACU|u- ----aAUUA- U-A-U-UUAA AAAU-UAAAA ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------auuu ugUUA-U-AG -AAA-GA-CA GUUUGACUG( 8161 GGG)CG-GU- C|UCCUCC(- --------UA AAAAGUAAC- )GGAG-GA|G |U|AUAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AA-CUC 8401 -GG|ggua-- ucuua-<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uuuuaau-- )-----UAAG au-------- ---------- 8701 ---------- ---------- ---------- --caaua|UU (A|AAAUG)A AUUUUAC-UG 8761 A-GU-UUGAU UAGAG-UAC( -uuacaa--- )GUAUU-CUA A--------- ---------- 8821 ---------- --------GG AU-------- ---(AUAU-- -)-------- ----GUC-UA 8881 U|---CAUAU UGACC-CGAU AU-A------ ---------- AUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUGUAG AA)AA|UAUA 9001 UCGAUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U GAGUUUUGAG 9061 AG(U--UCUU )AUUAAUAAA --CUCGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGAU GG-UG(--GA -CA)AUCUAU CAAG-GGU|C CGGC(UGUUC )GCCGG-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-C(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A AU|U|<---- ---------- ---------- ---------- ---------- 9301 >AUAAG-AAA AU-AAA-UAA GAA-UUA-AC UU--(UAGU- AC(-GAGA)G GACU-)AGGA 9361 A--AA-<--- ---------- ---------- -------->U UUAAUCA-CU GGUUUGAAAA 9421 U|-UAU-UUU (-----) 9541 AAA-GUAUGG UUUU--UAAG CUAC-AUUAA A-C------- ---------- -------AAA 9601 ---------- -AUAAUUGCU (GAAUAU--U AUAUA)A-GC -AA--GAAUU UAACUUA--- 9661 UAUUA--U-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaaauu|UU 9961 UUA(AAGACU A--)UAUUAU U--------- ---------- ---------- ------UAAG 10021 U|UUUUA-UA ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UAAGUGU AGU------- ---------- --------(- ---------- 10141 ---------- -------uau a)ACUAA--- ---------- ---------- ---------- 10201 ----CGAAUA U|A|UAAAAA ACUua-u--- ---------- ---------- -----aauuu 10261 a--------- ---------- ---------- ---------- ---AUA---- ---UUUACUA 10321 CAGUU---|U AGUUUAUA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.pyr.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Tetrahymena pyriformis. ACCESSION No information KEYWORDS No information. SOURCE Tetrahymena pyriformis. ORGANISM Tetrahymena pyriformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M58010 BASE COUNT 994 a 282 c 416 g 903 t 8180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~GUA-G UAAA------ -aau------ ---------- ---------- 241 ---------- ---------- ---------- -----aauaA AGCAUUAAA- ----UGGAUG 301 |CCU--AGA| AUU-UAAA-U U|uuuucg-- ---------- -----uaaa| caaau(-uua 361 cgau-----) a|ucuauuu- aGUAAAU|Aa u-auauu(-- ---------- ---------- 421 gauauu-)uu uauu-----U AUUUGC---A AUUA-au--- -agau----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->u aaaaauUAAU |UUAACGAAG 841 UGA(AACA)U CACAGUA--- -GUUAU---- ---------- ---------- ----UUUUAA 901 AAACUC(-AA UU)GA-G-AG |UAG-UAU-- ---AG-U(-G GUGA)GCUUA --UACUAUA- 961 -AGUUUU------ 1201 ---------- ---------- ----aaaauu gaaaauuuu< ---------- ---------- 1261 ---------- ---------- ---------> (agaa--)ua aauu------ AC-|C(AAA) 1321 G--UAGG(UG AAAGU)CCAg ua--aauuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---UAGUAAA UUUCAA(--- ---------- 1561 uaaguuu)UU GAAAUUGAAA ----auUAGA A(AUCUA-C) -UUCUA---A AACUU--AAA 1621 ---AAAUUUA A-AU-UCUAU AGUA-AA--- --AAGUACC( -GCGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAG--auu -(-uuu---) -aau------ ---------- --------au cuuAAAAGA- 1801 ACCUA-AAAU UUAA-UGC-U A-<------- ---------- ---------- ---------- 1861 ----->-AAU ACAGUUAAGG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----uuuau 2041 --)------- GUUUUAAC-G UACCUU(UU- GCAUA)AUGG |GCU-AGCGA GU-----UU- 2101 AUAUAAUUAG CGA--guaau u-uau--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -----aauaa a)----auaa u-auua-cGA 2521 AUC-(-GAUA )--GA----- --(------) ---------- ---------G UUAAU-UAUA 2701 UAA-GACCCG AA-GCUAA-G UG-AUCUAAU UAU-GGU-UA GAUUAAG--- G-GU--A--- 2761 -(-------- ---------- ---------- ---------- -----uuua) ---UACCUAA 2821 GGAUCGAA-C UC-UUAAAU( GUUGCAA-A) AUUU-UGGGA --UAAACUG- UAAUUAG-GG 2881 GU(G-AAAG) GCU-UAUC-A A-ACUUAGUU AUAGCU-GGU UUUCC--ACG AA-ACC-UAU 2941 (-UUAA)GUA GG-GU-GAUA UUUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------au uau|-AAAAU 3061 U|AGGUUU|A AAUAACU--a ua-ucu--au aauuaa--(u aug-----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--uua au--ua--ua 3301 aaa-uu--AG UAUAUAAU-- AAUU|-AGUU -U-U---auu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -u----AG-A -UAUU-AAUC AGACU--AU- UA-GC(-GCU 3481 AAG)GUUUAU AG-UC----A AGAGAG(AAA -CAG)CUC-A GAUUA-A-AC -AA-UAA--- 3541 --GGU-CUAC -AAA-AG-U- AAAUAAUUU- ---------- --uggaga-- UUGUUUUUAU 3601 U-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UUAUC-AAUA A<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-A GGC(UUGGAA 3781 GC-A)-GCCA -UCAU|U(U- UA)A|AAAAG C(--GUAAAA )GC|-UUAA- UAUUGAUAU-AA-A -AA-UAA|-u cau-aaau-- ---------- ---------- ----gaaaau 3961 agauu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- --aaUUUUUA CUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--UUG| A--U-AA|AU C--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(g 4441 aaa---)--- --------GA -U-----GGU AGUGG-AA|- CA-UUUUGUA U---AA-au- 4501 ---------A AAUAA-AAUU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UUU--UAU-A U|c-UU---| AUCAAUAUAG AUAAUGC-UA 4681 GC|AUGAGUA -GUA--GAC- AUA-AU-GU- (gagaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUAU-|CGC C-UGAU-GUA CAA--GGGUU -|----GCUA 4801 AAUUU---GA ---------- ----(--UAA UC)U-U|-AU UUAGUG---- ---------- 4861 ---UAAAU-- -CGGUUUCUA A-A-A-U--- -uuAAAU(-G UAU------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-UUG AU-GA-AUA- CGAA(----- ---------- ---------- 5041 ---------- --auauaaaa ----)UUCUU |---AA|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---uaaucua uuaaauauau uacauaaaau uuuuuguaau auauuuauuu aauggauuag 6421 uugcuggaaa uguuuauauu uuuuuu>--- ---------- ---------- -ACCGUA|CU 6481 ---AACUCU- -(AACACA)A G|UGUAC-AA GUA-(GAA-U A-----)-UA UAAUGGCGA| 6541 |--AGGAG-U A--AAAAGUA -UUGA-AGGA ACUAGGCAAA UUGACU-CUG UAAC(UUCG- 6601 )GGAGAA-AG AGG|GCU--- ---------- -----(uua- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 -AGC|a(acu )a--aaaaGA GAGAGUAG|C GA---CUG-U UU(AAUAA)A AA-CAUA-AG 6841 AUUUUG|CU- -AAAUU---- ---------- (--uaaa--- ------)--- ---------- 6901 UACGAAGUA- UAA-AAUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGCAA-GGU GAACAA-AU- 7021 --UUUGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aac)----gC UAAA--AU-U U-UAAACC-| 7141 CC-AGUA-AA C-|GG-C|-G -GCCGU-(AA CCCUG)ACGG UC|C(UAA)- GG-UAGCAAA 7201 AUU-CC-U-U |GGCGGG(-U AAGU-)UCCG UC|CU-GCAU GAAUGGUGUA A-CGACUGCU 7261 CU-------- ---------- -------GCU GUCUCCAAUA CUAG-CU-CU ----ACGAAA 7321 UU|G|AAUUU UC-CG(U-GA AGAUG)CGAC AAU----AUU ACAACUAGAC GGGAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GU|--U-AUC UGU--AAAU| <--------- ---------- 7441 ---------- ---------- --->AAUUU- UU-----UUU -UAUAAUua- acu---ag-a 7501 caAGUAGGA- -AAU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uua u)-------- -------AUU 7681 AAAAAUGGAA AACUACU|u- ----aAUUA- U-A-U-UUAA AAAU-UAAAA ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------auuu ugUUA-U-AG -AAA-GA-CA GUUUGACUG( 8161 GGG)CG-GU- C|UCCUCC(- --------UA AAAAGUAAC- )GGAG-GA|G |U|AUAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AA-CUC 8401 -GG|ggua-- ucuua-<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uuuuaau-- )-----UAAG au-------- ---------- 8701 ---------- ---------- ---------- --caaua|UU (A|AAAUG)A AUUUUAC-UG 8761 A-GU-UUGAU UAGAG-UAC( -uuacaa--- )GUAUU-CUA A--------- ---------- 8821 ---------- --------GG AU-------- ---(ACAU-- -)-------- ----GUC-UA 8881 U|---CAUAU UGACC-CGAU AU-A------ ---------- AUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUGUAG AA)AA|UAUA 9001 UCGAUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U GAGUUUUGAG 9061 AG(U--UCUU )AUUAAUAAA --CUCGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGAU GG-UG(--GA -CA)AUCUAU CAAG-GGU|C CGGC(UGUUC )GCCGG-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-C(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A AU|U|<---- ---------- ---------- ---------- ---------- 9301 >AUAAG-AAA AU-AAA-UAA GAA-UUA-AC UU--(UAGU- AC(-GAGA)G GACU-)AGGA 9361 A--AA-<--- ---------- ---------- -------->U UUAAUCA-CU GGUUUGAAAA 9421 U|-UAU-UUU (-----) 9541 AAA-GUAUGG UUUU--UAAG CUAC-AUUAA A-C------- ---------- -------AAA 9601 ---------- -AUAAUUGCU (GAAUAU--U AUAUA)A-GC -AA--GAAUU UAACUUA--- 9661 UAUUA--U-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaaauu|UU 9961 UUA(AAGACU A--)UAUUAU U--------- ---------- ---------- ------UAAG 10021 U|UUUUA-UA ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UAAGUGU AGU------- ---------- --------(- ---------- 10141 ---------- -------uau a)ACUAA--- ---------- ---------- ---------- 10201 ----CGAAUA U|A|UAAAAA ACUua-u--- ---------- ---------- -----aauuu 10261 a--------- ---------- ---------- ---------- ---AUA---- ---UUUACUA 10321 CAGUU---|U AGUUUAUA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (3)-FM-GRP 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (4)-FUNGI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.S.pombe 10775 bp RNA RNA ~?~???? DEFINITION Mitochondria Schizosaccharomyces pombe. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Schizosaccharomyces pombe. ORGANISM Mitochondria Schizosaccharomyces pombe. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X06597,X54421 Schizosaccharomyces pombe mt LSU rRNA Lang BF, Cedergren R, Gray MW (1987) The mitochondrial genome of the fission yeast, Schizosaccharomyces pombe. Sequence of the large-subunit ribosomal RNA gene, comparison of potential secondary structure in fungal mitochondrial large-subunit rRNAs and evolutionary considerations. Eur. J. Biochem. 169:527-537 BASE COUNT 1050 a 383 c 492 g 901 t 7949 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~aaugu-g uaau------ -uugaaucaa uuucuauccu uuuaaaaaua 241 caucauaaag uguacuuuuu uaaggauuua guuauUAAAG GAUUAAUUA- ----UGGAUU 301 |GCU--AAC| CAG-UUAA-U A|uuaag--- ---------- -----agga| -agcu(-u-u 361 uaa------) a|gcuuaau- ucagcaa|u- -------(-- ---------- ---------u 421 uuuua--)-- ---------a uuguugu-uu cuccuaa-ag g--------- -----(uaaa 481 )cca|----- --(cua--)- ---------- aaaagaaaga ac-------- -(-uuc-g)- 541 --------gg uuuuucuuua a--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---aauAAAC |UAGAGGAAC 841 UGA(AUCA)U CUUAGUA--- -CUCUA---- ---------- ---------- ---AGGAAAA 901 UAAAAU(-AA CA)AU-G-AU |UAU-UGUA- -GUAG-U(-G GCGA)ACGAA -UCAUUAAU- 961 -AGUCUA------ 1201 ---------- ---------- -uauuaaaaa aaauuuuu-< ---------- ---------- 1261 ---------- ---------- ---------> (-acca-)-a agaa------ ga-|g(aaa) 1321 a---aug(gg uucuu)cauu uu-------- ---------- ---------- u-uaAAGUAAA AUGGGA(--- ---------- 1561 --acuua)AC CUGUUUGAAU ----auUGGA G(AAccaaU) -CUCCAA--A GACUA-AAUA 1621 ---UA-UUAA C-UGAGUGAU AGUG-AA--- --GAGUACC( -GUAA-)GGG ---AAA-GC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -aAUG-AAAU AGUU-AAU-C U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCGAAGAUAG Ugaau---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-uuuaaaua 2041 --)---aauu AUUAUCUU-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UU- 2101 UAAUUAUUUG CAA------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 gcu-(-gaaa )--agc---- ---------- ---------- ------aaaG UAAAU-AAUU 2701 AAA-GACCCG AA-ACCUG-A CG-AUCUUAC CAU-GAA-CA GAUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaag) ---------- 2821 -GAUCGAA-C CA-GUAAUC( GUUGCAA-A) GAUU-UUGGA --UGAUUUG- UGGUAAG-GG 2881 GU(G-AAAU) GCU-AAUC-G A-GUUAGGUG AUAGCU-GGU UGUCC--ACG AA-ACC-AUU 2941 (-UUAA)GAU GG-GC-ACUU CAAA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- aac|-UAAAU 3061 G|AGGUAC|A GAAAUuu-AU UG-ccu---- ---------- ---------< u--------- 3121 ---------- -caaga-ag- ---------- ---------- ---------- ---------- 3181 ---------- -------(uu u-)------- ---------- ------uuuc -uuguua--- 3241 ---------- ------auag gggauc---u aaa-gauuua ccua>----- --------ag 3301 gCGuuAa-uu AAUCUCGG-- AAUA|-aauu -u-a--aaaa ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -agu--UU-G -AAGU-AGUU AGACA--AU- UG-GC(-GAU 3481 AAG)GUCAAU AG-UC----A AAAGAG(AAA -CAG)CUC-A GAUCA-A--A -GA-uuuaa- 3541 --AGU-UCCC -CAAUUU-A- AGUUAAGUG- --------AU UUAAAGAUA- GUCUUACUCC 3601 U-U------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUUCA-AUAA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAUAU-G GGC(UUGGAA 3781 AC-A)-GCCA -UUAU|C(U- AA)G|GAGUA C(--GUAAUA )GU|-UCAC- UUAUCCuGG-AG-A -AA-GGC|-A UCAAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACUU AAU------- ---------- ---------- ---------- 4081 -------|AC UUAA--ACU| U--U-GG|CA Guauuu---- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aa----)--- --aaaua-CU -G-----GGU AGUGG-AC|- CG-AUCUAUA U---AAAgau 4501 g--------A AGAUG-AACU (uuua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AG UUU--AUU-G G|AUUU---| AUUAGAUGCG AGAAUGC-UG 4681 AC|AUAAGUA -ACGU-AAA- AAA-AG-GU- (caaau---- ---------- ---------- 4741 ---------- -----)-U-C CUUUU-|CAC C-GAAA-ACU GAA--GGGUU -|----UUGA 4801 CUUAA---AA (----- --)U-U|-AA GUCAAA---- ---------- 4861 ---uaaagua aCAAUCUCUA A-G-C-U--- ---a---(au aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >----u---- -----A-GUG AU-GAGUA-- ----(aaucu ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------u |aa<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- -cggaucuua aaaua----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uauuCAGGAA ----AAUuau ccg<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--u u----a---- ------uuuu aAUUGUA|CC 6481 C--UAAACC- -(GACACU)G G|UCAGU-UA AGA-(GAA-U A-----)-UC UUAAGGUGU| 6541 |---UGAG-A G--AACUAUG -CUUA-AGGA ACUCGGCAAA UUAGCU-CUG UUAC(UUCG- 6601 )GUAUAA-AG AGU|GUUCAU ---------- -----(-uau uuu)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ -------AUG 6781 -AAC|-(uca )a--uaaaGA GAACCCUA|C AA---CUG-U UU(ACUUA)A AA-CACA-GC 6841 ACAUUG|CC- -AAAAU---- ---------- (-uaaaaa-- ------)--- ---------- 6901 AUUAUAGUA- UAA-UGUGUG AGGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G UCCUAU-GGU UAACAA-Uac 7021 --gaacuu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aac)----ga guuu--ua-C G-GAACCC-| 7141 AG-GAUA-AA U-|AG-C|-G -GCUUU-(AA CUCUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCCGA(-U AAAU-)ACGG UC|CC-GCAU GAAUGACUUA A-UGAUAGGG 7261 UU-------- ---------- -------GCU GUCUCAAGCA CAGA-CU-CA ----GUGAAA 7321 UU|G|UAAUU GC-UG(U-GA AGAUA)CAGU GUU----CCC UCAGCUAGAC GGAAAG-ACC 7381 CUG-GC-|-A GCUUU--ACG AU|--A-GUU AAU--UAUU| gcuuu- au----cuau ----uuuug- uuc---AGUA 7501 UAGAGGuUA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---guuu a)-------- -------GAC 7681 AAAAAUGAGA UAuCCUC|c- ----uuaa-- ----a-uaau aaag-aucuu uaaagu---- 7741 -----(---u uaa-)----- ---------- ---------- ---------- ----acu-<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->UGAC AUUAA-U-UA -AUU-GA-UC GUUUCUGUG( 8161 GGG)CG-CA- G|GCCUCA(- --------UA AAAAAUAAC- )UGAG-GU|A |U|CCUA-|< 8221 gaucuaua-- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->U-AA-UUU 8401 -GU|--cua- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----gac|GC (A|UAUAA)G CAU-AAA-UA 8761 G-GU-UAAAC UGAAA-GAC( -uaacaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AU-------- ---(GUAA-- -)-------- ----AUA-GG 8881 G|---UUAAA UGAUC-caca uu-gaaacac uaauuuagug UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUAUGG AA)AA|CAAU 9001 GUGCUCAAU- |GAG-cgAAG UUACGC|CAG G|GAUAACAG |G-UUA-A-U AGAGAGCUAA 9061 AG(U--ACAA )AUCAAAUUC --UCUGUUUG AC-ACCUCGA UGUC|GA--C U|C|AACCU| 9121 AU-C--UCCG GU-UG(--UA -GC)AGAUUG GAAG-GGU|U AGAC(UGUUC )GUCUAUUUA 9181 A--AAGGUU- --ACGUGAGU UGGGUUAAAU CC|GU-C(GU AA)GACAGGA UGGUUCCUAU 9241 CU|ACUGA-G GG|A|<---- ---------- ---------- ---------- ---------- 9301 >AAAAU-AAG CA-AAU-UAA AAU-UUA-UC UU--(UUGU- AC(-GCAA)G GAUU-)UAGA 9361 U--AA-<--- ---------- ---------- -------->U UCAAUCU-CU AGUUUAACUA 9421 U|-UGU-UAC ------- 9541 GUA-GCACGG UAGU--AAAG CCAA-AUUGA ACA------- ---------- -------AAU 9601 ---------- --UAAAAACU (GAAAGC--A UCUCA)A-GU -UU-GAAAUU UA-UUUA--- 9661 -AAGA--G-- -CUUAU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- --auuaa|GA 9961 AAG(UAGAAA A--)CUUUCc aa-aaggaca uc-------- ---------- ------cuUA 10021 G|GAuguaca ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---aauccuu auuuuaguaa aucauuguuu --------(a gauagauuua 10141 guuaauuuuu uaaccaaagg -)-------- ---------- ---------- ---------- 10201 -----gauua u|c|ucuUUG CUAau-u--- ---------- ---------- ----uuuuaa 10261 auaacuggaa auu------- ---------- ---------- -gccu----- -aauuacaca 10321 auuuuuuu|u ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.urtic 10775 bp RNA RNA 17-DEC-1994 DEFINITION Mitochondria Penicillium urticae str. NRRL2159A; S5 protein. ACCESSION D14567 KEYWORDS S5 protein. SOURCE Mitochondria Penicillium urticae str. NRRL2159A. ORGANISM Mitochondria Penicillium urticae. REFERENCE 1 (bases 1 to 6463) AUTHORS Yamamoto,H., Naruse,A. and Sekiguchi,J. TITLE Characterization and nucleotide sequence of the large mitochondrial rRNA gene of Penicillium urticae JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: NRRL 2159A Sequence information (bases 1 to 10775) Corresponding GenBank entry: D14567 Submitted (02-MAR-1993) to DDBJ by: Junichi Sekiguchi Department of Applied Biology Shinshu University Faculty of Textile Science & Technology 3-15-1 Tokida, Ueda-shi Nagano 386 Japan Phone: 0268-22-1215 Fax: 0268-22-4079. NCBI gi: 602773 BASE COUNT 1671 a 538 c 746 g 1527 t 6293 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ aaaauuaaac 61 uaauguaaau acauuauagg uauuacaggu uaguguccgg ugguuggucg cuucauuugg 121 guuggagauu guuuauguuc gaaucauaau aaccugaaaa cuaauauagg cuuaauaaua 181 ugggccaaua aa>gauga-u auguac---- --cauaua-- --cc-ucuug a--------- 241 ----gaaa-- ---------- -ucaagacaa guauaUAAAG AAACUAUUA- ----UGGAUG 301 |GUU--AGC| UAU-AUAU-U U|caagaua- ---------- --aguauau| -cuag(ggaa 361 caacauaaa) c|uagaaau- cauagag-aa a-ucuaauua ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ----uaAGAC |AAAGUGAAU 841 UGA(AAUA)U CUUAGUA--- -ACUUU---- ---------- ---------- ---AGUAAAA 901 GAAAUC(-AA AC)GA-G-AU |UGU-UAU-- -UUGG-U(-G -UCU)UCUGA -AUAGCAAA- 961 -AGCCUA--AAGUAUA ACGGAA(--- ---------- 1561 ---aaaa)AU CUGUUGAAAA ----auAGGG G(AACCU-U) -CCUCUA--A GGCUA-AAAA 1621 ---AA-AUAU A-UAAGCGAU AGAG-UA--- -ACAGUACC( -GUGA-)GGG ---AAAUAC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -cCUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG Uua-----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---aauuuua aauaaa---> (--------- 2041 --)-----ua AUAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUAGAUG CAA--guaa- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------c aucucuuuuc uaaaaauuau 2461 acauacuaaa uauguaauau uauacaaaaa augauugcua g)-------- ---uua-c-- 2521 ----(----- )-----uuau g-(aaaa--) -a-auga--- -----auuaG UAUCU-AGAA 2701 UUA-GACCCG AA-GGCUA-G UG-AUCUUAC CAU-GGU-CA GGGU------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------a--- 2821 -GCCCGAA-C GG-GUUAUC( GUUGUAA-A) GAUA-UCCGA --UGAACUG- UGGUAAGUUA 2881 GU(G-AAAG) ACA-AAAC-U G-ACUAGU-- AUAGCU-GGU UUUCC--GCG AA-ACC-UAU 2941 (-GUAA)GUA GG-UA-AUUU AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUGugau cu-cg----- ---------- ---------< gacaa-uau- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- --------cu aag------- ---------- ---------- ---------- 3241 aua----uuu gucaacaucg ggggguug-u agugacuuua ccgg>----- ---------a 3301 gag-uau-uU GCACUCGG-- AAGG|-GCAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--GU-U -AAAU-AAUC GGACA--UA- GU-GC(-GAU 3481 AAG)GUUGUA UG-UC----U AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UGUUAAGUG- --------AA AUUAAGGAU- GUUUUUUUUU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAACA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAAU-A GGC(UUAGAA 3781 GC-G)-GCCA -UUUU|U(U- GA)A|GACCU C(--GUAACA )GA|-GCAC- UGAUUAuAG-GA-A -AA-AAC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|AC Acaaa--gaa au---auuaa a-gc-uuuag 4141 uagga-gcuu auuguuauua augagu---- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --aauug-UG -G-----GGU AGCGG-AA|- CA-UUGGAUU A---AAC--- 4501 ---------- ---------- (-------)< --aaaauauu aauauuuuuc uuaaaauauu 4561 aaaaaaaucu cgaauuaaug cacauuaaug aacacaauug caauagauug uguuuuuauc 4621 uacuauauga gaaucu->-- ---------- -|-GUU--a| AAUCCAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AGG-CU---- (uuu------ ---------- ---------- 4741 ---------- -----)---- AGCCU-|CGC C-UGAA-GCU UAU--GGUU- -|-------- 4801 ---------- (----- --)---|--- ---------- ---------- 4861 ---------- -CGGUGUCUA AAA-A-A--- --auua-(au caaaaga--- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-uaau---- -----U-UUG AU-GAc--g- uuuu(auguu (uuuuuauau aau)aauacc 5041 ---------- ---------- ----)aaaac |-----|--- ---------- |---- -uuuuuu-ua auaac----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uauacuggua ----aa-aaa aaa--- -uaua----- ---------- -ACCGUA|CC 6481 ua-GAAACU- -(AACUCA)A G|UAAGC-AA GUA-(GAG-A A-----)-UA CAAAGGCGU| 6541 |--UUGAG-A G--AACAAUC -AUUA-AGGA ACUCGGCAAA UUGACU-CUG UACC(UUCG- 6601 )GAAUAA-GG AGG|------ ---------- ---------- ---------- ---------- 6781 ----|A(UCA )U--GAAAUA AUGUUGUA|C GA---CUG-U UU(AAUAA)A AA-CACA-GC 6841 ACUCUG|CA- -AAGAU---- ---------- (--aaaaa-- ------)--- ---------- 6901 AUCAAAGUA- UUG-AGUGUG AUGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G UCGGCU-GGG UAACGG-Auc 7021 u-ACCUUg-a u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua uua)ac--UG AGGUuuUGAA G-GACACC-| 7141 CC-GAUU-AA U-|GG-C|-G -GCCUU-(AC CUAUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUA-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUGACUUA A-CGAUGCAA 7261 CA-------- ---------- -------GCU GUCUCGAUGA UUGU-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGU UUA----CCU CUAGAUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUA| gagu-- ga-----aau -uuaggaUG- auuuauAGUG 7501 UAUAAGGUA- -GUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---guuu a)-------- -------GAU 7681 AAUAAUGAAA CACCuuu|au ucgaauccu- u---a-uaua uacu-c---- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->--uu aaUGA-U-UA -GAA-GG-CA GUUUAUGCG( 8161 GGG)CA-CA- G|AUCCCA(- --------CA AAAAGUACC- )UGGGUAU|A |U|CCAA-|< 8221 -aguucauau uguaaacuug uauauuuaua uacaaauauu uuaauuuguu cuaauuauua 8281 uuauaauuau acaguuauua uucgauuaaa uucaauaauu auuuuuauuu uu-------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AG-UAA 8401 -GA|--UU-- uuaa-- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GU (U|UAAUG)G CUA-aau-cU 8761 U-GC-UUUAC UGUUU-GAC( -cuacaa--- )GUCUA-UCA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A UGAUC-ACAA GA-U------ ---------- GCA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAAGG AA)AG|GUCU 9001 UGG-AUUAU- |AGA-AAAAG UUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 AG(U--ACAA )AUUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AGCUC| 9121 AU-CC-UCAU GCAUG(--CA -GA)AAUCAU GAAG-GGU|U CGAC(UGUUC )GUCGA-UUA 9181 A--AGAGCU- --ACAUGAGC UGGGUUUAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|A|<---- ---------- ---------- ---------- ---------- 9301 >ACAUA-AAG UA-GAU-UAA AGA-uaG-CC CCu-(UCGU- AC(-GAAA)G GAGUu)GGGU 9361 a--u--<--- ---------- ---------- -------->A UUGAUCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAG-GCAUGG CAGG--AAAG CUAC-AUCAG UUA------- ---------- -------AAG 9601 ---------- -AUAAGUGUU (GAAAGC--A U-CUA)A-AC -GC-GAAGCA AACUUUA--- 9661 -ugaU--A-- -CUUAUu<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -----ua|CG 9961 UAG(UAGAAC A--)CUACGa guauaauugu ua------ua uu-----uaa caauu-aaUA 10021 G|GCUUUagu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguaagA AUG------- ---------- --------(- ---------- 10141 ---------- -------aaa a)CAUUu--- ---------- ---------- ---------- 10201 ----uuagau a|u|AAAGUA CUAau-u--- ---------- ---------- ----uuaagu 10261 uuaguauacu aaauauuauu aaauaucauu auaauauuuu auauguuaca auaaa|?gcc 10321 uuuuuagcau aaaaguaaug caaccguuuu guaaucggua gaagugaguu cgauacucgc 10381 auaaggcuaa auauauuuuu uuauuuaaag acccaauggu caagacuggu uaagacauaa 10441 cauuuucacu guuagugcgg gaguucaaau cucccuuggg uuaaaaaaaa uauaauaaaa 10501 gagauuagcu caguugguag agcugucgcu uuacacgcga aaggucaggu guucaaauca 10561 ccuaucucuu aaagcgaauu aauguaauag uaacauauau ggcucauguc cauauuauuu 10621 aggugcaauu ccuaaguucg cuaccaaaga cuauagcuua auugguuaaa gcgaaccacu 10681 caugaugguu ugaguaaaug uucaagucau uuuagucuua uuuaauccga gugcuggaac 10741 ugguagacag ucuuaacuua agcuu~~~~~ ||||| // LOCUS mt.E.nidul 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Emericella nidulans. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Emericella nidulans. ORGANISM Mitochondria Emericella nidulans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01390,X06961 same as M24412 at the 5' end BASE COUNT 1178 a 363 c 544 g 1027 t 7663 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~gguga-u auauau---- --cauaua-- --ua-acuug a--------- 241 ----gaaa-- ---------- -ucaaggcua guauaUAAAG AAACUAUUA- ----UGGAUA 301 |AUU--AGC| UAU-AUAU-U A|aagaaau- ---------- ---aaauga| -cuag(-aua 361 a-au-----) c|uaggauu- cuaagaa-aa a-ucaaguaa ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----uAAAC |GAAGUGAAU 841 UGA(AAUA)U CUUAGUA--- -ACUUU---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AC)GA-G-AU |UAA-UAU-- -UUAG-U(-G -UAA)ACUAA -AUAUUAAA- 961 -AGCCUA<-a uaacaa(aac ---------- ---------- ---------- ---------- 1021 --------)u uguu------ ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--AAGUAAA AUGGAU(--- ---------- 1561 ---ucaa)AU CUGUUUGAAU ----aaAGGG G(AACCU-U) -CCUCUA--A GGCUA-AAUA 1621 ---UA-AUAU A-UAAGCGAU AGUG-AA--- --AAGUACC( -GUGA-)GGU ---AAA-AU- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --UUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAA U-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- --aaaauuua aauaaaaa-> (--------- 2041 --)------- AUAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUAGAUG CAA--guaaa gauaa--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccaa u)----uuaa --auua-uaa 2521 aaa-(-guua )--uga<--- ----uuaaaa agguuauuuu aacuuagaua aaccaauuau 2581 ga-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aaaa augag>---- ---------- ---------- ------uuaG UAUCU-AAAA 2701 UUA-GACCCG AA-GGCUA-G UG-AUCUUAC CAU-GGU-CA GGGU------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------a--- 2821 -GCCCGAA-C GG-GUUAUC( GUUGUAU-A) GAUA-UCCGA --AGAAUUG- UGGUAAGUUA 2881 GU(G-AAAG) ACA-AAAC-U G-ACUAGU-- AUAGCU-GGU UUUCC--GCG AA-ACC-UAU 2941 (-AUGA)GUA GG-UA-AUUU AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUGugau cu-cg----- ---------- ---------< gauaauauc- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- -------(aa uu)------- ---------- ---------- ---------- 3241 gau----uuu aucaacaucg ggggguug-u agugacuuua cugg>----- ---------a 3301 gag-uau-uU GCACUCGG-- AAUG|-GCAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--GU-U -GAAU-AAUC GGACA--UA- GU-GC(-GAU 3481 AAG)GUUGUA UG-UC----A AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UGUUGAGUG- --------AA AUUAAGGAU- GUUUAUUAUU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAAU-A GGC(UUAGAA 3781 GG-G)-GCCA -UUUU|U(U- GA)A|GACCU C(--GUAACA )GA|-GCAC- UGAUUAuAG-UA-A -UA-AAC|-A CCAAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAACAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|AC Acauau-uau aauaauuaua uaua(uuaau 4141 -----)uaau auauauugu- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --auaug-UG -G-----GGU AGCGG-AA|- CA-UUGGAUA A---AUA--- 4501 ---------- ---------- (-------)< uuauuuauua uuacuucuaa gauauaauaa 4561 guauaaauau uauuuuaaua auaauaauuu aucaa----- ---------- ---------- 4621 ---------- ------->-- ---------- -|-UAU---| AAUCCAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AGG------- (aauaa---- ---------- ---------- 4741 ---------- -----)---- --CCU-|CGC C-UUAA-GCU UAUAUGGUAU -|----ug-- 4801 ---------- <--------- --->(----u au)---|--- ---uaa---- ---------- 4861 ---auuuu-- -CGGUGUCUA AAA-A-U--- --auua-(au caaaagg--- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-uaau---- -----U-UUG AU-GAu--a- uuua(uauau guac------ ---------- 5041 ---------- ---------- ----)uaaau |-----|--- ---------- |---- -aaaaaa-ua aaacc----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- gguuCUGGAA ----AA-Uuu uuu--- ---------- ---------- -ACCGUA|CC 6481 ua-GAUACU- -(AUCACA)A G|UAAGC-AA GUA-(GAG-A A-----)-UA CAAAGGCGU| 6541 |--UUGAG-U G--AACAAUC -AUUA-AGGA ACUCGGCAAA UUGACUACCG UAAC(UUCG- 6601 )GGAUAA-GG AGG|------ ---------- ---------- ---------- ---------- 6781 ----|A(ACA )U--AAAAUA AUGUUGUA|C GA---CUG-U UU(AAUAA)A AA-CACA-GC 6841 ACUCUG|CA- -AAGAU---- ---------- (--uaaau-- ------)--- ---------- 6901 AUCAAAGUA- UUG-AGUGUG AUGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G UCGGCA-GGG UAACGA-Auc 7021 u-uccuug-g u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------au aua)ac--UA AGGUuuUGAA G-GACACC-| 7141 CC-GAUA-AA U-|GG-C|-G -GCCUU-(AU CUAUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUA-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUGACAUA A-CGAUACAA 7261 CA-------- ---------- -------GCU GUCUCGAUGA UUGU-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGU UUA----CCU CUAGAUAAAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACC AGU--UGCA| aagu-- ua-----aau uuuaggaUG- UuuucgAGAG 7501 UAUAAGGUA- -GUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---gaaa -)-------- -------GAU 7681 AACAAUGAAA CACCuuu|au ucguuuccu- u---a-uaua ugcu-u---- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->--uu gaAGA-U-UG -GAA-GG-CA GUUUAUGCG( 8161 GGG)CA-CA- G|AUCCCA(- --------CA AAAAGUACA- )UGGGUAU|A |U|CCAA-|< 8221 -aguucauau uguaaauuug uaa-uuuuau uacaaauauu uuaauuuguu auauuuauuu 8281 uuauaaauau acaguua-uu guuaaauuaa guucaauauu uauuuuuauc u--------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AG-UAA 8401 -GA|--UU-- uuaa-- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GU (U|UAAUG)G CUA-AAU-CU 8761 U-GC-UUUAU CGUUU-GAC( -cuacaa--- )GUUCA-UCA G--------- ---------- 8821 ---------- --------UU GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A UGAUC-ACAA GA-U------ ---------- GCA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAAGG AA)AG|GUCU 9001 UGG-AUUAU- |AGA-aAAAG UUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 AG(U--ACAA )AUUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AGCUC| 9121 AU-CC-ACAU GAAUG(--CA -AA)AAUCAU GAAG-GGU|U CGAC(UGUUC )GUCGA-UUA 9181 A--AGAGCU- --ACAUGAGC UGGGUUUAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAUUA-AAG UA-GAA-UAA AGA-uaG-CC CCu-(UCGU- AC(-GAAA)G GAGUu)GGGU 9361 a--u--<--- ---------- ---------- -------->A UUGACCU-AU GGUUUACCUA 9421 U|-UGU-UUA ------- 9541 UAG-GCAUGG UAGG--AAGG CUAC-GUCAG UUA------- ---------- -------AAG 9601 ---------- -AUAAGUGCU (GAAAGC--A U-UUA)A-GC -GC-GAAGCU UACUUUA--- 9661 -ggaU--A-- -CUUUAa<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -----aa|CG 9961 UAG(UAGAAC A--)CUACGa guaucauuaa aaaaauauua uuuuuuuuuu uaauguaaUA 10021 G|gcuu-agu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguacuA AUC------- ---------- --------(- ---------- 10141 ---------- -------uua a)GAUUu--- ---------- ---------- ---------- 10201 ----uuagac a|u|aaaugA CUAau-u--- ---------- ---------- ----uauaaa 10261 aaacuaaau- ---------- ---------- ---------- ---aua---- -auauauauc 10321 gaaaa---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.chrys 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Penicillium chrysogenum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Penicillium chrysogenum. ORGANISM Mitochondria Penicillium chrysogenum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: S56867,D13859 LOCUS S56867 5360 bp DNA PLN 25-JUN-1993 DEFINITION 1-rRNA...tRNA-Thr {group IA intron} [Penicillium chrysogenum, NRRL1951, Mitochondrial, 3 genes, 5360 nt] ACCESSION S56867 D13859 KEYWORDS . SOURCE Penicillium chrysogenum NRRL1951 ORGANISM Mitochondrion Penicillium chrysogenum Unclassified. REFERENCE 1 (bases 1 to 5360) AUTHORS Naruse,A., Yamamoto,H. and Sekiguchi,J. TITLE Nucleotide sequence of the large mitochondrial rRNA gene of Penicillium chrysogenum. JOURNAL Biochim. Biophys. Acta 1172, 353-356 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 127438] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA join(143..2977,4656..5236) /note="Description: 1-rRNA" tRNA 5239..5309 /note="Description: tRNA-Thr" CDS 3315..4514 /note="Description: ribosomal protein S5 homolog; For the protein sequence (NCBI gibbsq 127439): Method: conceptual translation supplied by author. This sequence comes from Fig. 1." /codon_start=1 /translation="MLNIIKSKLNTTYKKKGLNDSSIAIYNRDIIPAVRNWKSSIYAY NKNAINLIPIKSKYVMKLIKAYFNLYNLQLESLLRKNRLRRRFRKISTNRIFISDGEF KHTNDKVNITLYVYNKQKLNYLLKLKKRYLTLFKKAKFARKLKLIKNIGLNILCKHKQ KSILLSNLLPKYNTQVNTAQNIYYLRFIKKSFKRLKFYMYYKQMLYINKAKFENTYLQ GLISLVKNIFNKNVEFNIINLKYFYFNSNIFTQPLELKLKKKRNVLRYLKVLIRKAKI KNVKLAEKSKKFFNLNIFNSDNFLQQDNTKSKYLKKIILSDLKYKRVSGVRLEAAGRL TRRFSASRSQRRTKYKGNLENVYSSFKGYPTPMLRGNDKANLQYTVINSTSRVGAFGV KGWVSST" BASE COUNT 2136 a 582 c 799 g 1843 t ORIGIN BASE COUNT 1354 a 424 c 603 g 1177 t 7217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ caaauuaaau 61 uaauguaaau acauuauagg uuuuacaggu uaguguccgg ugguuggucg cuucauuugg 121 guuggagauu guuuauguuc gaaucauaau aaccugauaa uuaauauagg uauaauuaua 181 uauaccaaua ua>gauga-u auguau---- --cauaua-- --ca-ucuug a--------- 241 ----gaaa-- ---------- -ucaagacaa guauaUAAAG AAACUAUUA- ----UGGAUG 301 |GUU--AGC| UAU-AUAU-U U|caagaua- ---------- ----uugau| -cuag(aaaa 361 auauaaa--) c|uagaaau- cauagag-aa a-ucuaauua ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ----uaAGAC |AAAGUGAAU 841 UGA(AAUA)U CUUAGUA--- -ACUUU---- ---------- ---------- ---AGUAAAA 901 GAAAUC(-AA AC)GA-G-AU |UGU-UAU-- -UUGG-U(-G -UCU)UCUGA -AUAGCAAA- 961 -AGCCUU------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--AAGUAUA ACGGAA(--- ---------- 1561 ---aaaa)AU CUGUUGAAAA ----auAGGG G(AACCU-U) -CCUCUA--A GGCUA-AAAA 1621 ---AA-AUAU A-UAAGCGAU AGAG-UA--- -ACAGUACC( -GAGA-)GGG ---AAAUAC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -cCUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG Uua-----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---aaauuua aauaaa---> (--------- 2041 --)-----ua AUAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUAGAUG CAA--guaa- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---caucucu uuuauaagca u)-------- ---uua-c-- 2521 ----(----- )-----uuau g-(aaaa--) -a-auga--- -----auuaG UAUCU-AGAA 2701 UUA-GACCCG AA-GGCUA-G UG-AUCUUAC CAU-GGU-CA GGGU------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------a--- 2821 -GCCCGAA-C GG-GUUAUC( GUUGUAA-A) GAUA-UCCGA --UGAACUG- UGGUAAGUUA 2881 GU(G-AAAG) ACA-AAAC-U G-ACUAGU-- AUAGCU-GGU UUUCC--GCG AA-ACC-UAU 2941 (-GUAA)GUA GG-UA-AUUU AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUGugau cu-cg----- ---------- ---------< gacaa-uau- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- --------uu aau------- ---------- ---------- ---------- 3241 aua----uuu gucaacaucg ggggguug-u agugacuuua ccgg>----- ---------a 3301 gag-uau-uU GCACUCGG-- AAGG|-GCAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--GU-U -AAAU-AAUC GGACA--UA- GU-GC(-GAU 3481 AAG)GUUGUA UG-UC----U AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UGUUAAGUG- --------AA AUUAAGGAU- GUUUUUUUUU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAACA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAAU-A GGC(UUAGAA 3781 GC-G)-GCCA -UUUU|U(U- GA)A|GACCU C(--GUAACA )GA|-GCAC- UGAUUAuAG-GA-A -AA-AAC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|AC Acaaa--uaa aa---auuaa a-gc(guuau 4141 a----)gcuu ---------a aua------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --uuuug-UG -G-----GGU AGCGG-AA|- CA-UUGGAUU A---AAC--- 4501 ---------- ---------- (-------)< --aaaauauu aauauuuuuc uuaaaauauu 4561 aaagaucuag caucu----- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-GUU--a| AAUCCAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AGG-CU---- (uuu------ ---------- ---------- 4741 ---------- -----)---- AGCCU-|CGC C-UGAA-GCU UAU--GGUU- -|-------- 4801 ---------- (----- --)---|--- ---------- ---------- 4861 ---------- -CGGUGUCUA AAA-A-A--- --auua-(au caaaaga--- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-uaau---- -----U-UUG AU-GAc--g- uuuu(guau( aagaua)aua cc-------- 5041 ---------- ---------- ----)aaaac |-----|--- ---------- |---- -uauua--ua auaua----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uauacuggaa ----aa--ua aua<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- -aaua----- ---------- -ACCGUA|CC 6481 ua-GAAACU- -(AACUCA)A G|UAAGC-AA GUA-(GAG-A A-----)-UA CAAAGGCGU| 6541 |--UUGAG-A G--AACAAUC -AUUA-AGGA ACUCGGCAAA UUGACU-CUG UACC(UUUG- 6601 )GAAUAA-GG AGG|------ ---------- ---------- ---------- ---------- 6781 ----|A(UCA )U--GAAAUA AUGUUGUA|C GA---CUG-U UU(AAUAA)A AA-CACA-GC 6841 ACUCUG|CA- -AAGAU---- ---------- (--aaaaa-- ------)--- ---------- 6901 AUCAAAGUA- UUG-AGUGUG AUGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G UCGGCU-GGG UAACGG-Auc 7021 u-ACCUUg-a u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua uua)ac--UG AGGUuuUGAA G-GACACC-| 7141 CC-GAUU-AA U-|GG-C|-G -GCCUU-(AC CUAUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUA-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUGAUUUA A-CGAUGCAA 7261 CA-------- ---------- -------GCU GUCUCGAUGA UUGU-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGU UUA----CCU CUAGAUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUA| gagu-- ga-----aau uuuaggaUG- auuuauAGUG 7501 UAUAAGGUA- -GUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---guug a)-------- -------GAU 7681 AAUAAUGAAA CACCuuu|au ucgaauccu- u---a-uaua uacu-c---- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->--uu aaUGA-U-UA -GAA-GG-CA GUUUAUGCG( 8161 GGG)CA-CA- G|AUCCCA(- --------CA AAAAGUACC- )UGGGUAU|A |U|CCAA-|< 8221 -aguucauau uguaaacuug uauauuuaua uacaaauauu uuaauuuguu cuaauuauua 8281 uuauaauuau acaguuauua uucgauuaaa uuccacaauu auuuuuuauu uu-------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AG-UAA 8401 -GA|--UU-- uuaa-- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GU (U|UAAUG)G CUA-AAU-CU 8761 U-GC-UUUAC UGUUU-GAC( -cuacaa--- )GUCUA-UCA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A UGAUC-ACAA GA-U------ ---------- GCA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAAGG AA)AG|GUCU 9001 UGG-AUUAU- |AGA-AAAAG UUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 AG(U--ACAA )AUUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AGCUC| 9121 AU-CC-UCAU GCAUG(--CA -GA)AAUCAU GAAG-GGU|U CGAC(UGUUC )GUCGA-UUA 9181 A--AGAGCU- --ACAUGAGC UGGGUUUAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|A|<---- ---------- ---------- ---------- ---------- 9301 >ACAUA-AAG UA-GAU-UAA AGA-UAG-CC CCu-(UCGU- AC(-GAAA)G GAGUu)GGGU 9361 a--u--<--- ---------- ---------- -------->A UUGAUCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAG-GCAUGG CAGG--AAAG CUAC-AUCAG UUA------- ---------- -------AAG 9601 ---------- -AUAAGUGUU (GAAAGC--A U-CUA)A-AC -GC-GAAGCA AACUUUA--- 9661 -UGAU--A-- -CUUUUa<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -----ua|CG 9961 UAG(UAGAAC A--)CUACGa gcauaauugu -------uua auu------a caauu-aaUA 10021 G|GCUUUagu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguaagA AUG------- ---------- --------(- ---------- 10141 ---------- -------aua a)CAUUu--- ---------- ---------- ---------- 10201 ----uuagau a|u|AAAGUA CUAau-u--- ---------- ---------- ----uaaaaa 10261 aaaaaguaua cuaaauauua uuuaauauca uuauaauauu uuuu------ -uuauauauu 10321 acaaua--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.crass 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Neurospora crassa. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Neurospora crassa. ORGANISM Mitochondria Neurospora crassa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X55443 Neurospora crassa mitochondrial LSU rRNA >From Helmut Bertrand Nucleic Acids Research "For the Record", in press; X55443 BASE COUNT 1216 a 499 c 684 g 1066 t 7310 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~aaa-u guaauggaua uaaagcuuau guuuauauau ---------- 241 ---auagac- ---------- --auauauaa guauaUAAAG AGACUACUA- ----CCAAUA 301 |GCU-acAC| UAU-GUAU-U A|aggaga-- ---------- -------gu| -auaa(-cuu 361 aau------) u|uauguuu- augauuu|ua u-cauacccc uaaaaaugac accgaggagc 421 a--------- ---------a gggucgg-gu uagcauc-cu gguucguaca c(cuug)gug 481 accuaggcua guaccag-gu cccccucuaa ggga(cuug) ucccccucua agggac-uug 541 cgucgguccu a(ucc)uagg ccg- --uaauAAAC |GAAGUGAAU 841 UGA(AAUA)U CUUAUUA--- -ACUUC---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AC)GA-G-AU |UCU-AUGA- -UUAG-U(-G -UGA)ACGAA -AAUAGAGC- 961 -AGCCUA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- --<-uuaaaa 1381 u--------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---AAGUAAA AUGGCU(--- ---------- 1561 ---uuaa)AG CUGUUUGAAU --auugUGGG G(AACCU-U) -CCUCAA--A GGCUA-AAUA 1621 ---UA-AUAC A-UGAGUUAC AGAG-AA--- --AAGUACC( -GUGA-)GGG ---AAA-GC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -uUUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (aauaagaaa 2041 --)------- GCGAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-ACCAA GU-----UA- 2101 AUUUUAGAUG CGA--gcgaa u-uuauu(ua u--------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------g 2341 uuuuuacuga uuaaacaaua uaaugaauca uaauuauuuu uguaacgagu auuaguauua 2401 aaucuuaauu uaauauuagu auaaguuuuc aguauggagg auacauagca uaaucuaugc 2461 agccagccaa uaauuggauu uccaauccaa uuucgguaau a)--aauaga --ugug-cau 2521 agu-(-uaaa )--ccgucau ua(-aaa--) ua-auga--- ------auaG UGUCU-AAAG 2701 UUA-GACCCG AA-GCCUG-G UG-AUCUUAC UAU-AGU-CA GGAC------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------g--- 2821 -GUCCGAA-C GG-GUUAUC( GUUGCAA-A) GAUA-UCCGA --AGAACUA- UGGUAAGCGA 2881 GU(G-AAAG) ACA-ACAC-U G-ACUAGG-- AUAGCU-GGU UUUCU--GCG AA-ACC-UAU 2941 (-AAUA)GUA GG-CA-AUUU AAGU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 U|AGGUAC|A GAACUua-AU CU-ca----- ---------- ---------< gacaa-gaug 3121 uaga-----u uuucauaccu a--------- ---------- ---------- ---------- 3181 ---------- -------(ug uu)------- ---------- ------uagg uaugaaaugc 3241 auuuuuuuuu guauacaucg ggggaucg-u gaagauuuua ucgg>----- ---------u 3301 gAG-uAu-gu AGACUCGG-- AAUG|-ACAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--CU-U -GAAU-AAUC AGACA--UA- GA-AU(-GAU 3481 AAG)GUUGUA UG-UC----A AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UAUUAAGUG- --------AA AUAAAGAAA- GUUUUUAUAU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGUCG-ACAA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAGAU-G GGC(UUGGAA 3781 GC-A)-GCCA -UAAU|U(U- AA)A|GAUCU C(--GUAACA )GA|-GCAC- UUGUUAAUC-UU-A -AA-AGC|-A UCGAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|CC Au-------- auguaacauu agua(auaau 4141 augc)uauua auguuauuug ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ------a-UG -G-----GGU AGCAG-AA|- CG-UUGAGUG A---AUCuua 4501 g--------A UuUUU-uuUU (uau----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA cuA--AAu-A U|AGAUGAU| AACUCAAGUG AGAAUGG-UG 4681 AC|AUGAGUA -ACAA-AAA- AGAGUU-UA- (agguaccu- ---------- --(aaa)--- 4741 ------aggu aucuu)-A-G AGUCU-|CGC C-UAAA-GCU UAU--GGCU- -|----ac-- 4801 ---------- ---------- ----(--guc aa)---|--- ---gua---- ---------- 4861 ---a------ -CGGCCUCUA A-GUU-U--- AUAAUC-(ug aa-------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-GAUU---A U----G-ACG AU-GAGAAa- auaa(cgcgc (agaa)gugc g--------- 5041 ---------- ---------- ----)cugcu |-----|uug a--uacuu-- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ -------aa- ugacaa---- -ACCGUA|CC 6481 UA-GAAUCU- -(GAAACA)A G|UAAGC-UA GUA-(GAG-A A-----)-UA CGAAGGCGU| 6541 |gaAUGAG-A U--AACAAUC -AUAA-AGGA ACUCGGCAAA CUAACUACCG UAAC(UUAG- 6601 )GGAUAA-GG AGA|gcucau uagucucg-- -----(auua aua)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->----cg aguaaaaagg 6781 aaga|A(GCA )U--GGAAUA UUGUUGUA|C GA---CUG-U UU(AAUUA)A AA-CAAA-GC 6841 ACUUUG|CAa aAAGAC---- ---------- (--gauaa-- ------)--- ---------- 6901 GUCUAAGUA- UUG-AGUGUG AUUUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCGGCU-GGU UAACGA-Auu 7021 u-ucuaaa-u u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------gaaa aaa)aa--uu ugguuucaGA G-GAACCC-| 7141 CC-GGUU-AA U-|GG-C|-G -GCCUU-(AG C-GUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUG-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|UU-GCAU GAAUGAUGUA A-CGAUACAA 7261 CA-------- ---------- -------GCU GUCUCUAUGA UUGA-CU-CA ----GUGAAA 7321 UU|G|GAAUA AC-UG(U-GC AGAUA)CAGU UUA----CCU CUAGUUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUU| aauac- ga-----uuc -ugaaaauu- ucc---AGUG 7501 UAAAAGGUA- -AUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---gaua a)-------- -------GAU 7681 AUAAUUGAAA CACCUUU|a- ----uuuuu- c-u----auc guau-uauua aacc-uu--- 7741 a----(---a au--)----u ---------- ---------- ---------- ---aagg-<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-AAC AAUUG-U-UA -GAA-GA-CA GUUUAUGCG( 8161 GGG)CA-CA- G|GCCCCA(- --------UA AAGAGUAAA- )UGGGUGU|G |U|CUAA-|< 8221 aauuuauaaa uuuauguuug caauuuuuua uagugauuau auaucaaauc aucuuuaugc 8281 uauucauaga guguauuuau uauauuccuu ggguacagua uaaaaauuau auauguauua 8341 auuuacauau auuuuuucua agaaauu--- ---------- ---------- ->A-GG-UAA 8401 -GA|--UUu- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GC (U|UAAUG)G CUU-AAU-CU 8761 U-GC-CUUAC UGUUU-GAU( -uaacaacaa )AUCUU-ACA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG--G 8881 G|---CAU-A GGAUC-ACAA GA-U------ ---------- ACA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AAAAGG AA)AG|AUCU 9001 UGGauuuuu- |gg--aAAAG CUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 UG(U--ACAA )AAUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|GACUA| 9121 AU-CC-UCAU GGAUG(--CA -GA)AACUAU GUAG-GGU|A CGAC(UGUUC )GUCGA-UUA 9181 A--AAAGUU- --ACAUGAGC UGGGUUAAAU AG|CU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAUUA-GAA UA-UAA-UAA GGA-uua-ac cu--(UUGU- AC(-GAAA)G GAACa)uggg 9361 g--ua-A UUAACCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAA-GCAUGG CACC--AAAG CUAA-GUUAG UCA------- ---------- -------AAA 9601 ---------- -AUAAGUGCU (GAAAGC--A U-AUA)G-GC -AC-GAAAUU UACCUUA--- 9661 -AGAU--A-- UUUCUU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- aaauaua|CG 9961 UAA(GAAAAU A--)UUACGU U--------- ---------- ---------- ------aaUA 10021 G|GCuuaguu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguaaua auc------- ---------- --------(- ---------- 10141 ---------- -------uag a)gauuu--- ---------- ---------- ---------- 10201 ----uaagga a|c|uaaGUA CUAau-u--- ---------- ---------- ----u-uaua 10261 -aaaaacuga au-------- ---------- ---------g auuaauauau c--uuacauu 10321 uuc-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.anser 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Podspora anserina. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Podspora anserina. ORGANISM Mitochondria Podspora anserina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X14735,X55026 LOCUS X14735 9377 bp UNA 15-MAR-1990 DEFINITION Podospora anserina mtDNA for large subunit rRNA. ACCESSION X14735 REFERENCE 1 (bases 1 to 9377) AUTHORS Cummings,D.J., Domenico,J.M. and Nelson,J. TITLE DNA sequence and secondary structures of the large subunit rRNA coding regions and its two class I itrons of mitochondrial DNA from Podospora anserina JOURNAL J. Mol. Evol. 28, 242-255 (1989) STANDARD unannotated staff_entry BASE COUNT 3391 a 1300 c 1707 g 2979 t ORIGIN BASE COUNT 1450 a 613 c 817 g 1266 t 6629 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~uua-u aaaa------ -auauaaaug aauug-uaua uaucuu---- 241 -uuauauuau aucu---aag -auaua-caa guauaUAAAG AGACUAUUA- ----UGGAAA 301 |UAC-guGC| UAU-GUAU-U A|aagaga-- ---------g aaauuuaac| -uuau(guac 361 auga-----) a|uaaaaca- u---aug--- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----aa-cu c--------- -----(-uua 481 )gag|----- ---------- ---------- --aaa----- ---------- -(--uu-a)- 541 ---------- -----uuuaa u--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ------AAAC |GAAGUGAAU 841 UGA(AAUA)U CUUAUUA--- -ACUUC---- ---------- ---------- ---AGGAAAA 901 AAAAUC(-AA AC)GA-G-AU |UCU-AUGA- -UUAG-U(-G -UGA)ACUAA -AAUAGAGU- 961 -AGCCUA------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- --<-ua---- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >---AGUAAA AUGGCC(--- ---------- 1561 ---uaaa)AG CUGUUUGAAU ---uuaUGGG G(AACCU-U) -CCUCAA--A GCCUA-AAUA 1621 ---UA-AUAC A-UGAGCGAC AGUG-AA--- --AAGUACC( -GUGA-)GGG ---AAAauu- 1681 uu-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -uUUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG Cugau---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----aaua 2041 --)---aaaa GCAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-ACCAA GU-----UA- 2101 ACAUUAGAUG CGA--gcuaa u-uaucu(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --ugauuuga u)--agauga --caug-cau 2521 agu-(-uaaa )--ccgucau ua(-aaa--) ua-auga--- ------auaG UGUCU-AAAG 2701 UUA-GACCCG AA-GCCUA-G UG-AUCUUAC UAU-AGU-CA GGGC------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------g--- 2821 -GUCCGAA-C GG-GUUAUC( GUUGCAA-A) GAUA-UCCGA --AGAACUA- UGGUAAGCGA 2881 GU(G-AAAG) ACA-ACAC-U G-ACUAGG-- AUAGCU-GGU UUUCU--GCG AA-ACC-UAU 2941 (-AAAA)GUA GG-CA-GUUU AAGU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUuu-AU CU-ca----- ---------- ---------< gacaa-gaug 3121 uaua-----u ucucauaugg auaagua--- ---------- ---------- ---------- 3181 ----aggcgc ggcgcggc(g aaa)gcucuu ccucgcuauu uaucuauuua uaugaaauac 3241 auu-uuauuu guauacaucg ggggaucg-u gaagauuuua ucgg>----- ---------u 3301 gAG-uAu-gu AGACUCGG-- AAUG|-ACAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -guu--CU-U -GAAU-UAUC GGACA--UA- GA-AU(-GCU 3481 AAG)GUUGUA UG-UC----A AAAGGG(AAA -CAG)CCC-A GAACA-A--A -GAaauaguu 3541 aaGGU-UCCA -AAAUUA-U- UAUUAAGUG- --------AA AUUAAGAGG- GUUUUUAUAU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGUCG-ACAA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAGAU-A GGC(CUGGAA 3781 GC-A)-GCCA -UAUU|U(U- AA)A|GACCU C(--GUAACA )GA|-GCAC- UUGUUAAUC-UU-A -AA-AGC|-A UCGAAAAU-- ---------- ---------- ----UUAUCG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACU| U--U-GU|CC Acaa------ ---augacca uaau(aaauu 4141 a--a)guuau ggucauuu-- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ----uug-UG -G-----GGU AGCAG-AA|- CG-UUGAGUU A---AUAuuu 4501 g--------A CUUUU-CUUU (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA AGA--AAA-A U|AUAGGAC| AACUCAAGUG AUAAUGG-UG 4681 AC|AUGAGUA -ACAA-AAA- AGAAGG-GC- (uauguaaau uauaauauaa ua(uaa)uau 4741 uauauuauau guuaa)-G-C UCUCU-|CGC C-UAAA-GCU UAU--GGAA- -|----ag-- 4801 ---------- ---------- ----(--agu u-)---|--- ---uua---- ---------- 4861 -aaaaaguaa -CGGCCUCUA A-GUU-G--- AUAAUA-(cu ua-------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-UAUU---A U----U-GCG AU-GAGAAa- aucu(aauua cuuu------ ---------- 5041 ---------- ---------- ----)agaca |---ac|auu uaaccuu--- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ --------aa ggaagu---- -ACCGUA|CC 6481 UA-GAAACU- -(GAAACA)A G|UAAGC-UA GUA-(GAG-A A-----)-UA CGAAGGCGU| 6541 |-aAUGAG-G U--AACAAUC -AUAA-AGGA ACUCGGCAAA CUUACUACCG UAAC(UUAG- 6601 )GGAUAA-GG AGG|gcucau uagucucg-- -----(auua aua)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->----cg aguaaaaagg 6781 aaga|A(GCA )U--GAAAUA UUGUUGUA|C GA---CUG-U UU(AAUUA)A AA-CAAA-GC 6841 ACUUUG|CAu aAAGAU---- ---------- (--GAAA--- ------)--- ---------- 6901 AUCUAGGUA- UUG-AGUGUG AUCUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCGGCU-GGU UAACGA-Auu 7021 a-acuaua-u u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------gau aaa)ag--ua uggucuuaGA G-GAACCC-| 7141 CC-GGUU-AA U-|GG-C|-G -GCCUU-(AG C-GUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 ACG-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|UU-GCAU GAAUGAUGUA A-CGAUACAA 7261 CA-------- ---------- -------GCU GUCUCUAUGA UUGA-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGC UUA----CCU CUAGUUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUU| aauau- ga-----ucc -cggcuauu- cug---AGUG 7501 UAUAAGGUA- -AUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---gaua a)-------- -------AAU 7681 AUAAUUGAAA CACCUUu|a- ----uuauu- c-c----auc auau-uauaa u--------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------GAAC AAUUG-U-UA -GGA-GA-CA GUUUAUGCG( 8161 GGG)CA-CA- G|ACCCCA(- --------UA AAGAGUAAA- )UGGGUGU|G |U|CUAA-|< 8221 -uaauaaaaa aauuuauguu ugcaauuuuu uauaguaauc cuauauuuaa ucauguaugu 8281 ucuauucaua gaauauaaua ugaaugaauu cgauucauuu auaauauagu ccuuggguac 8341 aguauaaaaa uuauauaugu auuuuugcaa uauaauuucc augaaauuag g>A-GG-UAA 8401 -GA|--UU-- uu---- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GC (U|UAAUG)G CUU-AAU-CU 8761 U-GC-CUUAC UGUUU-GAU( -uaacaacaa )AUCUU-ACA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A GGAUC-ACAA GA-U------ ---------- ACA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AAAAGG AG)AG|AUCU 9001 UGGauuauu- |gg--aAAAG CUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 UG(U--ACAU )AAUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AACUU| 9121 AU-CC-UCAC GGAUG(--CA -GA)AACUAU GUAG-GGU|A CGAC(UGUUC )GUCGA-UUA 9181 A--AAAGUU- --ACAUGAGC UGGGUUAAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAUUA-GAA UA-UAA-CAA GGA-uua-au cu--(-UGU- AC(-GAAA)G GAACa)uggg 9361 g--ua-A UUAACCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAA-GCAUGG CAGG--AAAG CUAA-GUUAG UCA------- ---------- -------AAG 9601 ---------- -AUAAGUGCU (GAAAGC--A U-AUA)G-GC -AC-GAAGCU UGUCUUG--- 9661 -GGAU--A-- UUUCUU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- aaauaua|CG 9961 UAA(UAUAAU A--)UUACGU C--------- ---------- ---------- ------auUA 10021 G|GCuuaauu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---ugcaaga auc------- ---------- --------(- ---------- 10141 ---------- -------uag a)gauuu--- ---------- ---------- ---------- 10201 ----uaaggu a|u|uaaGUA CUAau-u--- ---------- ---------- ----u-uaua 10261 gu-------- ---------- ---------- ---------- ---aaa---- ---cuauaua 10321 auug----|- -------aua uauuuuauuu aaagccgagu uagcauaaaa ggaaugcaau 10381 uguuuuguaa ucaauagaag uaagugcgau acuugcaccc ggcuaggagu uauaaggauu 10441 aguagucaag ugguacgaca uagcucuuuc aaugcuacca ucgcagguuc gauuccugcc 10501 uagucuauua gguaggcgca agccacauac auaauggcga aguauaucga ggagcuugcg 10561 cuauauauac agcagacgaa uuauaaauau cccuacguca ggcgcagagg uuuacauacg 10621 acgaguuaua uauauaaccc uacguaugua ugcccagcac cgucauucuu uuuauugagg 10681 cuauagcuca auugguagag cguacugcuc auaacaguaa uuauaagugu ucaagucacu 10741 uuagccuuau ggcuguauau ucugcugcag ||||| // LOCUS mt.P.canad 10775 bp RNA RNA 09-JAN-1995 DEFINITION Mitochondria Pichia canadensis. str. was Hansenula wingei. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Pichia canadensis. str. was Hansenula wingei. ORGANISM Mitochondria Pichia canadensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D31785 BASE COUNT 1383 a 246 c 374 g 1082 t 7690 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~auaaa aaauauaaga 181 auauaaauau aaaaauaa-a auguauagau u--------- ---------- ---ugaaaag 241 uguuauacgg cau------- ---------- -----UAAAG GGUUAUUCA- ----AGGAAU 301 |AUA-uuAC| UAU-UAAU-A A|ggaa---- ---------- -----aggu| ---------- 361 ---------- -|-------- ---------- ----uacuaa uaauuaaaua auauuuaauu 421 uaaa------ ---------- ---------- accuaa---g g--------- -----(uaaa 481 )cc-|----- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- --auag-->- --aaaaAAAC |GUGAAGAAC 841 UGA(AUCA)U CUAAGUA--- -UUCAU---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AA)GA-G-AU |AUU-AUGA- -GUAA-U(uG GCGA)AUGAA -AAUAAUAA- 961 -AGUUAA------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---AAGUAAU CCCU--(--- ---------- 1561 ---uuag)-- GGGGAUGAAU ----aaAGAU U(AAACU-A) -AAUCUA--A AACUA-AAUA 1621 ---UU-AUUA A-UAAGUAUA aa-------- --AAGUACC( -GAAA-)GGG ---AAA-AU- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --AUAGAAAU GGAU-AAU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGUAUgag acuuu---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (------aaa 2041 --)---aaag uuuaAUAC-G UACCUU(UU- GUAUA)AUGG |GCC-AGCAA GU-----AA- 2101 UAAUAAUUAG CAA--aauau u------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --------aa a)-------- a-auau-uaa 2521 aua-(-uaaa )--uagaa gau|uauuau 3061 a|UGGUAU|A GCAAuua-au au-uu----- ---------- ------aa-< auuua-uuau 3121 uauu-----u au-------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ------aaua auaaau---- 3241 ---------- -------aug gggguc-aau uauagacuua ucau>----- ---------g 3301 uau--au-uu aauCUCAU-- AAUA|auaua -a-u---auc auuauuaauu aauaaaauaa 3361 uuaaua---- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aaaaaAU-U -AACU-AAUC AGACU--GU- AU-GC(-GAU 3481 AAG)GUAUAU AG-UC----G AGAGGG(AAA -CAG)CCC-U AAAUA-a-AA -UA-UAA--- 3541 --GGU-UCUA -AAAUAU-A- AAUUAAGUG- --------aa uaaaaugua- uaauaaauuc 3601 -au------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAUCA-AUUA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uuGGU-G GGU(UUGACA 3781 AU-A)-ACUA -UCCU|A(U- AA)U|GAACA U(--GUAACA )AU|-GCAC- UAAUaaaga-aa-u -uu-uau|-a cagauaa--- ---------- ---------- ----UACACG 3961 GAUCU----- ---------- ---------- ---------- uaaaaauaua uuuuuuuaau 4021 uaaagauaua uuauaAAUUU AUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--GAU| U--U-AU|AU Auuuauauau ---------- ----a-uaaa 4141 aaca-a---- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 --------au auauaaa-UA -U-----AGU AACAG-AG|- CA-UAUAAUA A---auaaaa 4501 uauaaua--- -guua-gaua (-------)< aauuauuaua aaaauuaaau aaaaauaa-- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ua uuu--aau-a a|auau--u| aAUUAUAUUG AGAAUGC-UG 4681 GC|AUGAGUA -GCGA-AAA- AUA-AG-Ua- (auaaaaauu auaa------ ---------- 4741 ---------- -----)---A CUUAUu|CAC A-uaau-ACA UAA--gguu- -|----uua- 4801 ---------- ---------- ----(---cu a-)---|--- --uaaa---- ---------- 4861 ---uu----- -CGGUCCUUA A-AUU-A--- guauau-(aa auaua----- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >auaua---- -----u-auG AU-AGGuu-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|AU 6481 U--AAUACC- -(GACCCA)G G|UGUGUAUA GUA-(GAG-A A-----)-UA UGAAaGUGA| 6541 |--AUGGA-A A--AAAUAUG -GUUA-AGGA ACUCGGCAAA AACAAC-CCC CACG(UUAGU 6601 )CAAAAAAGG GUA|------ ---------- -----(---- ---)------ ---------- 6781 ----|-(--- )---agaaUA AGAUUAUA|C AA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 ACUUUG|CA- -GAUAU---- ---------- (--aaaa--- ------)--- ---------- 6901 AUAUUAGUA- UAA-GGUGUG AAUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AUUUA--aua acuaaa-aa- 7021 --uuauuu-u u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------aua aaa)gg--aa auaa--uu-c u-aaagau-| 7141 UA-GUCA-AA U-|AG-C|-A -GCCUU-(AU -UUUG)AGGG UU|A(UAA)- UG-UAGCGAA 7201 AUU-CA-U-U |GGCUAC(-U AAUU-)AUAG UC|CU-GCAU GAAUGGAGUA A-UGAUAUAA 7261 UA-------- ---------- -------ACU GUCUCAACCA UAUA-UC-CA ----GCGAAA 7321 UU|G|GAUUA GC-AG(U-GA AGAUA)CUGC UAA----ACU UCAGUAAGAC GGAAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU AU|--u-aau aaacaaacu| <--------- ---------- 7441 ---------- ---------- --->guuuu- au-----auu -uauauuua- uuc---AGCU 7501 UAUAAAGUA- -AUA------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(--aauag u)-------- -------UAU 7681 AAAAUUGAGA AACUUUu|u- ----aaaua- u-a-a-auau aaaa-cuua- -ucuua---- 7741 -----(---- ----)----- ---------- ---------- ---------- ---------gaa aguuu-u-ua -uua-GA-UA GUUUUGAUG( 8161 GGG)CG-UC- A|UUCUCA(- --------UA UAAAUAAAC- )UGAGUAA|G |U|CCUU-|< 8221 uauaugauua auaaauaauu aaaaaaaaau auaaaauaua uauuaaauau auuaauuaua 8281 uauauacaau uuaaauuauu uauauuauuu uauauaaaua aucuaaaauu gaauaaauaa 8341 uagaaaagag a--------- ---------- ---------- ---------- ->a-gg-uau 8401 -ag|--uaa- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aaa|AU (A|UAAUA)G UAU-AAc-ua 8761 u-gcauaAAU UACgauCAU( -aaacaa--- )AUGAA-GUA A--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-UG 8881 G|---UAUAA UGAAC-AUUU AC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AAUAGU AU)ua|GGUA 9001 AAG-AUAAC- |GGAUAAAAG UUACGC|UAG G|GAUAACAG |G-GUA-A-U AUAACGAAAU 9061 AG(U--ACAU )AUAGUAAGU --UAUGUUUG CC-ACCUCGA UGUC|GA--C U|C|GCCUU| 9121 AU-CC-UAUU GG-UU(--GU AGC)AGCUAA UAAG-GGU|U UGAC(UGUUC )GUCAA-UUA 9181 A--AAAGGC- --ACGUGAGU UGGGUUAAAU AC|UU-C(GU GA)G-CAGUA UGGUUCCUAU 9241 CU|UCUGA-A GU|A|<---- ---------- ---------- ---------- ---------- 9301 >AAUAU-UAU AA-AUA-UAA GUC-UAU-AA AU--(UAGU- AC(-GCAA)G GAUC-)AUUU 9361 A--UA-<--- ---------- ---------- -------->A UUAAUCA-AU GGUGAACUAU 9421 U|aaau-aau ------- 9541 auu-auuUAC GUAG-uauAG CUAA-AUUAA UAAA------ ---------- -------UAA 9601 ---------- --UAAGUAUU (GAAAGC--A UAUGA)A-AU -AC-GAAUUU GU-CUUA--- 9661 -UGGA--U-- -AUAAU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------u auauagu|GA 9961 UUG(UAUACU A--)UAAUCa uua------- ---------- ---------- ------aaua 10021 g|uuauu-ug --c------- ---------- ---------- ---------- ---------- 10081 ---------- --aaauaauu ucu------- ---------- --------(- ---------- 10141 ---------- -------uuu u)agaaa--- ---------- ---------- ---------- 10201 ----ug--ua u|a|aauaa- CUAau-u--- ---------- ---------- ----a-acua 10261 uauu------ ---------- ---------- --gcaauaua acuucuaauc uauauauuuu 10321 auuuuu--|- ---------- ---------- ---auauaua uuauauauau uaaaca~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.cerev 10775 bp RNA RNA 21-JAN-1983 DEFINITION Mitochondria Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Saccharomyces cerevisiae. ORGANISM Mitochondria Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 6463) AUTHORS No information JOURNAL Feb. 21 1983 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01527 Phylo:Mitochondria,Fungi,Saccharomyces BASE COUNT 1403 a 280 c 419 g 1171 t 7502 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~agu aaaaagua-g aauaauagau u-ugaaauau --uuau---- ---------- 241 -----uau-- ---------- ------auag --auuUAAAG AGAUAAUCA- ----UGGAGU 301 |AUA--aua| auu-aaau-u u|aauaaauu uaauauaacu auuaauaga| -auua(-ggu 361 uac------) u|aauaaau- uaauaac|aa u-uaau-(-u uuaaaaccua aggg(uaaa) 421 ccuuuau)-a uuaauaa--u guuauuu--- uuua------ ------uuau auuu------ 481 ---------- ---------- ---------- auaauaag-- ---------- -(-aau-a)- 541 ---------- --auuauuaa uaa<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uaauAAAC |UAAGUGAAC 841 UGA(AACA)U CUAAGUA--- -ACUUA---- ---------- ---------- ---AGGAUAA 901 GAAAUC(-AA CA)GA-G-AU |AUU-AUGA- -GUAU-U(-G GUGA)GAGAA -AAUAAUAA- 961 -AGGUCU------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---AAGUAUU AUGUGA(--- ---------- 1561 ----aaa)AA AUGUAAGAAA ----auAGGA U(AACAA-A) --UUCUA--A GACUA-AAUA 1621 ---cu-a-uu a-auaagUAU AGU------- --AAGUACC( -GUAA-)GGG ---AAA-GU- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --AUGAAAAU GAUU-AUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAAUCAUGA Auaua---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---uuauau 2041 --)---uaua UUAAUGAU-G UACCUU(UU- GUAUA)AUGG |GUC-AGCAA GU-----AA- 2101 UUAAUAUUAG UAA--aac-- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------aaua a)-------- ----gu-uau 2521 aaa-(-uaaa )--uag---- ---------- ---------- ------uuaA UUAAU-AUUA 2701 AUU-GACCCG AA-AGCAA-A CG-AUCUAAC UAU-GAU-AA GAUG------ g--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------c--- 2821 -GAUCGAA-C AG-GUUGAU( GUUGCAA-U) AUCA-UCUGA --UUAAUUG- UGGUUAG-UA 2881 GU(G-AAAG) ACA-AAUC-U G-GUUUGCAG AUAGCU-GGU UUUCU--AUG AA-AUA-UAU 2941 (-GUAA)GUA UA-GC-CUUU AUaa<----- ---------- ---------- ---------- 3001 ---------- -----auaau aauuauuaua uaauauuaua uuaauau>ua uau|-AAAGA 3061 A|UGGUAC|A GCAAUUA-AU AUauau--ua gggaacu-(a uuaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->-aguu uua-uu-aau 3301 aAU--Au-UA AAUCUCGA-- AAUA|-UUUa -a-uu--aua ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uau--AA-U -AAAG-AGUC AGAUU--AU- GU-GC(-GAU 3481 AAG)GUAAAU AA-UC----U AAAGGG(AAA -CAG)CCC-A GAUUAAG--A -UA-UAA--- 3541 --AGU-UCCU -AAU-AA-A- UAAUAAGUG- --------AA AUAA--AUA- UUAAAAUAUU 3601 AuA------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUAUA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAAU-G GGU(UUGACA 3781 AU-A)-ACCA -UUUU|U(U- AA)U|GAACA U(--GUAACA )AU|-GCAC- UGAUUUUAA-UA-U -UU-AAA|-A UCAAAUAUau auauauauau uuguuaauag auaaUAUACG 3961 GAUCU----- ---------- ---------- ---------- uaauaauaa- ---------- 4021 ---------- ---GAAUUAU UUAauuccua auauggaaua uuauauuuuu auaauaaaaa 4081 uauaaau|AC UGAA--UAU| C--U-AA|AU Auuauuauua c--------- --uu(uuuuu 4141 u-uu)aa--- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)-ua auaauaa-UA -U-----GGU AAUAG-AA|- CA-UUUAAUG A---UAAuau 4501 ---------A UAUUA-GUUA (uuaau--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->UA AUA--UAU-G U|AUUA---| -AUUAAAUAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AAA-GG-U-- (auaa----- ---------- ---------- 4741 ---------- -----)---A CCUUUu|CAC C-UAAA-ACA UAA--GGUU- -|----ua-- 4801 ---------- ---------- ----(--acu a-)---|--- ---uaa---- ---------- 4861 ---aagua-- -CGGCCCCUA A-U-U-A--- ---aau-(ua auaagaauau aaauau)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--auu---- -----U-AAG AU-GGGAu-- ----(aaucu auauuaauaa a--------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- --aauu--u- -aucu----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- agauCAGGA- ----AA-Uaa uu---- ---------- ---------- -ACCGUA|AU 6481 G--UAGACC- -(GACUCA)G G|UAUGU-AA GUA-(GAG-A A-----)-UA UGAAGGUGA| 6541 |--AUUAG-A U--AAUUAAA -GGGA-AGGA ACUCGGCAAA GAUAGC-UCA UAAG(UUAGU 6601 )CAAUAAAGA GUA|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(-au )a--agaaCA AAGUUGUA|C AA---CUG-U UU(ACUAA)A AA-CACC-GC 6841 ACUUUG|CA- -GAAAC---- ---------- (--gauaa-- ------)--- ---------- 6901 GUUUAAGUA- UAA-GGUGUG AACUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CC-AU|G CUUAAU-AUa UAAAUA-AA- 7021 --AUUAUu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aac)----gA UAAU--uuAA U-UAAAuu-| 7141 UA-GGUA-AA U-|AG-C|-A -GCCUU-(AU -UAUG)AGGG UU|A(UAA)- UG-UAGCGAA 7201 AUU-CC-U-U |GGCCUA(-U AAUU-)GAGG UC|CC-GCAU GAAUGACGUA A-UGAUACAA 7261 CA-------- ---------- -------ACU GUCUCCCCUU UAAG-CU-AA ----GUGAAA 7321 UU|G|AAAUC GU-AG(U-GA AGAUG)CUAU GUA----CCU UCAGCAAGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--A-AUU AGA--uaga| gaauu- au-----ugu -uuauuaua- uuc---AGCA 7501 UAUUAAGUA- -AUC------ ---------- -- --(------- -)-------- -------GAU 7681 AUUAAUGAGA UACUUAu|u- ----auaau- aua-a-ugau aauu-cuaau ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------AGAC AAUCU-C--A -AUU-GG-UA GUUUUGAUG( 8161 GGG)CG-UC- A|UUAUCA(- --------GC AAAAGUAUC- )UGAAUAA|G |U|CCau-|< 8221 aaauaaauau auaaaauuau ugaauaaaaa aauaauauau auuauauaua uuaauuauaa 8281 auugaaauau guuuauauaa auuuauauuu auugaauaua uuuuaguaau agauaaaaau 8341 ---------- ---------- ---------- ---------- ---------- ->A-UG-UAC 8401 -AG|--UAa- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----uUA|AU (A|UAAUG)G UAU-AAC-UG 8761 U-GCgAUAAU UGUAA-CAC( -aaacga--- )GUGAA-ACA A--------- ---------- 8821 ---------- --------GU AC-------- ---(GUAA-- -)-------- ----GUA-UG 8881 G|---CAUAA UGAAC-AAAU AA-C------ ---------- ACU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GAUUGU AA)AG|GUUA 9001 UUG-AUAAC- |GAAUAAAAG UUACGC|UAG G|GAUAACAG |G-GUA-A-U AUAGCGAAAG 9061 AG(U--AGAU )AUUGUAAGC --UAUGUUUG CC-ACCUCGA UGUC|GA--C U|C|AUCAU| 9121 UU-CC-UCUU GG-UU(--GU AAA)AGCUAA GAAG-GGU|U UGAC(UGUUC )GUCAA-UUA 9181 A--AAUGUU- --ACGUGAGU UGGGUUAAAU AC|GA-U(GU GA)AUCAGUA UGGUUCCUAU 9241 CU|GCUGA-A GG|A|<---- ---------- ---------- ---------- ---------- 9301 >AAUAU-UAU CA-AAU-UAA AUC-UCA-UU AU--(UAGU- AC(-GCAA)G GACC-)AUAA 9361 U--GA-<--- ---------- ---------- -------->A UCAACCC-AU GGUGUAUCUA 9421 U|-UGA-UAA ------- 9541 UUA-UCAUAG UAGA--UAAG CUAA-GUUGA UAA------- ---------- -------UAA 9601 ---------- -AUAAAUAUU (GAAUAC--A UAUUA)A-AU -AU-GAAGUU GU-UUUA--- 9661 -AUAA--G-- -AUAAU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- --------ua aucugau|AA 9961 UUU(UAUACU A--)AAAUUA Auaau----- ---------- ---------- ------uaUA 10021 G|GUuuuaua uau------- ---------- ---------- ---------- ---------- 10081 ---------- --uauuuaua aauaaauaua uuauaauaau aauaauua(u uauuauuaau 10141 aaaaaauauu aauuauaaua u)-------- ---------- ---------- ---------- 10201 --------ua a|u|aaaAUA CUAau-u--- ---------- ---------- ----u-auca 10261 guuaucuaua uaaua----- ---------- --------uc uaaucuaauc uauuauucua 10321 uauacu--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.W.satur 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Williopsis saturnus var. mrakii.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Williopsis saturnus var. mrakii. ORGANISM Mitochondria Williopsis saturnus var. mrakii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X71392 ID MIWMTRNAV standard; DNA; ORG; 3709 BP. XX AC X71392; XX DT 16-APR-1993 (Rel. 35, Created) DT 16-APR-1993 (Rel. 35, Last updated, Version 2) XX DE W.mrakii mitochondrial DNA for tRNA-Val, 15S rRNA and 21S rRNA DE (partial) XX KW 15S ribosomal RNA; 21S ribosomal RNA; ribosomal RNA; KW small subunit ribosomal RNA; transfer RNA; transfer RNA-Val. XX OS Williopsis mrakii OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX OG Mitochondrion XX RN [1] RP 1-3709 RA Drissi R.; RT ; RL Submitted (07-APR-1993) on tape to the EMBL Data Library by: RL R. Drissi, Institut Curie Biologie, Bat 110 Centre Universitaire, RL 91405 Orsay Cedex 13, FRANCE XX RN [2] RP 1-3709 RA Drissi R., Sor F., Fukuhara H.; RT "DNA sequences coding for the ribosomal small subunit RNA and Vayl RT tRNA from the lineard mitochondrial genome of Williopsis mrakii"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..3709 FT /organism="Williopsis mrakii" FT /mitochondrion FT /strain="CBS 1707" FT promoter 42..50 FT /note="15S rRNA promoter" FT rRNA 50..1666 FT /product="15S ribosomal RNA" FT tRNA 1822..1895 FT /product="tRNA-Val" FT promoter 1955..1963 FT /note="21S rRNA promoter" FT rRNA 1963..>3709 FT /product="21S ribosomal RNA" XX SQ Sequence 3709 BP; 1530 A; 324 C; 497 G; 1358 T; 0 other; BASE COUNT 741 a 153 c 246 g 607 t 9028 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~aaau- uaauaa---- ---------- --aaaa--u- -----uga-- 421 -----au-a- ------a--u guuaugaug- --uac----- ag-------- -------auu 481 -uga-aaagu gu-ugua--- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- -------uga cauuaacggg uuauucaagg 721 aauauauugc uauuaauaaa uaagguuaau aauaauauaa aauauauaua uauugauaua 781 uauauauuga uauauuuaau accuaaggga aaccauaa>- --uaauAAAC |GUGAAGAAC 841 UGA(AUCA)U CUAAGUA--- -UUCAU---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AA)GA-G-AU |AUU-AUGA- -GUAA-U(-G GCGA)GUGAA -AGUAAUaa- 961 -agucgu<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- --<-uaguaa 1381 aaau------ ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---aaguauu auuuua(--- ---------- 1561 ---ucaa)ga aaGUAAGAAA ----auAGAU -(AACUA-A) --AUCUA--A GACUA-AAUA 1621 ---UU-AUUA A-UAAGC-AU AAA------- --AAGUACC( -GAAA-)GGG ---AAA-au- 1681 a--------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --uga-aaug ga-u-aau-c u-<------- ---------- ---------- ---------- 1861 ----->AUAA GCaacaugag auuu----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaaa 2041 --)---uaga uuuaaugu-G UACCUU(UU- GCAUA)AUGG |GCC-AGCAA GU-----AA- 2101 UGUAAUUUAG CAA--aau-- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------auau u-auau-uau 2521 aua---uaaa ---uag-aau a--------- uauaaugau- ----aa--au uaauuuauug 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aaau guuaa----- ---------- ---------- ---u---AAG UUAAA-UUAC 2701 AUU-GGCCCG AA-AAUAA-A AG-AUCUUAU UAU-UAC-AA GAUAuau--- ---------- 2761 -(-------- ---------- -------aau uaaugaaaau uaauuuauu) ---------- 2821 -GAUCGAA-U GG-GUUAAU( GUUGCAG-U) AUUA-UCCAA --UUAGUGA- UGAUAAGUAA 2881 GU(G-AAAG) ACU-AACC-U G-UUUUAUAG AUAGCU-GGU UCUCU--GUG AA-AUA-UAU 2941 (-GUUA)GUA UA-GC-gauu uaau<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------a>aa aua|-auuau 3061 a|agguau|a gcacuua-au auuuu----- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------a 3241 auuauca-uu aauuuauuaa ugauaaaugg ggguuaauaa uuaa------ -cu-ua-uca 3301 uguauau-uu aaucucau-- aaua--uuau -a-au--uau ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aaa--uu-a -aauu-AGUC AGACU--AU- AU-GC(-GAU 3481 AAG)GUUUAU AG-UC----G AAAGGG(AAA -CAG)CCC-U AAAUUAC--A -UU-UAA--- 3541 --GGU-UCCA -AAAUAU-G- GAUUAAGUG- --------aa uaaaaugua- uuaauuguca 3601 u--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAUCA-AUUA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUGGU-G GGU(UUGACA 3781 AU-A)-ACUA -UCCU|A(U- AA)U|GAACA U(--GUAACA )AU|-GCAC- UAAUAUucg-au-a -au-uaa|ua cagauaa--- ---------- ---------- ----UAUACG 3961 GAUCU----- ---------- ---------- ---------- cgu------- ---------- 4021 ---------- ----AAAUCC AUU------- ---------- ---------- ---------- 4081 -------|AC CGAU--AAU| G--A-AU|au auuaauauau -------ucu uccgugucgg 4141 augc(cacuc )gcgucgccc ucggacuaaa uaa------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)-au auauuaa-UA -U-----GGU AACAG-AG|- CA-UAUAAUA A---ACUuua 4501 u--------a uaaua-auua (-------)< gauuaauuau uauauuauau aauuauaaua 4561 uaauuauaua cuuaauaaau auauaacuuu aauuuauuuu uaaaauaaau guauugaaua 4621 aauau----- ------->uu auu--auu-a a|UAGUU--| AAUUAUAUUG AUAAUGC-UG 4681 GC|AUGAGUA -GCGA-AAA- AUA-AGUAU- (--aau---- ---------- ---------- 4741 ---------- -----)-u-u uuuau-|aaa u-uaua-uaa acu--uauuc -|---acaua 4801 ---------- <--------- --->(--aua ca)---|--- -uaugg---- -------uuu 4861 uacuauaaau uCGGUCCUUA A-GUU-G--- guuuac-(ag auuua----- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-guaa---a -----C-ACG AU-AGGuu-- ----(uaauu uauuauuaua gauauau--- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- --auuu-auu auaua----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uguacaaga- ----aa-uaa aua--- ---------- ---------- -ACCGUA|AU 6481 U--AAGACC- -(GACACA)G G|UGUGUAUA GUA-(GAG-A A-----)-UA UGAAAGUGA| 6541 |--AUGGA-U G--AAGUAUU -CGGA-AGGA ACUCGGCAAA AAAUAC-CUC CACG(UUUGU 6601 )CAAUAAAGG GAA|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(auu )a--aaaaUA AGAUUAUA|C AA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 ACAUUG|CG- -GAUAU---- ---------- (--aaaa--- ------)--- ---------- 6901 AUAUUAGUA- UAA-UGUGUG Aauuc~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 7141 ~~~~~~~~~~ ~~|~~~~|~~ ~~~~~~~(~~ ~~~~~)~~~~ ~~|~(~~~)~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ |~~~~~~(~~ ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~|~|~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~|~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7741 ~~~~~(~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 8161 ~~~)~~~~~~ ~|~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~|~ |~|~~~~~|< 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ 8401 ~~~|~~~~~~ ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ (~|~~~~~)~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 8881 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~|~~~~ 9001 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.sinus 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Suillus sinuspaulianus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Suillus sinuspaulianus. ORGANISM Mitochondria Suillus sinuspaulianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: UNP00109 ; sequence of mt-LrRNA of S. sinus start at Cla I and end at EcoR I, sequence ; almost double-direction sequenced ; 5' and 3' termini unknown FULL_MTLRRNA_SINUS_CLAI_TO_ECORI BASE COUNT 1572 a 509 c 737 g 1398 t 6559 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~aucgau gacauauu-- --guuuuaac aucaa----- 241 --aaaaaaa- -------uuu aauuuauaag uauuuUAAAG GGGUUAUUA- ----AGGAUA 301 |ACU--AGC| AAA-UUUA-U A|aaaaag-- ---------- ----gagg-- -caaaa-gcc 361 a-aa-----a g|ccaucaa- uacagau-aa a-auuauaau uuuauauaug gaaucugugu 421 gcgagaaugu ggcg------ ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- -aucuaaggg aaaccu-ua- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- uuauuaUUAC |UUCCCGAAG 841 UAA(AACA)U UUCAUUA--- -GGGAA---- ---------- ---------- ---AGGAAAG 901 GAAAUC(-AA CC)GA-G-AC |UCC-GAAA- -GUAA-U(-G GUGA)GUGAA -AUCGGAUU- 961 -AGCCUG<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- --auuuuuuu uauauaaaau aaaaauugau uaaaaauaua uuuaauuuua 1081 uucuuauuua aagaugacaa aauaagugaa aguuaaaau- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- --------cu ggugaaagu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)au uucau----- ua-|a(gaa) 1321 uaacuua(ac aaau-)uaaa uu--aguuuu uaguaugagu aaauau---- ----AAGUACG AUGAGA(--- ---------- 1561 ---gaua)AC UUGUCGGAAU ----auAGGG G(AACCA-U) -CCUCUA--A GGCUA-AGUA 1621 ---UuaUAAA U-UUAGCGAU AGUG-AA--- -AAAGUACC( -GUGA-)GGG ---AAAAGU- 1681 ugaaaagugu gagggucaau aauuauuaga uauagcuaga aauaauauau ugagaauuau 1741 aacccuugaa aguaaau--a acgc------ ---------- ------AGUG AA--AUAG-- 1801 ACUUG-AAUU AGUA-ACU-C U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGUCGAAA Uuucu---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ------uuaa aauagaacg> (--------- 2041 --)---agag AUGACGGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUAGGAGUAG CAA--gguua a------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------aaac c)-------- --uuag-cga 2521 aag-(-cga- )--cugucaa aa(aaga--) ua-augg--- -----guaaG UUACU-UCUA 2701 UUA-GACCCG AA-GCCAG-G UG-AUCUUUC UAG-GAC-CA GAUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auaaug) ---------- 2821 -GAUCGAA-C GG-GUGAAU( GUUGCAU-A) AUUC-UCCGA --AGAGUCC- UUGAAAG-CG 2881 GC(G-AAAU) ACC-AAUC-U G-ACCUGGUG AUAGCU-GGU UUUCU--ACG AA-ACA-UAU 2941 (-UUAA)GUA UG-AC-AUCU ACAC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa AAU|-UUAUG 3061 G|AGGUAC|A GCACggc-aa uu-ccc---- ---------- ---------< aacaaguuuu 3121 ag-------- ---aauagua cauuu----- ---------- ---------- ---------- 3181 ---------- --------uu au-------- ---------- -aaauuuauu uauuuuauua 3241 gga------- guuuagguug cggggaccuc gaaaaucuua ccaa>----- --------ug 3301 gaa---g-ug aAACUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGU AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-CauG -AU-UAA--- 3541 --GGU-CCCC -AAU-GA-U- UAUUAAGUG- --------AA AUAAAGGAA- GUAACAAAUU 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUGCA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G AGC(UUGGUA 3781 GU-A)-GCUA --CUU|A(U- AA)U|GAUCG U(--GUAACA )AC|-GCAU- CAGCCCUAG-AG-U -GU-UGC|-G CCGAAAAU-- ---------- ---------- ----UCAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAAUAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|UA Auuuuaaaua aaaauuuauu auuuguuuau 4141 aauuuauaga caaauauauc auaaacuuuu uauaaauaau uaauuauaca aaauaaaauu 4201 uuaucuugaa cuauuaauua auuauuuguu auuuaauuua auuauuuaaa aauuaauaua 4261 aauuaguuua auauuuccca uuuauaugaa auauguuaau aaaaaaaaua auacaaauuu 4321 uuaaauaauu aauuuuguuu uuaauaguuu aaaguauaau auaaauauaa uuuauaauua 4381 gauuuuuaua uuguuaauau auuauauuua ucuuaauuua auauauuauc uuuauuuu(- 4441 ------)--a uuuaaaauCU -A-----GGU AGUAG-AA|- CA-UUCAGAU A---UUUuaa 4501 auccccauga uuaac-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uug--uuc-a u|AGGA---| AUCUGAAGAG AUAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-aa-g-- (aaaaaauua gaucgagagg ucuuugaagu 4741 uuuaaa---- -----)---c uuucu-|CGC C-GAAU-ACG AAA--GGGUu -|----auua 4801 gcuaa---ag <--------- --->(-auua aa)u-c|-aa cuaaug---- ---------- 4861 ---uuauag- -CGGUCUCUA A-G-G-U--- acaaaac(-c aau------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-guuu---u g----G-CUG AU-GAGuu-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-U A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAA UUAUCC-UCA UAAG(UUCGA 6601 )CGACAA-GA GGA|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(GCA )C--AAAAUC GGAAGCCC|C GA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 UAUCUG|CA- -ACGAU---- ---------- (--GUAA--- ------)--- ---------- 6901 AUCAUAGUA- UAG-GUAGUG AGGUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-AAg 7021 --UGAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uaa)----CU GUUA-aUUAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCAU(-U AAAU-)GUGG UC|CG-GUAU CAAUAAUUUA A-CGAUGGCU 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CC-CG(U-GC AGAUG)CGGG UUG----CCA CCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AAU--CAUC| auuaa- ucuagaacaa -ccuuaguc- aau---AGCA 7501 AAUAGGUAU- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaaaauugga agaccuu|aa ---gucuag- g-g-u-uggg uuaa-uguuu accu-uu-uu 7741 auuu-(--aa caca)-aaau ---------- ---------- --------aa ---aaugg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAGA GCUGA-U-UG -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauaaaauu aauuauaaaa uauuuacuau uaa-uaauau uaauguguaa auauucucac 8281 aaauaucaua uugcuguaaa uuuuuaauuu acuuuaacau caauuuuuau uuuuuguuuu 8341 uaua------ ---------- ---------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------uaa 8461 cc(agugaua a)gguuaugg a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GG|GC (G|CAAUG)G CGGUAAG-CA 8761 U-GC-UUAAC UGAUA-GAC( -uuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAUGG A-)UA|GACG 9001 GGA-UCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAACAG |G-CUG-A-U AGCCGGCGAG 9061 AG(U--ACAC )AUUGUCCCG --GCUGUUUG GC-ACCUCGA UGUC|GA--C U|U|AUCCU| 9121 AU-CC-UCCG GG-GG(--AA -GA)AGCUUG GAAG-GGU|U CGGC(UGUUC )GCCGA-UUA 9181 A--AAGGUU- --ACAUGAGU UGGGUUUAAU AC|GA-C(GU GA)GUCAGUA UGGUCCCUAU 9241 CU|UCUGG-U GG|G|<---- ---------- ---------- ---------- ---------- 9301 >ACAAA-UAG UA-AAA-AGG GGG-aga-cc uuc-(CAGU- AC(-GAAA)G GACCa)auag 9361 g--au-<--- ---------- ---------- -------->G UGUUUCU-CU AGUGUACCAA 9421 U|-UGU-UGA ------- 9541 UUG-GCAUAG UUGG--GUAG CCAC-AAACA UAU------- ---------- -------UAG 9601 ---------- -AUAAGAGCU (GAUUGU--A UAUAA)A-GC -AC-GAAACU AUCCCCU--- 9661 -AGAU--A-- -CUAUC---| ------(--- )--------- ---auua|ag 9961 aaa(uagaac a--)uuucuu u--------- ---------- ---------- ------aaua 10021 g|gaugcaaa ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---ugaauuc ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.luteu 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Suillus luteus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Suillus luteus. ORGANISM Mitochondria Suillus luteus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: UNP00110 Thesis: Yunan Li, University of California at Berkeley BASE COUNT 348 a 168 c 224 g 315 t 9720 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~-~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|----~~~~ 4801 ~~~~~~~~~~ <~~~~~~~~~ ~~~>(-~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~------- ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~C- -(GACACA)G G|UUCGU-AG GUA-(GAG-U A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAA UUAUCC-UCU AAAG(UUCGA 6601 )CGACAA-GA GGA|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(GCA )C--AAAAUC GGAAGCCC|C GA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 UAUCUG|CA- -ACGAU---- ---------- (--GUAA--- ------)--- ---------- 6901 AUCAUAGUA- UAG-GUAGUG AGGUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-AAG 7021 --UGAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uaa)----CU GUUA-aUUAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCAU(-U AAAU-)GUGG UC|CG-GUAU CAAUAAUUUA A-CGAUGGCU 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CC-CG(U-GC AGAUG)CGGG UUG----CCA CCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AAU--CAUC| auuaa- ucuagaacaa -cuuuaguc- aau---AGCA 7501 AAUAGGUAU- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaaaauugga agaccuu|aa ---gucuag- g-g-u-uggg uuaa-uguuu accu-uu-uu 7741 auaa-(--gc aaaa)-uuau ---------- ---------- --------ag ---aaugg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAGA GCUGA-U-UG -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauaaaauu aa-uaaaaaa uauuuacuau uaaauaauau uaauguguaa auauucucac 8281 aaauaucaua uugcuguaaa uuuuuuauuu acuuuaacau caauuauuau uuuuuguuuu 8341 uaua------ ---------- ---------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------uaa 8461 cc(agugaua a)gguuaugg a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GG|GC (G|CAAUG)G CGGUAAG-CA 8761 U-GC-UUAAC UGAUA-GAC( -uuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UAAUGG AA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAACAG |G-CUG-A-U AGCCGGCGAG 9061 AG(U--ACAC )AUUGUCCCG --GCUGUUUG GC-ACCUCGA UGUC|GA--C U|U|AUCCU| 9121 AU-CC-UCCG nn-nn(--nn -nn)nnnnnn nnnn-nnn|n nnnn(nnnnn )nnnnn-nnn 9181 n--nnnnnn- --nnnnnnnn nnnnnnnnnn nn|nn-n(nn nn)nnnnnnn nnnnnnnnnn 9241 nn|nnnnn-n nn|n|<---- ---------- ---------- ---------- ---------- 9301 >nnnnn-nnn nn-nnn-nnn nnn-nnn-nn nnn-(nnnn- nn(-nnnn)n nnnnn)nnnn 9361 n--nn-<--- ---------- ---------- -------->n nnnnnnn-nn nnnnnnnnnn 9421 n|-nnn-nnn ------- 9541 nnn-nnnnnn nnnn--nnnn nnnn-nnnnn nnn------- ---------- -------nnn 9601 ---------- -nnnnnnnnn (nnnnnn--n nnnnn)n-nn -nn-nnnnnn nnnnnnn--- 9661 -nnnn--n-- -nnnnn---| ------(--- )--------- ---nnnn|nn 9961 nnn(nnnnnn n--)nnnnnn n--------- ---------- ---------- ------nnnn 10021 n|nnnnnnnn ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---nnnnnnn ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.papil 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Trimorphomyces papilionaceus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Trimorphomyces papilionaceus. ORGANISM Mitochondria Trimorphomyces papilionaceus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X73672 ID TPLSRRA standard; DNA; ORG; 2817 BP. XX AC X73672; XX DT 08-JUL-1993 (Rel. 36, Created) DT 08-JUL-1993 (Rel. 36, Last updated, Version 3) XX DE T.papilionaceus mitochondrion gene for large subunit rRNA, exons 1 DE and 2 XX KW large subunit ribosomal RNA. XX OS Trimorphomyces papilionaceus OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; OC Phragmobasidiomycetes; Heterobasidiomycetidae; Eutremellales; OC Tremellaceae. XX OG Mitochondrion XX RN [1] RA Hong S.G.; RT ; RL Unpublished. XX RN [2] RP 1-2817 RA Hong S.G.; RT ; RL Submitted (28-JUN-1993) on tape to the EMBL Data Library by: RL S.G. Hong, Seoul National University, Dept of Microbiology, San RL 56-1 Shinlim-Dong, Kwanak-ku, Seoul 151-742, KOREA XX FH Key Location/Qualifiers FH FT source 1..2817 FT /organism="Trimorphomyces papilionaceus" FT /mitochondrion FT mRNA join(1..1090,2681..2817) FT /note="large subunit RNA" FT /gene="LSU rRNA" FT intron 1091..2680 FT /number=1 FT /gene="LSU rRNA" FT exon 1..1090 FT /number=1 FT /gene="LSU rRNA" FT CDS 1510..2193 FT /note="orf" FT exon 2681..2817 FT /number=2 FT /gene="LSU rRNA" XX SQ Sequence 2817 BP; 952 A; 458 C; 552 G; 855 T; 0 other; BASE COUNT 404 a 196 c 277 g 350 t 9548 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~ucu auccugc-ca gacu------ ---------- 2761 -(-------- ---------- ---------- ---------- ------aua) ---------- 2821 -GGUCGAA-c gg--uucau( guugcag-u) aug--uccga --ugagcug- aggaugu-ag 2881 gu(g--aag) gcc-aauc-u g-acaaagau AUAGCU-GGU ACUCC--UCG AA-ACG-UAU 2941 (-AUAG)GUA CG-GC-CCUC UAAuua gau|-uuacg 3061 c|AGGUAC|A GCACug--au ug-cc----- ---------- ---------< auacuaugcu 3121 aaac-----a aaaauuuag- ---c------ ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- -----uuauu ua-------- 3241 ---------- guu-caauug -gggga-ucg ugagauucua ccau------ --------ug 3301 gua---g-uu aacCUCGG-- AAUU|-ACGU -aua---auu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--AU-A -GAGG-AGAC AGACU--AU- UC-AU(-GAU 3481 AAG)GUG-AU AG-UC----G AGACGG(AAA -CAG)CCG-U GAGCA-U-AG -AU-AAA--- 3541 --GGU-CCCA aAAU-AG-U- GGUUAAGUG- --------AA AAUAAGGAa- guuaugaucc 3601 c-C------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUA U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G UGC(UCGGAA 3781 GU-A)-GCAA -UCUU|U(U- AA)u|gauag u(--guaaca )ac|-uua-- --guagagg-au-c -au-agc|-g ccuaagau-- ---------- ---------- -----UAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---aagacca cuu------- ---------- ---------- ---------- 4081 -------|AC CGAU--ACU| A--U-GC|c- guuaguuguu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aauuau)-aa cagcuaa-UU -G-----GGU AGAGG-AG|- CA-UUCAGC- ----auggua 4501 g--------a agaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuu-c g|acau---| AGCUGAAGAG AAUAUGC-CA 4681 AC|AUGAGUA -ACGU-AGAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-GAG AAA--GGGuu -|----ccau 4801 auaaa---ug <--------- --->(--uua aa)c-a|-ga uauggg---- ---------- 4861 ---uuaaaa- -CGGCCUCUA A-G-a-u--- aaauagc(ua uuag------ ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---u uu---a-uag au-gaguu-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCUC-GG GUA-(GAG-U A-----)-UA CUAAGGCG-| 6541 |--AUGAG-A U--AA--uac -uau--AUAG ACUCGGCAAA U-GCAU-CCG UACA(CUCGA 6601 )UAAGAA-GG AUG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AUAAUC GGAGGC-A|U GA---CUGGU UU(ACCAA)A CA-CA---GG 6841 UAUCUG|CU- -AUAAU---- ---------- (-UUAAU--- ------)--- ---------- 6901 UAUGUUGUA- UAG-GUACUG AAUCUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G UUCCG-AU|G CCAUGA-GUA UAA------- 7021 --UAAUAG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- --------gg uaauaucuua ucu)----CU GUUA-a-aac c------U-| 7141 CU-GGUC-AA U-|GA-U|-A -GUCUU-(AA CUAUA)AGGA UU|C(UAA)- GG-UAGCUGA 7201 AUG-CCGUGU |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUAGAGUA A-CAAUGCCU 7261 CU-------- ---------- -------GCU GUCUCAUAUA GUAU-CU-CA ----GUGAAA 7321 UU|G|AAUUA GC-CG(U-GA AGAUG)CGGU UUA----CGU GCGGGUAGAC GGGAgg-gc- 7381 ---------- ---------- ---------- ---------| ~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7741 ~~~~~(~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~-~~ -~~~~~~~~~ ~~~~~~~~~( 8161 ~~~)~~~~~~ ~|~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~|~ |~|~~~~~|< 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ 8401 ~~~|~~~~~~ ~~~~~~<~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ (~|~~~~~)~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 8881 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~|~~~~ 9001 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.lacca 10775 bp RNA RNA 21-JUL-1998 DEFINITION Mitochondrion Laccaria laccata.; . ACCESSION AF006486 KEYWORDS . SOURCE Mitochondrion Laccaria laccata. ORGANISM Mitochondrion Laccaria laccata. REFERENCE 1 (bases 1 to 538) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE ectomycorrhizal basidiomycete Laccaria bicolor in forest plantations Does introduced mitochondrial genome persist independantly of co-introduced nuclear genomes? The case of the JOURNAL Symbiosis (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1830) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Survival of an introduced ectomycorrhizal Laccaria bicolor strain in an European forest plantation confirmed by mitochondrial analysis JOURNAL New Phytol. (1998) In press STANDARD No information REFERENCE 3 (bases 1 to 538) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (02-JUN-1997) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information REFERENCE 4 (bases 1 to 1830) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (21-JUL-1998) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF006486 BASE COUNT 657 a 263 c 343 g 567 t 8945 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~uuga)ugu cu-ac----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- --aauaauau aaaaaca>ga AAU|-UUAUG 3061 G|AGGUAC|A GCAaggc-aa uu-ccc---- ---------- ---------< aacaaauuua 3121 aggu-----a aaacaaaaau ucuuuuuuug uuuuauauuu uuauuauuau uuuuauaauu 3181 auaaaaauuc uauuuauaag auaaaauaau uuauaucaaa uuaacagacu caauaaguag 3241 ccuuaucugc guucagguug cggggaucua gacaaucuua ccuu>----- --------ug 3301 gaa---g-cg aauCUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGC AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-C-UG -AU-CAA--- 3541 --GGU-CCCA -AAU-GA-U- UGUUAAGUG- --------AA AUUAAGGAC- GUAGCAAUAU 3601 cga------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-G AGC(CUGGCA 3781 GU-C)-GCUA --CUU|A(U- AA)U|GAUCG U(auguaaca )AC|-GCAU- CAGCAGuag-au-a -gu-aGC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|U- gguuaauaau aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)uug uuauuaauCU -A-----GGU AGUAG-AA|- CA-UUCAGUA aaacuuuaaa 4501 u--------- cgaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuuug u|agga---| UACUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-ACG AAA--GGGUu -|gcaaauag 4801 g-aaa---gg <--------- --->(--uua au)c-c|-gu uuuguu---- ---------- 4861 ---uuaaug- -CGGCCUCUA A-G-g-g--- auguagc(-u aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---- cu---a-cuG AU-GAGuc-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-A A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAG AUCUCC-UCC UAAG(UUUGA 6601 )CGACAA-GA GGG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AAAAUC GGAGGCCA|C GA---CUG-U UU(ACUAA)A AA-CACA-AC 6841 ACAGUG|CA- -AUCAU---- ---------- (--UAAU--- ------)--- ---------- 6901 AUGAUAGUA- UAC-UGUGUG AAAUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-CGa 7021 --UCAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)----CU GUGA-uUAAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCUU(-U AAAU-)GAGG UC|CG-GUAU CAAUAAUGUA A-CGAUGGUC 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CG-CG(U-GC AGAUG)CGCG UUG----CCU UCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AGU--UAUC| augaa- ucuagaacaa -ucaaaauu- aau---AGUG 7501 AAUAGGGAA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaauagugga aaccuua|aa ----auucu- g-a-u-uggg uuua-uguuu acc--uu-aa 7741 auuu-(--aa uaaa)-aaa- ---------- ---------- ---------- ---a--gg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAGA GUUUA-C-UA -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauuucauu uaaaacuaaa aauuuauugu uuuauaaauu uuauuacaaa aaacuuuauu 8281 uuauuuuagu auaauuuaaa guaauaauua auuuuaauua auuaacauuc uaaauuuuuc 8341 uuucuaauca uuaauuuuau a--------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------caa 8461 cc(aguga-a g)gguugcgc a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GA|GU (U|CAAUG)G CGAUAAG-CA 8761 U-GC-UUAAC UGAAA-GAC( -cuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AUAUGG GA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAA~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.bic.1 10775 bp RNA RNA 04-AUG-1998 DEFINITION Mitochondrion Laccaria bicolor.; . ACCESSION AF079306 KEYWORDS . SOURCE Mitochondrion Laccaria bicolor. ORGANISM Mitochondrion Laccaria bicolor. REFERENCE 1 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Survival of an introduced ectomycorrhizal Laccaria bicolor strain in an European forest plantation confirmed by mitochondrial analysis JOURNAL New Phytol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (20-JUL-1998) Microbiologie Forestiere, INRA, Foret d'Amance, Champenoux 54280, France STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF079306 BASE COUNT 663 a 264 c 344 g 568 t 8936 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~uuga)ugu cu-ac----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- -aaauaauau aaaaaca>ga AAU|-UUAUG 3061 G|AGGUAC|A GCAaggc-aa uu-ccc---- ---------- ---------< aacaaauuua 3121 aggu-----a aaacaaaaau ucuuuucuug uuuuauauuu uuauuauuau uuuuauaaua 3181 auaaaaauuc uauuuauaag auaaaauaau uuauauuaaa uuaacagaca caauaaguag 3241 ccuuaucugc guucagguug cggggaucua gaaaaucuua ccuu>----- --------ug 3301 gaa---g-cg aauCUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGC AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-C-UG -AU-CAA--- 3541 --GGU-CCCA -AAU-GA-U- UGUUAAGUG- --------AA AUUAAGGAC- GUAGCAaUAU 3601 cga------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-G AGC(CUGGCA 3781 GU-C)-GCUA --CUU|A(U- AA)U|GAUCG U(auguaaca )AC|-GCAU- CAGCAGuag-au-a -gu-aGC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|U- gguuaauaau aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)uug uuauuaauCU -A-----GGU AGUAG-AA|- CA-UUCAGUA aaacuuuaaa 4501 u--------- caaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuuug u|agga---| UACUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-ACG AAA--GGGUu -|gcaaauag 4801 g-aaa---gg <--------- --->(--uua au)c-c|-gu uuuguu---- ---------- 4861 ---uuaaug- -CGGCCUCUA A-G-g-g--- auguagc(-u aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---- cu---a-cuG AU-GAGuc-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-A A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAG AUCUCC-UCC UAAG(UUUGA 6601 )CGACAA-GA GGG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AAAAUC GGAGGCCA|C GA---CUG-U UU(ACUAA)A AA-CACA-AC 6841 ACAGUG|CA- -AUCAU---- ---------- (--UAAU--- ------)--- ---------- 6901 AUGAUAGUA- UAC-UGUGUG AAAUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-CGa 7021 --UCAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)----CU GUGA-uUAAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCUU(-U AAAU-)GAGG UC|CG-GUAU CAAUAAUGUA A-CGAUGGUC 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CG-CG(U-GC AGAUG)CGCG UUG----CCU UCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AGU--UAUC| auaaa- ucuagaacaa -ucaaaauu- aau---AGUG 7501 AAUAGGUAA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaauagugga aaccuua|aa ----auucu- g-a-u-uggg uuua-uguuu acc--uu-aa 7741 auuu-(--aa uaaa)-aaa- ---------- ---------- ---------- ---a--gg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAUA GUUUA-C-UA -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauuucauu uaaaacuaaa aauuuauugu uuuauaaauu uuauuacaaa aaac-----u 8281 uuauuuuagu auaauuuaaa guaauaauua auuuuaauua auuaacauuc uaaauuuuuc 8341 uuucuaauca uuaauuuuau a--------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------caa 8461 cc(aguga-a g)gguugcgc a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GA|GU (U|CAAUG)G CGAUAAG-CA 8761 U-GC-UUAAC UGAAA-GAC( -cuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AUAUGG GA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAA~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.bic.2 10775 bp RNA RNA 21-JUL-1998 DEFINITION Mitochondrion Laccaria bicolor.; . ACCESSION AF006485 KEYWORDS . SOURCE Mitochondrion Laccaria bicolor. ORGANISM Mitochondrion Laccaria bicolor. REFERENCE 1 (bases 1 to 533) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE plantations Does introduced mitochondrial genome persist independantly of co-introduced nuclear genomes? The case of the ectomycorrhizal basidiomycete Laccaria bicolor in forest JOURNAL Symbiosis (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Survival of an introduced ectomycorrhizal Laccaria bicolor strain in an European forest plantation confirmed by mitochondrial analysis JOURNAL New Phytol. (1998) In press STANDARD No information REFERENCE 3 (bases 1 to 533) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (02-JUN-1997) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information REFERENCE 4 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (21-JUL-1998) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF006485 BASE COUNT 662 a 267 c 345 g 565 t 8936 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~uuga)ugu cu-ac----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- -aaauaauau aaaaaca>ga AAU|-UUAUG 3061 G|AGGUAC|A GCAaggc-aa uu-ccc---- ---------- ---------< aacaaauuua 3121 aggu-----a aaacaaaaau ucuuuucuug uuuuauauuu uuauuauuau uuuuauaaua 3181 auaaaaauuc uauuuauaag auaaaauaau uuauauuaaa uuaacagaca caauaaguag 3241 ccuuaucugc guucagguug cggggaucua gaaaaucuua ccuu>----- --------ug 3301 gaa---g-cg aauCUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGC AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-C-UG -AU-CAA--- 3541 --GGU-CCCA -AAU-GA-U- UGUUAAGUG- --------AA AUUAAGGAC- GUAGCAAUAU 3601 cga------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-G AGC(CUGGCA 3781 GU-C)-GCUA --CUU|A(U- AA)U|GAUCG U(auguaaca )AC|-GCAU- CAGCAGuag-au-a -gu-aGC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|U- gguuaauaau aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)uug uuauuaauCU -A-----GGU AGUAG-AA|- CA-UUCAGUA aaacuuuaaa 4501 u--------- caaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuuug u|agga---| UACUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-ACG AAA--GGGUu -|gcaaauag 4801 g-aaa---gg <--------- --->(--uua au)c-c|-gu uuuguu---- ---------- 4861 ---uuaaug- -CGGCCUCUA A-G-g-g--- auguagc(-u aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---- cu---a-cuG AU-GAGuc-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-A A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAG AUCUCC-UCC UAAG(UUUGA 6601 )CGACAA-GA GGG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AAAAUC GGAGGCCA|C GA---CUG-U UU(ACUAA)A AA-CACA-AC 6841 ACAGUG|CA- -AUCAU---- ---------- (--UAAU--- ------)--- ---------- 6901 AUGAUAGUA- UAC-UGUGUG AAAUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-CGa 7021 --UCAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)----CU GUGA-uUAAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCUU(-U AAAU-)GAGG UC|CG-GUAU CAAUAAUGUA A-CGAUGGUC 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CG-CG(U-GC AGAUG)CGCG UUG----CCU UCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AGU--UAUC| auaaa- ucuagaacaa -ucaaaauu- aau---AGUG 7501 AAUAGGUAA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaauagugga aaccuua|aa ----auucu- g-a-u-uggg uuua-uguuu acc--uu-aa 7741 auuu-(--aa uaaa)-aaa- ---------- ---------- ---------- ---a--gg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAUA GUUUA-C-UA -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauuucauu uaaaacuaaa aauuuauugu uuuauaaauu uuauuacaaa aaac-----u 8281 uuauuuuagu auaauuuaaa guaauaauua auuuuaauua auuaacauuc uaaauuuuuc 8341 uuucuaauca uuaauuuuau a--------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------caa 8461 cc(aguga-a g)gguugcgc a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GA|GU (U|CAAUG)G CGAUAAG-CA 8761 U-GC-UUAAC UGAAA-GAC( -cuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AUAUGG GA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAA~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.macro 10775 bp RNA RNA 27-MAR-1996 DEFINITION Mitochondria Allomyces macrogynus; . ACCESSION U41288 KEYWORDS . SOURCE Mitochondria Allomyces macrogynus. ORGANISM Mitochondria Allomyces macrogynus. REFERENCE 1 (bases 20975 to 22690) AUTHORS Paquin,B., Laforest,M.J. and Lang,B.F. TITLE Interspecific transfer of mitochondrial genes in fungi and JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (25), 11807-11810 (1994) STANDARD No information REFERENCE 2 (bases 15012 to 19727) AUTHORS Paquin,B., Roewer,I., Wang,Z. and Lang,B.F. TITLE A robust fungal phylogeny using the mitochondrially encoded nad5 protein sequence JOURNAL Can. J. Bot. 73, S180-S185 (1995) STANDARD No information REFERENCE 3 (bases 20975 to 22690) AUTHORS Paquin,B., O'Kelly,C.J. and Lang,B.F. TITLE Intron-encoded open reading frame of the GIY-YIG subclass in a plastid gene JOURNAL Curr. Genet. 28 (1), 97-99 (1995) STANDARD No information REFERENCE 4 (bases 30388 to 40110) AUTHORS Paquin,B., Forget,L., Roewer,I. and Lang,B.F. TITLE Molecular phylogeny of Allomyces macrogynus: congruency between nuclear ribosomal RNA- and mitochondrial protein-based trees JOURNAL J. Mol. Evol. 41 (5), 657-665 (1995) STANDARD No information REFERENCE 5 (bases 1 to 57473) AUTHORS Paquin,B. and Lang,B.F. TITLE The mitochondrial DNA of Allomyces macrogynus: the complete genomic sequence from an ancestral fungus JOURNAL J. Mol. Biol. 255 (5), 688-701 (1996) STANDARD No information REFERENCE 6 (bases 1 to 57473) AUTHORS Paquin,B., Laforest,M-J. and Lang,B.F. TITLE 80 conserved, palindromic sequence elements in the mitochondrial DNA of Allomyces sp.: Evidence for mobility JOURNAL Unpublished STANDARD No information REFERENCE 7 (bases 1 to 57473) AUTHORS Lang,B.F. TITLE Direct Submission JOURNAL Submitted (24-NOV-1995) Franz Lang, Departement de Biochimie, Universite de Montreal, 2900 Edouard-Montpetit, Montreal, Quebec H3T 1J4, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U41288 Allomyces macrogynus (chytridiomycete) mitochondrial LSU rRNA B. Paquin & B.F. Lang, J. Mol. Biol., in press Gray January 1996 NCBI gi: 1236403 BASE COUNT 1017 a 542 c 754 g 849 t 7613 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ aacauacc-a agga------ ---------- ---------- ---------- 241 ---------- ---------- ---------- ----gUAAAG GACUAAUUG- ----AGGAUG 301 |ACU--AGU| CAU-UCUA-U A|au------ ---------- -----UGGA| -agca(-cga 361 auga-----) g|gcu-aaa- aGAAUGA|u- --agu----- ---------- ---------- 421 ---------- ---au----g UUGUUCG-AU UCCAA-A-GG U--------- -----(GAAA 481 )ACC|----- ---------- ---------- aaaga----- ---------- (cggag-aau 541 )--------- -----ucuu- ---<----au ggaguccugu cuauuu---- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uuauUAAC |CCUGUGAAU 841 UGA(AACA)U CUUAGUA--- -ACAGG---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA CC)GA-G-AU |UUUaACGA- -GUAG-U(-G GCGA)GCGAA -AGUAAAug- 961 -AAaaca<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------u 1081 ucauguuuug auccgaaaua ucuuaucgau guuucgauuu uuucaaagac cccguaccgg 1141 gucuuggggc augucugaaa uugaacauca cacacuuacc caugauaaag gagaugguuu 1201 ggaucuucga uucuaccauu uucaggcagu g--uguuua< u--------- ---------- 1261 ---------- ---------- ---------> (ggaa--)ug ggug------ GC-|C(AAA) 1321 G--AAGG(UG AAAGU)CCUg ua--aauuuc aguaguagac cacuuaugg- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ----AGUAGA ACGA--(--- ---------- 1561 ----auu)-- UUGUUCAGAA ---gaaAGGG G(UACCA-U) -CCUCUAaua aaUUA-AAUA 1621 ---UGAUAGA A-UGAACGAU AGUG-AA--- --GAGUACC( -GUGA-)GGG ---AAA-GU- 1681 UG-------- ----aaaagu a------ccu cu-------- ---------- aaga------ 1741 GAACGAAGCC U(-uccg--) AGGCuucgaa uaucaaugcc ggagg-GGUG AA--AUAGA- 1801 UCCUG-AAUC AGUUaAGU-C U-<------- ---------- ---------- ---------- 1861 ----->AAAA GCAGUUUGAG CCA-----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---agauua 2041 --)-----UG GUGAAGAC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUUGGAG CAAg-agaac aaaagaacgu auc------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------uuu gguacguugg u-gauc-u-a 2521 agu-(-gaaa )--ac-aaaa gaacaaagug agacuuaguc uuaccccuau acauaauuuu 2581 gc-------- ---------- ---------- ---------- ---------- ---------- 2641 ------acuc agugugauug augaucuggg ug-uucu--- gu----gaaG UUCCA-GAAA 2701 UUA-GACCCG AA-ACCAA-G UG-AUCUAUC CAU-GGC-CA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----guaag) ---------- 2821 --ACCGAA-C GG-GUGAUC( GUAGUAA-U) GCUC-UCCGA --UGAGCUU- UGGAUAG-cC 2881 GU(G-AAAU) GCG-AAUC-G A-ACUUGGAA AUAGCU-GGU AUACC--GCG AA-AAC-UAU 2941 (-UGAA)GUA GA-AC-GCUA AACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- uac|-AAACG 3061 A|GGGUAC|A GCACUGG--A A--------- --------(g aaaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ----UU--CU AAACUGGA-- AAUA|-UCGU -U-G---acu ucauaugagu ccugagaccc 3361 cccuccgggg ggguuuacau uuu------- ---------- ---------- ---------- 3421 ---------- ---------- -uag--GU-U -UAGU-AGUC AGAUU--AU- CU-GU(-GAU 3481 AAG)GUAGUU AA-UC----A AAAGGG(AAA -CAG)CCC-A GACCA-A-AA -GU-UAA--- 3541 --GGU-CUCA -AAU-GA-U- UACUAAGUG- --------aa auuaaCCG-- Aaaacaaag| 3601 cgacaagccc gaaaaaaauc acauagauau auaucuucau guggguagag ggaaaugaug 3661 guuuuacuau caugagucg| AGACA-AUCA C<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uUUGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCAA|U(U- AG)A|GAAAG C(--GUUACA )GC|-UCAA- UGAUCGAUU-UU-G -UU-UCU|-C GGGAAAAU-- ---------- ---------- ----GUAUCG 3961 GGUCAgacuc uuaucggccu caguaaccga auugaaaaga guugggggua uaccuuuggu 4021 ggcucugccc cuuuAAGUAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACU| U--U-GG|ca agcaugaugu gagacauggu aacgugacuu 4141 au-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------c auuaugu-uu -g-----GGU AGCGG-UA|- CA-UUCAAUu g--auggagu 4501 g--------a aGGGA-AAAC (gaga---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GU UUU--UCU-G G|aaugg--| AUUUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACUA-AAA- agg-a----- (aaaaaaa-- ---------- ---------- 4741 ---------- -----)---- -uccuu|CCC C-UAAA-AUU CAA--GGGUA -|----aaaa 4801 a--------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ----uaau-- -CGGUUUCUA A-G-U-C--- gagACA-(-C AAC------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--UGU-g-u uu---G-ACG AU-GAAGAgg aacgaa(--- ---------- ---------- 5041 ---------u cugau----- -)uucguucu |g----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------a uuuaua---- -ACCGUA|CC 6481 -----UUCC- -(AACGCU)G G|AGAAU-GA GCUG(GUA-A A-----)CAG UGAAGGGGA| 6541 |--AUGGG-A G--AACCAUC -UUGA-AGGA ACUAGGCAAA AUGACU-CUG UAAC(UUCG- 6601 )GGAGAA-GG AGG|agaaga augaaaguga c----(--au ug)------- ---------- 6661 ---------- ---------- ---------- ---------- -gucauu[ga aagagaagau 6721 ac(uuc)gua ucuu|gucca aacccc(g-- ---------- --uu)ggggu uucgau]uuc 6781 uucu|-(--a )aa-aaaaUA GAGAGGGG|C AA---CUG-U UU(ACUAA)A AA-CACA-GG 6841 AGUCAG|CA- -ACCCC---- ---------- (--GUAA--- ------)--- ---------- 6901 GGGUUAGUA- UUG-GCUCUG AAGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G UC-CG-GU|G CAAGUA-AGU GAAagauga- 7021 --aagaa--- (ag[agauga aggaccccgg ccc(gaa)gg gccgggggac uugauccaaa 7081 aaguccgccc c(uuc)gggg cguuccuuuu u]cga)---u uuuu--uucu cauaacCU-| 7141 CU-UGUA-AA C-|GA-C|-G -GCCUU-(AA CCAUA)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-A |GGCUAA(-U AAUU-)GUAG UC|CU-GCAU GAAUGGCGUA A-UGAUCCCU 7261 CU-------- ---------- -------ACU UUCUACAAGA UGGA-CC-CA ----GUGAAA 7321 UU|G|AAUUA UC-CG(U-GC AGAUG)CGGA UUA----CCA UUAGCCAGAC GAGAAG-ACC 7381 CUAUGA-|-A GCUUU--ACU GG|--A-AUU AAA--CUUU| <--------- ---------- 7441 ---------- ---------- --->guuuc- gu-----ugg -ugaacug-- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- --------aa u--------- -------gua 7681 aaacuugguc uuuuucu|u- -----cauu- c-a-c-cgau aaua-c---- ---------- 7741 -ggaa(-auu aug-)uucc- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- --------uu uaAGU-U-UA -AGU-GA-CA GUUUAACUG( 8161 GGG)AG-GU- U|UCCUGC(- --------UA AAUAGUAAC- )GAAG-GA|G |U|ACAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAU 8401 -AA|--uug- AAGUCA<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (cucuguaau )----UGACU UG[aagaaag g(ucauau)c 8701 cuuuc|accc gauu(ccugu )aaucggguu uaa]auu|GU (G|CAAUG)G CAU-AAA-UA 8761 U-GC-UUGAC UGUAA-GAC( -uauuacuc- )GUCGA-ACA G--------- ---------- 8821 ---------- --------GG AG-------- ---(GUAA-- -)-------- ----CUC-GG 8881 U|---CAUAG UGAUC-CCCA AA-U------ ---------- UCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAUGG AA)AG|GUUU 9001 GGGCUCAAC- |GGAUAAAAG CUACUC|UAG G|GAUAACAG |G-CUG-A-U CAUUCUUUAG 9061 AG(U--UCCU )AUCGACGGA --AUGGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCGC| 9121 AU-CC-UGGG GG-UG(--AA -GA)AGCUCC CAAG-GGU|U GGAC(UGUUC )GUCCA-UUA 9181 A--AGCGGU- -+ACGUGAGC UGGGUUUAGA AC|GA-U(GU AA)AUCAGUU CGGACUCUAU 9241 CU|ACUAA-U GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAGAA-GGA AG-UgacAAG AAU-AGA-AU CC--(UAGU- AC(-GCAA)G GAAU-)GGAU 9361 U--GU-<--- ---------- ---------- -------->G UGAACCU-CU AGUGUACCUG 9421 U|-uga---- ------- 9541 ----ucaUCG CAGG--GUAG CCAC-GUUCA UAA------- ---------- -------aaa 9601 ---------- -AUAAGAGUU (GAAAGC--A UCUAA)A-AC -UC-GAAGUU ga-UCUU--- 9661 gaaAC--U-- -UCUUU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -aaaaca|CG 9961 CUA(GAGACU A--)UAGCGa ---------- ---------- ---------- ------AAUA 10021 G|GUcauaag ---------- ---------- ---------- ---------- ---------- 10081 ---------- --uaugauaA CCC------- ---------- --------(- ---------- 10141 ---------- -------GAG A)GGGU---- ---------- ---------- ---------- 10201 -----cggcu g|a|augAUA CUAau----- ---------- ---------- -----aguua 10261 uuua------ ---------- ---------- ---------- ---------- ---uccuugg 10321 uauguu--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (4)-METAZO 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (5)-EUMETA 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (6)-BILATE 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (7)-COELOM 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (8)-DEUTER 10775 bp RNA RNA 09-JAN-1999 DEFINITION DEUTEROSTOMIA. ACCESSION No information KEYWORDS No information. SOURCE DEUTEROSTOMIA. ORGANISM DEUTEROSTOMIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (9)-CHORDA 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.stolo 10775 bp RNA RNA 11-JAN-191 DEFINITION Pyura stolonifera. ACCESSION No information KEYWORDS No information. SOURCE Pyura stolonifera. ORGANISM Pyura stolonifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X74513 ID MIPS16SRA standard; DNA; ORG; 1556 BP. XX AC X74513; XX DT 25-SEP-1993 (Rel. 37, Created) DT 25-SEP-1993 (Rel. 37, Last updated, Version 2) XX DE P.stolonifera mitochondrial 16S ribosmal RNA gene XX KW 16S ribosomal RNA. XX OS Pyura stolonifera OC Eukaryota; Animalia; Metazoa; Chordata; Tunicata; Ascidiacea; OC Stolidobranchia; Pyuridae. XX OG Mitochondrion XX RN [1] RA Crafford T., Durrheim G.A., Corfield V.A.; RT "Sequence of the Mitochondrial tRNAHis gene from the Tunicate RT Pyura stolonifera"; RL Unpublished. XX RN [2] RP 1-1556 RA Crafford T.T.; RT ; RL Submitted (13-SEP-1993) on tape to the EMBL Data Library by: RL T.T. Crafford, Centre for Molecular & Cellular Biology, University RL of Stellenbosch Med. School, Tygerberg, 7505, SOUTH AFRICA XX FH Key Location/Qualifiers FH FT source 1..1556 FT /organism="Pyura stolonifera" FT /mitochondrion XX SQ Sequence 1556 BP; 511 A; 136 C; 304 G; 605 T; 0 other; BASE COUNT 511 a 136 c 304 g 605 t 9219 others ORIGIN 1 |cuuguuauu uugcugauga uccucguuau auauuauaua gau--aguau u-uuguguau 61 guccguuuau aagcuguuug aaacguuuuu gauaaaauuu caggucgcca ugcuuauauc 121 uaugaauuua ugaguuacag uauauuuucu auaaaaaucu gaauugagau auuuugugaa 181 uuaggacuua uuaga----- ---------- ----uaaaaa gaggaaauua uucuguuuug 241 a--------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----gaaa 841 uaa(uucu)u u--------- ---------- ---------- ---------- ------aaua 901 ugag------ ---------- |----uaGA- -GUAU-U(-- GGGA)AAGAA -gu------- 961 ------------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ------uaau auug-uugu- ----GUAAA( -GUUA-)UUC ---UAUA--- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- -aua------ ---------- ---------- 1861 -gaag>uuag guuauauuu- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----auuug 2041 --)------- --aaaugu-U UGCCUU(UU- GUAUA)AUGA |AUU-GACGA GU--g--uua 2101 uag------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------uuu gguu->---- ---------- ---------- ---------- ------ua-a 2701 uaa-auCUCG AA-AAACU-U UGauuuaguu uga-uu---- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ----guuug) ---------- 2821 ---------- -u-u-UCUU( GUUGAAA-U) AAGA-aag-- ---uaaagu- caaguua-gG 2881 GU(G-AAAC) ACU-AGUC-A G-AUGGUUAG AUAUCU-AGU UUUUG--UUG GA-GGG-UCU 2941 (-auu-)AUG UU-ag----- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ------AUUA CAGGA--UG- AA-GG(-GUC 3481 -AG)CUUUCA UC-CU----- uuaag--aau -uaaguauuu ugguuaaguu auuaaauuua 3541 uuuuauuugu aau------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- -------(-- --)------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------uuu aaggg-ag|u gc-uuuug-- ---------- 4501 ---------- ---------- (gaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| --caaaugau uuAAUGU-UA 4681 AC|UCGAGUA -CUAA-uu-- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- ---------- ----(----- ------)--- -----uugu| 6541 |---uuu--U u--aaaaUUA -AAUC-AGGA AUUCGACAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a aaAUAGCU|C GU---AUG-U UU(AAUAA)A GA-CAUA-GU 6841 UUAUUG|A-- ---------- ---------- (--guc---- ------)--- ---------- 6901 ------UUA- UAA-UAAAUC AGAUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G U--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a agu)------ ---------- ---------| 7141 ----AUA-AA U-|AG-C|-G -GGG---(G- --UUU)--UC UU|U(UAA)- AG-UAGCGUA 7201 AUA-AU-U-U |GUCUAU(-U AAUU-)GUAG AC|UA-GU-- GAAAGAUUAG C-CG-GGUUA 7261 Ug-------- ---------- -------auu uUCUUGUUUA Aaa-----gu ----ag-uaa 7321 au|u|uuuuU UA-AG(UCGA AAAUA)CUUA AAU----AUU CAAAAAAGAA AAAAAGCACC 7381 CUA-GG-|-U GGUUA--AAA UU|-aa--gu guauguua-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- -------uug 7561 ug-u------ ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---u ggaau-a-ua -uug--A-GG UUUAAGUUG( 8161 GGG)UA-AC- U|AUUAGA(- --------aa uau--aauu- )UCUA-AU|g |u|uuu--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ------uag- -a-------- ----cu--ag 8881 a|---gc--- ---uu-aguu uu-u------ ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u ga)--|agaa 9001 gcuuuuuac- |uau-agAAC CAACCC|UAG G|GAUAACAG |C-GCA-A-U UAACUAUAUA 9061 AG(U--UCAU )AUUUAuUAG --UUAGGUUA CG-ACCUCGA UGUC|GG--C U|U-AGAUA| 9121 UU-CU-AUUA AG-CG(--CA -GA)AGCUUA AUGG-GUU|U UGUU(UGUUC )UCCAA-GUA 9181 ---GAAUCU- --ACGUGAGU UGGGUUUAGA AC|GA-G(GU GA)CUUAGUU UAGAUUUUUU 9241 CU|UUUau-- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- --a-uua-ua gu--(UAGU- AC(-GAAA)G GAAU-)ucua 9361 u--ua-<--- ---------- ---------- -------->a aauuu----- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----uga-> 9541 ---------- ---------- -----aaguu gauaaaaacc augg~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (10)-CEPHA 10775 bp RNA RNA 09-JAN-1999 DEFINITION CEPHALOCHORDATA. ACCESSION No information KEYWORDS No information. SOURCE CEPHALOCHORDATA. ORGANISM CEPHALOCHORDATA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.B.lance 10775 bp RNA RNA 03-JUL-1998 DEFINITION Mitochondrion Branchiostoma lanceolatum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION Y16474 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Branchiostoma lanceolatum. ORGANISM Mitochondrion Branchiostoma lanceolatum. REFERENCE 1 (bases 1 to 15076) AUTHORS Spruyt,N., Delarbre,C., Gachelin,G. and Laudet,V. TITLE mitochondrial genome : relations to vertebrates Complete sequence of the amphioxus (Branchiostoma lanceolatum) JOURNAL Nucleic Acids Res. 26, 3279-3285 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15076) AUTHORS Laudet,V. TITLE Direct Submission JOURNAL Submitted (11-FEB-1998) V. Laudet, Ecole Normale Superieure de Lyon, CNRS UMR 49, 46 Allee d'Italie, 69364 Lyon Cedex 07, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y16474 Related sequence: Y09524. BASE COUNT 439 a 196 c 288 g 444 t 9408 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~uaac cCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-guaaacuc 2041 --)------- -----uau-u uuCCUU(UU- GCAUA)AUGA |uuu-aauua gggcacuug- 2101 cuagcguu-- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -aauu>---- --(------) ---------- ---------- --agu-guua 2701 gua-AUCCCG AA-ACUAA-A CG-AUUUAUU CUA-GUC-CU AGUA------ ---------- 2761 -(-------- ---------- ---------- ---------- --aauuaau) ---------- 2821 -GACUUAA-C UA-AUCUAU( GUUGCAA-U) AUAG-UUAGA --UGAGGCU- AGAAUGG-GG 2881 GU(G-ACAU) GCU-AAUC-G C-GUUUAGUU CUAGCU-GGU UAUUC--AAG AA-AUG-AAU 2941 (-AAGA)GUU CA-gc-uuug ua----AGU-U GGC(UUAAAA 3781 GC-A)-GCCA -ucuu|g(u- aa)u|AACAG C(--GUUAUA )GC|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---u--uga| a--u-aa|-- --------cu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cuu auaga-au|- uu-uaugu-- ---------- 4501 ---------- ---------- (uaaa---)< -augcguagg uu-------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aacuaacuc uuaacac-ag 4681 au|GUAAGUA -AUUU-UAC- u--------- (-cuuug--- ---------- ---------- 4741 ---------- -----)---- ------|uau u-uu---guu cug-gauaaa g--------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---aauuaa- ---ug----- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 --ugaagcu- -(-a-aca)g g|agagu--- ----(gua-- ------)--- ----auuga| 6541 |----guu-a cauaauUAGG -GGGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c agGAAGCU|C GC---CUG-U UU(AACAA)A AA-CAUC-GC 6841 CUUUAG|--- ---------- ---------- (-acua---- ------)--- ---------- 6901 ------AUA- UUA-AAGGUC UGGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G -U-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auu)------ ---------- ---------| 7141 ---A-UU-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GCCCUU(-U AAAU-)GGGG GA|AU-GUAU GAAUGAUUAG A-CGAGGUUU 7261 CG-------- ---------- -------ACU GUCUUCCCCC UAAA-AA-C- -----ugaga 7321 uu|u|cagUG UC-UG(U-GA AAAUG)CGGG CAU----GGC UGUAAUGGAC GAGAAG-ACC 7381 CUGUUG-|-A GCUUG--AAG Ac|--uacau au---ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --auu-a-aa -cg---G-UC UUUUGGCUG( 8161 GGG)UG-GC- A|AGCAAA(- --------GG AAUUA-AGC- )UUUG-AU|A |U|uaa--|< 8221 auuuacau-- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- uuuua-ggc( uguuuau--- )gccaa-gga auau------ ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|---au-ac aGAUC-CGC- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uaa ga)--|---- 9001 GCGAUUAAU- |AGA-UAAAG UUACCA|CAG G|GAUAACAG |C-GUA-A-U CCUUUUUGAG 9061 AG(C--CCAU )AUUGACAAA --AGGGUUUG CG-ACCUCGA UGUU|GG--A U|C|AAGAU| 9121 -U-CC-UAAU GG-UG(--UA -GC)AGCUAU UAUG-GGU|U UGCC(UGUUC )GGCGA-UUA 9181 A--AAUCUU- --ACGUGAUC UGAGUACAGA CC|GU-C(GU AA)GACAGGU UAGAUUCUAU 9241 CC|UUA---- --|-|<---- ---------- ---------- ---------- -----cauu- 9301 >--------- ---------- --c-aca-ua uu--(UAGU- AC(-GAAA)G GACC-)aaug 9361 ---gu-<--- ---------- ---------- -------->g uguaauu--u uaag------ 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---guuuu-> 9541 ---------- --------uu uaaa-uuaua ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (10)-VERTE 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.N.cryso 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Notemigonus crysoleucas.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Notemigonus crysoleucas. ORGANISM Mitochondrion Notemigonus crysoleucas. REFERENCE 1 (bases 1 to 1758) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1758) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038487 BASE COUNT 584 a 384 c 367 g 370 t 9070 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |ugc-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaacuu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G U-CCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- --uuu-guuu 2701 gac-gcCCCg AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guuaaucua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UAuu<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< accccaaacc 3121 aaag-----a acauaucacu aagguaauu- ---------- ---------- ---------- 3181 ----agagau ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUA|-(a- ac)a|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaaaaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-GC|- CA-GCCCAUG ---------- 4501 ---------- ---------- -ccaa----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--g cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gugaauaaua uuagaccuca ggaaaaacuc 5761 acaucugaau aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---uAACCC- -(UACACU)G G|CGUGC--- -----uacuu uaag------ -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuggauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UUU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaagu uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-acacaaa aagcaagaac uuaguggcga g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAAAGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- uccca----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -auacau--- )cuaua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|--ag 9001 gc-AUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cua aaaccccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(gaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (11)-AGNAT 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.marin 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyzon marinus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyzon marinus. ORGANISM Mitochondrion Petromyzon marinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U11880 LOCUS PMU11880 16201 bp DNA Circular VRT 25-JUL-1994 DEFINITION Petromyzon marinus mitochondrion, complete genome. ACCESSION U11880 KEYWORDS . SOURCE sea lamprey ORGANISM Mitochondrion Petromyzon marinus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Petromyzontiformes; Petromyzontidae; Petromyzon. REFERENCE 1 (bases 1 to 16201) AUTHORS Lee,W.-J. and Kocher,T.D. TITLE Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: A unique gene order and significance for the evolution of mitochondrial genome structure JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 16201) AUTHORS Lee,W.-J. TITLE Direct Submission JOURNAL Submitted (06-JUL-1994) Woo-Jai Lee, Zoology, University of New Hampshire, Spaulding Life Science Building, Durham, NH 03824, USA STANDARD full automatic COMMENT NCBI gi: 515484 FEATURES Location/Qualifiers tRNA complement(1195..1265) /product="tRNA-Pro" /anticodon=(pos:1231..1233,aa:Pro) tRNA 1276..1343 /product="tRNA-Phe" /anticodon=(pos:1309..1311,aa:Phe) rRNA 1344..2243 /product="12S ribosomal RNA" tRNA 2244..2314 /product="tRNA-Val" /anticodon=(pos:2276..2278,aa:Val) rRNA 2315..3935 /product="16S ribosomal RNA" tRNA 3936..4009 /product="tRNA-Leu" /anticodon=(pos:3971..3973,aa:Leu) /note="UUR" tRNA 5003..5071 /product="tRNA-Ile" /anticodon=(pos:5033..5035,aa:Ile) tRNA complement(5074..5144) /product="tRNA-Gln" /anticodon=(pos:5110..5112,aa:Gln) tRNA 5145..5212 /product="tRNA-Met" /anticodon=(pos:5176..5178,aa:Met) tRNA 6256..6323 /product="tRNA-Trp" /anticodon=(pos:6285..6287,aa:Trp) tRNA complement(6325..6393) /product="tRNA-Ala" /anticodon=(pos:6334..6336,aa:Ala) tRNA complement(6397..6465) /product="tRNA-Asn" /anticodon=(pos:6434..6436,aa:Asn) tRNA complement(6467..6532) /product="tRNA-Cys" /anticodon=(pos:6502..6504,aa:Cys) tRNA complement(6538..6608) /product="tRNA-Tyr" /anticodon=(pos:6574..6576,aa:Tyr) tRNA complement(8154..8224) /product="tRNA-Ser" /anticodon=(pos:8189..8191,aa:Ser) /note="UCN" tRNA 8226..8294 /product="tRNA-Asp" /anticodon=(pos:8256..8258,aa:Asp) tRNA 8996..9061 /product="tRNA-Lys" /anticodon=(pos:9024..9026,aa:Lys) tRNA 10695..10764 /product="tRNA-Gly" /anticodon=(pos:10725..10727,aa:Gly) tRNA 11120..11185 /product="tRNA-Arg" /anticodon=(pos:11150..11152,aa:Arg) tRNA 12856..12924 /product="tRNA-His" /anticodon=(pos:12886..12888,aa:His) tRNA 12925..12994 /product="tRNA-Ser" /anticodon=(pos:12952..12954,aa:Ser) /note="AGY" tRNA 12995..13066 /product="tRNA-Leu" /anticodon=(pos:13028..13030,aa:Leu) /note="CUN" D-loop 15368..15858 tRNA 15859..15930 /product="tRNA-Thr" /anticodon=(pos:15891..15893,aa:Thr) tRNA complement(15932..16002) /product="tRNA-Glu" /anticodon=(pos:15968..15970,aa:Glu) repeat_region 16003..16201 source 1..16201 /organism="Petromyzon marinus" /dev_stage="adult" /mitochondrion CDS 1..1191 /note="NCBI gi: 515485" /product="cytochrome b" /codon_start=1 /translation="MSHQPSIIRKTHPLLSLGNSMLVDLPSPANISAWWNFGSLLSLC LILQIITGLILAMHYTANTELAFSSVMHICRDVNNGWLMRNLHANGASMFFICIYAHI GRGIYYGSYLYKETWNVGVILFALTAATAFVGYVLPWGQMSFWGATVITNLISAMPYV GNDIVVWLWGGFSVSNATLTRFFTFHFILPFILAAMTMIHIMFLHQTGSSNPMGINSN LDKIQFHPYFSFKDILGFVILLGILFMISLLAPNALGEPDNFIYANPLSTPPHIKPEW YFLFAYAILRSVPNKLGGVVALAAAIMILLIIPFTHTSKQRGMQFRPLAQITFWILIA DLALLTWLGGEPAEYPFILMTQIASTVYFMIFILVFPILGYLENKMLLMSKNTGKFNW KLVY" CDS 4014..4979 /note="NCBI gi: 515486" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLIMLTSTLILVLMVLLAVAFLTMVERKTLGYMQLRKGPNVVGF MGLLQPIADGVKLFLKEPVWPLAASPILFIVAPIMALTLALSLWMLIPMPQSISTINI TLLVIMAISSLSVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLCLVILTG SFSLQAFIYTQEHTWFLLSSWPLAAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYA GGPFALFFLAEYSNILFMNTLTAIMFLGPLGSNNLNILPIINIMMKATPLIILFLWIR ASYPRFRYDQLMHLMWKNFLPLNLALFTLQLSLAVSFGGAGVPQM" CDS 5214..6257 /note="NCBI gi: 515487" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MLSPLIQSTLLMTLGLGTLVTFSSTSWILAWIGLEINTIAIIPL MAKTHHPRSIEATTKYFIAQSAGSATLLITACLTAWYSGNWAISPSNDPIILNAMTLA LMLKLGMAPMHFWLPEVMVGLDFITGMILATWQKLAPITLLIQIAQDQNNMFILIPAL LSVFVGGWGGLNQTQTRKILAYSSIAHMGWITSMAPFNPTITWLTTLIYCLITSATFI NLHILKANKITALTMNKHNQISQMLLLLLLLSLGGLPPLTGFINKLLASIELANQNLI IYLFMMMMGSLLSLFFYTRMCYLSIILSPPCSTTNLILWRVVSNKPMTLITMLSTNLF IMTPQLLAVFTLH" CDS 6610..8163 /note="GTG start codon. NCBI gi: 515488." /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MTHIRWLFSTNHKDIGTLYLIFGAWAGMVGTALSILIRAELSQP GTLLGDDQIFNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSF WLLPPSLLLLLASAGVEAGAGTGWTVYPPLAGNLAHTGASVDLTIFSLHLAGVSSILG AVNFITTIFNMKPPTMTQYQTPLFVWSVLITAVLLLLSLPVLAAAITMLLTDRNLNTS FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGKIVW HTPMLWALGFIFLFTVGGLTGIVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGYTLNETWAKAHFIIMFAGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTW NIISSIGSTVSLIAVMLFMFILWEAFSAKRKAIATDLLNTNLEWLHGCPPPYHTYEEP AFVQTNFKK" CDS 8298..8987 /note="NCBI gi: 515489" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAQQAQLGLQDAASPIMEELIHFHDHTLTVVFLISVLIFYLIIV MVTTTFMNKHSLDSQEVEIVWTVMPAIVLITIALPSLRILYLTDEISNPHLTIKAVGH QWYWSYEYTDYHQMEFDSYMIPTNELEPGGIRLLDVDHRIVVPMESPVRMLITSEDVI HSWTIPSLGTKVDAVPGRLNQATFITTRPGLFFGQCSEICGANHSFMPIALEAVPLSN FENWTTKVLAS" CDS 9064..9231 /note="NCBI gi: 515490" /product="ATPase 8" /codon_start=1 /translation="MPQLDPAPWFSMLTVSWLIIFLLIMPTILFYQPQNTISTKQVTK PKQSTWTWPWH" CDS 9222..9935 /note="NCBI gi: 515491" /product="ATPase 6" /codon_start=1 /translation="MTLDIFDQFTSPTMFGLPLAWLAMLAPSLMLVSQTPKFIKSRYH TLLTPILTSIAKQLFLPMNQQGHKWALICMASMMFILMINLLGLLPYTYTPTTQLSMN MGLAVPLWLATVLIGLQKKPTEALAHLLPEGTPAALIPMLIIIETISLFIRPIALGVR LTANLTAGHLLMQLVSMTTFVMIPVISISIITSLLLLLLTILELAVAVIQAYVFILLL TLYLQENVYVPPSSCMPHG" CDS 9901..10686 /note="NCBI gi: 515492" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MSHQAHAYHMVDPSPWPLTGAGAALLMTSGLAMWFHKNSCILMT LGLILMLLTMYQWWRDIVREGTFLGHHTSPVQQGLRYGMILFIISEVCFFAGFFWAFY HASLAPTPELGLTWPPTGINPLNPFEVPLLNTAVLLASGVSVTWAHHSITEKNRTETT QALTLTVLLGLYFTALQIMEYYETPFTMADGVYGSTFFVATGFHGLHVIIGSLFLLTC LLRHLQYHFTSKHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS" CDS 10765..11115 /note="NCBI gi: 515493" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNSFMVMIMLTLTLSSIMALLAFWLPIMKPDSEKLSPYECGFDP QGSARLPFSLRFFLVAILFLLFDLEIALLLPSPWATNISNPEFTLLWASLFVLLLTLG LIYEWLQGGLDWAE" CDS 11194..11484 /note="NCBI gi: 515494" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MPTTLIFTSFFLALLGLSLQRKHLLSLLLTLESMALALYVSTAL WALNNTSLPIMAAPLIILTFSACEAGMGLSLMIATARTHNTDQLKALNLLKC" CDS 11478..12854 /note="NCBI gi: 515495" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKLIIPSIMLIPMTFLINKKSLLWTATTFFSFLIAALSTLTLN MDVAEHNSTNPLLSIDQFSCPLIMLSCWLLPLTIMGSQAHMKTEPITRQKTMISLLIL LQVLLCITFGASNLLMFYIAFETTLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLP LLLALIMIQTHLNSLSIYIIPLSNLTLLLNTPWSETLWWIACFLAFLIKMPLYIFHLW LPKAHVEAPIAGSMILAAILLKLGGYGMIRMSSLFIPLTKDLAVPFMIIAMWGMIVTS SICLRQTDLKSMIAYSSVSHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLLCLAN ITYERTHTRSIFMNRGLKTLFPLMSFWWLMMTFANMALPPFPNFMAEILIITSLFNWS NWTILLLGLSMTLTALFSLNMLIMTQHEHPNKHAPVNPSTTREHLLMLMHMAPIILLI ANPSAIMI" CDS 13068..14864 /note="NCBI gi: 515496" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MNSHYLTLIMNSGALLTIIVLLPPIIMPKPSMILTTKLVKISMF ISLIPLTIYLNENMETTLTMKPWMDWALFNIALSFKIDKYTVIFTPIALMITWSIMEF SQWYMAKERHMDKFFKYLLLFLITMITFISANNLLQLFIGWEGVGIMSFLLISWWSGR TKANISALQAVAYNRIGDIGLMMSMVWMCSNTNSWDLQQITMLLSDQQYLIPTLGFLI AATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRLHPLFQNYPLMLEM TLCLGAMTTICAALCATTQNDIKKIIAFSTSSQLGLMMVAVGLNHPHIAFLHMCTHAF FKAMLFLCSGSIIHNMNNEQDIRKFSCLNNNLPLTTTCMTIGSAALMGLPFLAGFFTK DLILEALNTSYTNAWALMVTLMAVTLTTAYSSRLIIMSASGTPRYLPLTPTHENNFIK NPLKRLAWGSLISGLILTSTLPPMKPQIFTMPTYIKTIALMMFIISLIISMELTNKKI NQTTFSFFTQLAFYPHIIHRLTSHLSLIWSQKLMTQVMDVSWLEKIGPKGLANHQLKP STTLTEAHHLNSATLPLMAFALTLITLSLTAR" CDS complement(14849..15367) /note="NCBI gi: 515497" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MLSLVLCFFVMFLLGVAVVVLSPSPYFSALGLVFVAVSGCFIVL YHGGTFLSLVLVLLYLGGMMVVFVYSAALAADPYPEVLGGRVIWFFVICVLCICFAGY MSFNDFFLDVSVACEGADYTGGIFGAEWLGVTTFYEVGLILVLAGWALLVCLFSVLVV VRGVNRGALRAV" BASE COUNT 5227 a 3863 c 2182 g 4929 t ORIGIN BASE COUNT 608 a 337 c 278 g 398 t 9154 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~- ---------- |-----accg 841 cAA(ACCA)U Ugc------- ---------- ---------- ---------- ---------- 901 ---------- ------c-cc |cau-uuUA- -GUAU-A(-G GUGA)UAGAA -Aaaaa---- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --auuauaca caua-aua-- ----GUACC( -GCAA-)GGG ---AAU-AU- 1681 UGaaaaagaa gugaaauaaa uugau----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-CAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |CUU-AGCaa gcaaa--cc- 2101 cg-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 -a-------- ---------- ---------- ---------- ---------- ---------- 2641 ------auau acugc>---- ---------- ---------- ---------- ---------c 2701 gcc-acCCCG AA-ACUAG-A CG-AGCUACC CUG-GGA-UU ACCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auaa-) ---------- 2821 -GGGUUAA-U CC-GUAUCU( GUGGCAA-A) AGAU-UGGAA --AAACCCC- UGGGUAG-AG 2881 GU(G-AAAA) GCC-UACC-G A-GCCUAGUG AUAGCU-GGU UACUU--AAG AA-ACA-AGU 2941 (-UUAA)GCU UG-AU-CUUA ACUu<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< guagaugagc 3121 aaca-----a aauuacuuag aaauuuaaac aucuuacucc ucuaca---- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAG-UUUU AUUCA--CU- AG-GG(-GUA 3481 CAG)CCCUAG UG-AA----- -cAGAG(AUA -CAG)CUC-u auuaa-u-ua -ga-UAA--- 3541 --uau-acca cauuuua-a- acu------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uaaGU-A GGC(CUAAAA 3781 GC-A)-GCCA -Ccaa|g(a- ag)-|AAAAG C(--GUUACA )GC|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- agac--ccu| a--u-aa|-- --------ac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acu aUUAA-GU|- AA-UCCUA-- ---------- 4501 ---------- ---------- (uaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGGAGAU AUCCUGC-UA 4681 AG|AUUAGUA -AUUU-GAG- c--------- (-ccgcaccc c--------- ---------- 4741 ---------- -----)---- ----u-|cua aauguaaGUG Uac-accaga u|----cgga 4801 c-caac--ca c--------- ---------- --)------- -ugga----- ---------- 4861 ---aauuaa- -cggc----- ---------- ---------- ---------- -------<-c 4921 cuuaaaacaa caggaaguca gaaacauaaa caacaacaag aaaaacaaga acuaaua--- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -accg--|-- 6481 --uUAACCC- -(UACACU)G G|AACAU--- ----(aau-- ------)--- ----auaga| 6541 |---AGAU-A U--AAAGGAU -AAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAUGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|--- ---------- ---------- (auaaaaauc aa----)--- ---------- 6901 ------GUA- UUG-GAGGCA AGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aau)------ ---------- ---------| 7141 ---AUUG-AA U-|GG-C|-C -GCGGU-(AC -UUUG)ACCG UG|U(AAA)- AG-UAGCGUA 7201 AUC-AC-U-U |GUCUUG(-U AAAU-)UAAG AC|UG-GAAU GAAAGGUUAC A-CGAGGGCA 7261 UA-------- ---------- -------ACU GUCUCCUUAU CCCU-AU-CA ----AUGAAA 7321 UU|G|ACCUA CC-CG(U-GC AAAGG)CGGG UAU----AAA CCCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUC-cAAA CA|--u-uua ca---uc--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --cga-u-gu -ac---A-GU UUUAGGUUG( 8161 GGG)CA-AC- C|ACGGAA(- --------CA AAAGU-AAU- )AUCC-AC|G |a|cga--|< 8221 cgaaaauaua auuuucuaag ccuaga---- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ------acca caacu-cua( --agcac--- )uagua-aaa cua------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------acg 8881 u|---UA-AU AGACC-CAGC ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----aucac uu)--|---G 9001 CUGACUAAC- |GAA-ACAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUUUCCACG 9061 AG(C--CCGA )AUCAACGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|GGGGC| 9121 AC-CC-CAAU GG-CG(--CA -AA)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGCCCC- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----uuugc- 9301 >--------- ---------- --u-guu-uc cc--(UAGU- AC(-GAAA)G GACC-)ggug 9361 aa-ac-<--- ---------- ---------- -------->a agggucu-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---acuuau> 9541 ---------- ---------- gcaa-acccu acaucaau-- ---------- ---------- 9601 ---------- -----ccuau (gaaacc--a acuca)a-ua aga------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 cu-(-agaua ---)-aguuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (11)-GNATH 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (12)-CHOND 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.S.canic 10775 bp RNA RNA 17-SEP-1998 DEFINITION Mitochondrion Scyliorhinus canicula.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y16067 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Scyliorhinus canicula. ORGANISM Mitochondrion Scyliorhinus canicula. REFERENCE 1 (bases 1 to 16697) AUTHORS Delarbre,C., Spruyt,N., Delmarre,C., Gallut,C., Barriel,V., Janvier,P., Laudet,V. and Gachelin,G. TITLE The complete nucleotide sequence of the mitochondrial DNA of the dogfish, scyliorhinus canicula JOURNAL Genetics 150 (1), 331-344 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16697) AUTHORS Gachelin,G. TITLE Direct Submission JOURNAL Submitted (30-DEC-1997) G. Gachelin, Institut Pasteur, Dept. of Immunology, 25 rue du Docteur ROUX, 75015 Paris Cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y16067 Related sequence Y09526. BASE COUNT 595 a 334 c 284 g 460 t 9102 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----cuuaaa 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(AACA)U Ucuuca---- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |ccc-uuaA- -GUAU-G(-G GCGA)CAGAA -caagg---- 961 -------<-- --accuc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGCGCAAU AGCU-UA--- ---UGUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaaaagaa augaaauaaa uaauu----- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUC-G UACCUU(UG- GCAUC)AUGA |UUU-AAUUA GAaaa--ac- 2101 uaggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuaagucu 2701 acc-cuCCCG AA-ACUAA-A CG-AGCUACU CCG-AAG-CA GC-------- ---------- 2761 -(-------- ---------- ---------- ---------- auuau-aga) ---------- 2821 ---GCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUC- CGAGUAG-UG 2881 GU(G-ACAA) GCC-UACC-G A-GUUUAGUG AUAGCU-GGU UACCC--AAG AA-AAG-AAC 2941 (-UUUA)AUU CU-GC-AUUA AUC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuucuac 3121 uaaa-----u aagaaucuuc uuauuaaa-- ---------- ---------- ---------- 3181 ----guuaaa cauaga---- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ga-u -uaau-AGUU AUUUA--GA- AG-AG(-GAA 3481 CAG)CCCUUC UA-AA----- -UUAAG(AUA -CAA)CUU-u uuaag-g-ug -gu-UAA--- 3541 --ugaucaua auuauua-a- g-guuu---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------uuuc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UCAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUG|u(u- aa)-|GUAAG C(--GUCACA )GC|-uCua- guuu--<--- 3841 uu-uaaaaac ccauaauuua gauauuuau- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc aaaa--acc| cc-c-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----aacccu aUUGG-GU|- UA-UUUUAUA u--------- 4501 ---------- ---------- (aaaau--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| UAUAAAAGAA CUUAUGU-UA 4681 AA|AUGAGUA -AUAA-GA-- GG-------- (-auaaacc- ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-ACA CAA--gugua u|----guca 4801 gaaa----ga ---------- ----(-auua aa)u-c|--a cugaua---- ---------- 4861 ---auuaaa- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- --ucccagac ugaggccauc auaacuucau uucuugacua gaaaacccua 5761 ucuuacuau- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(AACACA)G G|AGUGU--- ----(-cuua a-----)--- -----ggaa| 6541 |---AGAU-U A--AAAGAAA -GUAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c auAAACUC|C GC---CUG-U UU(ACCAA)A AA-CACC-GC 6841 CUCUUG|--- ---------- ---------- (-cuuacca- ------)--- ---------- 6901 ---------- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a au-)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CC-GUAU GAAAGGCACC A-CGAGAGUU 7261 UG-------- ---------- -------ACU GUCUCUACUC UCUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CU-CG(U-GC AGAAG)CGAG UAU----GAU AACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAA UA|--c-aua aau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------a uuauguacau auuaauaauc 7561 ccaggacaua aacaaaaaau auaauacuuc ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-u-uu -aac--U-AU UUUUGGUUG( 8161 GGG)UG-AC- C|AAGGGG(- --------AA AAAUGAAUC- )CCCC-UU|A |u|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 aguauuca-- aauac----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 -----uuaaa aguua-gaa( -uuacaa--- )uucua-acc gauaaaaauu uuau------ 8821 ---------- ---------- ---------- ---------- ---------- ---------c 8881 g|---aaaaa UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------auu uu)--|---c 9001 cugAUCAAU- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUUUCAG 9061 AG(U--UCCU )AUCGACAAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|aug---- --|-|<---- ---------- ---------- ---------- -----aauu- 9301 >--------- ---------- -uA-UUU-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAG 9361 A--AA-<--- ---------- ---------- -------->- uggggcc-aa ua-------- 9421 -|-------- (-----) 9541 ---------- ---------- cacg-ccuca uu-------- ---------- -------uuc 9601 ---------- ---aucuauu (gaacca--a acuaa)a-au -ag-auaaga a--------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 --------aa gauuaucuau u----->--| ------(--- )--------- -------|gc 9961 cc-(aagaaa a--)-ggguu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.manaz 10775 bp RNA RNA 12-SEP-1998 DEFINITION Mitochondrion Mustelus manazo.; . ACCESSION AB015962 KEYWORDS . SOURCE Mitochondrion Mustelus manazo. ORGANISM Mitochondrion Mustelus manazo. REFERENCE 1 (sites) AUTHORS Cao,Y., Waddell,P.J., Okada,N. and Hasegawa,M. TITLE The complete mitochondrial DNA sequence of the shark (Mustelus manazo): Evaluating rooting contradictions to living bony vertebrates JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16707) AUTHORS Cao,Y. TITLE Direct Submission JOURNAL Submitted (07-JUL-1998) to the DDBJ/EMBL/GenBank databases. Ying Cao, The Institute of Statistical Mathematics; 4-6-7 Minami-Azabu, Minato-ku, Tokyo 106-8569, Japan (E-mail:cao@ism.ac.jp, Tel: +81-3-5421-8748, Fax: +81-3-5421-8796) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AB015962 BASE COUNT 596 a 336 c 284 g 454 t 9105 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----cuuaaa 301 |acu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(AACA)U Uuuaa----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |ccu-ucuA- -GUAU-G(-G GUGA)CAGAA -caaua---- 961 -------<-- --acuca--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAAU AGCU-UA--- ---UGUACC( -GCAA-)GGA ---AAA-GC- 1681 UGaaaaagaa augaaauaaa ucauu----- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuacac 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCUA GAaaa--ac- 2101 uaggcgaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuaagucu 2701 auc-cuCCCG AA-ACUAA-A CG-AGCUACU CCG-AAG-CA GC-------- ---------- 2761 -(-------- ---------- ---------- ---------- auuauuaga) ---------- 2821 ---GCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUC- CGAGUAG-CG 2881 GU(G-AAAA) GCC-UACC-G A-GUUUAGUG AUAGCU-GGU UACCC--AAG AA-AAG-AAC 2941 (-UUUA)GUU CU-GC-AUUA ACU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuuuacuauc 3121 uaga-----c aagaauuucu cgucaaa--- ---------- ---------- ---------- 3181 ----gaaaac uauaag---- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ag-u -uaau-AGUU AUUUA--GA- AG-AG(-GUA 3481 CAG)CCCUUC UA-AA----- -CUAAG(AUA -CAU)CUU-u uaaag-a-ug -gg-AAA--- 3541 --ugaucaua auuauua-a- g-guuu---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------ccac c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CCAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUG|u(u- aa)-|GUAAG C(--GUCGCA )GC|-ucca- gucu--<--- 3841 aacacuaaac cuauaauuua gauauuuac- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc auaa--ccc| c--c-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----uauccu aUUGG-GU|- UA-UUUUAUA a--------- 4501 ---------- ---------- (aaa----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| UAUAAAAGAA CUUAUGC-UA 4681 AA|AUGAGUA -AUAA-AGA- ga-------- (-acaaauc- ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-ACA UAA--gugua c|----guca 4801 gaaa----ga ---------- ----(-auua aa)u-c|--a cugaca---- ---------- 4861 ---auuaau- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- --ccccagac ugaggucauu auacuauuaa aucauuaacu agaaaaccuu 5761 auucuucuau ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAAUCC- -(CACACA)G G|AAUGU--- ----(-cacc a-----)--- -----ggaa| 6541 |---AGAU-U A--AAAGAAA -AUAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACUC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|--- ---------- ---------- (-uuaaauua ------)--- ---------- 6901 ---------- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a au-)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AU-U-U |GUCUUU(-U AAAU-)GAAG AC|CC-GUAU GAAAGGCACC A-CGAGAGUU 7261 UA-------- ---------- -------ACU GUCUCUAUUU UCUA-AU-CA ----AUGAAA 7321 UU|G|AUCUA UU-CG(U-GC AGAAG)CGAA UAU----AAU AACAUUAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAA CA|--c-uua agu--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------a uuauguaacc auuuauuccu 7561 cagggua-ua aacaaaauau auaauacuuc ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-c-uu -aac--U-GU UUUUGGUUG( 8161 GGG)UG-AC- C|GAGGGG(- --------GA AAACAAAUC- )CCCC-UC|A |u|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------auug 8341 aguacuca-- guacu----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ------ugaa aauca-gaa( -uaacaa--- )uucug-auu aauaaaauau uuau------ 8821 ---------- ---------- ---------- ---------- ---------- ---------c 8881 g|---aaaaa UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uu)--|---c 9001 cugAUCAAU- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUCUCAG 9061 AG(U--UCCU )AUCGAAGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|aug---- --|-|<---- ---------- ---------- ---------- -----aaua- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-<--- ---------- ---------- -------->- uggggcc-aa ug-------- 9421 -|-------- (-----) 9541 ---------- ---------- cacg-cccca uu-------- ---------- -------uuc 9601 ---------- ---aucuauu (gaauaa--a acuua)a-au -ag-auaaga a--------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 --------aa gaucacccac u----->--| ------(--- )--------- -------|gc 9961 cc-(aaaaac a--)-ggguu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (12)-bony 10775 bp RNA RNA 09-JAN-1999 DEFINITION bony vertebrates. ACCESSION No information KEYWORDS No information. SOURCE bony vertebrates. ORGANISM bony vertebrates. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (13)-Actin 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (14)-CHOND 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.ornat 10775 bp RNA RNA 09-NOV-1996 DEFINITION Mitochondria Polypterus ornatipinnis.; . ACCESSION U62532 KEYWORDS . SOURCE Mitochondria Polypterus ornatipinnis. ORGANISM Mitochondria Polypterus ornatipinnis. REFERENCE 1 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE (Polypterus ornatipinnis), a basal ray-finned fish: Ancient establishment of the consensus vertebrate gene order The complete mitochondrial DNA sequence of the bichir JOURNAL Genetics 144 (3), 1165-1180 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (28-JUN-1996) Ecology & Evolution, State University of New York at Stony Brook, 661 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U62532 BASE COUNT 603 a 347 c 315 g 390 t 9120 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----auuaua 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-------aa 841 cAA(AACA)U Uug------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |aac-uucA- -GUAU-A(-G GCGA)UAGAA -agaga---- 961 -------<-- --acaa---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGAGCUAU AGCA-AC--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaaa ucguu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-CAUA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UCU-AGUAA GUaag--cc- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugau->---- --(------) ---------- ---------- -uuauaguuu 2701 gac-ccccCG AA-ACUAG-A CG-AGCUACU UCG-AGG-CA GUU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----gaaag) ---------- 2821 --GACCAC-C CC-GUCUCU( GUGGAAA-A) AGAG-UGGGA --AGACUUC- CAAGUAG-AG 2881 GU(G-ACAA) GCC-UAAC-G A-GCCUAGUG AUAGCU-GGU UACUU--GAG AA-AUG-GAU 2941 (-AAAA)GUC CA-GC-CUCA AAAU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uucuaaaaaa 3121 uaua-----c aaauuccguu uaaaaaa--- ---------- ---------- ---------- 3181 ----uu--uu aag--aa--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -----cAU-U -UGAG-AGUU AUUCA--cA- GG-AG(-GUA 3481 CAG)CUCCUA UG-AA----- -cuGGG(AAA -CAA)CCC-a auaag-g-ag -ga-AAA--- 3541 --agaucaua auuuaca-a- ggacaa---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aauc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->-AAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -CCUU|-(ua -a)a|GAAAG C(--GUUAUA )GC|-UUAa- auaa--<--- 3841 --uauauuau uccguauauc cggauaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucugaaucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- caaau-AU|- CA-AGUUAUU ---------- 4501 ---------- ---------- (cuauuug)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| AGUAGAAGAA AUUAUGC-UA 4681 GA|ACUAGUA -AUAA-GAA- aaa------- (-u-g-auu- ---------- ---------- 4741 ---------- -----)---- ---uuc|ucc u----a-GCA CAA--gugua a|----guua 4801 gaac----gg ---------- ----(--aca aa)c-c|--a cuaaca---- ---------- 4861 ---auuaga- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaacaga gggccaaaua acgccuauaa uaaaaacaag aaaacccuau 5761 uaaucuua-- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---AAAUCU- -(UACACA)A G|AGUGC--- ----(cuaa- ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAGA -AAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u ccGAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUUCAG|C-- ---------- ---------- (--uuuucau ------)--- ---------- 6901 ------GUA- UUG-AAGGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uga)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)GAGG AC|UG-GUAU GAAUGGCCCC A-CGAGGGCU 7261 CA-------- ---------- -------ACU GUCUCuuuuu cuccgGU-CA ----AUUAAA 7321 CU|G|AUCUC CCCUG(U-GC AGAAG)CGGG CAU----AAA GACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUU--AGA CU|--a-aau ccaa---a-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -cacuccuca cuauauuuua 7561 ccgu--aua- -gac--aaac acagcgu--- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- --uau-g-gc caua-aA-GU CUUAGGUUG( 8161 GGG)CG-AC- C|ACUGAG(- --------AA CAAAUAAUC- )CUCA-GC|G |a|ug---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------auug 8341 aagcacagcu uuau------ ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acuaa-gaa( -ugacaa--- )uucaa-agc -aucaggaca ccug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 a|---uu-ag -GAUC-caga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------cu aa)--|---u 9001 cugAUCAAC- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CUUUUCCAAG 9061 AG(C--CCAA )AUCGACGAA --AAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -UC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AGCGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ---u-aguc- 9301 >--------- ---------- --A-UUU-AU CC--(UAGU- AC(-GAAA)G GAUU-)GGAU 9361 A--AA-- ggggccu-au au-------- 9421 -|-------- (-----) 9541 ---------- ---------- acac-gcccc cuu------- ---------- -------uua 9601 ---------- ---accuacu (gaagcc--a aauca)a-gu -ag-auaaua aa-------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaac a--)-ggguu a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (14)-Neopt 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (15)-TELEO 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (16)-EUTEL 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (17)-OSTAR 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (18)-CYPRI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (19)-CYPRI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (20)-CYPRI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.aur.1 10775 bp RNA RNA 04-JUL-1998 DEFINITION Mitochondrion Carassius auratus.; NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY) ; tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. ACCESSION AB006953 KEYWORDS NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY); tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. SOURCE Mitochondrion Carassius auratus. ORGANISM Mitochondrion Carassius auratus. REFERENCE 1 (sites) AUTHORS Murakami,M., Yamashita,Y. and Fujitani,H. TITLE ) The complete sequence of mitochondrial genome from a gynogenetic triploid 'ginbuna' (Carassius auratus langsdorfi JOURNAL Zool. Sci. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16578) AUTHORS Murakami,M. TITLE Direct Submission JOURNAL Submitted (29-AUG-1997) to the DDBJ/EMBL/GenBank databases. Masaru Murakami, Azabu University School of Veterinary Medicine, Laboratory of Molecular Biology; 1-17-71 Fuchinobe, Sagamihara, Kanagawa 229-8501, Japan (E-mail:murakami@azabu-u.ac.jp, Tel: 0427-54-7111, Fax: 0427-53-3395) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AB006953 BASE COUNT 608 a 387 c 345 g 342 t 9093 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caaaca 301 |gcu--agc| uua------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 UAA(AUCA)U UCU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucca---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-AAAGCAAU AGAA-AC--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa gugaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuga) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UACU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 agua-----a acauuaacaa gacaaca--- ---------- ---------- ---------- 3181 ----agagaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-A -CGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AC----- -aAAGG(AUA -CAA)CCU-u ucuag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUA|-(a- ac)a|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --acagaagu uuauuauccu gauaauaua- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----aauacu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| cAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- gg-------- (-cccgcccu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----aa-GCA CAA--gugua a|----gcca 4801 aauc----gg ---------- ----(--acu ag)c-c|--a uuggca---- ---------- 4861 ---acuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------a cucaacccaa gagagcaaug ugguauuaca aaaaaaccua gaaaaaccca 5761 caaccuaagu a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UACCCC- -(CACACU)G G|AGUGC--- ----(aacaa a-----)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacacaacc aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AAU AAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaac uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-caauaaa aaaugaaaac uuuguggaau a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaga uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAAAAGC- )CUCC-AG|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 ggagaauu-- uccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acuaa-gag( -agacau--- )cucua-agc -cacagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------aaua ca)--|--AG 9001 CCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaaac--a aauaa)a-ua -aa-auaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gg 9961 cc-(gaaaua a--)-ggaca u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.aur.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Carassius auratus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Carassius auratus. ORGANISM Mitochondrion Carassius auratus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: S50055 LOCUS S50055 1626 bp rRNA VRT 10-FEB-1993 DEFINITION large ribosomal RNA [goldfish, rRNA Mitochondrial, 1626 nt]. ACCESSION S50055 KEYWORDS . SOURCE goldfish. ORGANISM Unknown. Unclassified. REFERENCE 1 (bases 1 to 1626) AUTHORS Peng,G., Taylor,J.D. and Tchen,T.T. TITLE Increased mitochondrial activities in pigmented (melanized) fish cells and nucleotide sequence of mitochondrial large rRNA JOURNAL Biochem. Biophys. Res. Commun. 189 (1), 445-449 (1992) MEDLINE 93080595 REMARK GenBank staff at the National Library of Medicine created this entry [NCBI gibbsq 119190] from the original journal article. This sequence comes from Fig. 1. COMMENT NCBI gi: 260861 FEATURES Location/Qualifiers source 1..1626 /organism="unknown" /mitochondrion /note="goldfish" CDS 712..1212 /note="Description: orf" /codon_start=1 /transl_table=2 misc_feature 1..1212 /note="Description: large ribosomal RNA" BASE COUNT 586 a 370 c 339 g 331 t ORIGIN BASE COUNT 586 a 370 c 339 g 331 t 9149 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~AU 841 UAA(AUCA)U UCU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GCGA)CAGAA -aaggu---- 961 -------<-- --ucca---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-AAAGCGAU AGAA-AU--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-GCCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuga) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG--A 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UACU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 aaua-----a acauuaauaa gacaaca--- ---------- ---------- ---------- 3181 ----agagaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCUUU -G-AC----- -aAAGG(AUA -CAA)CCU-u ucuag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)GGCCA -CCUA|G(A- UA)-|GAAAG C(--GUUAA- )GC|-UCAg- acag--<--- 3841 --auagaagu uuauuauccu gauaauaua- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----aauacu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- gg-------- (-cccgcccu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----aa-GCA CAA--gugua a|----gcca 4801 aauc----gg ---------- ----(--aca ag)c-c|--a uuggca---- ---------- 4861 ---acuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acucaaccaa agagagcaau gugguaucac aaaaaaccua gaaaaaccca 5761 caaccuaaau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UACCCC- -(CACGCU)G G|AGUGC--- ----(aacaa a-----)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacacaacc aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAUU-)AGAG AC|CU-GUAU GAAUGGCUAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AAU AAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaac uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-caauaaa aagugaaaac uuuguggaac a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaga uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAAAAGC- )CUCC-AG|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------aacg 8341 ggaaaauu-- uccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acuaa-gag( -agacau--- )cucua-agc -cacagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aau ac)--|--AG 9001 CCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-U-(--CA -GC)CGCUAU UAAG-GGU|U CGUC(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- --u-CUU-UU CC--(U-GU- GC(--AAA)G GAUC-)GGAA 9361 A--AG-- ggggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaaac--a aauaa)a-ua -aa-auaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gg 9961 cc-(aaaaua a--)-ggaca uacuggaaaa aaaaaaaaaa aaaaa~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.carpi 10775 bp RNA RNA 29-JUL-1994 DEFINITION Mitochondrion Cyprinus carpio.; 12S ribosomal RNA; 16S ribosomal RNA homologue; ATPase 6; ATPase 8; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X61010 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA homologue; ATPase 6; ATPase 8; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Cyprinus carpio. ORGANISM Mitochondrion Cyprinus carpio. REFERENCE 1 (bases 1 to 16575) AUTHORS Huang,F.l. TITLE Direct Submission JOURNAL Chemistry, Academia Sinica, P O Box 23-106, Taipei, Taiwan Submitted (09-JUL-1991) F.L. Huang, Institute of Biological STANDARD No information REFERENCE 2 (bases 1 to 16575) AUTHORS Huang,F.l. TITLE Direct Submission JOURNAL Submitted (20-DEC-1993) F.L. Huang, Institute of Biological Chemistry, Academia Sinica, P O Box 23-106, Taipei, Taiwan STANDARD No information REFERENCE 3 (bases 1 to 16575) AUTHORS Chang,Y.S., Huang,F.L. and Lo,T.B. TITLE The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome JOURNAL J. Mol. Evol. 38 (2), 138-155 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X61010 On Dec 30, 1993 this sequence version replaced gi:12833. See X00918 and X17006 for overlapping sequences. BASE COUNT 615 a 397 c 335 g 334 t 9094 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caaaca 301 |GCU--AGC| UUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuGA- -GUAU-G(-G GAGA)CAGAA -Aaggu---- 961 -------<-- --uccac--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AA-GCGAU AGAA-AU--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuau) ---------- 2821 -GGCCCAC-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccucaaauca 3121 caca-----a acaaaacaag acuaaga--- ---------- ---------- ---------- 3181 ----gaaac- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-A -UGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(ACA -CAA)CCU-u uccag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaaaaagu uuauuauccc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----aauacu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- gg-------- (-cccgc--- ---------- ---------- 4741 ---------- -----)---- ---cc-|uuc uuccaa-gaA CAA--gugua a|----gcca 4801 aacc----gg ---------- ----(--acc aa)c-c|--a uuggca---- ---------- 4861 ---acuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acucaaucaa agagagcaau gugaauuaca aaaaaaccca agaaaaaucc 5761 acaacuaagc ua-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UACCCC- -(CACACU)G G|AGUGC--- ----(ccuaa ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (-aacgaacc aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|CC GGCGGUU(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AAU ACUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|--c-aaa acu--ca--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--accac -guuaagcaa --cuc-aaua 7561 aa-aagcaa- aaacc--uu- -guggauca- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uga-g-au -uu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAGAAAAGC- )CUCC-AG|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------acu 8341 gggaaaacc- uccuaaa--- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- accaa-gag( -agacau--- )cucua-agc --acagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc ua-------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca ca)--|-uaG 9001 CCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- ----acgcu- 9301 >--------- ---------- --A-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaaac--a aauaa)a-ua -aa-auaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gg 9961 cc-(aaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.bjoer 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Abramis bjoerkna.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Abramis bjoerkna. ORGANISM Mitochondrion Abramis bjoerkna. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038468 BASE COUNT 585 a 393 c 368 g 362 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UCU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guuaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uccccaaacc 3121 aaag-----a auacaccacu aagguacuc- ---------- ---------- ---------- 3181 ----agggua au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaca---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAG 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-cuugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccaa agaggguagu gugaacuaua cagaccucaa gaaaaacuca 5761 ca-gcuaaau aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uuaag-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuacauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-ccauaga aagcaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAAGAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggcuaaa--- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -auacau--- )cuaca-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 cc-(gaaaga a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.aluta 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Acrocheilus alutaceus.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Acrocheilus alutaceus. ORGANISM Mitochondrion Acrocheilus alutaceus. REFERENCE 1 (bases 1 to 1764) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1764) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038469 BASE COUNT 592 a 380 c 367 g 372 t 9064 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccagauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-aacaac aaaaauaucg aagaagaauu 5761 cacaauuaaa cuga------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-agu uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-agaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggguaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cugua-agc -cgcagaaug ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGG|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.plumb 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Couesius plumbeus.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Couesius plumbeus. ORGANISM Mitochondrion Couesius plumbeus. REFERENCE 1 (bases 1 to 1756) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1756) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038470 BASE COUNT 579 a 404 c 358 g 362 t 9072 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucca---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 --------CC C-GAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auuaaucua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaacca 3121 -aua-----a a--u--aua- u-cauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-g -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua guacaca-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-uCcg- acag--<--- 3841 --agagaagu uuauuauauc gauaagaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aguau auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAC--gugua a|----acca 4801 gauu----gg ---------- ----(--acc aa)c-c|--a cuggac---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguagu gugaauaaua agaaccucaa gaagaccuca 5761 caccc-aaau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|CGUGC--- ----(uauuu a-aaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuauuaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAA UCUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaac uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggccu g--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaga uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAUGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaau-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa uccga-aag( -agacau--- )cuuua-ggc -cacagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cg-c u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------caa au)--|---g 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCGU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauucau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.acros 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Eremichthys acros.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Eremichthys acros. ORGANISM Mitochondrion Eremichthys acros. REFERENCE 1 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038471 BASE COUNT 563 a 370 c 353 g 360 t 9129 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau uaccccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCGAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAG-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGG --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACU-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccgcauca 3121 ---a-----a acau--acau uau--ca--- ---------- ---------- ---------- 3181 ----agauac ccaagggaaa ua-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(G- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaggaagu uuauuauacu gauaaacaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuuu auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccg---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gugg-auaac a-uaaaccuc aagaagaguu 5761 cacaauuaga ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |--------- ---------- ---------- ---CGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu uga---)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccguaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAGACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------gcug 8341 ggcaaau--- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -agacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgau c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gc)--|--ga 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.atrar 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila atraria.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Gila atraria. ORGANISM Mitochondrion Gila atraria. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038472 BASE COUNT 595 a 376 c 364 g 375 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------u augu--aua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac ugagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaauuagac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaag)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--ag 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.coe.2 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038474 BASE COUNT 592 a 380 c 362 g 374 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucgaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-AGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaauuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacugaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aacuaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.coe.1 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038473 BASE COUNT 591 a 378 c 364 g 375 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucgaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-AGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaauuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacugaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UGU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.consp 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila conspersa.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Gila conspersa. ORGANISM Mitochondrion Gila conspersa. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038475 BASE COUNT 599 a 383 c 358 g 370 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCGG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauau caagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-CGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaggu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-agcaac aaaaauauca agaagaacuc 5761 acaauuaaac caa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauc ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ucauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaac uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcgaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.cypha 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila cypha.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Gila cypha. ORGANISM Mitochondrion Gila cypha. REFERENCE 1 (bases 1 to 1763) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1763) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038477 BASE COUNT 598 a 377 c 361 g 374 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------u augu--aua- uuauu-a--- ---------- ---------- ---------- 3181 ----agacac ugagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-gC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaguuagac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aac uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--ag 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.ditae 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila ditaenia.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Gila ditaenia. ORGANISM Mitochondrion Gila ditaenia. REFERENCE 1 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038476 BASE COUNT 581 a 382 c 377 g 372 t 9063 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauc- 3121 --g------- acau-guaaa uuauuua--- ---------- ---------- ---------- 3181 ----agauau uaagggagac a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u ugcag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaggu uuauuauacc gauaagaua- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----guuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- gg-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uc-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaacauca aggaagaauu 5761 cacaacuaag cuaa------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaguu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aac cua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa g--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaag uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -gaacac--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------ccg ua)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaacc--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.nigre 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila nigrescens.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Gila nigrescens. ORGANISM Mitochondrion Gila nigrescens. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038478 BASE COUNT 592 a 379 c 363 g 375 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuu-guuu 2701 gaa-acCCCG AA-ACCGG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au acu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------u auau--aua- cuauu-a--- ---------- ---------- ---------- 3181 ----agauau uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u ugcag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|C(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguagu gugaccaaca aagauaucaa gaagaauuca 5761 caauuaaacu aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaag)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaac uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggguaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.orcut 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila orcutti.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Gila orcutti. ORGANISM Mitochondrion Gila orcutti. REFERENCE 1 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038479 BASE COUNT 591 a 375 c 366 g 380 t 9063 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac cuaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UAUU-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauuuguau acuauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u ugcag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(G- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----uuuau auCAG-Au|- UA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagaguaau gugagcaaca aagauaucaa gaaaaauuca 5761 caa-uuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaguu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-acaa 7561 cu-ccauaag aaguaagaac uuaguggcag a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAGAAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacgu--- )cuaua-ggc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aagaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.pando 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila pandora.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Gila pandora. ORGANISM Mitochondrion Gila pandora. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038480 BASE COUNT 597 a 379 c 360 g 374 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 cAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauauaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauau uaagggaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --agaggagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-agcaac aaaaauauca agaagaauuc 5761 acaauuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaac uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcgaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.robus 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila robusta.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Gila robusta. ORGANISM Mitochondrion Gila robusta. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038481 BASE COUNT 594 a 376 c 368 g 373 t 9064 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------agc 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaacac- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cau--auaa auuauua--- ---------- ---------- ---------- 3181 ----agauau uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auauaua-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCaa- acag--<--- 3841 --aaagaggu uuauuauacc gauaaaaga- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----guuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca ggaagaauuc 5761 acaauuaaaa uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaga)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-agu uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aagugagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuuu--U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 ggguagac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aagaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.exi.1 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038482 BASE COUNT 598 a 380 c 360 g 371 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccaacau- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauc- 3121 --g------- acau--auac auuauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauauc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-agcaac aauagaccuc aagaagaacu 5761 cacagucaua auaa------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu auaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAUA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AUU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau cua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-agaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- gccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gc)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.exi.2 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038483 BASE COUNT 598 a 381 c 360 g 371 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccaacgu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauc- 3121 --g------- acau--auac auuauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauauc aauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAg-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-agcaac aauagaccuc aagaagaacu 5761 cacagucaua auaa------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu auaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAUA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AUU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau cua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-agaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- gccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gc)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.rutil 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Leuciscus rutilus.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Leuciscus rutilus. ORGANISM Mitochondrion Leuciscus rutilus. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038484 BASE COUNT 582 a 392 c 370 g 364 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug uaaauuggau cg-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au -u-aauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaacca 3121 aa-------- -g---aauac acuacca--- ---------- ---------- ---------- 3181 ----aggugc ucagggaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCcUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaca---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAG 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gugaacaaca uagacuucag gaaggacuca 5761 caa-cuaaau aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAAUCC- -(CACACU)G G|AGUGC--- ----(uauuu uuuaag)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (gacuacauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uca--g---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-auga 7561 cu-cuacaaa aagcaagaac cuaguggcca g--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaag uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAGAUAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggcuaaau-- cccca----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -auacau--- )cuaua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aagaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(aaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09469 LOCUS LCU09469 2007 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus chrysocephalus Whitewater R., Bollinger Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09469 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2007) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2007) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488578 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2007 /product="16S rRNA" source 1..2007 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Whitewater R., Bollinger Co., MO, USA" /haplotype="CHRC" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 662 a 468 c 451 g 426 t ORIGIN BASE COUNT 500 a 332 c 320 g 315 t 9308 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-GA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 aaaa-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu ag)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau agaccucaag aagagcucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uuaacCC- -(CACACU)G G|AGUGg--- ----(cauuu uaa---)--- ----gggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaga ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CG ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaguu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aucacg uuaagcaacu ccaua-agaa 7561 cg---aag-- ---aacuua- ---------- gugg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaaa uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaagac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -gaacac--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aacaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09472 LOCUS LCU09472 2008 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus isolepis mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09472 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2008) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2008) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488581 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2008 /product="16S rRNA" source 1..2008 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="isolepis" /isolate="Collection site: Saline R., Grant Co., AR, USA" /haplotype="CHRI" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 661 a 468 c 451 g 428 t ORIGIN BASE COUNT 500 a 332 c 320 g 316 t 9307 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-GA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 aaga-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu ag)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauaa agaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uuaacCC- -(CACACU)G G|AGUGg--- ----(cauuu uaa---)--- ----gggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CG ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccaua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaagac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacac--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aau aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.3 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09473 LOCUS LCU09473 2003 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus chrysocephalus Meramec R., Jefferson Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09473 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488582 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Meramec R., Jefferson Co., MO, USA" /haplotype="CORN3" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 656 a 468 c 454 g 425 t ORIGIN BASE COUNT 496 a 331 c 320 g 316 t 9312 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucauca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaagua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau aaaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugaUCC- -(CACACU)G -|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcauaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|cagaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ---------- 7561 ---------- ccaugagaag caagaacuua gugg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccgu-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.4 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09474 LOCUS LCU09474 2006 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus chrysocephalus Fourche A Du Clos Cr., Ste. Genevieve, MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09474 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2006) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2006) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488583 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2006 /product="16S rRNA" source 1..2006 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Fourche A Du Clos Cr., Ste. Genevieve, MO, USA" /haplotype="CORN4" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 662 a 470 c 451 g 423 t ORIGIN BASE COUNT 502 a 333 c 317 g 314 t 9309 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau aaaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugauCC- -(CACACU)G G|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-AAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccuua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.cor.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus cornutus. ORGANISM Mitochondrion Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09470 LOCUS LCU09470 2004 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus cornutus Yellow R., Chippewa Co., WI, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09470 KEYWORDS . SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488579 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Yellow R., Chippewa Co., WI, USA" /haplotype="CORN1" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 660 a 469 c 451 g 424 t ORIGIN BASE COUNT 500 a 332 c 317 g 315 t 9311 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AGG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau aaaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugauCC- -(CACACU)G G|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccuua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.cor.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Luxilus cornutus. ORGANISM Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09471 LOCUS LCU09471 2004 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus cornutus Perche Cr., Boone Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09471 KEYWORDS . SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488580 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Perche Cr., Boone Co., MO, USA" /haplotype="CORN2" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 658 a 468 c 453 g 425 t ORIGIN BASE COUNT 498 a 331 c 319 g 316 t 9311 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucauca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaagua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 -------gcc caaccaaaga ggcauuguga auaauauaaa ---ccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugauCC- -(CACACU)G G|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcauaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|cagaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccaua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccgu-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.marga 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Margariscus margarita.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Margariscus margarita. ORGANISM Mitochondrion Margariscus margarita. REFERENCE 1 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038485 BASE COUNT 591 a 383 c 361 g 367 t 9073 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ua-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au au-aauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUUA CGUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaacca 3121 a--------- ug---aauau aucauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-g -uGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AC----- -aAAGG(AUA -CAA)CCU-u cgcag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAGA 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaugu auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-cuugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----aa-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguagu gugaacaaua aaaaucucaa gaagaccuca 5761 acaguuagau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uaaa--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuauuaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAA UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caagau uca--a---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-auaa 7561 cu-ccauaaa aaguaagaac uuaauggcac a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA UAAAUAAGC- )CUCC-GC|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaau-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -agacau--- )cucua-ggc -cacagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aa- ag)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -ga-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aag--ccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(gaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.ather 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Notropis atherinoides.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Notropis atherinoides. ORGANISM Mitochondrion Notropis atherinoides. REFERENCE 1 (bases 1 to 1753) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1753) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038486 BASE COUNT 568 a 399 c 375 g 358 t 9075 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaccu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au au-aauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG CACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 a--------- ga---aauac aucauca--- ---------- ---------- ---------- 3181 ----agauau uauggauau- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u aacag-g-ag -ga-UAA--- 3541 --agaucaua auuaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -uCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --aacgaagu uuauuauccc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----acugu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGUGAG ACUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-cucgaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-CCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu ag)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agagggcauu gcgaauaaua aagaccucag gaagagcccg 5761 caauuaacug a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGG--- ----(cauuu uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (agcauaaa- ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AGU ACUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-cagaau uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-ccauaaa cagcaagaac uuagugg-uc a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccgaga-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -aaacau--- )cuuca-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------a-g aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(CAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauucau (gaaaac--a aauaa)a-uc -aa-auaagg g--------- 9661 ---------- -------<-- -----aggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gc 9961 cc-(aagaua a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.rubel 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Notropis rubellus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Notropis rubellus. ORGANISM Mitochondrion Notropis rubellus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09475 LOCUS NRU09475 2003 bp DNA VRT 22-MAY-1994 DEFINITION Notropis rubellus mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09475 KEYWORDS . SOURCE rosyface shiner ORGANISM Mitochondrion Notropis rubellus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Notropis. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488584 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Notropis rubellus" /isolate="Collection site: Meramec R., Franklin Co., MO, USA" /haplotype="RUBE" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 649 a 470 c 460 g 424 t ORIGIN BASE COUNT 489 a 334 c 327 g 313 t 9312 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AUAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u a-GA-GCAAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AG 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agga-----g cacaucauca agauaau--- ---------- ---------- ---------- 3181 ----auggau ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u agcag-g-ag -ga-UAA--- 3541 --agaucaua guuaaua-a- gauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucag- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu ag)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 -------gcc caaccaaaga ggcauugcgu aauauaaa-- ---ccucaag aagaacccgc 5761 aauuaacuaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugacCC- -(CACACU)G G|AGUGg--- ----(cauuu uaa---)--- ----gggaa| 6541 |---AGGC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-aacauaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU------- ACUACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaguu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccaua-agaa 7561 ---------- ---------g caagaacuua gugg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -uuau-gaag uu----u-uc auUCGGUUG( 8161 GGU)CG-AC- C|GCGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccgagac--c cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuca-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.mirab 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phenacobius mirabilis.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Phenacobius mirabilis. ORGANISM Mitochondrion Phenacobius mirabilis. REFERENCE 1 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038492 BASE COUNT 570 a 401 c 357 g 366 t 9081 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAU-G(-G GAGA)CAGAA --aggg---- 961 -------<-- --cucaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --GAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaau ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au au-a-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --UGAGCUC- CGGGUAG-AA 2881 GU(G-AUAA) ACU-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG UCCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuuguca 3121 ggaa-----a uauacuacua agacacc--- ---------- ---------- ---------- 3181 ----uuggaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ac-A -CGAG-AGUU AGUUu--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auuaaua-a- aaccua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(U- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --gaaaaagu uuauuauacc aauaaaaaaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----acuau auUAG-GC|- UA-ACCCAUA ---------- 4501 ---------- ---------- (cuuc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUGGGUGAA ACUAUGC-UA 4681 AA|AUGAGUA -AUAA-GAA- ga-------- (-ccugaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ug-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu ag)c-c|--g cuggga---- ---------- 4861 ---uucaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ccccaaccaa agagggcauu gugauuaaua aaaaccucaa ggagagcuca 5761 caauuaagua a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UACCCC- -(CACACU)G G|AGUGC--- ----(ca-uu uaaa--)--- -----ggaa| 6541 |---AGAC-U U--AAAGAGG -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aaAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacacaa-- ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UG-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAA ACUACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AGG UA|-caaaac uua--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-cuuucaa aagcaagaac cuagugg-cc c--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-aaag ucu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAACUAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------aaug 8341 gg-uaau--- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aacaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------cu ag)--|--gg 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AA-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaacc--a aauaa)a-uu -aa--acaag g--------- 9661 ---------- -------<-- ----gcggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aa--cccugc c----->--| ------(--- )--------- -------|gc 9961 cc-(aaaaua a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.graci 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Platygobio gracilis.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Platygobio gracilis. ORGANISM Mitochondrion Platygobio gracilis. REFERENCE 1 (bases 1 to 1754) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1754) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038491 BASE COUNT 578 a 400 c 367 g 356 t 9074 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----uaacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UuU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaccc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guaa-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 a-ga-----a acau---acc gu---ca--- ---------- ---------- ---------- 3181 ----agacau uauggaaaa- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --aaggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAUGAG ACUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-CCA CAA--gugua g|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaacuaa agagggcauu gugaauaaua aagaccucaa gaagaacuca 5761 ca-cuaaaug a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauau uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacauuaa- ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC AGUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caagac uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccguaga aagcaagaac uuagugg-cc a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-gaaa cuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gg-ccaaaac cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -agacau--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aau aa)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauucau (gaaaac--a aauaa)a-uu -aa-auaagg g--------- 9661 ---------- -------<-- -----aggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca gaaccccugc c----->--| ------(--- )--------- -------|gc 9961 cc-(aaguua a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.atrat 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Rhinichthys atratulus.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Rhinichthys atratulus. ORGANISM Mitochondrion Rhinichthys atratulus. REFERENCE 1 (bases 1 to 1759) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1759) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038495 BASE COUNT 571 a 402 c 379 g 354 t 9069 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ca-cccugaG C--------- ----uaacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaaccc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCGAU AGAG-AG--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guaa-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG CACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccgaauca 3121 aa-------- -agaaguauc ac---ca--- ---------- ---------- ---------- 3181 ----agaugc uuaagggaaa ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gu-g -CGAG-AGUU AGUUg--AA- GG-GG(-GUA 3481 CAG)CCCCUU CA-AC----- -aAAGG(AUA -CAA)CCU-u cccag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- gacaca---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -uCUA|A(G- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaguaaau uuauuauacc gauaaacaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-GC|- cg-ACCCAUG ---------- 4501 ---------- ---------- -cccg----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-CCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--g cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaacuca agagggcaau gugaauaaua aagaccccaa gaagaacuca 5761 caacuaaaug a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU AGUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-ccuuaag aagcaagaac uuagugg-cc g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAUGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------auug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -aaacau--- )cucua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aaa a-)--|--ag 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(CAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-gugaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccuac c----->--| ------(--- )--------- -------|gc 9961 cc-(gauaga a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.copei 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Snyderichthys copei.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Snyderichthys copei. ORGANISM Mitochondrion Snyderichthys copei. REFERENCE 1 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038498 BASE COUNT 556 a 393 c 388 g 365 t 9073 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----cgacca 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UuU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -agggu---- 961 -------<-- --ucacccc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAGU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuagac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GUacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auuaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUUA UGCC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccggauca 3121 aa-------- -g---aauau auuauua--- ---------- ---------- ---------- 3181 ----agauac ucugggcgau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ac-g -uGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaca-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(G- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --agagaagu uuauuauacc gauaaguaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----acugu auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccug----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| CAUG-AAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguacu gugaacaaua uaaaccucaa gaagaccuca 5761 caaucaagca a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCU- -(CACACU)A G|CGUGC--- ----(cguuu uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aguuauuaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UGU----AAA UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caagau uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccgc guuaa-acaa 7561 cu-cccuaaa aagcaagaac uuaguggcau a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAGUAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggcgaa-a-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccga-gag( -agacau--- )cucua-ggc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cgg a-)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCGU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------a gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauugau (gaggac--a aauaa)a-uu -aa-gcaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aag-cccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(gaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.mic.1 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038488 BASE COUNT 594 a 392 c 365 g 359 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaucu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gac-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------aa acua-auua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UCUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UAcg<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac caggagaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -UGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauagaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ua-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccca agagggcaau gugaacaaca aagaccccaa gaagaacuca 5761 caaguaagcu a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGAGA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UUAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uua--a---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ucac guuaa-acaa 7561 cu-ucauaaa aagugagaac uuagugacag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-cag( -agacac--- )cugua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaag UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca ag)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-Uu CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au acc------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.mic.2 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038489 BASE COUNT 595 a 392 c 363 g 359 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaucu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gac-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------aa acua-auua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UCUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACK<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac caggagaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -UGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauagaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ua-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccca agagggcaau gugaacaaca aagaccccaa gaagaacuca 5761 caaguaagcu a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGAGA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UUAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uua--a---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ucac guuaa-acaa 7561 cu-ucauaaa aagugagaac uuagugacag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-cag( -agacac--- )cugua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaag UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca ag)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au acc------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.neoga 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus neogaeus.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Phoxinus neogaeus. ORGANISM Mitochondrion Phoxinus neogaeus. REFERENCE 1 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038493 BASE COUNT 585 a 379 c 363 g 378 t 9070 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ua-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccacuau- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCCAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gga-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-CUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccccaaauc 3121 aagg-----a auauauuaug aagauauuaa gggc------ ---------- ---------- 3181 ----g----- ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-a -uGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UG-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- -ccua----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ua-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccua agagggcaau gugaacagua aagacuucaa gaagaacuca 5761 caa-uugaau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uguuu uuaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAUA AGGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-acaa 7561 cu-cuauaga aaguaagaac uuaguggaca g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaca uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -guacac--- )cuaua-agc -cucagaauu ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cga- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cag aa)--|---g 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(G--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -ga-guaaag g--------- 9661 ---------- -------<-- ----guggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaacccccgc c----->--| ------(--- )--------- -------|gc 9961 cc-(aagaga a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.eryth 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus erythrogaster.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Phoxinus erythrogaster. ORGANISM Mitochondrion Phoxinus erythrogaster. REFERENCE 1 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038490 BASE COUNT 580 a 383 c 370 g 370 t 9072 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ua-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccauuau- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gga-ucCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --GGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGUa<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaguca 3121 agga-----a gauauuauua agauacua-- ---------- ---------- ---------- 3181 ----agggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -UGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCUuc uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(U- UA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --acggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- -ccua----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ug-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--g cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug--aacaa uagaggaccc caagaagaac 5761 ucacaacgc- a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uguuu uuaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAACGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaga aaguaagaac uuaguggaca g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaca uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaau-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -gaacac--- )cuaua-agc -cgcagaauu ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|---g 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(G--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -ga-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------ccu aaacccccgc c----->--| ------(--- )--------- -------|gc 9961 cc-(aagaga a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.orego 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Ptychocheilus oregonensis.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Ptychocheilus oregonensis. ORGANISM Mitochondrion Ptychocheilus oregonensis. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038494 BASE COUNT 593 a 382 c 363 g 373 t 9064 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccagauca 3121 a--------- uacguauguu auu---a--- ---------- ---------- ---------- 3181 ----agauac ucaagggaga u--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ac-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CGG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-aacaac aaaaaucuca agaagaacuc 5761 acaguuaaac uga------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGAUA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--c---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -agacau--- )uuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gu)--|--ga 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.solit 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Relictus solitarius.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Relictus solitarius. ORGANISM Mitochondrion Relictus solitarius. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038496 BASE COUNT 587 a 382 c 366 g 374 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucacccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gga-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaguca 3121 a-ca-----u auauuauuaa gauguuc--- ---------- ---------- ---------- 3181 ----agggaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUA|G(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- gcag--<--- 3841 --aaggaagu uuauuauacc gauaagaaaa ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-cuugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gugagcaaca aagauaucaa gaagaauuca 5761 caauaaacua a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauau uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuacuuu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaugu uua--c---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ucauaaa aagcaagaac uuaguggcag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaga cuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuag-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaga UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uua gc)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUu-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aacaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cua aaaccccuac c----->--| ------(--- )--------- -------|gc 9961 uc-(aagaua a--)-gggaa ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.bicol 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Siphateles bicolor.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Siphateles bicolor. ORGANISM Mitochondrion Siphateles bicolor. REFERENCE 1 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038497 BASE COUNT 588 a 376 c 363 g 376 t 9072 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UuU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UUCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a-ga-----u u-auuaa--g auacuau--- ---------- ---------- ---------- 3181 ----gg-gaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------aU-A -UGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCUuu uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- gu-------- (-cccgcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--g cuggaa---- ---------- 4861 ---cuuag-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-aacaac aaaaaucuca agaaaaauuc 5761 acaauuaaac a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAAUCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGAUA -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUUCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UCUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GGGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUU-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gg)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUu-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (20)-Homal 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.lacus 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Crossostoma lacustre. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Crossostoma lacustre. ORGANISM mitochondrion Crossostoma lacustre. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M91245 LOCUS CRQMTGENOM 16558 bp ds-DNA ORG 05-OCT-1992 DEFINITION Crossostoma lacustre mitochondrion, complete genome. ACCESSION M91245 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; D-loop; NADH dehydrogenase; cytochrome b; cytochrome c oxidase; mitochondrial genome; tRNA. SOURCE Mitochondrion Crossostoma lacustre (chromosome Mitochondrion Crossostoma lacustre) female DNA. ORGANISM Mitochondrion Crossostoma lacustre Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Cypriniformes; Cyprioidei; Homalopteridae. REFERENCE 1 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Shen,S.-C. and Huang,P.-C. TITLE Mitochondrial DNA identity of Crossostoma (Homalopteridae, Pisces) from two river systems of the same geographical origin JOURNAL Bull. Inst. Zool. Acad. Sin. 29, 11-19 (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Hui,C.-F., Shen,S.-C. and Huang,P.-C. TITLE The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates JOURNAL Nucleic Acids Res. 20, 4853-4858 (1992) STANDARD full automatic FEATURES Location/Qualifiers D-loop 1..896 tRNA 898..967 /note="anticodon unspecified" rRNA 968..1918 /product="12S ribosomal RNA" /note="putative" tRNA 1919..1990 /note="anticodon location unspecified; amino acid = Val" rRNA 1991..3670 /product="16S ribosomal RNA" tRNA 3671..3744 /note="anticodon location unspecified; amino acid = Leu (UUC)" /note="putative" tRNA 4728..4801 /note="anticodon location unspecified; amino acid = Ile" /note="putative" tRNA complement(4799..4869) /note="anticodon location unspecified; amino acid = Gln" /note="putative" tRNA 4871..4939 /note="anticodon location unspecified; amino acid = Met" /note="putative" tRNA 5985..6055 /note="anticodon location unspecified; amino acid = Trp" /note="putative" tRNA complement(6058..6126) /note="anticodon location unspecified; amino acid = Ala" /note="putative" tRNA complement(6128..6200) /note="anticodon location unspecified; amino acid = Asn" /note="putative" tRNA complement(6231..6298) /note="anticodon location unspecified; amino acid = Cys" /note="putative" tRNA complement(6298..6365) /note="anticodon location unspecified; amino acid = Tyr" /note="putative" tRNA complement(7920..7988) /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 7992..8064 /note="anticodon location unspecified; amino acid = Asp" /note="putative" tRNA 8769..8844 /note="anticodon location unspecified; amino acid = Lys" /note="putative" tRNA 10472..10543 /note="anticodon location unspecified; amino acid = Gly" /note="putative" tRNA 10893..10962 /note="anticodon location unspecified; amino acid = Arg" /note="putative" tRNA 12634..12704 /note="anticodon location unspecified; amino acid = His" /note="putative" tRNA 12704..12773 /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 12774..12846 /note="anticodon location unspecified; amino acid = Leu" /note="putative" tRNA complement(15205..15271) /note="anticodon location unspecified; amino acid = Glu" /note="putative" tRNA 16419..16490 /note="anticodon location unspecified; amino acid = Thr" /note="putative" tRNA complement(16489..16558) /note="anticodon location unspecified; amino acid = Pro" /note="putative" CDS 3746..4720 /note="putative" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLNTLLTHLINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPN IVGPYGLLQPIADGVKLFIKEPIRPSTASPTLFLVTPMLALTLAMTLWAPMPMPHPII DLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILRSII IFWGGYTVQTFNTTQEALWLLLPACPLAAMWYISTLAETNRAPFDLTEGESELAPGFN VEYAGGPFALLFLAEYANILLMNTLSAILFLGASHMPAIPELTTINLMTKAALLSVVF LWVRASYPRFRYDQLMHLVWKNFLPLTLALVLWHTALPIAFAGLPPQL" CDS 4940..5986 /note="putative" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLMILISSLGLGTTLTFASSHWLLAWMGLEINTLAILRLM AQQHHPRAVEATTKYFLTQATAAAMILFAATTNAWATGEWDINNLTHPLASSLTMMAL ALKVGLAPMHFWMPEVLQGLDLTMGLILSTWQKLAPFALITQMAPNTNPMLLTTLGLL STLIGGWGGLNQTQLRKILAYSSIAHMGWMIIILQYTPQLTLIALGLYIFMTSAAFLS LKMASATKMNTLTAAWSKSPVLVSTTALTLLSLGGLPPLTGFMPKWLILQELTKQDLP ATATIMALAALLSLYFYLRLSYAMALTIYPNTTNALTPWRTNTTQSTLALALMMIGAL GLLPLTPTIMALFF" CDS 6367..7917 /note="putative" /product="cytochrome c oxidase subunit I" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELNQP GALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPHMAFPRMNNMSF WLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTTINMKPPALSQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGTIKW DTPMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGFSLHDTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLISLVAVIIFLFILWEAFASKRQVMSVELTMTNVEWLHGCPPPYHTFEEP AFVQVRSN" CDS 8078..8768 /note="putative" /product="cytochrome c oxidase subunit II" /codon_start=1 /translation="MAHPTQLGFQDAASPVMEELLHFHDHALMIVFLISALVLYVIIT TVSTKLTNMYILDSQEIEIVWTVLPALILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYENLSFDSYMIPTQDLTPGQFRLLETDHRMVVPMESPIRILVSAEDVL HSWALPAMGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLSH FENWSTLMLKDA" CDS 8846..9013 /note="putative" /product="ATPase 8" /codon_start=1 /translation="MPQLNPAPWFTILVFSWMIFLAIIPTKVMGHTSPNDSSPLSTEK HKTESWDWPWQ" CDS 9004..9687 /note="putative" /product="ATPase 6" /codon_start=1 /translation="MAMSFFDQFASPSYLGIPLIAIAIALPWVLFPLPSLRWVNNRLI TIQGWLINRFTNQLMLPLNTGGHKWALLLASLMVFLITINMLGLLPYTFTPTTQLSLN MGLAIPLWLATVIIGLRNQPTVALGDLLPEGTPLPLIPVLIIIETISLFIRPLALGVR LTANLTAGHLLIQLIATAVFVLLPMMPTVAILTATVLFLLTLLEVAVAMIQAYVFVLL LSLYLQENV" CDS 9687..10472 /note="putative" /product="cytochrome c oxidase III" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIRALFLTSGLAIWFHFQSVTLLT LGLILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HSSLAPTPELGGCWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGARKQAI QALALTIILGVYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSSFLAVC LLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10544..10894 /note="putative" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLVISILAITIILSSILAVVSFWLPQMNPDAEKLSPYECGFDP LGSARLPFSIRFFLVAILFLLFDLEIALLLALPWGDQLYSATGTFFWATAVLILLTLG LIYEWTQGGLEWAE" CDS 10963..11259 /note="putative" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFYRTHLLSALLCLEGMMLSLFIAL ALWALQFESTGFSTAPMLLLAFSACEASAGPGLLVATARTHGTDRLQNLNLLQC" CDS 11253..12635 /note="putative" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKVLIPTIMLFPTIWLTPPKWLWSTTTAHGLLIALISLTWLKW SSEVGSATSSLYLASDPLSTPLLGLTCWLLPLMVLASQNHITPEPIIRQRLYITLLAS LQTFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLLQQTNGTLSLLILQHSQPLALTSWGHKIWWAGCLIAFLVKMPLYGVHLWLP KAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVVLDPLSKELAYPFIILALWGIIMTGSI CLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTA YERTHSRTMILARGLQMIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPL TIILTGTGTLITAGYSLYLFLMSQRGPTPKHIVGLPPFHTREHLLMALHLIPVLLLMT KPEIMWGWCY" CDS 12847..14683 /note="putative" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTPLILSSSLLLVIIILIYPVLTSLNPNPQNPKWATSHVKTA VSSAFLISLLPLAVFLDQGTETIVTNWHWMNTTMFDINISFKFDYYSLVFTPIALYVT WSILEFASWYMHADPYVNRFFKYLLTFLIAMITLVTANNMFQLFIGWEGVGIMSFLLI GWWYGRADANTAALQAWIYNRVGDIGLIMSMAWLAMNLNSWEIQQIFFLSKDFDMTLP LMGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRLHAIMENN QLALTTCLCLGALTSLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQNLLPFTSTCLTIGSLALTGTPFL AGFFSKDAIIEAMNTSYLNAWALTLTLIATSFTAVYSFRVVFFVSMGTPRFLPLSPIN ENNPAVINPIKRLAWGSIIAGLIITSNLLPSKSPVMTMPPTLKMAALMVTAIGLFTAM ELATLTSKQYKTNPITQTHHFSNMLGFFPSVVHRLMKKLNLTLGQLAATQMVDQTWFE AAGPKGASSTQIKMAKITSDTQRGMIKTYLTIFLLTTALATRLATI" CDS complement(14682..15203) /note="putative" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLLLMALIVGLIAVASNPAPYFAALGLVVAAGVGCGVLV SHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVVGYVMIYLLGVGLMV GVFWEGWYEGSWVVIDGLKEFSVLRGDTSGVAEMYSYGGGMLVICAWVLLLTLFVVLE LTRGLSRGTIRAV" CDS 15278..16418 /note="putative" /product="cytochrome b" /codon_start=1 /translation="MASLRKTHPLIKIANDALVDLPAPSNISVWWNFGSLLGLCLITQ ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHIARGL YYGSYLYKETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDML VQWIWGGFSVDNATLTRFFAFHFLFPFIVAAVTILHLLFLHETGSNNPAGLNSDADKI SFHPYFSYKDLLGFVVMLLGLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPVLHTSKQRGLTFRPATQFLFWTLVADMII LTWIGGMPVEHPYIIIGQIASILYFALFLILIPLAGWLENKALEWV" BASE COUNT 4876 a 4743 c 2791 g 4148 t ORIGIN BASE COUNT 594 a 418 c 338 g 330 t 9095 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caaaca 301 |GCU--AGC| UUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(ACCA)U UUU------- ---------- ---------- ---------- --------uc 901 ------(--- --)------- |cac-cuUA- -GUAC-G(-G GCGA)CGGAA -Aagga---- 961 -------<-- --uccgau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaaaagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-CAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acacaac 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GAaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-GGA-CC GCCA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----acau) ---------- 2821 -GGGCCAA-C CC-AUCUCU( GUGGCAA-A) AGAG-UGGGG --AGAGCCC- CGGGUAG-AG 2881 GU(G-AUAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGUCU--GGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG CACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccuugaguua 3121 aaua-----a gaaacacucu aacauaa--- ---------- ---------- ---------- 3181 ----cacaaa aagagaa--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-G -CGAG-AGUU AGUCA--AA- GG-GG(-GUA 3481 CAG)CCCCUC UG-AU----- -aAAGA(AUA -CAA)CCUua gccag-g-ag -ga-UAA--- 3541 --ggaucaua cuuaaca-a- aacacg---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------ucgu c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UCAGU-G GGC(CCAAAA 3781 GC-A)-GCCA -UCUG|A(U- CA)-|GAAAG C(--GUUAAA )GC|-UCAa- acga--<--- 3841 --cacaaagu uuauuauucu gauaaacaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ccac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaauu aCCAG-AC|- UA-UUCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA ACUAUGC-UA 4681 AA|AUGAGUA -ACAA-GGG- ggu------- (-caug---- ---------- ---------- 4741 ---------- -----)---- --gcc-|ccc u-cccg-GCA CAA--gugua a|----gcca 4801 gacc----gg ---------- ----(--acc ca)c-c|--a cuggca---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaaaaa agagggaugc auggaaga-c aaaaaaccaa gaaaacccca 5761 uguuauaaca a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -c-UAACCC- -(CACACU)G G|AGUGC--- ----(ccc-c ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aUAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (-aaaccacg aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------cua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCUGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|CU-GUAU GAAUGGCCAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAA CCUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|--c-aaa ccc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ccac -gucaagcaa ccaca-uaaa 7561 ug-gcauaaa auua------ -gugagua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --gug-g-aa -uu---U-UA CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAAAGAUC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------acu 8341 gagccaacaa gcuuaaa--- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- acuac-gaa( -aaacau--- )uucuu-ucu -cucuauccc ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cgac ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----cuaua aa)--|---G 9001 UCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUUACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGU CU|GG-U(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- ----acguu- 9301 >--------- ---------- --A-CUU-UU CC--(UAGU- AC(-GAAA)G GAACc)GGAA 9361 A--AG-- agggcca-ac ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gugc-gcccu acc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaacc--a acuaa)a-uu -aa-gcaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|ug 9961 cc-(aaaaua a--)-ggcca c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (17)-Parac 10775 bp RNA RNA 09-JAN-1999 DEFINITION Paracanthopterygii. ACCESSION No information KEYWORDS No information. SOURCE Paracanthopterygii. ORGANISM Paracanthopterygii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.G.morhu 10775 bp RNA RNA 08-AUG-1996 DEFINITION Mitochondrion Gadus morhua.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION X99772 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Gadus morhua. ORGANISM Mitochondrion Gadus morhua. REFERENCE 1 (bases 1 to 16696) AUTHORS Johansen,S. and Bakke,I. TITLE The complete mitochondrial DNA sequence of Atlantic cod, Gadus morhua: relevance to taxonomic studies among cod-fishes JOURNAL Mol. Marine Biol. Biotechnol. In press STANDARD No information REFERENCE 2 (bases 1 to 16696) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (01-AUG-1996) S. Johansen, Institute of Medical Biology, University of Tromso, MH-Building, Breivika, 9037 Tromso, NORWAY STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X99772 BASE COUNT 550 a 392 c 340 g 387 t 9106 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~uG C--------- ----cuaaca 301 |GCu--AGC| CUC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 CAA(AUCA)U UUU------- ---------- ---------- ---------- --------ac 901 ------(--- --)------- |ccc-cugA- -GUAC-G(-G GCGA)CAGAA -aagga---- 961 -------<-- --gaa----- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGAGCAAC AGAC-AA--- ---AGUACC( -GCAA-)GGG ---AAC-GC- 1681 ugaaaaagaa augaaauaaa ccauu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGCA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuuucua 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaaa--cua 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agcc->---- --(------) ---------- ---------- -cuuuaguuu 2701 gua-acCCCG AA-ACUGA-G CG-AGCUACU CCA-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ---------- 2821 -GGGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUU- UGAGUAG-AG 2881 GU(G-ACAA) ACC-UACC-G A-GCCCAGUU AUAGCU-GGU UGCCU--GUG AA-AUG-AAU 2941 (-AGGA)GUU CA-GC-CCUU UAAG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ucuuuccccc 3121 cuca-----c ccaugcuuac gcuaaaa--- ---------- ---------- ---------- 3181 ----uugauu aaggaaa--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-A -AAGG-CGUU AAUCA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UG-AU----- -aGAAG(AAA -CAA)CUU-u aacag-g-ug -accCAA--- 3541 --gaucauau uacccaa-g- gauuu----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------caaa u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -UCUU|-(au -c)a|GAAAG C(--GUUAAA )GC|-UCAa- auua--<--- 3841 ---gccuaua uccucauaua cugauauuac ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|au cucc--cuc| c--c-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----ccccuu aCCAG-GC|- UG-UCUUAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUAAGAACA AUUAUGC-UA 4681 AA|AUGAGUA -AUAA-GAA- gaa------- (-uuuaauuc ---------- ---------- 4741 ---------- -----)---- --uuc-|ucc u----a-GCA CAU--gugua a|----gucg 4801 gaac----gg ---------- ----(--acc uc)c-c|--a ccgacu---- ---------- 4861 ---auuaau- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 --------cc ccaaacccag aggguaauag gucaaaaaaa caagaaaaac accuauuuua 5761 ua-------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACA)G G|uGUGC--- ----(cuaa- ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAGA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|c-- ---------- ---------- (--uccaaaa ------)--- ---------- 6901 ------aUA- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua uaa)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCAUC A-CGAGGGCU 7261 UA-------- ---------- -------GCU GUCUCCCAUC UCCA-GU-CA ----AUGAAA 7321 UU|G|ACCUC CC-CG(U-GC AGAGG)CGGG GAU----AAU UACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGA CC|--u-aaa gua--agu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------cacg uuuaa-caug 7561 cu-gugauaa caguaaaaac uuagugauau u--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-acug -aag--U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|GCGGGG(- --------UA AAACACAAC- )CCCC-AU|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 gggauauuau cccuaau--- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- acuca-gag( ccuucuua-- )cucca-agu -aacagaaau ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---uuuuc UGAUC-cggu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au a-)--|---A 9001 CCGAUCAAC- |GAA-CCGAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCUCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- --acaagcu- 9301 >--------- ---------- --c-UUU-UU CC--(-AGU- AC(-GAAA)G GACC-)GGAA 9361 A--AA-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc -uc------- ---------- -------ccc 9601 ---------- --uaaccgcu (gaaacc--c aauaa)a-gc -gg-auaagg g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 ca-(aaaaga a--)-ugggu gu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.mykis 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Oncorhynchus mykiss. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Oncorhynchus mykiss. ORGANISM mitochondrion Oncorhynchus mykiss. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L29771 LOCUS ONHMTCG 16660 bp ds-DNA Circular VRT 22-MAR-1994 DEFINITION Oncorhynchus mykiss mitochondrion complete genome. ACCESSION L29771 KEYWORDS complete genome. SOURCE Mitochondrion Oncorhynchus mykiss (organelle Mitochondrion Oncorhynchus mykiss) adult liver DNA. ORGANISM Mitochondrion Oncorhynchus mykiss Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Salmoniformes; Salmonoidei; Salmonidae. REFERENCE 1 (bases 1 to 16660) AUTHORS Zardoya,R., Bautista,J.M. and Garrido-Pertierra,A. TITLE The complete nucleotide sequence of the mitochondrial DNA of the Rainbow trout, Oncorhynchus mykiss JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 463153 FEATURES Location/Qualifiers D-loop 1..1003 /note="control region" tRNA 1004..1071 /anticodon=(pos:1034..1036,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1072..2015 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2016..2087 /anticodon=(pos:2049..2051,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2088..3767 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3768..3843 /anticodon=(pos:3804..3806,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" tRNA 4819..4890 /anticodon=(pos:4851..4853,aa:Ile) /product="transfer RNA-Ile" /gene="tRNA-Ile" /note="putative" tRNA complement(4888..4958) /anticodon=(pos:4924..4926,aa:Gln) /product="transfer RNA-Gln" /gene="tRNA-Gln" /note="putative" tRNA 4958..5026 /anticodon=(pos:4988..4990,aa:Met) /product="transfer RNA-Met" /gene="tRNA-Met" /note="putative" tRNA 6079..6147 /anticodon=(pos:6111..6113,aa:Trp) /product="transfer RNA-Trp" /gene="tRNA-Trp" /note="putative" tRNA complement(6149..6217) /anticodon=(pos:6185..6187,aa:Ala) /product="transfer RNA-Ala" /gene="tRNA-Ala" /note="putative" tRNA complement(6219..6291) /anticodon=(pos:6257..6259,aa:Asn) /product="transfer RNA-Asn" /gene="tRNA-Asn" /note="putative" rep_origin complement(6292..6328) /standard_name="OriL" /note="Origin of L-strand replication; putative" tRNA complement(6329..6395) /anticodon=(pos:6365..6367,aa:Cys) /product="transfer RNA-Cys" /gene="tRNA-Cys" /note="putative" tRNA complement(6396..6466) /anticodon=(pos:6432..6434,aa:Tyr) /product="transfer RNA-Tyr" /gene="tRNA-Tyr" /note="putative" tRNA complement(8019..8089) /anticodon=(pos:8055..8057,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(UCN); putative" tRNA 8094..8166 /anticodon=(pos:8129..8131,aa:Asp) /product="transfer RNA-Asp" /gene="tRNA-Asp" /note="putative" tRNA 8872..8945 /anticodon=(pos:8906..8908,aa:Lys) /product="transfer RNA-Lys" /gene="tRNA-Lys" /note="putative" tRNA 10561..10630 /anticodon=(pos:10592..10594,aa:Gly) /product="transfer RNA-Gly" /gene="tRNA-Gly" /note="putative" tRNA 10981..11049 /anticodon=(pos:11011..11013,aa:Arg) /product="transfer RNA-Arg" /gene="tRNA-Arg" /note="putative" tRNA 12721..12789 /anticodon=(pos:12751..12753,aa:His) /product="transfer RNA-His" /gene="tRNA-His" /note="putative" tRNA 12790..12858 /anticodon=(pos:12817..12819,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(AGY); putative" tRNA 12860..12931 /anticodon=(pos:12893..12895,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="(CUN); putative" tRNA complement(15307..15375) /anticodon=(pos:15343..15345,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Glu" /note="putative" tRNA 16520..16591 /anticodon=(pos:16552..16554,aa:Thr) /product="transfer RNA-Thr" /gene="tRNA-Thr" /note="putative" tRNA complement(16591..16660) /anticodon=(pos:16627..16629,aa:Pro) /product="transfer RNA-Pro" /gene="tRNA-Pro" /note="putative" source 1..16660 /organism="Mitochondrion Oncorhynchus mykiss" /mitochondrion="Mitochondrion Oncorhynchus mykiss" /cell_type="hepatocyte" /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="liver" CDS 3844..4815 /gene="NADH-1" /note="putative; NCBI gi: 463154." /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MITLITHVINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNI VGPYGLLQPIADGLKLFIKETVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVTD LNLGVLFVLALSSLAVYSILGSGWASNSKYALIGELRAVAQTISYEVSLGLILLSVII ITGGFTLQTFNVAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNV EYAGGPFALFFLAEYANILLMNTLSAVLFLGASHIPAFPELTALNLMTKAALLSVVFL WVRASYPRFRYDQLMHLVWKSFLPLTLALVLWHLALPIALAGLPPQL" CDS 5027..6076 /gene="NADH-2" /note="putative; NCBI gi: 463155." /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLTILLSSLGLGTVLTFASSHWLLAWMGLEINTLAIIPIM AQQHHPRAIEATTKYFLTQATAAAMILFASTTNAWLVGEWEIHQLSHPLATTTVMLAL ALKLGLAPVHFWLPEVLQGLELTTGLILSTWQKLAPFALMIQVAPTINSSLLVTIGLL STLVGGWGGLNQTQLRKILAYLPIAHLGWMVLILQFAPSLTLLSLSLYIVMTSSAFLT LKTNNSLTINTLATSWTKSPTLAALTALVLLSLGGLPPLSGFMPKWLILQELTKQGLP LSATLAAMTALLSLYFYLRLCYALTLTIYPNTLTATAPWRLNFTMITLPLSITTIMAL GLLPLTPAVTAMLAL" CDS 6468..8018 /transl_except=(pos:6468..6470,aa:Met) /gene="COI" /note="putative; NCBI gi: 463156." /product="cytochrome oxidase subunit 1" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQP GALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLSSSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILG AINFITTIINMKPPAISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFSHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGA FVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLVSLVAVIMFLFILWEAFAAKREVASIELTSTNVEWLHGCPPPYHTFEEP AFVQVQAN" CDS 8181..8871 /gene="COII" /note="putative; NCBI gi: 463157." /product="cytochrome oxidase subunit 2" /codon_start=1 /translation="MAHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVA MVSTKLTNMYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPVESPIRVLVSAEDVL HSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEH FEKWSTMMLEDA" CDS 8947..9114 /gene="ATPase8" /note="putative; NCBI gi: 463158." /product="adenosine triphosphatase subunit 8" /codon_start=1 /translation="MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEK AKPEPWNWPWH" CDS 9105..9776 /gene="ATPase6" /note="putative; NCBI gi: 463159." /product="adenosine triphosphatase subunit 6" /codon_start=1 /translation="MTLSFFDQFMSPTYLGIPLIAVALTLPWILFPTPSARWLNNRLI TLQGWFINRFTQQLLLPLNLGGHKWAALLTSLMLFLITLNMLGLLPYTFTPTTQLSLN MGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPALGVRL TANLTAGHQLIATAAFVLLPMMPTVAILTSIVLFLLTLLEIAVAMIQAYVFVLLLSLY LQENV" CDS 9776..10561 /gene="COIII" /note="putative; NCBI gi: 463160." /product="cytochrome oxidase subunit 3" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIAALLLTSGTAVWFHFHSLTLLT LGNILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HASLAPTPELGGCWPPAGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQTI QALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVC LLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10631..10979 /gene="NADH-3" /note="putative; NCBI gi: 463161." /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLITTIITITITLSAVLATISFWLPQISPDAEKLSPYECGFDP LGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLHTPTLTLIWSTAVLALLTLG LIYEWTQGGLEWAE" CDS 11050..11346 /gene="NADH-4L" /note="putative; NCBI gi: 463162." /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIAL SLWALQMEATGYSVAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC" CDS 11340..12720 /gene="NADH-4" /note="putative; NCBI gi: 463163." /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKILIPTLMLFPTIWLSPAKWLWTTSIAQSLIIALASLSWLKW SSETGWSSSNLYLATDPLSTPLLVLTCWLLPLMILASQSHLSPEPLNRQRAYISLLVS LQTFLVLAFGATEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLMQNDNGTLSMFTLQYTQPLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLP KAHVEAPIAGSMILAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIVLALWGIIMTGSI CLRQTDLKSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTS YERTHSRTMLLARGMQMILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYW TLILTGLGTLITASYSLYLFLMTQRGPLPSHIIALEPTHTREHLLIILHLIPIVLLIL KPELMWGWCF" CDS 12932..14770 /gene="NADH-5" /note="putative; NCBI gi: 463164." /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTTLILSSSLLMIFTLLIYPLITTLTPTPQHKNWALTHVKTA IKMAFLVSLLPLFVFLDQGTETIVTNWQWMNTTTFDINLSFKFDHYSIIFTPIALYVT WSILEFASWYMHADPNMNRFFKYLLLFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI GWWHGRADANTAAMQAVIYNRVGDIGLILSMAWFATNLNSWEIQQMFASSKGLDLTLP LMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMEDN QTALTVCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHNLTPSTSSCLTIGSLALTGTPFL AGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAIYSLRVIFFVSMGHPRFTATAPVN ENNPSVINPIKRLAWGSIIAGLLITSNFLPTNTPVMTMPTHLKLAALLVTISGLLIAL ELASLTNKQFKLHPTLTLHNFSNMLGFFPAIIHRLTPKLNLTLGQTIASQMVDHTWFE KVGPKELFQLTCLMVTTTSNIQQGMIKTYLTLFFLSTTLAVLLTLT" CDS complement(14767..15306) /gene="NADH-6" /note="putative; NCBI gi: 463165." /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLFLLGLVLGLVAVASNPAPYFAALGLVVAAGVGCGVLV GHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGDRSVLGDRSVLGYVVVYTV GVVLVAGLFWGGWYETSWVAVDEFKEFSVLRGDTSGVALMYSHGGGMLIACAWVLLLT LFVVLELTRGLSRGALRAV" CDS 15379..16519 /gene="Cyt b" /note="putative; NCBI gi: 463166." /product="cytochrome b" /codon_start=1 /translation="MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLATQ ILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGL YYGSYLYKETWNIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGAL VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVLHLLFLHETGSNNPAGINSDADKI SFHPYFSYKDLLGFVAMLLGLTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWALVADMLI LTWIGGMPVEHPFIIIGQVASVIYFTIFLVLSPLAGWAEIKALQWA" BASE COUNT 4642 a 4818 c 2840 g 4360 t ORIGIN BASE COUNT 538 a 430 c 384 g 328 t 9095 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----ugacua 301 |GCU--AGC| CAA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UCAA 841 CAA(ACCA)U UUU------- ---------- ---------- ---------- --------uc 901 ------(--- --)------- |cac-cuUA- -GUAG-G(-G GCGA)CCGAA -Aagga---- 961 -------<-- --gauaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-UGAGCAAC AGAA-AA--- ---AGUACC( -GCAA-)GGG ---GAA-GC- 1681 UGaaagagaa uugaaauaac ccauu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCaca--cc- 2101 ugagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuuaguuu 2701 agg-ccCCCG AA-ACUAG-A CG-AGCUACU CCG-GGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auugua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --CGAGCCC- CGAGUAG-AG 2881 GU(G-AUAA) ACC-UAUC-G A-GCCUAGUU AUAGCU-GGU UGCUU--AGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CCCC CGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuucuuagga 3121 ccuu-----a agguaaaacu aauauug--- ---------- ---------- ---------- 3181 ----ucccaa agaaa----- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CC-A -GGAG-AGUU AGUCA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UG-AA----- -cAAGG(ACA -CAA)CCU-u aacag-g-cg -gc-UAA--- 3541 --ggaucaua guuccaa-g- guaac----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ACAGU-G GGC(CUAAGA 3781 GC-A)-GCCA -CCUG|C(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --auacaaac cucuuauccu gauaagaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ccac--ccc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----accgu aCUAA-GC|- CG-UUCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -AUAA-GAG- agu------- (-aca----- ---------- ---------- 4741 ---------- -----)---- --acu-|cuc u-ccca-GCA CAU--gugua a|----gucg 4801 gacc----gg ---------- ----(--acc cc)c-c|--a ccgaca---- ---------- 4861 ---aauaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaacca agagggaacu guaggccaga acaaacacca agaaaaaccu 5761 acaccaacaa a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UACCCC- -(CACACA)G G|AGUGC--- ----(ccc-a a-----)--- ----gggaa| 6541 |---AGAC-C C--AAAGGAA -GAGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|c-- ---------- ---------- (aaauca--- ------)--- ---------- 6901 ------aaa- CAUAGAGGU- CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua ugg)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCAUC A-CGAGGGCU 7261 UA-------- ---------- -------GCU GUCUCCUCUU CCAA-GU-CA ----AUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAG CACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGA CA|--c-cag gca--ga--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --agc-c-ca -ua---U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|GCGGGG(- --------GG AAAAUUAAG- )CCCC-CA|C |u|gu---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- --ggacuggg 8341 gggc--acu- gcccc----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ------acca gccga-gag( -cuacag--- )cucua-agc accagaauau cug------- 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------g aa)--|---c 9001 gcaUUCAAC- |GGA-CCGAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCCU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----aagug- 9301 >--------- ---------- --A-UGU-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--GA-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccc 9601 ---------- ---accugau (gaaggc--a acuaa)a-ac -ag-acaagg g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cu-(aaaaga a--)-cggcg c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.salar 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Salmo salar. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Salmo salar. ORGANISM Mitochondrion Salmo salar. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U12143 LOCUS SSMITOCH1 2841 bp DNA VRT 07-FEB-1996 DEFINITION Salmo salar mitochondrion tRNA-Phe, 12S rRNA, tRNA-Val, 16S rRNA, and tRNA-Leu genes, NADH-ubiquinone oxidoreductase subunit 1 gene, partial cds. ACCESSION U12143 NID g1181629 KEYWORDS . SEGMENT 1 of 4 SOURCE Atlantic salmon. ORGANISM Mitochondrion Salmo salar Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmo. REFERENCE 1 (bases 1 to 2841) AUTHORS Hurst,C.D., Bartlett,S.E. and Davidson,W.S. TITLE Mitochondrial DNA sequence of Atlantic salmon (Salmo salar) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2841) AUTHORS Hurst,C.D. TITLE Direct Submission JOURNAL Submitted (09-JUL-1994) Carolyn D. Hurst, Norwood Laboratory, School of Chemical and Life Sciences, University of Greenwich, Wellington Street, Woolwich, London, SE18 6PF COMMENT NCBI gi: 1181629 FEATURES Location/Qualifiers source 1..2841 /clone="CH52" /mitochondrion /organism="Salmo salar" /tissue_type="liver" tRNA 1..68 /anticodon=(pos:31..33,aa:Phe) /product="tRNA-Phe" rRNA 69..1016 /product="12S rRNA" tRNA 1017..1087 /anticodon=(pos:1049..1051,aa:Val) /product="tRNA-Val" rRNA 1088..2759 /product="16S rRNA" tRNA 2760..2832 /anticodon=(pos:2794..2796,aa:Leu) /product="tRNA-Leu" CDS 2833..>2841 /note="NCBI gi: 1181634" /codon_start=1 /transl_table=2 /product="NADH-ubiquinone oxidoreductase subunit 1" /db_xref="PID:g1181634" BASE COUNT 908 a 736 c 631 g 562 t 4 others ORIGIN BASE COUNT 553 a 422 c 367 g 328 t 9105 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----ugacua 301 |GCu--AGC| CAA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UCAA 841 CAA(ACCA)U UUU------- ---------- ---------- ---------- --------uc 901 ------(--- --)------- |cac-cuuA- -GUAC-G(-G GCGA)CGGAA -aagga---- 961 -------<-- --aacaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-UGAGCAAC AGAA-AA--- ---AGUACC( -GCAA-)GGA ---AAG--C- 1681 ugaaagagaa augaaacaac ccauu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCaaa--cc- 2101 cgagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuuaguuc 2701 ag--gcCCCG AA-ACUAG-A CG-AGCUACU C-C-GGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auuaua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGA- --CGAGCCC- CGAGUAG-AG 2881 GU(G-ACAA) ACC-UAUC-G A-GCCUAGUU AUAGCU-GGU UGCUU--AGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CCCC UGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuucuuagga 3121 ccuc-----a agguaaaacu aaccuug--- ---------- ---------- ---------- 3181 ----ucccaa agaaa----- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CC-A -AGAG-AGUU AAUCA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UG-AA----- -cAAGG(ACA -CAA)CCU-u aacag-g-cg -gc-UAA--- 3541 --ggaucaua auuacua-a- ggcaac---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ACAGU-G GGC(CUAAGA 3781 GC-A)-GCCA -CCUG|-(ca -u)a|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 ---auauaag ccucuuaucc ugauaaaaaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc cuac--ccc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----accgu aCUAA-GC|- CG-UUCCAUG ---------- 4501 ---------- ---------- (cuca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGCG AUUAUGC-UA 4681 GA|AUGAGUA -AUAA-GAG- agg------- (-acaac--- ---------- ---------- 4741 ---------- -----)---- --ucuc|ucc c----a-GCA CAU--gugua a|----gucg 4801 gacc----gg ---------- ----(--acc cg)c-c|--a ccgaca---- ---------- 4861 ---aauaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------a cccaagccaa gagggaacug uagcccagaa caaauaccga gaaaaaccua 5761 caucaacaaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACA)G G|AGUGC--- ----(ucaca ------)--- ----gggaa| 6541 |---AGAC-C U--AAAGGAA -GAGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|U-- ---------- ---------- (aaaucaaa- ------)--- ---------- 6901 ------ACA- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua ugg)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCAUC A-CGAGGGCU 7261 UA-------- ---------- -------GCU GUCUCCUCUU CCAA-GU-CA ----AUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAA CACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGA CA|--c-cag gca--gau-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---cacguca aguaa-ccuu 7561 ga-auuaaca aguaaaaacg cagugacccc u--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----a-gccc -aua--U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|GCGGGG(- --------GA AAACAAAGC- )CCCC-AU|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggggcacu-- gccac----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------a accaa-gag( -ucacaa--- )cucua-agu -accagaauu ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------auc ac)--|---G 9001 CCGAUCAAC- |GGA-CCGAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCU- )AUCGACGAG --GGG-UUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----aagug 9301 >--------- ---------- --a-Ugu-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--gA-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc -au------- ---------- -------ccc 9601 ---------- --caccugau (gaaggc--a acuaa)a-ac -ag-aaaagg g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(aaaaga a--)-cggnn ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (13)-lobe 10775 bp RNA RNA 09-JAN-1999 DEFINITION lobe-finned fish and tetrapod clade. ACCESSION No information KEYWORDS No information. SOURCE lobe-finned fish and tetrapod clade. ORGANISM lobe-finned fish and tetrapod clade. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (14)-Coela 10775 bp RNA RNA 09-JAN-1999 DEFINITION Coelacanthiformes. ACCESSION No information KEYWORDS No information. SOURCE Coelacanthiformes. ORGANISM Coelacanthiformes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.L.cha.1 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Latimeria chalumnae. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Latimeria chalumnae. ORGANISM mitochondrion Latimeria chalumnae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21921 ID MTLC12SRA standard; DNA; ORG; 2734 BP. XX AC Z21921; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE L.chalumnae mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Latimeria chalumnae OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Coelacanthiformes; Latimeriidae. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX RN [2] RP 1-2734 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX FH Key Location/Qualifiers FH FT source 1..2734 FT /organism="Latimeria chalumnae" FT /mitochondrion FT rRNA 1..975 FT /product="12S rRNA" FT /citation=[1] FT tRNA 976..1042 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1043..2705 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2706..2734 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2734 BP; 997 A; 676 C; 505 G; 556 T; 0 other; BASE COUNT 614 a 392 c 297 g 360 t 9112 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uauaua 301 |GCU--AGG| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AACC 841 UAA(ACCA)U UUA------- ---------- ---------- ---------- --------c- 901 ------(--- --)------- |cau-ccAA- -GUAU-A(-G GCGA)UAGAA -Aagac---- 961 -------<-- --ac------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCACAAU AGUA-AA--- ---AGUACC( -GCAA-)GG- ---AAC-GC- 1681 UGaaaaagaa augaaacaac ucgua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA CCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUU)AUGA |UCU-AGUUA GAccc--ac- 2101 cgggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuaagucc 2701 aac-ccCCCG AA-ACUAA-G UG-AGCUACU UCG-AAA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auga) ---------- 2821 -GGGCAAA-C CC-UUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAUUUC- CAAGUAG-AG 2881 GC(G-AUAA) ACC-UAAC-G A-GCUUAGUG AUAGCU-GGU UAUUC--GAG AA-AUG-AUU 2941 (-UUUA)GUU CA-GC-CCCU CGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuccaaaccc 3121 uaac-----a acauaaaacc aauguga--- ---------- ---------- ---------- 3181 ----gc---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CA-G -AGAG-AGUU AUUCA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AA----- -aAAGG(ACA -CAA)CCU-u cuaagac-ag -ga-UAA--- 3541 --ag-acuau auuaacu-c- aaggaucag- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CAAGU-G GAC(CUAAAA 3781 GC-A)-GUCA -CCU-|-(-- aa)-|AAAAG C(--GUUAAA )GC|-UUAa- gcag--<--- 3841 --cacuaaac caaccuauac uaauaaauuu aa-------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|cc ucau--ucc| a--c-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----ucacu aUCGA-AU|- UA-UUCUAU- ---------- 4501 ---------- ---------- (augc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGAA UAAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAA- ggc------- (-cauuaa-- ---------- ---------- 4741 ---------- -----)---- --gcc-|uuc ucuaacuGCA UAA--gugua c|----auca 4801 gauu----ag ---------- ----(--auu aa)c-c|--a cugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------c uucaaagaga auacuaugac auaaaaca-- ---------a gaaaagcaca 5761 cacacccaca ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UAAUCC- -(AACACA)G G|AAUGC--- ----(aac-c ------)--- ----acgaa| 6541 |---AGAU-U A--AAAGAAA -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )-------cu aUAAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCCG|C-- ---------- ---------- (caacaacag aa----)--- ---------- 6901 ------GUA- UUG-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aag)------ ---------- ---------| 7141 ---AUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCGAA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCACC A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCUCUU UCCA-AU-CA ----GUAAAA 7321 UU|G|AUCUG UC-CG(U-GC AGAAG)CGGA CUU----AAC UACAUUAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUC--AGA CA|--c-aaa gcc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cuac --a--aauaa acacu-uaga 7561 ua-auaaauu gauaaaacca -guagccuaa uacu------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --ggc-c-cu -au---U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAACAAUC- )CUCC-AA|G |c|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------auu 8341 gguaccaccu guacua---- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acaaa-ggg( -uaacac--- )cccaa-agu aauaaaaauu uu-------- 8821 ---------- ---------- ---------- ---------- ---------- --------au 8881 c|---ggaca UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----aacua aa)--|---C 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUUUCCAAG 9061 AG(U--CCAA )AUCGACGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CAUU GG-UG(--UA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ---acuau-- 9301 >--------- ---------- --G-UCUcUU CC--(UAGU- AC(-GAAA)G GACC-)GGGG 9361 A--AA-- aaggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- guac-gccuu acc------- ---------- -------uau 9601 ---------- --aauuuaau (gcacgu--a acuaa)a-uu -aa--uaauu a--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 uc-(aaaaca a--)-gagaa c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.cha.2 10775 bp RNA RNA 02-APR-1997 DEFINITION Mitochondrion Latimeria chalumnae.; . ACCESSION U82228 KEYWORDS . SOURCE Mitochondrion Latimeria chalumnae. ORGANISM Mitochondrion Latimeria chalumnae. REFERENCE 1 (bases 1 to 16407) AUTHORS Zardoya,R. and Meyer,A. TITLE of the coelacanth, Latimeria chalumnae and the phylogenetic relationships among living sarcopterygians The complete nucleotide sequence of the mitochondrial genome JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16407) AUTHORS Zardoya,R. TITLE Direct Submission JOURNAL Submitted (13-DEC-1996) Ecology & Evolution, State University of New York, 662 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U82228 BASE COUNT 619 a 396 c 302 g 348 t 9110 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uauaua 301 |GCU--AGg| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AACC 841 UAA(ACCA)U UU-------- ---------- ---------- ---------- --------ac 901 ------(--- --)------- |cau-ccAA- -GUAU-A(-G GCGA)UAGAA -Aaga----- 961 -------<-- --cacca--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --GGCACAAU AGUA-AA--- ---AGUACC( -GCAA-)GGG ---AAC-GC- 1681 UGaaaaagaa augaaacaac ucgua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA CCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUU)AUGA |UCU-AGUUA GAccc-cac- 2101 cgggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuaagucc 2701 aac-ccCCCG AA-ACUAA-G UG-AGCUACU UCG-AAA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auga) ---------- 2821 -GGGCAAA-C CC-UUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAUUUC- CAAGUAG-AG 2881 GC(G-AUAA) ACC-UAAC-G A-GCUUAGUG AUAGCU-GGU UAUUC--GAG AA-AUG-AUU 2941 (-UUUA)GUU CA-GC-CCCU CGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuccaaaccc 3121 uaac-----a acauaaaacc aau-gug--- ---------- ---------- ---------- 3181 ----a----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -----gCCAG -AGAG-AGUU AUUCA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AA----- -aAAGG(ACA -CAA)CCU-u cuaagac-ag -ga-UAA--- 3541 --agacuaua uuaacuc-a- aggaucag-- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CAAGU-G GAC(CUAAAA 3781 GC-A)-GUCA -CCU-|-(-- AA)-|AAAAG C(--GUUAAA )GC|-UUAa- gcag--<--- 3841 --cacuaaac caaccuauac uaauaaauuu aa-------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|cc ucau--ucc| a--c-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----ucacu aUCGA-AU|- UA-UUCUAU- ---------- 4501 ---------- ---------- (augc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGAA UAAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAa- ggc------- (-cauuaa-- ---------- ---------- 4741 ---------- -----)---- --gcc-|uuc ucuaacuGCA UAA--gugua c|----auca 4801 gauu----ag ---------- ----(--auu aa)c-c|--a cugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- --cuuca--a agagaauacu --augacaua --aaa---ca agaaaagcac 5761 acacgcccac a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg----- 6481 -u-UAAUCC- -(AACACA)G G|AAUGC--- ----(aac-c ------)--- ----acgaa| 6541 |---AGAU-U A--AAAGAAA -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )-------cu aUAAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCCG|C-- ---------- ---------- (caacaacag aa----)--- ---------- 6901 ------GUA- UUG-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aag)------ ---------- ---------| 7141 ---AUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCGAA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCACC A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCUCUU UCCA-AU-CA ----GUAAAA 7321 UU|G|AUCUG UC-CG(U-GC AGAAG)CGGA CUU----AAC UACAUUAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUC--AGA CA|--c-aaa gcc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cuac aaauaaacac uuagauaaua 7561 aauugau-a- aaac--cagu agccuaauac u--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --ggc-c-cu -au---U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAACAAUC- )CUCC-AA|G |c|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------auu 8341 gguaccaccu guacua---- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acaaa-ggg( -uaacac--- )cccaa-agu aauaaaaauu uu-------- 8821 ---------- ---------- ---------- ---------- ---------- --------au 8881 c|---ggaca UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----gacua aa)--|---C 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUUUCCAAG 9061 AG(U--CCAA )AUCGACGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CAAU GG-UG(--AA -GC)CGCUAU UAAA-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----auguu- 9301 >--------- ---------- --A-AUU-CU CC--(CAGU- AC(-GAAA)G GACC-)GGAG 9361 A--AC-- ugagcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcuca ucu------- ---------- -------uca 9601 ---------- ---accugau (gaaaac--a acuaa)a-ac -ag-auaaag a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cg-(uaaaca a--)-cgggc aau~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (14)-Dipno 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.N.for.1 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Neoceratodus foresteri. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Neoceratodus foresteri. ORGANISM mitochondrion Neoceratodus foresteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21927 ID MTNF12SRB standard; DNA; ORG; 2730 BP. XX AC Z21927; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 3) XX DE N.forsteri mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Neoceratodus foresteri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes; Ceratodidae. XX OG Mitochondrion XX RN [2] RP 1-2730 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2730 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Neoceratodus foresteri" FT /mitochondrion FT rRNA 1..951 FT /product="12S rRNA" FT /citation=[1] FT tRNA 952..1022 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1023..2701 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2702..2730 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2730 BP; 989 A; 633 C; 530 G; 574 T; 4 other; BASE COUNT 634 a 372 c 311 g 360 t 9098 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uaaacu 301 |GCU--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(ACCA)U UCA------- ---------- ---------- ---------- --------cu 901 ------(--- --)------- |aau-caGA- -GUAU-G(-G GCGA)CAGAA -Aacga---- 961 -------<-- --accua--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGCGCCAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 UGaaaaagaa augaaaaacc aauu------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-CAAA GUAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auauaaa 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGG |UCU-AGCAA GUcaa--cc- 2101 ugggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agug->---- --(------) ---------- ---------- -cuuaagucc 2701 aac-ucCCCG AA-ACUAG-G CG-AGCUACU UCG-AGA-CA GCUU------ ---------- 2761 -(-------- ---------- ---------- ---------- --aaauaua) ---------- 2821 -GAGCCAA-C CC-GUCCCU( GUGGCAA-A) AGGUGUGGGA --AGAUCUC- CAAGUAG-GG 2881 GU(G-ACAG) ACC-UAAC-G A-GCCUAGUU AUAGCU-GGU UGCUC--GGG AA-AUG-AAU 2941 (-AUUA)GUU CA-AC-UUUA AAAC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccuccacuua 3121 cuaa-----a caaguaacaa cuaacca--- ---------- ---------- ---------- 3181 ----ucaaac uaaguaguaa g--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AUAU AUUUA--AA- AG-AG(-GGA 3481 CAG)CUCUUU UA-AA----- -cGAGG(ACA -CAA)CCU-u aaaaa-u-ug -gg-UAA--- 3541 --agaucaua cuaaaag-a- agaauc---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------gcgc u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCGU|A(A- AA)-|GAAAG C(--GUUACA )GC|-UCAa- guac--<--- 3841 --auaacuuc uacaaauaau gauacucaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucaa--ccc| g--c-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaacu aCUGA-GC|- UA-ACUUAUA ---------- 4501 ---------- ---------- (aaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AUAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAA- g--------- (-aagcc--- ---------- ---------- 4741 ---------- -----)---- ----c-|uuc u-ccga-GCA UAG--gugua a|----auca 4801 aaac----gg ---------- ----(--acu ac)c-c|--a uugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ccccacgaag gaaguauaac gacucauaa- ----aacaca agaaaaccaa 5761 aucaaaacaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UAACAC- -(CACACA)G U|AAUGC--- ----(aac-c a-----)--- ----aggaa| 6541 |---AGGU-U A--AACAAUG -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAACCC|C CC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aaauaucag ac----)--- ---------- 6901 ------GUA- UUA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aua)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGnGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUU 7261 CA-------- ---------- -------ACU GUCUCCCCCA UUUU-AC-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGG CAU----AAA ACCAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAA UU|--acuaa ugc--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--acugc -guaagaaag cuaua-cugc 7561 uu-uuaaagc uaaaaacaua -gcaaaca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uag-c-au -ua---A-CU UUUUGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------AA AAAAAAAUC- )CUCC-GC|A |a|cu---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- --aaacaggg u-auu--acc 8341 cu-------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------ga aauaa-ggg( -cgacag--- )cccaa-aau aacagaacau cu-------- 8821 ---------- ---------- ---------- ---------- ---------- ---------g 8881 a|---cauaa AGAUC-caga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua uu)--|---U 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUCUAAG 9061 AG(U--CCAU )AUCGACGAA --AGGGCUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAGU GG-UG(--CA -GC)CGCUAC UAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -uucaaacc- 9301 >--------- ---------- --U-AUn-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--GU-- gaggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- cuau-gccuc acc------- ---------- -------cac 9601 ---------- ---acccaau (gaaauu--a acuaa)a-au -aa-cauaau g--------- 9661 ---------- ---------| ------(--- )--------- -------|ga 9961 ccc(aagaca ---)agguua a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.for.2 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Neoceratodus foresteri. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Neoceratodus foresteri. ORGANISM mitochondrion Neoceratodus foresteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21926 ID MTNF12SRA standard; DNA; ORG; 2730 BP. XX AC Z21926; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 3) XX DE N.forsteri mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Neoceratodus foresteri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes; Ceratodidae. XX OG Mitochondrion XX RN [2] RP 1-2730 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2730 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Neoceratodus foresteri" FT /mitochondrion FT rRNA 1..951 FT /product="12S rRNA" FT /citation=[1] FT tRNA 952..1022 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1023..2701 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2702..2730 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2730 BP; 989 A; 633 C; 530 G; 574 T; 4 other; BASE COUNT 634 a 372 c 311 g 360 t 9098 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uaaacu 301 |GCU--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(ACCA)U UCA------- ---------- ---------- ---------- --------cu 901 ------(--- --)------- |aau-caGA- -GUAU-G(-G GCGA)CAGAA -Aacga---- 961 -------<-- --accua--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGCGCCAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 UGaaaaagaa augaaaaacc aauu------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-CAAA GUAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auauaaa 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGG |UCU-AGCAA GUcaa--cc- 2101 ugggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agug->---- --(------) ---------- ---------- -cuuaagucc 2701 aac-ucCCCG AA-ACUAG-G CG-AGCUACU UCG-AGA-CA GCUU------ ---------- 2761 -(-------- ---------- ---------- ---------- --aaauaua) ---------- 2821 -GAGCCAA-C CC-GUCCCU( GUGGCAA-A) AGGUGUGGGA --AGAUCUC- CAAGUAG-GG 2881 GU(G-ACAG) ACC-UAAC-G A-GCCUAGUU AUAGCU-GGU UGCUC--GGG AA-AUG-AAU 2941 (-AUUA)GUU CA-AC-UUUA AAAC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccuccacuua 3121 cuaa-----a caaguaacaa cuaacca--- ---------- ---------- ---------- 3181 ----ucaaac uaaguaguaa g--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AUAU AUUUA--AA- AG-AG(-GGA 3481 CAG)CUCUUU UA-AA----- -cGAGG(ACA -CAA)CCU-u aaaaa-u-ug -gg-UAA--- 3541 --agaucaua cuaaaag-a- agaauc---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------gcgc u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCGU|A(A- AA)-|GAAAG C(--GUUACA )GC|-UCAa- guac--<--- 3841 --auaacuuc uacaaauaau gauacucaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucaa--ccc| g--c-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaacu aCUGA-GC|- UA-ACUUAUA ---------- 4501 ---------- ---------- (aaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AUAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAA- g--------- (-aagcc--- ---------- ---------- 4741 ---------- -----)---- ----c-|uuc u-ccga-GCA UAG--gugua a|----auca 4801 aaac----gg ---------- ----(--acu ac)c-c|--a uugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ccccacgaag gaaguauaac gacucaua-- ---aaacaca agaaaaccaa 5761 aucaaaacaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UAACAC- -(CACACA)G U|AAUGC--- ----(aac-c a-----)--- ----aggaa| 6541 |---AGGU-U A--AACAAUG -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAACCC|C CC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aaauaucag ac----)--- ---------- 6901 ------GUA- UUA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aua)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGnGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUU 7261 CA-------- ---------- -------ACU GUCUCCCCCA UUUU-AC-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGG CAU----AAA ACCAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAA UU|--acuaa ugc--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--acugc -guaagaaag cuaua-cugc 7561 uu-uuaaagc uaaaaacaua -gcaaaca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uag-c-au -ua---A-CU UUUUGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------AA AAAAAAAUC- )CUCC-GC|A |a|cu---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- --aaacaggg u-auu--acc 8341 cu-------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------ga aauaa-ggg( -cgacag--- )cccaa-aau aacagaacau cu-------- 8821 ---------- ---------- ---------- ---------- ---------- ---------g 8881 a|---cauaa AGAUC-caga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua uu)--|---U 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUCUAAG 9061 AG(U--CCAU )AUCGACGAA --AGGGCUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAGU GG-UG(--CA -GC)CGCUAC UAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -uucaaacc- 9301 >--------- ---------- --U-AUn-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--GU-- gaggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- cuau-gccuc acc------- ---------- -------cac 9601 ---------- ---acccaau (gaaauu--a acuaa)a-au -aa-cauaau g--------- 9661 ---------- ---------| ------(--- )--------- -------|ga 9961 ccc(aagaca ---)agguua a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.parad 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lepidosiren paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lepidosiren paradoxa. ORGANISM Mitochondrion Lepidosiren paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z48715 LOCUS MTLPTRRNA 2606 bp DNA VRT 15-MAR-1995 DEFINITION L.paradoxa mitochondrial genes for 12S rRNA, 16S rRNA, tRNA-Val and tRNA-Leu. ACCESSION Z48715 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; tRNA-Leu; tRNA-Val. SOURCE South American lungfish. ORGANISM Mitochondrion Lepidosiren paradoxa Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Lepidosireniformes; Lepidosirenidae. REFERENCE 1 (bases 1 to 2606) AUTHORS Hedges,S.B., Hass,C.A. and Maxson,L.R. TITLE Relations of fish and tetrapods [letter] JOURNAL Nature 363 (6429), 501-502 (1993) MEDLINE 93281180 REMARK (sites) REFERENCE 2 (bases 1 to 2606) AUTHORS Hedges,S. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) to the EMBL/GenBank/DDBJ databases. Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, University Park, PA, USA, 16802 COMMENT NCBI gi: 732849 FEATURES Location/Qualifiers source 1..2606 /organism="Lepidosiren paradoxa" /mitochondrion rRNA 1..929 /gene="12S rRNA" /citation=[1] /product="12S ribosomal RNA" tRNA 930..997 /citation=[1] /product="tRNA-Val" rRNA 998..2577 /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" tRNA 2578..2606 /citation=[1] /product="tRNA-Leu" BASE COUNT 923 a 506 c 501 g 675 t 1 others ORIGIN BASE COUNT 578 a 291 c 295 g 415 t 9196 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----aaguuu 301 |ACC--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UUAA 841 UAA(ACCA)U UAA------- ---------- ---------- ---------- --------u- 901 ------(--- --)------- |uuc-auuA- -GUAU-C(-G GCGA)GAGAA -auaaa---- 961 -------<-- --auu----- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCACU AAAU-GA--- ---AGUACC( -GUAA-)GGG ---AAA-GU- 1681 ugaaaaacca ugaaauaaaa u--------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaauc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |UCU-AGCAA GAuaa--ac- 2101 gggcaaa--- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------a agaa->---- --(------) ---------- ---------- -uuuaagucu 2701 agc-acCCCG AA-ACUAA-A CG-AGCUACU UUG-GGG-CA GCC------- ---------- 2761 -(-------- ---------- ---------- ---------- ------aaa) ---------- 2821 -GAGCAAA-C CC-UUCCAU( GUGGCAA-A) AUGG-UGGGA --UGACCCC- CUAGUAG-AG 2881 GU(G-AAAA) GCC-AACCcG A-GUUUAGAG AUAGCU-GGU UACUC--GAA AA-AUG-AAU 2941 (-AUA-)GUU CA-UC-UCUG GUUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuccaaaaau 3121 cacc-----u aaaagacuuu ucgaaa---- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-C -UAGG-AGAU AAUUA--AA- GG-GG(-GGA 3481 CAG)CCCCUU UA-AU----- -cAAGG(AUA -CAU)CCU-- uuaaa-g-ag -ga-UAA--- 3541 --uaaaacag aagguau--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aaau u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GUCA -CCUu|-(-- -a)-|GAAAG C(--GUUAAA )GC|-UCAa- auuu--<--- 3841 --uaauuuac cauaaauuuu auaacuaa-- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uu agau--ucc| c--a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuuu aUCGA-GU|- AA-ACUUAUA ---------- 4501 ---------- ---------- (caau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGUA AUAAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- aaa------- (-ccgg---- ---------- ---------- 4741 ---------- -----)---- --uuu-|ucu --ccua-ACA CAA--guguu a|----guua 4801 gaac----gg ---------- ----(--acu ac)c-c|--a cugacu---- ---------- 4861 ---guuau-- -uga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------u aaauuauuau aauuaccuuu uauaagcaag agauacauau aauauuua-- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --acau-|-- 6481 ---AAACUC- -(AACACA)G A|AGUGU--- ----(auu-- ------)--- -----agaa| 6541 |---AGGU-U A--AAAGAUU -AAGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aaAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUUUUG|U-- ---------- ---------- (ucaauuu-- ------)--- ---------- 6901 ------AAA- UAA-AAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aug)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGNGUA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)UGGG AC|CU-GUAU GAAUGGCAAA A-CGAGGGCU 7261 UG-------- ---------- -------ACU GUCUCCUUUA UUCA-AC-CA ----GUGAAA 7321 UU|G|AGCUU UC-UG(U-AC AAAAG)CAGA AAU----AUU UACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AGA CU|--c-uaa cac--uua-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 -----cuaaa auauaaacaa agcgagcccu a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --gug-u-ua -aa---U-GU CUUUGGUUG( 8161 GGG)UG-AC- C|GCGGAG(- --------AA AAACUAAAC- )CUCC-GU|A |a|ug---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------aaug 8341 gcuag----- accu------ ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa cuuaa-gag( -agacag--- )cucua-aaa -auagaaucu cu-------- 8821 ---------- ---------- ---------- ---------- ---------- --------aa 8881 c|---acaau UGAUC-cag- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|---- 9001 CUGAUCAUU- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCCCUAAG 9061 AG(C--CCCA )AUCGACGGG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAU GG-UG(--CA -GC)CGCUAU CAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----auua- 9301 >--------- ---------- --U-CUU-UU CU--(UAGU- AC(-GAAA)G GACC-)AGAA 9361 A--AG-- cgggcca-au gu-------- 9421 -|-------- (-----) 9541 ---------- ---------- -uau-gcccg acc------- ---------- -------uau 9601 ---------- ---auuuacu (gaauua--a uauaa)a-gu -aa-guaaau a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 ag-(aagaua a--)-cuggc a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.dollo 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus dolloi. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus dolloi. ORGANISM Mitochondrion Protopterus dolloi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L42813 LOCUS PRRMTCG 16646 bp DNA VRT 11-JAN-1996 DEFINITION Protopterus dolloi complete mitochondrial genome. ACCESSION L42813 NID g1161203 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; NADH dehydrogenase; complete genome; mitochondrial DNA; transfer RNA. SOURCE Mitochondrion Protopterus dolloi adult eggs DNA. ORGANISM Mitochondrion Protopterus dolloi Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Dipnoi; Lepidosireniformes; Protopteridae; Protopterus. REFERENCE 1 (bases 1 to 16646) AUTHORS Zardoya,R. and Meyer,A. TITLE The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi), supports its phylogenetic position as a close relative of land vertebrates JOURNAL Unpublished (1995) COMMENT NCBI gi: 1161203 FEATURES Location/Qualifiers source 1..16646 /organism="Mitochondrion Protopterus dolloi" /mitochondrion /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="eggs" tRNA 1..67 /gene="tRNA-Phe" /note="putative" /anticodon=(pos:31..33,aa:Phe) /product="transfer RNA-Phe" rRNA 68..1000 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" tRNA 1001..1072 /gene="tRNA-Val" /note="putative" /anticodon=(pos:1034..1036,aa:Val) /product="transfer RNA-Val" rRNA 1073..2663 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" tRNA 2664..2738 /gene="tRNA-Leu(UUR)" /note="putative" /anticodon=(pos:2699..2701,aa:Leu) /product="transfer RNA-Leu" CDS 2739..3707 /note="NCBI gi: 1161204" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 1" /db_xref="PID:g1161204" /translation="MNPLPTITNSLMYIVPILLAVAFLTLVERKIIGYMQHRKGPNVV GPYGLLHPIADGVKLFIKEPVRPTASSTTLFILAPTLALTLALLIWTPLPMPFPMANV NLTLLFIMAVSSLSVYSILTSGWASNSKYALIGALRAIAQTISYEVSLGLILLAAIIF MGNFSMLTFSTGQEAIWLIIPAWPLATMWYVSTLAETNRSPFDLTEGESELASGFNVE YAGGPLASFYLAEYANIMLMNTISVIIFLGDSLNLLLPEMMTSLLMFKTTALSLVFLW VRASYPRFRYDQLMHLIWKNFLPLTLSLIILHISAPLAFTGLPPQF" tRNA 3706..3777 /gene="tRNA-Ile" /note="putative" /anticodon=(pos:3738..3740,aa:Ile) /product="transfer RNA-Ile" tRNA complement(3775..3845) /gene="tRNA-Gln" /note="putative" /anticodon=(pos:3811..3813,aa:Gln) /product="transfer RNA-Gln" tRNA 3845..3913 /gene="tRNA-Met" /note="putative" /anticodon=(pos:3875..3877,aa:Met) /product="transfer RNA-Met" CDS 3914..4942 /note="putative; NCBI gi: 1161205" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 2" /db_xref="PID:g1161205" /translation="MSPTILSVLIMSLGLGTTVTFMSSNWLLAWIGLEINTMSIIPLM SQQHHPRATEAATKYFLAQAAASIMILFSSMINAWVAGEWNITNLLSPTSATLITLAL AIKIGLAPMHFWLPEVLQGVTLMTGAILVTWQKLAPFILLYQISDTVNPTLLLVLALS TLTGGWSGLNQTQLRKILAYSSIAHMGWMTMILPFAPNLALLNLMIYITLTLPLFFTL NICSSTSIPSLALNWTKSPLLMTMLLITLLSLGGLPPLTGFMPKWLILQELTNNDLYI FATAAALSALLSLYFYLRLCYTTSLTTSPNTLNNNHWRPNAGTYQILSMILIFATALL PLTPGLIM" tRNA 4945..5014 /gene="tRNA-Trp" /note="putative" /anticodon=(pos:4976..4978,aa:Trp) /product="transfer RNA-Trp" tRNA complement(5015..5083) /gene="tRNA-Ala" /note="putative" /anticodon=(pos:5051..5053,aa:Ala) /product="transfer RNA-Ala" tRNA complement(5084..5156) /gene="tRNA-Asn" /note="putative" /anticodon=(pos:5121..5123,aa:Asn) /product="transfer RNA-Asn" tRNA complement(5182..5248) /gene="tRNA-Cys" /note="putative" /anticodon=(pos:5218..5220,aa:Cys) /product="transfer RNA-Cys" tRNA complement(5249..5317) /gene="tRNA-Tyr" /note="putative" /anticodon=(pos:5284..5286,aa:Tyr) /product="transfer RNA-Tyr" CDS 5319..6866 /note="putative; NCBI gi: 1161206" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 1" /db_xref="PID:g1161206" /translation="MTLTRWLFSTNHKDIGTLYMVFGAWAGMVGTALSLLIRAELSQP GALLGDDQVYNVLVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLAGSGVEAGAGTGWTVYPPLASNLAHAGASVDLTIFSLHLAGVSSILG SINFITTIINMKPPAASQYQTPLFIWSVMITTVLLVLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVGFYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIMLHDTYYVVAHFHYVLSMGAVFAIMGG LMHWFPLMTGYTLHDTWTKIHFGVMFLGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTLSSVGSLISLVAVILLLFIIWEAFASKREVNSIELIYTNVEWMHGCPPPYHTFEEP AFVQIQR" tRNA complement(6871..6941) /gene="tRNA-Ser(UCN)" /note="putative" /anticodon=(pos:6907..6909,aa:Ser) /product="transfer RNA-Ser" tRNA 6944..7012 /gene="tRNA-Asp" /note="putative" /anticodon=(pos:6974..6976,aa:Asp) /product="transfer RNA-Asp" CDS 7015..7705 /note="putative; NCBI gi: 1161207" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 2" /db_xref="PID:g1161207" /translation="MAHPSQLGLQDAASPVMEELIHFHDHALMIVFLISTLVLYIIVA MVSTKFTNKFILDSQEIEIVWTILPAVILIMIALPSLRILYLMDEINDPHLTVKAVGH QWYWSYEYSDYETLNFDSYMTPTQDLTPGQFRLLETDYRMVVPMESPIRVLITADDVI HSWAVPALGIKMDAVPGRLNQASFITARPGMFYGQCSEIWGANHSFMPIVVEAAPLQH FENWSSLMLEKA" tRNA 7706..7774 /gene="tRNA-Lys" /note="putative" /anticodon=(pos:7736..7738,aa:Lys) /product="transfer RNA-Lys" CDS 7776..7943 /note="putative; NCBI gi: 1161208" /codon_start=1 /transl_table=2 /product="adenosine triphosphate subunit 8" /db_xref="PID:g1161208" /translation="MPQLNPGPWFNILLISWLTFLLILLPKILSHKTNNCPTPQSQDK LFLPPWNWPWL" CDS 7934..8615 /note="'putative'; NCBI gi: 1161209" /codon_start=1 /transl_table=2 /product="'Adenosine Triphosphatase subunit 6'" /db_xref="PID:g1161209" /translation="MTLSFFDQFLSPTILGIPLIFLSLILPWLLYPTAPNRWLTSRLL TLQNWLILRTAAQLMAPINQQGQKWAVILTSLMLFLISINLLGLLPYTFTPTTQLSMN MGWGVPMWLATVLIGLRNQPTTSIGHLLPEGTPNLLIPALVVIETISLFIRPLALGVR LTANLTGGHLLMQLIATAAFFGASVMPTIALLPYTILFLLTILELAGAMIQAYVCALL LTLYLQENI" CDS 8616..9399 /note="putative; NCBI gi: 1161210" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 3" /db_xref="PID:g1161210" /translation="MAHQAHASHMGDPSPWPLTGATAALLMTSGLAIWFHYHTVILLT IGLILTLLTMYQWWRDVVREGTFQGHHTAPVQKGLRYGMILFITSEVLFFFGFFWAFY HSSLAPTPELGGCWPPTGIVPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGNRKETT QALIFTVLLGLYFTALQAMEYYEAPFTIADSVYGATFFVATGFHGLHVIIGSTFLLIC LLRQAQYHFTSNHHFGFEASAWYWHFVDVVWLCLYVSIYWWGS" tRNA 9400..9469 /gene="tRNA-Gly" /note="putative" /anticodon=(pos:9431..9433,aa:Gly) /product="transfer RNA-Gly" CDS 9471..9816 /note="putative; NCBI gi: 1161211" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 3" /db_xref="PID:g1161211" /translation="MNLLIVMIISTALPIILMLLGFWLPNLNPDNEKVSPYECGFDPL GSARLPFSLKFFLVAILFLLFDLEIAILLPLPWALQYDTPTTAFLIALLILILLTLGL IYEWLQGGLEWAE" tRNA 9817..9885 /gene="tRNA-Arg" /note="putative" /anticodon=(pos:9847..9849,aa:Arg) /product="transfer RNA-Arg" CDS 9886..10182 /note="putative; NCBI gi: 1161212" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4L" /db_xref="PID:g1161212" /translation="MTPTLFSIVSAFYSSLMGLALNRSHLILALLCLEGAMLSVFLML SMWSAFQGPYSIAGTPLILLALAACEAGTGLALMVATARTHGTDHLKSLNLLQC" CDS 10176..11559 /note="putative; NCBI gi: 1161213" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4" /db_xref="PID:g1161213" /translation="MLKILIPTIMLIPTTWLISLPLLWTMPLIYTTLIACASLSFLKW NSISGWSFINLYMTIDSISAPLLVLSCWLLPLMILASQNHMLHEPLQRQRVYLILLMI LQTFLLLTFMASELIMFYVMFEATLIPTLIIITRWGNQAERLQAGTYFLFYTLAGSLP LLIALLLINKNMMTSSIVLLNFFSTDFSSNSYASTLWWAASLFAFLVKMPLYGVHLWL PKAHVEAPIAGSMVLAAILLKLGGYGMLRMIPILPPLAKPLIYPFIILALWGIIMTGM ICLRQSDLKSLIAYSSVSHMGLVISGILIQTPWGLTGAITLMIAHGLTSSLLFCLANT NYERTHSRTMLLARGMQTILPLFGLWWLLANLTNLALPPSINLMGELPIIMATFNWAG LTILLTGIGTLITATYSLYMYMMTQHGQISPQTTMMEPAHTREHLLISLHLIPSFLLI MKPELIWGWFC" tRNA 11560..11628 /gene="tRNA-His" /note="putative" /anticodon=(pos:11590..11592,aa:His) /product="transfer RNA-His" tRNA 11629..11697 /gene="tRNA-Ser(AGY)" /note="putative" /anticodon=(pos:11655..11657,aa:Ser) /product="transfer RNA-Ser" tRNA 11698..11766 /gene="tRNA-Leu(CUN)" /note="putative" /anticodon=(pos:11728..11730,aa:Leu) /product="transfer RNA-Leu" CDS 11767..13602 /note="putative; NCBI gi: 1161214" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 5" /db_xref="PID:g1161214" /translation="MTQQSVMLSSSLLIFFILLAPLALALVPSLITPHWHKFYAKSAV KLAFFISLLPLFLFMDQGIEIVSTNYQWMAINSFTFNIAFKFDFLSITFMSIALFVTW SILDFAAWYMHEDPYINQFFKYLLLFLTAMMVLTSANNLFQLFIGWEGVGIMSFLLIG WWYGRADANTAALQAVLYNRIGDIGLILAISWFTTNFNTLDIQQLFILNTNESSIIPL LGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLLRLHPLLQNNE TALTLCLLLGAITTVFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPLLAFLHI CTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLNMALPMTTSCLLIGSLALSGGPFLG GFFSKDAIIEAMNSSFLNAWALTWTLIATSFTAAYSLRIIFYVSMNFPRYPALTPILE AQQASTPIMRLAIGSVVAGFLLILNIPPPPPQVMTMPTSAKLAAIGVTIVGLFTAAEL SNITNKQLKTFPYLTPYNFSNMLAYFQSTTHRLFPTLNLKWAQLLATHLIDVIWLEKS GAKSSMKINTTFSTFITNSQQGMIKTYLTLFFMSTATFLMFLLLN" CDS complement(13591..14103) /note="putative; NCBI gi: 1161215" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 6" /db_xref="PID:g1161215" /translation="MSFIFFTLLVGFLVSLIGVASNPAPYFAALGLVFGAGIGCGILI WLGNSFLSLILFLIYLGGMLVVFGYSAALAAEPYPGGWEDWSVLLYSLLLLGAGVGIG WAVVGGWDVFDSASFLGGTILGELSGVGGMYWCGGFILVLVGWSLLLALFVVLEVTRG GVRGAMRPIE" tRNA complement(14104..14172) /gene="tRNA-Glu" /note="putative" /anticodon=(pos:14140..14142,aa:Glu) /product="transfer RNA-Glu" CDS 14175..15318 /note="putative; NCBI gi: 1161216" /codon_start=1 /transl_table=2 /product="cytochrome b" /db_xref="PID:g1161216" /translation="MATNIRKTHPLLKIVNNSLIDLPTPSNISAWWNFGSLLGFCLIT QILTGLFLAMHYTADTSTAFSSIAHIARDVNYGWLLRNIHANGASMFFICIYIHIGRG IYYGSFLYTETWNIGVVLFLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYLGDT LVQWIWGGFSVDNATLTRFFAFHFLLPFIISAMTAAHFLFLHETGSNNPTGLNSNLDK ISFHPYFTMKDLLGFLMLASFLCLLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFL FAYAILRSIPNKLGGVLALMASILILFIIPFLHRAKQRTMSYRPLSQFMFWLLTADML ILTWIGGQPVEHPFILIGQIASATYFLLFLLLFPLITSLENKLLYKY" tRNA 15319..15390 /gene="tRNA-Thr" /note="putative" /anticodon=(pos:15350..15352,aa:Thr) /product="transfer RNA-Thr" tRNA complement(15393..15462) /gene="tRNA-Pro" /note="putative" /anticodon=(pos:15429..15431,aa:Pro) /product="transfer RNA-Pro" D-loop 15463..16646 /note="control region" BASE COUNT 4800 a 4406 c 2616 g 4824 t ORIGIN BASE COUNT 536 a 341 c 311 g 403 t 9184 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----uaaaug 301 |GUa--agc| cug------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ -ucauuuuuu aacauguaaa uuuuauauaa 601 cacacacucu g--------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----UAAG 841 UAA(ACCA)U UUA------- ---------- ---------- ---------- --------u- 901 ------(--- --)------- |acu-ucuA- -GUAU-U(-G GAGA)AAGAA -agaaa---- 961 -------<-- --uucaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- -------GCG CAUA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-AC- 1681 ugaaaaacua gugaaaaau- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaca 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |UCU-AGCUA GUcau-gaa- 2101 ggg-cagaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -aga->---- --(------) ---------- ---------- auuuuagucc 2701 ca--ccCCCg AA-ACUAG-G CG-AGCUACU CCG-AGA-CA GCC------- ---------- 2761 -(-------- ---------- ---------- ---------- -----aaac) ---------- 2821 -GGGCCAA-C UC-GUCCAU( GUGGCAA-A) AUGG-UGAGa --aGAGCUC- CGAGUAG-CG 2881 GU(G-AAAA) GCC-AAAC-G A-GCCUAGAG AUAGCU-GGU UGCGC--GAG AA-ACG-AAU 2941 (-CUUA)GUU CU-AC-CCUA AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuucacgggc 3121 uaca-----g ccuuaaaccc cguaauu--- ---------- ---------- ---------- 3181 ----aa---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAGA-GGCU ACUCA--AA- GG-GG(-GGA 3481 CAG)CCCCUU UG-UG----- -aAAGG(ACA -CAA)CCU-c aacaa-a-cg -ga-UAA--- 3541 --ugauuaau cuacaag-g- ua-------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aaau u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UaaGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCaa|c(a- aa)-|GAAAG C(--GUAUA- )GC|-UCCc- ccau--<--- 3841 --aacuuuau ccaucaauuc aauuaaacaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc auaa--ucc| au-c-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ------acgu aUCGA-GC|- UG-ACUUAUA ---------- 4501 ---------- ---------- (ucau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AAAAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- aa-------- (-uacaa--- ---------- ---------- 4741 ---------- -----)---- ---uu-|uuc u-ccuc-ACA UAG--guguu a|----guca 4801 gaac----ag ---------- ----(--auu ac)c-u|--a cugaca---- ---------- 4861 ---auuac-- -uga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- uaaugaacac aauguauuaa ccugucau-- -----aagca agaaaacccu 5761 acacugauau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucau-|-- 6481 ---aAAUUC- -(UACACU)G A|AGUGU--- ----(gcuu- ------)--- -----ggaa| 6541 |---AAAU-U A--AGGGGGG -GAGA-AGGA AUUCGGCAA- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c uaUGGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|c-- ---------- ---------- (caa------ ------)--- ---------- 6901 ------aua- UAG-GAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ucu)------ ---------- ---------| 7141 ---GUUU-AA Cu|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUCU(-U AAUU-)AGGG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUC 7261 CA-------- ---------- -------ACU GUCUCCUCCC CCAG-AU-UA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-UC AAAAG)CGGA UAU----UUU UUCAUAAGAC GAGAAG-ACC 7381 CUGuGG-|-A GCUUA--AAG UU|--c-uaa uau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ------aaca 7561 ug-agcguaa auauauacuu uaaguuuug- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-u-au -uaa-aU-AC UUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------UA UAAAAAACC- )CUCC-GC|A |a|ua---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ca-au---uc u--------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------au uuuaa-gaa( -ggacac--- )uucuc-aaa cuagaauauc u--------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|---acaau UGACC-cagu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------c ua)--|---A 9001 CUGAGCAAU- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCCUUUAAG 9061 AG(U--CCCC )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGGU| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAC CAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--UAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-a(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acuu- 9301 >--------- ---------- --C-UUU-UU UC--(UAGU- AC(-GAAA)G GACU-)GAAA 9361 A--AG-- ggggccu-au au-------- 9421 -|-------- (-----) 9541 ---------- ---------- auau-gcccc acc------- ---------- -------cac 9601 ---------- ---uacuacu (gaauuu--a uauaa)a-gu -ag-ccaagu g--------- 9661 ---------- ---------| ------(--- )--------- -------|cg 9961 gg-(-agaaa a--)-ccaca cu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Prot.sp 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus sp.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus sp. ORGANISM Mitochondrion Protopterus sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21923 ID MTPS12SRA standard; DNA; ORG; 2621 BP. XX AC Z21923; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE Protopterus sp. mitochondrion 12S and 16S rRNA genes, and tRNA-Val DE and -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Protopterus sp. OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "The closest living relative of tetrapods indicated by RT slow-evolving mitochondrial genes"; RL Nature 0:0-0(1993). XX RN [2] RP 1-2621 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2621 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2621 FT /organism="Protopterus sp." FT /mitochondrion FT rRNA 1..930 FT /product="12S rRNA" FT /citation=[1] FT tRNA 931..1002 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1003..2592 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2593..2621 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2621 BP; 858 A; 596 C; 534 G; 631 T; 2 other; BASE COUNT 533 a 340 c 312 g 403 t 9187 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----uaaaug 301 |GUa--agc| cug------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ -ucauuuuuu aacauguaaa uuuuauauaa 601 cacacacucu g--------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----UAAG 841 UAA(ACCA)U UUA------- ---------- ---------- ---------- --------u- 901 ------(--- --)------- |acu-ucUA- -GUAU-U(-G GAGA)AAGAA -Agaaa---- 961 -------<-- --uucaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- -------GCG CAUA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-AC- 1681 UGaaaaacua gugaaaaau- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaca 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |UCU-AGCUA GUcau--ga- 2101 agggcagaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuuuagucc 2701 ca--ccCCCG AA-ACUAG-G CG-AGCUACU CCG-AGA-CA GCCA------ ---------- 2761 -(-------- ---------- ---------- ---------- ------aac) ---------- 2821 -GGGCCAA-C UC-GUCCAU( GUGGCAA-A) AUGG-UGAGA --AGAGCUC- CGAGUAG-CG 2881 GU(G-AAAA) GCC-AAAC-G A-GCCUAGAG AUAGCU-GGU UGCGC--GAG AA-ACG-AAU 2941 (-CUUA)GUU CU-AC-CCUA AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuucacgggc 3121 uaca-----g ccuuaaaccc cguaauu--- ---------- ---------- ---------- 3181 ----aa---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAGA-GGCU ACUCA--AA- GG-GG(-GGA 3481 CAG)CCCCUU UG-UG----- -aAAGG(ACA -CAA)CCU-c aacaa-a-cg -ga-UAA--- 3541 --ugauuaau cuacaag-g- ua-------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aaau u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|C(A- AA)-|GAAAG C(--GUAUA- )GC|-UCCc- ccau--<--- 3841 --aacuuuau ccaucaauuc aauuaaacaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc auaa--ucc| a--u-cu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----uacgu aUCGA-GC|- UG-ACUUAUA ---------- 4501 ---------- ---------- (ucau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AAAAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- aau------- (-aca----- ---------- ---------- 4741 ---------- -----)---- --auu-|uuc u-ccuc-ACA UAG--guguu a|----guca 4801 gaac----ag ---------- ----(--auu ac)c-u|--a cugaca---- ---------- 4861 ---auuac-- -uga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- uaaugaacac aauguauuaa ccugucau-- -----aagca agaaaacccu 5761 acacugauau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uca--|-- 6481 -u-aAAUUC- -(UACACU)G A|AGUGU--- ----(gcuu- ------)--- -----ggaa| 6541 |---AAAU-U A--AGGGGGG -GAGA-AGGA AUUCGGCAA- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c uAUGGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|c-- ---------- ---------- (caa------ ------)--- ---------- 6901 ------aua- UAG-GAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ucu)------ ---------- ---------| 7141 ---GUUU-AA Cu|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUCU(-U NNUU-)AGGG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUC 7261 CA-------- ---------- -------ACU GUCUCCUCCC CCAG-AU-UA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-UC AAAAG)CGGA UAU----UUU UUCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AAG UU|--c-uaa uau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<----aac -augagcgua aauau-auac 7561 uu-uaa---- ---------- -guuuug--- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- --uaa-u-au -uaa-aU-AC UUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------UA UAAAAAACC- )CUCC-GC|A |a|ua---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ca-au---uc u--------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------au uuuaa-gaa( -ggacac--- )uucuc-aaa cuagaauauc u--------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|---acaau UGACC-cagu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------c ua)--|---A 9001 CUGAGCAAU- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCCUUUAAG 9061 AG(U--CCCC )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGGU| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAC CAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--uAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acuu- 9301 >--------- ---------- --C-UUU-UU UC--(UAGU- AC(-GAAA)G GACU-)GAAA 9361 A--AG-- ggggccu-au au-------- 9421 -|-------- (-----) 9541 ---------- ---------- auau-gcccc acc------- ---------- -------cac 9601 ---------- ---uacuacu (gaauuu--a uauaa)a-gu -ag-ccaagu g--------- 9661 ---------- ---------| ------(--- )--------- -------|cg 9961 gg-(-agaaa a--)-ccaca cu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (14)-Tetra 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (15)-Amnio 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (16)-Mamma 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (17)-Proto 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.O.anati 10775 bp RNA RNA 29-JUL-1996 DEFINITION Mitochondrion Ornithorhynchus anatinus.; ATP synthase subunit 6; ATP synthase subunit 8; cytochrome b; cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; cytochrome c oxidase subunit 3; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6. ACCESSION X83427 KEYWORDS ATP synthase subunit 6; ATP synthase subunit 8; cytochrome b; cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; cytochrome c oxidase subunit 3; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6. SOURCE Mitochondrion Ornithorhynchus anatinus. ORGANISM Mitochondrion Ornithorhynchus anatinus. REFERENCE 1 (bases 1 to 17019) AUTHORS Janke,A., Gemmell,N., Feldmaier-Fuchs,G., von Haeseler,A. and Paabo,S. TITLE The mitochondrial genome of a monotreme, Platypus (Ornitorhynchus anatinus) JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 17019) AUTHORS Janke,A. TITLE Direct Submission JOURNAL Submitted (13-DEC-1994) A. Janke, Zoologisches Institut der Univ. Munich, Luisenstrasse 14, 80333 Munich, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X83427 BASE COUNT 564 a 311 c 260 g 427 t 9213 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAC 301 |UCU--AGC| CCA------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<-aauua aucuuaauac acauauaaac ucuaau---- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----AAAC 841 UAA(AACA)U UUU------- ---------- ---------- -----aa--- ---cgcuaac 901 ccc------- ---------- |------UA- -GUAU-A(-G GAGA)UAGAA ---------- 961 -------<-a aggaaau--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- U-GGAGCCUU AGAC-AU--- ---AGUACU( -GUGA-)AGG ---AAA-AA- 1681 UGaaagauua gcuu------ ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA GCCAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuuaac 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGG |UUU-AGCUA GAaaacuua- 2101 uauacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -aau->---- --(------) ---------- ---------- -uuuaauaua 2701 -aa-auCCCG AA-ACUAG-A UG-AGCUACU AUc-GAG-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auua) ---------- 2821 -GAAUCAA-C CC-GUCUAU( GUUGCAA-A) AUAG-UGGGA --UGACUUu- AUAGUAG-aG 2881 GU(G-AAAA) AUC-AACC-G G-ACCUAGUG AUAGCU-GGU UAGCC--AAA AA-ACG-AAU 2941 (-UUAA)GUU CA-AC-AAUA AGUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< ----uauuuc 3121 cuga-----u auacuauauu aaccaua--- ---------- ---------- ---------- 3181 ----a----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAUA-AGUU AUUCA--UA- AG-AG(-GGU 3481 CAG)CCCUUA UG-AA----u --aAGG(AAA -CAA)CCU-c uaaUA-G-AG -GG-AAA--- 3541 --uuuauucu uauuuac--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)A|aAAGC G(--UUAAAG )CU|-uaa-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- aCUA--CCC| C--U-Aa|-- --------aa uaaua----- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- -UUGG-CU|- UA-AUCUAUg u--------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGAA AUAAUGC-UA 4681 AA|AUAAGUA -AACC-AGA- ---------- (auuu----- ---------- ---------- 4741 ---------- -----)---- ------|auu c-uccauGCA CUA--gcuua a|----auua 4801 g-aac---gg ---------- ----(--agc au)c-c|-a- cuaaua---- ---------- 4861 ---auuaa-- -cagc----- ---------- ---------- ---------- -------<-u 4921 aaauaaucau aaauauuaac uagaaaca-- --uuauuuua uaa------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(GACACA)G G|AGUGC--A UCU-(AAGGA A-----)-AG AUu--aa--| 6541 |--------- ---AA-GGAG -UAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c uaGGAUUU|C GC---CUG-U UU(ACCAA)A AA-CAUc-GC 6841 CUCUAG|C-- ---------- ---------- (auaacaa-- ------)--- ---------- 6901 ------GUA- UUA-GAGGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ucu)------ ---------- ---------| 7141 ---AUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUCUCC(-U AAUU-)AGAG AC|UA-GUAU GAAUGGCUAG A-CGAAAAUC 7261 CA-------- ---------- -------ACU GUCUCUUACU CCCa-au-ca ----GUGAAA 7321 UU|G|CCCUC CC-CG(U-GC AGAGA)CGGG GAU----AAC ACCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUU--AAU CA|--u-aga uuu--au--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-ucuuuu uca--uacag ac-cc-a-aa 7561 ag-cuca-ac accuu-aaga a--------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- uuuuu-u-ca -ac---U-GA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAACAAAAC- )CUCU-GA|a |u|gca--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 -----u---a guaau-aac( -uuacaa--- )guuua-aac gcaaaacu-- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ------gcca 8881 -|---guaAU AGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au ua)--|---- 9001 UUGAUCAAA- |GGA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC- 9121 AU-CC-AAAU GG-UG(--CA -GC)CGCUAU Uaau-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUGG--- --|-|<---- ---------- ---------- ---------- -----gua-- 9301 >--------- ---------- --a-uUU-CU CC--(UAGU- AC(GGAAA)G GACC-)AGAG 9361 A--AA-<--- ---------- ---------- -------u>- caggccaauc uu-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---aaaaag> 9541 ---------- ---------- aagc-cucca acuuaa---- ---------- ---------- 9601 ---------- -----caaau (gauuuc-au cucaa)--uu -ug------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|au 9961 cc-(uagacc a--)-ggaau ucu~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (17)-Theri 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (18)-Euthe 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (19)-Artio 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (20)-Rumin 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.melam 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aepyceros melampus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aepyceros melampus. ORGANISM Mitochondrion Aepyceros melampus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86496 LOCUS AEYMTTGRG 2680 bp ds-DNA ORG 14-MAY-1992 DEFINITION Aepyceros melampus mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86496 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Aepyceros melampus (chromosome Mitochondrion Aepyceros melampus) liver DNA. ORGANISM Mitochondrion Aepyceros melampus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Aepycerotini. REFERENCE 1 (bases 1 to 2680) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1023 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1024..1089 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1090..2661 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2662..>2680 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 1012 a 572 c 463 g 633 t ORIGIN BASE COUNT 610 a 334 c 269 g 378 t 9184 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAA 301 |UCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UCAcccuuca a--------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-uaAA- -GUAU-A(-G GAGA)UAGAA -Auucu---- 961 -------<-- ----aaaca- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAU-GA- 1681 UGaaagaaaa uaauu----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GUaaaa-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuucagcua 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUACU UAU-AAA-CA GUCC------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aucaa) ---------- 2821 -GAACUAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUG- UAAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-CUCA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- caaacaaacc ucacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAA-AGUU AGUCU--AA- AA-GG(-GUA 3481 CAG)CUUUUU AG-AA----- --aCGG(AUA -CAA)CCU-U GACUA-G-ag -ag-UAA--- 3541 --gauauaau aucauc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cUAA--cuc| C--U-AG|-- -------ccc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------gau aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (uuaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGUA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---cau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuc-GCA CAA--accua a|----auca 4801 guacc---ug ---------- ----(---au aa)u-a|-uu cugacu---- ---------- 4861 ---guuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(AACACA)G G|AGUGC--- ----(acc-c c-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuucca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua acu)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAA UAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-CUA GUC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagag aau--aaacc aaacc(a-cc 7561 aa)ggaa-ua aaaau----- acuccuga-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-CU -AG---C-AG UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAAUC- )CUCC-GA|A |c|gau--|< 8221 -ucuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aacc-agac( -ucacca--- )gucaa-auu -auucu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa au)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCUU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaaac-> 9541 ---------- ---------- aagc-gccuc aaac------ ---------- ---------- 9601 ---------- --caauuaau (gaacuc--a ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(aagaaa a--)-gggcu caguuaaggu ggcagagccg g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.ameri 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Antilocapra americana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Antilocapra americana. ORGANISM Mitochondrion Antilocapra americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M55540 LOCUS ANLMTTGRG 2684 bp ds-DNA ORG 05-FEB-1991 DEFINITION Antilocapra americana mitochondrial Phe-, Val-, and Leu- (5' end) tRNA and 12S, and 16S rRNA genes. ACCESSION M55540 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Antilocapra americana liver mitochondrial cell line DH-alpha-5, clone pAAMMR 3.8-8. ORGANISM Mitochondrion Antilocapra americana Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Antilocapridae. REFERENCE 1 (bases 1 to 2684) AUTHORS Kraus,F. and Miyamoto,M.M. TITLE Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences JOURNAL Systematic Zoology (1990) In press STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..67 /gene="Phe-tRNA" /product="transfer RNA-Phe" rRNA 68..1025 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1026..1092 /gene="Val-tRNA" /product="transfer RNA-Val" rRNA 1093..2665 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2666..2684 /gene="Leu-tRNA" /partial /product="transfer RNA-Leu" BASE COUNT 983 a 592 c 487 g 622 t ORIGIN BASE COUNT 585 a 344 c 276 g 368 t 9202 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 CAA(AACA)U UUAcccacug c--------- ---------- ---------- ---------- 901 ------(--- --)------- |-uc-uaAA- -GUAU-A(-G GAGA)UAGAA -Auucu---- 961 -------<-- ----aaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCUAU AGAG-GGA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaaaa aacuu----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GUaaca-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuucagcua 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUAUU UAU-GAA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aucaa) ---------- 2821 -GAACCAA-C UC-AUCUGU( GUGGCAA-A) ACAG-UGAGA --AGAUUUA- UAAAUAG-AG 2881 GU(G-AAAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-ACG-AAU 2941 (-CUUA)GUU CG-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aauc------ uccauaaauc caacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-GG(-GUA 3481 CAG)CCUUUU AG-AA----- --aUGG(GUA -CAA)CCU-U AACUA-G-ag -ag-UAA--- 3541 --gaccuaaa aauauc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cCAA--cuc| C--U-AG|-- -------ccc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- CA-AUCUAUU U--------- 4501 ---------- ---------- (uaca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 GU|AUGAGUA -ACAA-GAA- g--------- (---cac--- ---------- ---------- 4741 ---------- -----)---- ----c-|UUC U-ccuu-GCA UAA--guuua a|----guca 4801 guauc---ug ---------- ----(---au ac)u-a|-cu cugacu---- ---------- 4861 ---guuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UGACCC- -(AACACA)G G|GAUGC--- ----(auu-c a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auaccca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cua)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GCAU GAAUGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----GAA CUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-CUA GCC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagac aaaccaaacc uaacc(a-cc 7561 aa)ggga-ua acaau----- gcucucca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-CU -AG---C-AG UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAAUC- )CUCC-GA|A |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gaca-agac( -uuacaa--- )gucaa-auu -augau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUCAAG 9061 AG(U--CCAU )AUCGACAAC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- gaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaaa-> 9541 ---------- ---------- aagc-gccuu aaac------ ---------- ---------- 9601 ---------- --caauuaau (gauauu--a ucuua)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa g--)-gggcc ca~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.kirki 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Madoqua kirki. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Madoqua kirki. ORGANISM Mitochondrion Madoqua kirki. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86495 LOCUS MDQMTTGRG 2676 bp ds-DNA ORG 14-MAY-1992 DEFINITION Madoqua kirki mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86495 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Madoqua kirki (chromosome Mitochondrion Madoqua kirki) liver DNA. ORGANISM Mitochondrion Madoqua kirki Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Neotragini. REFERENCE 1 (bases 1 to 2676) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1025 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1026..1092 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1093..2657 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2658..>2676 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 1001 a 556 c 467 g 652 t ORIGIN BASE COUNT 591 a 310 c 281 g 402 t 9191 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAUA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAccuuug- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-ac-uaAA- -GUAU-A(-G GAGA)UAGAA -Aucuu---- 961 -------<-- -----aaca- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAU-GA- 1681 UGaaagaaaa aauu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaucu 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GCaaaa-ac- 2101 uugacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgga->---- --(------) ---------- ---------- -uuuuagcca 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUACU UAU-GAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----guuaa) ---------- 2821 -GAACUAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUA- UAAGUAG-AG 2881 GU(G-AAAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-CUUA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- caaacaaa-u ccacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AU----- --aUGG(AUA -CAA)CCU-U GACCA-G-ag -ag-UAA--- 3541 --aauuuaac aaaacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uUAA--cuc| C--U-GG|-- -------gcc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------auu aCUGG-AC|- UA-UUCUAUU G--------- 4501 ---------- ---------- (uaua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAGGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---cau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuu-GCA UAA--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-cc cugacu---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(AACACA)G G|CAUGC--- ----(auu-c ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuccca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u gac)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCCC CC-CG(U-GA AGAGG)CGGG GAU----AGA CAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-CUA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa agau-uaacu uaacc(a-cc 7561 aa)gggg-ca augau----- auucuuca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -AG---C-AG UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -ucuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gaca-agac( -gcacaa--- )gucga-auc -aaauu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCGAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaaau-> 9541 ---------- ---------- aagc-gccuu aaac------ ---------- ---------- 9601 ---------- --uaauuaau (gauuuc--a ucuua)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 uc-(uagaaa a--)-gagcu caguuaaggu ggcagagccg g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.B.tauru 10775 bp RNA RNA 24-JAN-1981 DEFINITION Bos taurus mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Bos taurus mitochondria. ORGANISM Bos taurus mitochondria. REFERENCE 1 (bases 1 to 17019) AUTHORS No information JOURNAL Dec. 24 1981 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01394 Phylo:Mitochondria,Animal,Mammal,bovine BASE COUNT 593 a 330 c 277 g 371 t 9204 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAGA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAaucccaa ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-uaAA- -GUAU-A(-G GAGA)UAGAA -Aucua---- 961 -------<-- -----agua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAC-GA- 1681 UGaaagaaaa aaacua---- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GUauaagac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agc-agCCCG AA-ACCAG-A CG-AGCUACU CAC-AAA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----accaa) ---------- 2821 -GAACUAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUG- UAAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-CUAA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 auu------- caaauaaacc ccacuguag- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aCGG(AUA -CAA)CCU-U GACUA-G-ag -ag-UAA--- 3541 --aauuuaac acuacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uUAA--cuc| C--U-AG|-- --------cc cc-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (uaga---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---aau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuu-GCA UAA--gucua a|----guca 4801 gugcc---ug ---------- ----(---au aa)u-a|-cu cugacc---- ---------- 4861 ---acuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(auc-u a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuccca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA UUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a acu)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCGC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----GCA CAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-CCA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagag aau--agauu uaacc(a-uu 7561 aa)ggaa-ua acaac----- aaucucca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -GG---U-AG UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -ccacaa--- )gucaa-auc -acucu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cucAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----acgu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaaauc> 9541 ---------- ---------- aagc-gccuu aaga------ ---------- ---------- 9601 ---------- --caaccaau (gauaac--a ucuca)a-cu -ga------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaac a--)-gggcu ua~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.B.trago 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Boselaphus tragocamelus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Boselaphus tragocamelus. ORGANISM Mitochondrion Boselaphus tragocamelus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86494 LOCUS BOSMTTGRG 2685 bp ds-DNA ORG 14-MAY-1992 DEFINITION Boselaphus tragocamelus mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86494 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Boselaphus tragocamelus (chromosome Mitochondrion Boselaphus tragocamelus) liver DNA. ORGANISM Mitochondrion Boselaphus tragocamelus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Boselaphini. REFERENCE 1 (bases 1 to 2685) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..69 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 70..1025 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1026..1092 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1093..2666 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2667..>2685 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 1022 a 577 c 459 g 627 t ORIGIN BASE COUNT 615 a 341 c 273 g 364 t 9182 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UCAccuuaua a--------- ---------- ---------- ---------- 901 ------(--- --)------- |auu-aaAA- -GUAU-A(-G GAGA)UAGAA -Auuua---- 961 -------<-- ----aagua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAA-AAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaaaa aauc------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaucc 2041 --)------- -----CUU-A UACCUU(UU- GCAUA)AUGA |AUU-AACUA GCacagaac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 aau-aaCCCG AA-ACCAG-A CG-AGCUACU CAC-AAA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUG- UAAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-CUCA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 auc------- caaauaaauu uuacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------Cc-U -UAAA-AGUU AGUCU--AU- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aUGG(AUA -CAA)CCU-A AACUA-G-ag -ag-UAA--- 3541 --gaucuaau accacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cCAA--cuc| C--C-AG|-- -------ccc cu-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------uac aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (caaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---aau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-cccu-GCA UGA--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-uc cugacu---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(AACACA)G G|AAUGC--- ----(acu-c a-----)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aUAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-aucacca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG GAU----GAA CCAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAC UA|--A-CUA GCC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa aac--aaaua caacc(accc 7561 aa)ggaa-ua aaaaa----c ucucuau--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --GGG-C-AU -AG---C-AG UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gauu-agac( -cuacaa--- )gccaa-auc -acucu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ac)--|---- 9001 UUGAUCAAC- |GGA-AUAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU -uAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-AGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----auga- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---aaaac-> 9541 ---------- ---------- aagc-gccuu aaaa------ ---------- ---------- 9601 ---------- --caauuaau (gauuuu--g ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcu aaguuaaggu ggcagagccg g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.thoms 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Gazella thomsoni. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gazella thomsoni. ORGANISM Mitochondrion Gazella thomsoni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86501 LOCUS GAZMTTGRG 2678 bp ds-DNA ORG 14-MAY-1992 DEFINITION Gazella thomsoni mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86501 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Gazella thomsoni (chromosome Mitochondrion Gazella thomsoni) liver DNA. ORGANISM Mitochondrion Gazella thomsoni Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Antilopini. REFERENCE 1 (bases 1 to 2678) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1023 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1024..1090 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1091..2659 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2660..>2678 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 1024 a 553 c 464 g 637 t ORIGIN BASE COUNT 616 a 315 c 272 g 385 t 9187 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAUA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UUAuccccaa ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auucu---- 961 -------<-- -----aaca- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCGAU AGAG-GAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaaaa auaua----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaauc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GCaaaa-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUACU UAU-GAA-CA GUUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----acuaa) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUA- UAAGUAG-AG 2881 GU(G-AAAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-AUAA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< gauaccaaaa 3121 aua------- uaaacaaaua u-acuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------cU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aUGG(AUA -CAA)CCU-U AACUA-G-ag -ag-UAA--- 3541 --gauuuagc aaaacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cCAA--cuc| C--U-AG|-- -------acc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acu aCUGG-AC|- UA-CUCUAUU A--------- 4501 ---------- ---------- (uaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---uaa--- ---------- ---------- 4741 ---------- -----)---- ----c-|UUC U-ccuu-GCA UAU--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-cc cugacu---- ---------- 4861 ---auuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AAUGC--- ----(acc-c ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuccca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aac)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AGA CAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-UUA GUU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa aag--aaacu uaacc(a-cu 7561 aa)ggga-ua acacu----- aaucucua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-A-CU -AA---C-AG UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aaca-agac( -acacaa--- )gucaa-auu -gaacu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a au)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----auga- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaaa-> 9541 ---------- ---------- aggg-gccuu aaac------ ---------- ---------- 9601 ---------- --caauuaau (gacucc--a ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagcaa a--)-gggcu uaguuaaggu ggcagagccg g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.pygar 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Damaliscus pygargus str. was Damaliscus dorcas. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Damaliscus pygargus str. was Damaliscus dorcas. ORGANISM Mitochondrion Damaliscus pygargus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86499 LOCUS DAAMTTGRG 2674 bp ds-DNA ORG 14-MAY-1992 DEFINITION Damaliscus dorcas mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86499 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Damaliscus dorcas (chromosome Mitochondrion Damaliscus dorcas) liver DNA. ORGANISM Mitochondrion Damaliscus dorcas Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Alcelaphini. REFERENCE 1 (bases 1 to 2674) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1021 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1022..1088 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1089..2655 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2656..>2674 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 989 a 596 c 489 g 600 t ORIGIN BASE COUNT 597 a 340 c 285 g 364 t 9189 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAUA 301 |UCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAccuaaa- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-uaAA- -GUAU-A(-G GAGA)UAGAA -Auucu---- 961 -------<-- ----aaaca- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAC-GA- 1681 UGaaagaaag aaaauc---- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aca-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACAA GCagaa-ac- 2101 uuaacgaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 ac--gaCCCG AA-ACCAG-A CG-AGCUACU UAU-AGA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auca-) ---------- 2821 -GAACUAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUCUG- UAAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGG AA-AUG-AAU 2941 (-CUAA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aga------- caaacaaauc ucacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aCGG(AUA -CAA)CCU-U CACUA-G-ag -ag-cAA--- 3541 --gaacccaa aacacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cUAA--cuc| C--U-AG|-- -------uac u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------agu aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (caaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGUA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-cccc-GCA CAA--guuua a|----guca 4801 guauc---ug ---------- ----(---au ag)u-a|-uc cugacu---- ---------- 4861 ---acuaa-- -cggc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -accg--|-- 6481 -u-UAAUCC- -(AACACA)G G|AGUGC--- ----(auu-u ------)--- ----AGGAA| 6541 |---AGAU-U U--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-aucccca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aac)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----GAA CAAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-CUG AUC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagag aaca-aaacc uaacc(a-cc 7561 aa)ggga-ca acaac----- acuacuua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-UC -AG---C-AG UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|A |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacc-agac( -cuacaa--- )gucaa-auc -aaauu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---auuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ac)--|---- 9001 UUGAUCAAC- |GGA-AUAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CGAU GG-UG(--CA -GC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaaa-> 9541 ---------- ---------- aagc-gccuu aaac------ ---------- ---------- 9601 ---------- --cgauuaau (gaccac--a ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcu uaguuaaggu ggcagagccc g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.hircu 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Capra hircus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Capra hircus. ORGANISM Mitochondrion Capra hircus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M55541 LOCUS GOTMTTGRG 2682 bp ds-DNA ORG 05-FEB-1991 DEFINITION Capra hircus Phe-, Val-, and Leu- (5' end) tRNA, and 12S and 16S ribosomal RNA genes. ACCESSION M55541 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Capra hircus brain mitochondrial cell line JM109 DNA, clone pCHIMR 3.4-15. ORGANISM Mitochondrion Capra hircus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae. REFERENCE 1 (bases 1 to 2682) AUTHORS Kraus,F. and Miyamoto,M.M. TITLE Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences JOURNAL Systematic Zoology (1990) In press STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..68 /gene="Phe-tRNA" /product="transfer RNA-Phe" rRNA 69..1024 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1025..1091 /gene="Val-tRNA" /product="transfer RNA-Val" rRNA 1092..2663 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2664..2682 /gene="Leu-tRNA" /partial /product="transfer RNA-Leu" BASE COUNT 996 a 579 c 472 g 635 t ORIGIN BASE COUNT 590 a 321 c 270 g 391 t 9203 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAUA 301 |UCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAcccca-- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ----aaaua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAU-GA- 1681 UGaaagaaaa agaauu---- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACGA GCaaaaaac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUACU CAU-GGG-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auca-) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACCCA- UAAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-UUUA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- uaaauaaauu uuacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUU 3481 CAG)CCUUUU AG-AA----- --aUGG(AUA -CAA)CCU-U CACUA-G-ag -ag-UAA--- 3541 --gacuuuac aacacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cUAA--cuc| C--U-AG|-- -------acc u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- CA-CUCUAUU A--------- 4501 ---------- ---------- (uuaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-cccu-GCA CAA--guuua a|----guua 4801 guauc---ug ---------- ----(---au aa)u-a|-uu cugacu---- ---------- 4861 ---guuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(acc-c ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuucca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua aac)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG AAU----GAA UUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-CUA GUC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaagaa au---aaauu uaacc(a-cc 7561 aa)ggga-ua acaac----- auccuuua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-CU -AG---C-AG UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAGAGAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -uuacaa--- )gucaa-auc -aaauu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aaa ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaca-> 9541 ---------- ---------- aagc-gccuu aaac------ ---------- ---------- 9601 ---------- --caauuaau (gacccu--a ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcc ua~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.aries 10775 bp RNA RNA 01-AUG-1998 DEFINITION Mitochondrion Ovis aries.; . ACCESSION AF010406 KEYWORDS . SOURCE Mitochondrion Ovis aries. ORGANISM Mitochondrion Ovis aries. REFERENCE 1 (bases 1 to 16616) AUTHORS Hiendleder,S., Mainz,K., Plante,Y. and Lewalski,H. TITLE are derived from two different ancestral maternal sources: no evidence for contributions from Urial and Argali sheep Analysis of mitochondrial DNA indicates that domestic sheep JOURNAL J. Hered. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 16616) AUTHORS Hiendleder,S., Wassmuth,R. and Lewalski,H. TITLE Complete mitochondrial DNA sequence of the domestic sheep (Ovis aries) and comparative data from another haplotype JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 16616) AUTHORS Hiendleder,S., Wassmuth,R. and Lewalski,H. TITLE Direct Submission JOURNAL Submitted (26-JUN-1997) Animal Breeding and Genetics, Justus-Liebig-University, Ludwigstr. 21B, Giessen 35390, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF010406 BASE COUNT 592 a 327 c 269 g 386 t 9201 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAUA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UUAcccua-- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auucu---- 961 -------<-- ----aaaca- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAU-GA- 1681 UGaaagaaaa aaauc----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACGA GCaaaaaac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUACU UAU-AGA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auua-) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUCCA- UAAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-UUUA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- caaauaaauc ccacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aUGG(GUA -CAA)CCU-U CACUA-G-ag -ag-UAA--- 3541 --gaucuaaa aauacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccaa--cuc| c--u-ag|-- -------auu u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-UUCUAUU A--------- 4501 ---------- ---------- (cuaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAG-A AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuc-GCA CAA--guuua a|----guca 4801 guaac---ug ---------- ----(---au aa)u-a|-cc cugacc---- ---------- 4861 ---guuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(acc-c ------)--- ----AGGAA| 6541 |---AGAU-U C--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ca cuAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-aucccua- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua aac)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAA UCAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-GUA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aggaaa au---aaauu caacc(a-cc 7561 aa)ggga-ua acaac----- acuccuua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -AA---C-AG UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAGAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -uaacaa--- )gucaa-acc -aaacc---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaaca-> 9541 ---------- ---------- aagc-gccuu aaac------ ---------- ---------- 9601 ---------- --caauuaau (gacuuu--a ucuua)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcc ca~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.maxwe 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cephalophus maxwellii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cephalophus maxwellii. ORGANISM Mitochondrion Cephalophus maxwellii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86498 LOCUS CEPMTTGRG 2681 bp ds-DNA ORG 14-MAY-1992 DEFINITION Cephalophus maxwelli mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86498 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Cephalophus maxwelli (chromosome Mitochondrion Cephalophus maxwelli) liver DNA. ORGANISM Mitochondrion Cephalophus maxwelli Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Cephalophinae; Cephalophini. REFERENCE 1 (bases 1 to 2681) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..69 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 70..1025 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1026..1092 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1093..2662 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2663..>2681 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 1001 a 580 c 464 g 636 t ORIGIN BASE COUNT 598 a 328 c 276 g 387 t 9186 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAUU 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAuccuaa- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ----aaaca- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCCAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAU-GA- 1681 UGaaagaaua aauu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AGAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-A UACCUU(UU- GCAUA)AUGA |GUU-AACUA GCaaaaaac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUACU UAC-AGA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuaa) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUCUA- UAAGUAG-AG 2881 GU(G-ACAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-UUUA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- uacacaaauu ccacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aCGG(AUA -CAA)CCU-U AACUA-G-ag -ag-UAA--- 3541 --gauuuaac aacacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- GA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cAAg--cuc| C--U-AA|-- -------ccc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-CUCUAUU A--------- 4501 ---------- ---------- (cuaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 GC|AUGAGUA -ACAA-GAA- a--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuu-GCA UAA--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-cc cugacc---- ---------- 4861 ---auuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AAUGC--- ----(acu-u a-----)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auccuca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a agc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAA CAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-UUA GUC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--gagaa aaua-aauuc uaacc(a-cc 7561 aa)ggga-ca gcaau----- auccucca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-CU -AA---C-AG CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -ccacaa--- )gucaa-auc -aaauu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----auga- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaac-> 9541 ---------- ---------- aagc-gccuu aaau------ ---------- ---------- 9601 ---------- --uaauuaau (gauauc--a ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcu uaguuaaggu ggcagagccc g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.K.ellip 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Kobus ellipsiprymnus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Kobus ellipsiprymnus. ORGANISM Mitochondrion Kobus ellipsiprymnus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86497 LOCUS KOBMTTGRG 2678 bp ds-DNA ORG 14-MAY-1992 DEFINITION Kobus ellipsiprymnus mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86497 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Kobus ellipsiprymnus (chromosome Mitochondrion Kobus ellipsiprymnus) liver DNA. ORGANISM Mitochondrion Kobus ellipsiprymnus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Reduncini. REFERENCE 1 (bases 1 to 2678) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..66 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 67..1019 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1020..1086 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1087..2659 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2660..>2678 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 986 a 575 c 480 g 637 t ORIGIN BASE COUNT 582 a 331 c 290 g 389 t 9183 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAUA 301 |CCU--AGC| CCG------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UUAuccuca- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ----aaaua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAU-GA- 1681 UGaaagaaag aauu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AGAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |GCU-AACUA GCaaaaaac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuucagcua 2701 agu-uaCCCG AA-ACCAG-A CG-AGCUACC UGU-AAA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuaa) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUA- UAGGUAG-AG 2881 GU(G-ACAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGG AG-AUG-AAU 2941 (-CUUA)GUU CA-GC-UUUA AAG-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aacc-----c caaacaaguu uuacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAA-AGUU AGUCU--AA- AA-GG(-GUA 3481 CAG)CCUUUU AG-AA----- --aUGG(AUA -CAA)CCU-U AACUA-G-ag -ag-UAA--- 3541 --gacuuaac aguacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cUAA--cuc| C--U-AA|-- -------ccc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-UUCUAUU A--------- 4501 ---------- ---------- (caaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGUG AUAAUGU-UA 4681 GC|AUGAGUA -ACAA-GAA- a--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuu-GCA UAA--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-cu cugacu---- ---------- 4861 ---auuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(GACACA)G G|GAUGC--- ----(acu-u ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-aucucua- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCCC(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAA CAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--A-CUA GCC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa aa---uaagu cuacc(a-cc 7561 aa)ggga-ca acaaa----- auucucua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-CU -AA---C-AG UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gaca-agac( -cuacaa--- )gucga-auc -aaacc---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAAa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a aa)--|---u 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CGAU GG-UG(--CA -GC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac cu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaac-> 9541 ---------- ---------- aagc-gccuu aaau------ ---------- ---------- 9601 ---------- --uaacuaau (gauauu--a ucuua)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaca a--)-gggcu uaguuaaggu ggcagagccg g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.gazel 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Oryx gazella. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Oryx gazella. ORGANISM Mitochondrion Oryx gazella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86500 LOCUS ORYMTTGRG 2680 bp ds-DNA ORG 14-MAY-1992 DEFINITION Oryx gazella mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86500 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Oryx gazella (chromosome Mitochondrion Oryx gazella) liver DNA. ORGANISM Mitochondrion Oryx gazella Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Cephalophinae; Hippotragini. REFERENCE 1 (bases 1 to 2680) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1023 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1024..1090 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1091..1661 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2662..>2680 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 991 a 581 c 475 g 633 t ORIGIN BASE COUNT 588 a 335 c 286 g 381 t 9185 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CACA 301 |UCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAG 841 UAA(AACA)U UUAcccuag- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-uAAA- -GUAU-A(-G GAGA)UAGAA -AUucu---- 961 -------<-- ----aaaca- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AUA-- ----GUACC( -GCAA-)GGG ---AAC-GA- 1681 UGaaagaaaa aaguc----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuagcc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |GUU-AACGA GCagaagac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agc-aaCCCG AA-ACCAG-A CG-AGCUACU CAU-GGA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auua-) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUCCA- UAAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGG AA-AUG-AAU 2941 (-CUUA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- uaaacaaauu cuacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aCGG(AUA -CAA)CCU-U CACUA-G-ag -ag-UAA--- 3541 --aauuuaac aauacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cCAA--cuc| C--U-AG|-- -------ccc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-CUCUAUA A--------- 4501 ---------- ---------- (uaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuc-GCA CAA--guuua a|----auca 4801 guacc---ug ---------- ----(---au aa)u-a|-ga cugauu---- ---------- 4861 ---guuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(acu-c ------)--- ----AGGAA| 6541 |---AGAU-U C--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuccca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g aau)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----GAA CCAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAC UA|--A-CUA GCU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagag aac--aaacu uaauc(a-cc 7561 aa)gaga-ua acagc----- acucugua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -AG---C-AG UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -ccacaa--- )gucaa-auc -aaacu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au au)--|---- 9001 UUGAUCAAC- |GGA-AUAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- gaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaaua-> 9541 ---------- ---------- aagc-gccuc agac------ ---------- ---------- 9601 ---------- --caauuaau (gaucuu--a ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcc caguuaaggu ggcagagccg g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.unico 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cervus unicolor. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cervus unicolor. ORGANISM Mitochondrion Cervus unicolor. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M35875 LOCUS CEUMTFVLA 2682 bp ds-DNA ORG 15-SEP-1990 DEFINITION C.unicolor mitochondrial Phe-, Val-tRNA, 12S, and 16S rRNA genes, complete, and Leu-tRNA gene, 5' end. ACCESSION M35875 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE C.unicolor liver mitochondrion cell line DH-alpha-5 DNA, clone PCUNMR 9.0-18. ORGANISM Mitochondrion Cervus unicolor Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae. REFERENCE 1 (bases 1 to 2682) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..69 /note="Phe-tRNA" rRNA 70..1024 /note="12S ribosomal RNA" tRNA 1025..1091 /note="Val-tRNA" rRNA 1092..2663 /note="16S ribosomal RNA" tRNA 2664..>2682 /note="Leu-tRNA" BASE COUNT 1010 a 555 c 467 g 650 t ORIGIN BASE COUNT 598 a 308 c 270 g 396 t 9203 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAU 301 |UCU--AGC| CCG------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UUAuucaaca a--------- ---------- ---------- ---------- 901 ------(--- --)------- |-ca-aaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- -----aaua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaaaa aaauc----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |GUU-AACUA GUaaaa-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuucagcua 2701 agu-acCCCG AA-ACCAG-A CG-AGCUACU UAU-GAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aucga) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUG- UAAGUAG-AG 2881 GU(G-AAAC) GCC-CAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-AUUA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- ugaacaaauu auaauguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aUGG(AUA -CAA)CCU-U AACUA-G-ag -ag-UAA--- 3541 --guuuuaac auuaaac-c- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uCAA--cuc| C--U-AA|-- -------ucu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (-aga---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- g--------- (---uaa--- ---------- ---------- 4741 ---------- -----)---- ----c-|UUC U-cccc-GCA UAA--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-cu cugacu---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(GACACA)G G|AAUGC--- ----(acu-u a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ca cUAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auaacua- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a acc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AUA CUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--C-UUA GCC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa ac---aaauu ucauu(a-cc 7561 aa)ggaaaca acaac----- acucuuua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -AA---C-AG CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAGAAAAC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -cuacaa--- )gucga-auc -acaca---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---uuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACC-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaau-> 9541 ---------- ---------- aagc-gccuu aaau------ ---------- ---------- 9601 ---------- --uaguuaau (gauauc--a ucuua)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaga a--)-gggcu uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.inerm 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Hydropotes inermis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hydropotes inermis. ORGANISM Mitochondrion Hydropotes inermis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M35876 LOCUS HYRMTFVLA 2680 bp ds-DNA ORG 15-SEP-1990 DEFINITION H.inermis mitochondrial Phe-, Val-tRNA, 12S, and 16S rRNA genes, complete, and Leu-tRNA gene, 5' end. ACCESSION M35876 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE H.inermis liver and spleen mitochondrion cell line DH-alpha-5 DNA, clone PHINMR 4.0-6. ORGANISM Mitochondrion Hydropotes inermis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae. REFERENCE 1 (bases 1 to 2680) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable [or printed] sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..70 /note="Phe-tRNA" rRNA 71..1027 /note="12S ribosomal RNA" tRNA 1028..1094 /note="Val-tRNA" rRNA 1095..2661 /note="16S ribosomal RNA" tRNA 2662..>2680 /note="Leu-tRNA" BASE COUNT 1010 a 526 c 468 g 676 t ORIGIN BASE COUNT 595 a 298 c 266 g 408 t 9208 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAU 301 |UCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 CAA(AGCA)U UUAucuaua- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ----uaaua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAU-GA- 1681 UGaaagaaga aaauu----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUC-G UACCUU(UU- GCAUA)AUGA |GUU-AACUA GUaaaa-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agu-acCCCG AA-ACCAG-A CG-AGCUACU UAU-AAA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aucaa) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUA- UAAGUAG-AG 2881 GU(G-AAAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-AUUA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- uaaacaaauc acacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aUGG(AUA -CAA)CCU-U GACUA-G-ag -ag-UAA--- 3541 --aauuuaau aacacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uCAA--cuc| C--U-AG|-- -------cuu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-AUCUAU- ---------- 4501 ---------- ---------- (aaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- g--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----a-|UUC U-cccu-GCA UAA--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-uc cugacu---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(AACACA)G G|AAUGC--- ----(acu-u a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ca cUAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auaacua- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a acc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UA-GUAU GAAUGGCCAA A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AUA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--C-UUA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa ac---aaacu uaacc(a-cu 7561 aa)ggugaca acaau----- auucucua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -AA---C-AG CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -cuacaa--- )gucgc-auc -gcaca---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---uuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----gugu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACC-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac ua-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---aaaaa-> 9541 ---------- ---------- aagc-gccuu aacc------ ---------- ---------- 9601 ---------- --caauuaau (gaucuc--a ucuca)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcu uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.reeve 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Muntiacus reevesi. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Muntiacus reevesi. ORGANISM Mitochondrion Muntiacus reevesi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M35877 LOCUS MMUMTFVLA 2682 bp ds-DNA ORG 15-SEP-1990 DEFINITION M.reevesi mitochondrial Phe-, Val-tRNA, 12S, and 16S rRNA genes, complete, and Leu-tRNA gene, 5' end. ACCESSION M35877 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu-transfer RNA; transfer RNA-Phe; transfer RNA-Val. SOURCE M.reevesi liver and brain mitochondrion cell line JM109 DNA, clone PMREMR 4.8-16. ORGANISM Mitochondrion Muntiacus reevesi Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervulinae. REFERENCE 1 (bases 1 to 2682) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..69 /note="Phe-tRNA" rRNA 70..1028 /note="12S ribosomal RNA" tRNA 1029..1196 /note="Val-tRNA" rRNA 1197..2664 /note="16S ribosomal RNA" tRNA 2659..>2682 /note="Leu-tRNA" BASE COUNT 1001 a 543 c 463 g 675 t ORIGIN BASE COUNT 596 a 306 c 261 g 405 t 9207 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAU 301 |UCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 UAA(AACA)U UUAccuacca ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-aaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- -----aaua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AUA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaaaa aaauc----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AGAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |GUU-AACUA GCaaaa-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agu-acCCCG AA-ACCAG-A CG-AGCUACU UAU-GAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aucga) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUG- UAAGUAG-AG 2881 GU(G-AAAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-AUUA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 aua------- uuaacaaauu auaauguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AA----- --aCGG(AUA -CAA)CCU-U AAUUA-G-ag -ag-UAA--- 3541 --aacuuaau acaaauc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(UUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uCAA--cuc| C--U-AA|-- -------ccc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-AUCUAU- ---------- 4501 ---------- ---------- (uaaaa--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (--guau--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccu-GCA UGA--guuua a|----guca 4801 guauc---ug ---------- ----(---au aa)u-a|-uu cugacu---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(AACACA)G G|AAUGC--- ----(acu-u a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ca cUAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a acc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AUA UUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--C-UUA GCC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa ac---aaaau uuauu(u-cu 7561 aa)ggaaaca acaac----- auucucua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -AA---C-AG CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -ccacaa--- )gucaa-auc -acaua---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cucAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACC-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaac-> 9541 ---------- ---------- aagc-gccuu aaau------ ---------- ---------- 9601 ---------- --uaauuaau (gauauu--a ucuua)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(uagaaa a--)-ggguu uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.virgi 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Odocoileus virginianus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Odocoileus virginianus. ORGANISM Mitochondrion Odocoileus virginianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M35874 LOCUS ODOMTFVLA 2677 bp ds-DNA ORG 15-SEP-1990 DEFINITION O.virginianus mitochondrial Phe-, Val-tRNA, 12S and 16S rRNA, genes, complete, and Leu-tRNA gene, 5' end. ACCESSION M35874 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE O.virginianus brain mitochondrial cell line JM109 DNA, clone POVIMR 4.1-19. ORGANISM Mitochondrion Odocoileus virginianus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae. REFERENCE 1 (bases 1 to 2677) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..69 /note="Phe-tRNA" rRNA 70..1022 /note="12S ribosomal RNA" tRNA 1023..1091 /note="Val-tRNA" rRNA 1092..2658 /note="16S ribosomal RNA" tRNA 2659..>2677 /note="Leu-tRNA" BASE COUNT 1000 a 550 c 467 g 660 t ORIGIN BASE COUNT 593 a 313 c 269 g 392 t 9208 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAC 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----CAAA 841 UAA(AACA)U UUAuccacug ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-aaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ----agaua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaaaa aauu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |GUU-AACUA GUaaaa-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuucagcua 2701 agu-acCCCG AA-ACCAG-A CG-AGCUACU UAU-GAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aucga) ---------- 2821 -GAAUCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUCA- UAAGUAG-AG 2881 GU(G-AAAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGG AA-AUG-AAU 2941 (-AUUA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< aauaccaaua 3121 aua------- uaaacaaaua u-acuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-GG(-GAA 3481 CAG)CCUUUU AG-AA----- --aCGG(AUA -CAA)CCU-U AACUA-G-ag -ag-UAA--- 3541 --aaccugau aauacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CCAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uCAA--cuc| C--U-AG|-- -------ccu u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-AUCUAU- ---------- 4501 ---------- ---------- (aaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- g--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----c-|UUC U-cccc-GCA CGA--guuua a|----guca 4801 guacc---ug ---------- ----(---au aa)u-a|-uu cugacc---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UGAUCC- -(AACACA)G G|AGUGC--- ----(acu-u a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ca cCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auaacua- ------)--- ---------- 6901 ------GUA- UUG-GGGGCA UUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a acc)------ ---------- ---------| 7141 ---GUUA-AA C-|G--C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAA A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----ACU AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAC UA|--C-UUA GUC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa a----uaaau ucacu(aacc 7561 aa)ggaaaca acaau----- auucuuca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-CU -AA---C-AG CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAGAAAAUC- )CUCC-GA|G |c|gau--|< 8221 -uuuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -ucacaa--- )gucaa-auc -acaca---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----acgu- 9301 >--------- ---------- ---aUUU-CU CU--(CAGU- AC(-GAAA)G GACC-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- agggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---agaac-> 9541 ---------- ---------- aagc-gccuu aaau------ ---------- ---------- 9601 ---------- --uaacuaau (gauuua--c ucuua)a-uu -ag------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaaa a--)-gggcu uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.napu 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Tragulus napu. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Tragulus napu. ORGANISM Mitochondrion Tragulus napu. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M55539 LOCUS TRGMTTGRG 2691 bp ds-DNA ORG 05-FEB-1991 DEFINITION Tragulus napu mitochondrion Phe-, Val, and Leu-tRNA (5' end) and 12S and 16S ribosomal RNA genes. ACCESSION M55539 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Tragulus napu mitochondrial cell line DH-alpha-5 DNA. ORGANISM Mitochondrion Tragulus napu Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Tragulina; Tragulidae. REFERENCE 1 (bases 1 to 2691) AUTHORS Kraus,F. and Miyamoto,M.M. TITLE Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences JOURNAL Systematic Zoology (1990) In press STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..70 /gene="Phe-tRNA" /product="transfer RNA-Phe" rRNA 71..1030 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1031..1097 /gene="Val-tRNA" /product="transfer RNA-Val" rRNA 1098..2672 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2673..2691 /gene="Leu-tRNA" /partial /product="transfer RNA-Leu" BASE COUNT 974 a 600 c 510 g 607 t ORIGIN BASE COUNT 573 a 342 c 288 g 372 t 9200 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAG 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----CAAU 841 CAA(AACA)U UUAaucaugc ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-aaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ---aaaac-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AUA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaagaaua auuua----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |GUU-AACUA GCauaa-ac- 2101 auagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuugaguua 2701 uac-caCCCG AA-ACCAG-A CG-AGCUACC UGC-GAG-CA GUUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----acca-) ---------- 2821 -GAACCAA-C CC-AUCUAU( GUGGCAA-A) AUAG-UGGGA --AGACUUG- UAGGUAG-AG 2881 GU(G-ACAC) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGG AA-AUG-AAU 2941 (-CUAA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccuaaa 3121 agc------- cacacaa-cu uuaauguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AGUCU--AA- AA-GG(-GUA 3481 CAG)CCUUUU AG-AA----- --aAGG(AUA -CAA)CCU-U CGCUA-G-ag -ag-UAA--- 3541 --aaaccuaa cuucacc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uAAA--cuc| C--U-AG|-- -------ccc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------ccu aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (--guag--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccu-GCA UAA--gcuua c|----guca 4801 guaac---ug ---------- ----(---au aa)u-a|-uc cugaca---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|UAUGC--- ----(acu-u a-----)--- ---agGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCAAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AUC CUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CCC ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagag ca---acuuu caacc(g-cc 7561 aa)ggga-ca acaaag---- ccucuauc-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UG -GA---C-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|G |c|gau--|< 8221 uacuaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -cuacaa--- )gucaa-auc -gcuau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---caaAU UGAUC-CAAa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa cc)--|---u 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CAAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----auac- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- ggggcca-cc uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaaag-> 9541 ---------- ---------- aagc-gccuc aagu------ ---------- ---------- 9601 ---------- --caauuaau (gauauc--a ucuaa)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(gagaac a--)-gggcu au~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.imber 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Tragelaphus imberbis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Tragelaphus imberbis. ORGANISM Mitochondrion Tragelaphus imberbis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M86493 LOCUS TAGMTTGRG 2686 bp ds-DNA ORG 14-MAY-1992 DEFINITION Tragelaphus imberbis mitochondrial 12S and 16S ribosomal RNAs and Phe-, Val-, and Leu-tRNA genes. ACCESSION M86493 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Tragelaphus imberbis (chromosome Mitochondrion Tragelaphus imberbis) liver DNA. ORGANISM Mitochondrion Tragelaphus imberbis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Tragolaphini. REFERENCE 1 (bases 1 to 2686) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1024 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1025..1091 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1092..2667 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2668..>2686 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 1020 a 561 c 467 g 638 t ORIGIN BASE COUNT 614 a 320 c 276 g 385 t 9180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |UCU--AGC| CCG------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAccucuca a--------- ---------- ---------- ---------- 901 ------(--- --)------- |-uc-uAAA- -GUAU-A(-G GAGA)UAGAA -AUuuu---- 961 -------<-- ----aaaua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAU-GA- 1681 UGaaagaaag aaauuu---- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GCacaaaac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuuagcua 2701 agu-aaCCCG AA-ACCAG-A CG-AGCUACU CAC-AAA-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----accaa) ---------- 2821 -GAACUAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUA- UGAGUAG-AG 2881 GU(G-ACAU) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AUG-AAU 2941 (-CUCA)GUU CA-GC-UUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaccaaaa 3121 auu------- uaaauaaauu ccacuguau- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AGUU AAUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-AU----- -aaAGG(AUA -CAA)CCU-U AAAUA-G-ag -ag-UAA--- 3541 --gaucuaaa aacacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cCAA--cuc| C--U-AG|-- -------ccc u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (aaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (---uau--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-cccu-GCA UGA--gcuua a|----auca 4801 guaac---ug ---------- ----(---au aa)u-a|-cc cugauu---- ---------- 4861 ---auuaa-- -cagu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(acu-u a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-aucacca- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aua)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACUUU CC-CG(U-GA AGAGG)CGGG AAU----AAA CUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAC UA|--A-UCA GUC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aagaa aaua-aacua auauu(g-cu 7561 ca)ggaaaua acaaua---- uuuuccua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-C-CU -GA---C-AG UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|A |c|gau--|< 8221 -uauaaa--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gacu-agac( -cuacaa--- )gucaa-auc -acuca---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 g|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-AGAU GG-UG(--CA -AC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----uaugu- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- uaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---aaaau-> 9541 ---------- ---------- aagc-gccuc aaag------ ---------- ---------- 9601 ---------- --uaacuaau (gauccc--g ucuca)a-uu -ag------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaga ca-)-gggcu caguuaaggu ggcagagccg g~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (20)-Suifo 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.H.amphi 10775 bp RNA RNA 07-JAN-1999 DEFINITION Mitochondrion Hippopotamus amphibius.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hippopotamus amphibius. ORGANISM Mitochondrion Hippopotamus amphibius. REFERENCE 1 (bases 1 to 16616) AUTHORS Ursing,B.M. and Arnason,U. TITLE Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ010957 LOCUS HAAJ10957 16407 bp DNA circular MAM 07-JAN-1999 DEFINITION Hippopotamus amphibius complete mitochondrial DNA sequence. ACCESSION AJ010957 NID g4127863 KEYWORDS 12S rRNA gene; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu (CUN) gene; tRNA-Leu (UUR) gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser (AGY) gene; tRNA-Ser (UCN) gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE hippopotamus. ORGANISM Mitochondrion Hippopotamus amphibius Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Artiodactyla; Suiformes; Ancodonta; Hippopotamidae; Hippopotamus. REFERENCE 1 (bases 1 to 16407) AUTHORS Ursing,B.M. and Arnason,U. TITLE Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade JOURNAL Unpublished REFERENCE 2 (bases 1 to 16407) AUTHORS Ursing,B.M. TITLE Direct Submission JOURNAL Submitted (04-SEP-1998) Ursing B.M., Division of Evolutionary Molecular Systematics, Department of Genetics, Solvegatan 29, S-223 62 Lund, SWEDEN FEATURES Location/Qualifiers source 1..16407 /organism="Hippopotamus amphibius" /mitochondrion /db_xref="taxon:9833" rRNA 72..1039 /gene="12S rRNA" gene 72..1039 /gene="12S rRNA" rRNA 1109..2673 /gene="16S rRNA" gene 1109..2673 /gene="16S rRNA" BASE COUNT 5372 a 4694 c 2289 g 4052 t BASE COUNT 592 a 348 c 267 g 358 t 9210 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAGA 841 UAA(AGCA)U UUAaccacca a--------- ---------- ---------- ---------- 901 ------(--- --)------- |-cu-uaaA- -GUAU-A(-G GAGA)UAGAA -Aucu----- 961 -------<-- ---gaaacca uu-------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCAAU AGAG-AUA-- ----GUACC( -GUAA-)GGG ---AAU-GA- 1681 UGaaagaagc aa-ca----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucacac 2041 --)------- -----CUU-G UACCUU(UC- GCAUA)AUGA |UUU-AACUA GCaaaa-cc- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuaagcua 2701 agc-caCCCG AA-ACCAG-A CG-AGCUACU UAU-GAA-Ca guuu------ ---------- 2761 -(-------- ---------- ---------- ---------- -----acca) ---------- 2821 -GAACAAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAAA --AGAUUUA- UAAGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-AAG-AAU 2941 (-CUAA)GUU CA-AU-UUCA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccaaa 3121 agcc-----c aaaucaagcc uaau------ -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AUUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-ac----a --aAGG(AUA -CAA)CCU-U GAcua-g-ug -ag-UAA--- 3541 --auucaaac aacacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAUAG C(--GUUCAA )GC|-UCG-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- c-aa--cuc| c--u-ag|-- -------ccu aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- --------cu aCUGG-AC|- UA-UUCUAUU C--------- 4501 ---------- ---------- (aaac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUACUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (acaa----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccca-GCA CAA--gccua c|----guca 4801 gcaa----cu ---------- ----(-gaua au)a-u|--a cugaca---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 caaguaaau( auaaccuaac acuaaaac-- -----)auuu accccauaca ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-uaacCC- -(AACACA)G G|CGUGC--- ----(accca ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAAAAG -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-aucacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a acu)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCCU(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUGCU UUCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAU ACAAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUC--AAU UA|--G-CUG ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- auaaaaacaa aauaaaccc( 7561 gcaa---)gg cacaauaaaa uccuau--a- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UC -AG---U-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA AAAAGAAUC- )CUCC-GA|G |u|ga---|< 8221 uaaaa----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucu-agac( -ucacca--- )gucaa-aac ---auaac-- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-a 8881 c|--acucAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aac cu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----auac-- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U gaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --ccaau--> 9541 ---------- ---------- aagc-gccuu aa-------- ---------- -------aac 9601 ---------- --uaauuaau (gauaua--g ucuua)a-cu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 ccu(agacc- ---)agggca ca~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.scrof 10775 bp RNA RNA 05-OCT-1998 DEFINITION Mitochondrion Sus scrofa.; complete sequence; mitochondria. ACCESSION AJ002189 KEYWORDS complete sequence; mitochondria. SOURCE Mitochondrion Sus scrofa. ORGANISM Mitochondrion Sus scrofa. REFERENCE 1 (bases 1 to 16679) AUTHORS Ursing,B.M. and Arnason,U. TITLE The complete mitochondrial DNA sequence of the pig JOURNAL J. Mol. Evol. 47 (3), 302-306 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16679) AUTHORS Ursing,B.M. TITLE Direct Submission JOURNAL Submitted (29-OCT-1997) Ursing B.M., Lund University, Department of Genetics, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ002189 BASE COUNT 611 a 329 c 259 g 370 t 9206 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAA 301 |GCU--AGC| UCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UCAccuaac- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uuaucc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCUAU AGAG-AUA-- ----GUACC( -GUAA-)GG- ---AAA-GA- 1681 UGaaagaaua aaaua----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGG |UUU-AACCA GAaaaa-au- 2101 cuaacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuuagcua 2701 gau-acCCCG AA-ACCAG-A CG-AGCUACC CAU-GAG-Ca guuu------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaaa) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUG- UAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--GAG AA-A-G-AAU 2941 (-UUUA)GUU CA-AC-CUUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --auacccca 3121 aaaa-----c ccuaaauucc aau------- -guau----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAG-AGAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-aa----- --ACGG(AUA -CAA)CCU-U GAcua-g-ag -ag-UAA--- 3541 --aucuuaau acuacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- GA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- caaa--cuc| c--u-ag|-- -------ccc aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aCCGG-AC|- UA-AUCUAUu g--------- 4501 ---------- ---------- (aaac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (gccu----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccuc-GCA CAC--gcuua c|----auca 4801 guaa----cu ---------- ----(-aaua au)a-u|--a cugaua---- ---------- 4861 ---auuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 ccaauaaac( caaaacaaca cuaaaac--- -----)guuu auuaauuaca ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uug--|-- 6481 -u-uaacCC- -(AACACA)G G|AGUGC--- ----(-acca ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cca)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-C AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|A|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAA AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUA UUC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- aaaguuaaac aacucaacc( 7561 acaaa--)gg gauaaaacau aacuuaaca- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-A-CU -AG---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAAACC- )CUCC-GA|G |u|ga---|< 8221 uuuua----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucu-agac( -aaacca--- )gucaa-aau --aaccauaa c--------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUCUAG 9061 AG(U--UCCU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-AAAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----auaa-- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U gggacca-ac cu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --cacaa--> 9541 ---------- ---------- acgc-gucuc -ag------- ---------- -------aga 9601 ---------- --uaauuaau (gauuua--a ucuua)a-cc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 ccu(agaac- ---)agggca ca~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Carni 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.famil 10775 bp RNA RNA 14-JAN-1999 DEFINITION Mitochondrion Canis familiaris.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Canis familiaris. ORGANISM Mitochondrion Canis familiaris. REFERENCE 1 (bases 1 to 16679) AUTHORS Kim,K.S., Lee,S.E., Jeong,H.W. and Ha,J.H. TITLE The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome JOURNAL Mol. Phylogenet. Evol. 10 (2), 210-220 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U96639 LOCUS CFU96639 16728 bp DNA circular MAM 14-JAN-1999 DEFINITION Canis familiaris mitochondrion, complete genome. ACCESSION U96639 NID g4154170 KEYWORDS . SOURCE dog. ORGANISM Mitochondrion Canis familiaris Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Carnivora; Fissipedia; Canidae; Canis. REFERENCE 1 (bases 1 to 16728) AUTHORS Kim,K.S., Lee,S.E., Jeong,H.W. and Ha,J.H. TITLE The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome JOURNAL Mol. Phylogenet. Evol. 10 (2), 210-220 (1998) MEDLINE 99097286 REFERENCE 2 (bases 1 to 16728) AUTHORS Kim,K.S., Lee,S.E., Jeong,H.W., Jeong,S.Y., Sohn,H.S. and Ha,J.H. TITLE Direct Submission JOURNAL Submitted (07-APR-1997) Genetic Engineering, Animal Genetics, 1370 Sankyuk-dong, Pukgu, Taegu 702-701, Korea FEATURES Location/Qualifiers source 1..16728 /organism="Canis familiaris" /mitochondrion /db_xref="taxon:9615" rRNA 1092..2673 /product="16S rRNA" BASE COUNT 5282 a 4264 c 2370 g 4812 t BASE COUNT 578 a 333 c 276 g 395 t 9193 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------AAAA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UUAguuaaac a--------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-aaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uaau--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGAGCGAU AGAG-AUA-- ----GUACC( -GUAA-)GGG ---AAU-GA- 1681 UGaaagacau cu-ua----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aca-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGA |ACU-AGCCA GAaaca-ac- 2101 uuaacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuaagcua 2701 agc-ucCCCG AA-ACCAG-A CG-AGCUACC CAU-AAA-Ca aucu------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaaa) ---------- 2821 -GGAUCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUG- UGGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UACCC--ACA GA-CAG-AAU 2941 (-UUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuaa 3121 aaaa-----a auaaaauuuu aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-AUAU AGUCU--AA- GA-AG(-GUA 3481 CAG)CUUCUU AG-aa----u --cAGG(AUA -CAA)CCU-U UAuua-g-ag -ag-UAU--- 3541 --auacuaau aucacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(UUAAAA 3781 GC-A)-GCCA -CCAA|U(U- GA)-|GAAAG C(--GUUCCA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- c-aa--cuc| c--u-aa|-- -------uua ua-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------ccc cCUGG-GU|- CA-UUCUAUU U--------- 4501 ---------- ---------- (aagu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGC-UA 4681 GU|AUGAGUA -ACAA-GAA- ---------- (ccauu---- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-cccc-GCA UAA--gcuua u|----auca 4801 ggaa----cg ---------- ----(-gaua ga)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 ucugauaau( aucaacccaa aaaugaugaa aua--)cuua uccacccca- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uug--|-- 6481 -u-uaacCC- -(AACACA)G G|UAUGC--- ----(auuca ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGGAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuucua- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGC-U<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cuu)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU CCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----ACC ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----aa cuuauggaua cuagauacc( 7561 uacaa--)gg ca---uaaca uaacaccauu auua------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -AG---C-AA UUUAGGUUG( 8161 GGG)UG-AC- C|UCGGAA(- --------UA UAAAAAAAC- )UCCC-GA|G |U|ga---|< 8221 uuaaa----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- auuu-agac( -ccacaa--- )gucaa-aau ---acaac-- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------uaau uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----auaca- 9301 >--------- ---------- --A-CCU-CC CC--(CAGU- AC(-GAAA)G GACA-)AGGG 9361 A--UG-<--- ---------- ---------- -------->U aaggccu-ac cu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --cacag--> 9541 ---------- ---------- aggc-gccuu aa-------- ---------- -------aac 9601 ---------- --uaauagau (gaaguc--a acuca)a-uc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ag 9961 ccc(gagaaa ag-)gggcuu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.F.catus 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Felis catus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Felis catus. ORGANISM Mitochondrion Felis catus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U20753 LOCUS FCU20753 17009 bp DNA circular MAM 02-DEC-1995 DEFINITION Felis catus mitochondrion, complete genome. ACCESSION U20753 KEYWORDS . SOURCE cat. ORGANISM Mitochondrion Felis catus Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Carnivora; Fissipedia; Felidae; Felis. REFERENCE 1 (bases 1 to 17009) AUTHORS Lopez,J.V., Culver,M., Cevario,S. and O'Brien,S.J. TITLE Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a nuclear mtDNA tandem repeat (Numt): Analysis of heterogeneous evolutionary rates JOURNAL Unpublished REFERENCE 2 (bases 1 to 17009) AUTHORS Lopez,J.V. TITLE Direct Submission JOURNAL Submitted (07-FEB-1995) Jose V. Lopez, Laboratory of Viral Carcinogenesis, PRI/DynCorp, Biological Carcinogenesis and Development Prog, Bldg 560, Room 11-21, NCI-Frederick Cancer Research and Development Center, Frederick, MD 21702-1201, USA COMMENT NCBI gi: 1098523 FEATURES Location/Qualifiers source 1..17009 /clone="pCmt.12, pCmt4.8" /organism="Felis catus" /mitochondrion /isolate="FCA-65" /sex="female" /cell_type="lymphocyte" /tissue_type="blood" /dev_stage="adult" tRNA 866..935 /product="tRNA-Phe" rRNA 936..1895 /product="12S rRNA" tRNA 1896..1963 /product="tRNA-Val" rRNA 1964..3537 /product="16S rRNA" tRNA 3538..3612 /product="tRNA-Leu (UUR)" CDS 3615..4571 /gene="ND1" /note="NCBI gi: 1098524" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 1" /translation="MFMINVLSLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYG LLQPIADAVKLFTKEPLRPLTSSMLMFIMAPILALTLALTMWIPLPMPYPLINMNLGV LFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF TLAMLITTQEYMWLIIPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFDVEYAAG PFALFFLAEYANIIMMNILTTILFFGAFHSPYMPELYTINFTVKTLLLTTTFLWIRAS YPRFRYDQLMHLLWKNFLPLTLALCMWHVSLPIITASIPPQT" tRNA 4571..4639 /product="tRNA-Ile" tRNA complement(4637..4710) /product="tRNA-Gln" tRNA 4712..4780 /product="tRNA-Met" CDS 4781..>5822 /gene="ND2" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098525" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 2" /translation="MNPPIFIIIMLTVISGTMIVVTTSHWLLVWIGFEMNLLAIIPIL MKKYNPRAMEAATKYFLTQAAASMILMMWIIINLLHSGQWTVLKDLNPMASIMMTTAL AMKLGLAPFHFWVPEVTQGISMSSGLILLTWQKIAPLSILYQISSTINPNLILTMSIL SVMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAIMMYSPTMMILNLTIYIIMTLTTFML FMHNSTTTTASLSQTWNKTPLITSLILVLMMSLGGLPPLSGFIPKWMIIQELTKNELI MMPTLLAMTALLNLYFYMRLTYTTALTMFPSNNSMKMKWRFECTKKMTFLPPLVVMST MLLPLAPMLSILD" tRNA 5823..5890 /product="tRNA-Trp" tRNA complement(5907..5975) /product="tRNA-Ala" tRNA complement(5977..6049) /product="tRNA-Asn" rep_origin 6050..6081 /note="origin of L-strand replication; OLR" tRNA complement(6082..6147) /product="tRNA-Cys" tRNA complement(6148..6214) /product="tRNA-Tyr" CDS 6216..7760 /gene="COI" /note="NCBI gi: 1098526" /codon_start=1 /transl_table=2 /product="cytochrome c oxidase subunit I" /translation="MFMNRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQP GTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWA MMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW SPAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGG FVHWFPLFSGYTLDNTWAKIHFTIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTTW NTISSMGSFISLTAVMLMVFMVWEAFASKREVAMVELTTTNLEWLHGCPPPYHTFEEP TYVLLK" tRNA complement(7759..7828) /product="tRNA-Ser (UCN)" tRNA 7833..7901 /product="tRNA-Asp" CDS 7902..8585 /gene="COII" /note="NCBI gi: 1098527" /codon_start=1 /transl_table=2 /product="cytochrome c oxidase subunit II" /translation="MAYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISL MLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGH QWYWSYEYTDYEDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVL HSWAVPSLGLKTDAIPGRLNQTTLMATRPGLYYGQCSEICGSNHSFMPIVLELVPLTY FEKWSASML" tRNA 8589..8656 /product="tRNA-Lys" CDS 8658..8861 /note="NCBI gi: 1098528" /codon_start=1 /transl_table=2 /product="ATPase 8" /translation="MPQLDTSTWSITIMSMIMTLFIVFQLKISKYLYPSNPEPKSMTT LKQRNPWEKKWTKIYSPLSLPQQ" CDS 8819..9499 /note="NCBI gi: 1098529" /codon_start=1 /transl_table=2 /product="ATPase 6" /translation="MNENLFASFTTPTMMGLPIVILIIMFPSILFPSPNRLINNRLVS LQQWLVQLTSKQMLAIHNHKGQTWALMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNL GMAIPLWAGTVITGFRHKTKASLAHFLPQGTPVPLIPMLVVIETISLFIQPMALAVRL TANITAGHLLMHLIGGAALALMNISTSIALITFTILILLTILEFAVALIQAYVFTLLV SLYLHDNT" CDS 9499..>10282 /gene="COIII" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098530" /codon_start=1 /transl_table=2 /product="cytochrome c oxidase subunit III" /translation="MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHYNLTLLLT LGMTTNLLTMYQWWRDIIRESTFQGHHTPIVQKGLRYGMILFIISEVFFFAGFFWAFY HSSLAPTPELGGCWPPTGIIPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML QALFITISLGVYFTLLQASEYYETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLIVC FLRQLKYHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" tRNA 10283..10351 /product="tRNA-Gly" CDS 10352..>10698 /gene="ND3" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098531" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 3" /translation="MNVMLALLTNTLLSTLLVLIAFWLPQLNIYAEKASPYECGFDPM GSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTDKLPTMLTMALLLISLLAASL AYEWTQKGLEWTE" tRNA 10699..10767 /product="tRNA-Arg" CDS 10768..11064 /gene="ND4L" /note="NCBI gi: 1098532" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4L" /translation="MSMVYINIFLAFIMSLMGLLMYRSHLMSSLLCLEGMMLSLFIMM AVAILNNHLTLASMTPIILLVFAACEAALGLSLLVMVSNTYGTDYVQNLNLLQC" CDS 11058..>12435 /gene="ND4" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098533" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4" /translation="MLKIIIPTAMLMPMTCLSKPNMIWINSTTYSLLISLISLSYLNQ LGGHSLNFSLLFFSDSLSAPLLVLTTWLLPLMLMASQSHLSKETPSRKKLYITMLTLL QLLLIMTFTATELIMFYILFEATLIPTLIIITRWGDQTERLNAGLYFLFYTLVGSLPL LVALLYIQNTTGTLNFLIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPK AHVEAPIAGSMVLAAVLLKLGGYGMMRITVLLNPATNQMAYPFMMLSLWGMVMTSSIC LRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNY ERVHSRTMILARGLQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMT IILMGTNIIITALYSLYMLIMTQRGKYTHHIKNINPSFTRENALMALHLLPLLLLSLN PKIVLGPIY" tRNA 12436..12504 /product="tRNA-His" tRNA 12505..12563 /product="tRNA-Ser (AGY)" tRNA 12564..12633 /product="tRNA-Leu (CUN)" CDS 12634..14454 /gene="ND5" /note="NCBI gi: 1098534" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 5" /translation="MNLFTPLMLTAMFILLLPIIMSNTQLYKNSLYPHYVKTTISYAF IISMIPTMMFISSGQEAIISNWHWLSIQTLKLSLSFKMDYFSTIFIPVALFVTWSIME FSMWYMHSDPYINRFFKYLLMFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWYG RADANTAALQAILYNRIGDVGFIMAMAWFLTNSNAWDFQQIFITQHENLNIPLLGLLL AATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFYPLMEQNKTMQTL TLCLGAITTLFTAICALTQNDIKKVVAFSTSSQLGLMIVTIGINQPYLAFLHICTHAF FKAMLFMCSGSIIHSLNDEQDIRKMGGLYKPMPFTTTSLIIGSLALTGMPFLTGFYSK DLIIETANTSYTNAWALLITLIATSLTAAYSTRIMFFVLLGQPRFNTLNLINENNTHL INSIKRLLIGSIFAGYLISYNIPPTTIPQMTMPYYLKLTALAVTIAGFILALELNLAA KNLKFMYPSNLFKFSNLLGYFPIVMHRLPSKMSLTMSQKSASMLLDMIWLENVLPKSI SLFQMKMSTTVSNQKGLVKLYFLSFMITLALSLILLNSHE" CDS complement(14438..14965) /gene="ND6" /note="NCBI gi: 1098535" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 6" /translation="MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGTGCGIV LNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWTSNKAVLAMFITGVLAELL TACYILKEDEVEVVFKFNGAGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVVVTGWS LLIGVLVIMEVTRGN" tRNA complement(14966..15034) /product="tRNA-Glu" CDS 15038..16177 /gene="cytB" /note="NCBI gi: 1098536" /codon_start=1 /transl_table=2 /product="cytochrome b" /translation="MTNIRKSHPLIKIINHSFIDLPAPSNISAWWNFGSLLGVCLTLQ ILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLYMHVGRGM YYGSYTFSETWNIGIMLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTEL VEWIWGGFSVDKATLTRFFGFHFILPFIISALAGVHLLFLHETGSNNPSGITSDSDKI PFHPYYTIKDILGLLVLVLTLMLLVLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLF AYAILRSIPNKLGGVLALVLSILVLAIIPILHTSKQRGMMFRPLSQCLFWLLVADLLT LTWIGGQPVEHPFITIGQLASILYFSTLLILMPISGIIENRLLKW" tRNA 16178..16247 /product="tRNA-Thr" tRNA complement(16248..16314) /product="tRNA-Pro" misc_feature join(16315..17009,1..865) /note="control region; CR" BASE COUNT 5543 a 4454 c 2406 g 4606 t ORIGIN BASE COUNT 580 a 338 c 286 g 370 t 9201 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------UAAA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAgucaccu u--------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-aaAA- -GUAU-A(-G GAGA)UAGAA -Auuuaacu- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagauaa aauua----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-CACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |GUU-AGCUA GAacaa--c- 2101 cuaacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuucagcua 2701 ggc-ccCCCG AA-ACCAG-A CG-AGCUACC CAU-GAA-CA AUCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auuaca) ---------- 2821 -GGAUGAA-C UC-GUCUAU( GUUGCAA-A) AUAG-UGAGA --AGAUUUG- UGGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGCCC--AGA AC-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuca 3121 aaaa-----c cuaaaauucc aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UAAA-AUAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AC----c --uAGG(AUA -CAG)CCU-U UAuua-g-ag -ag-UAA--- 3541 --gcauaaau auaaacc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccaa--cuc| c--u-aa|-- --------cc u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aaa aCUGG-GC|- UA-AUCUAUU U--------- 4501 ---------- ---------- (aaua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGC-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (--aua---- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-cccu-GCA UAA--gcuua u|----auca 4801 gaac----gg ---------- ----(---au aa)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caac----- ---------- ---------- ---------- -------<-- 4921 --aagauau( auauaaccua accauaaaca aa---)auau caaauua--- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAACCC- -(AACACA)G G|UAUGC--- ----(aaauu a-----)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuucca- ------)--- ---------- 6901 ------GUA- UGA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g cua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCCC(-U AAAU-)AGGG AC|UU-GUAU GAACGGCCAC A-CGAGGGCU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CC ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AUA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CCG ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----aa gagaccauau gaaccaacc( 7561 gaca---)gg aacaacaaac cucuaua--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CC -GG---c-AA UUUAGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAACAAC- )CUCC-GA|G |u|gau--|< 8221 uuaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucu-agac( -uaacca--- )gucga-aag --uacuac-- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aaa cc)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUCAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)AGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ---uaaua-- 9301 >--------- ---------- --A-CUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AG-<--- ---------- ---------- -------->U gaggccc-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---cacca-> 9541 ---------- ---------- aagc-gccuu ua-------- ---------- -------acc 9601 ---------- --aaauagau (gauaua--a ucuua)a-uc -ua-gacagu u--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cga(--gagc ---)ucgggu uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.grypu 10775 bp RNA RNA 11-JAN-191 DEFINITION Halichoerus grypu. ACCESSION No information KEYWORDS No information. SOURCE Halichoerus grypu. ORGANISM Halichoerus grypu. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X72004 LOCUS MIHGCG 16797 bp DNA MAM 08-NOV-1993 DEFINITION H.grypus mitochondrial sequence, complete genome ACCESSION X72004 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATP synthase subunit 6; ATP synthase subunit 8; complete genome; cytochrome b; cytochrome oxidase subunit I; cytochrome oxidase subunit II; cytochrome oxidase subunit III; NADH-ubiquinone oxidoreductase; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; ribosomal RNA; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE grey seal ORGANISM Mitochondrion Halichoerus grypus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. REFERENCE 2 (bases 1 to 16797) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-MAY-1993) U. Arnason, University of Lund, Dept of Genetics, Division of Molecular Genetics, The Wallenberg Laboratory, Box 7031, 220 07 Lund, SWEDEN STANDARD full automatic REFERENCE 3 (bases 1 to 16797) AUTHORS Anderson,U., Gullberg,A., Johnsson,E. and Ledje,C. TITLE The nucleotide sequence of the mitochondrial DNA molecule of the grey seal Halichoerus grypus and a comparison with mitochondrial sequences of other true seals JOURNAL J. Mol. Evol. 37, 312-322 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..16797 /organism="Halichoerus grypus" /mitochondrion tRNA 906..975 /product="tRNA-Phe" rRNA 976..1935 /product="12S rRNA" tRNA 1936..2008 /product="tRNA-Val" rRNA 2009..3577 /product="16S rRNA" tRNA 3578..3651 /product="tRNA-Leu(UUR)" tRNA 4610..4678 /product="tRNA-Ile" tRNA complement(4676..4763) /product="tRNA-Gln" tRNA 4764..4818 /product="tRNA-Met" tRNA 5861..5928 /product="tRNA-Trp" tRNA complement(5939..6007) /product="tRNA-Ala" tRNA complement(6009..6081) /product="tRNA-Asn" rep_origin 6082..6117 /note="origin of L-strand replication" tRNA complement(6114..6179) /product="tRNA-Cys" tRNA complement(6180..6247) /product="tRNA-Tyr" tRNA complement(7791..7861) /product="tRNA-Ser(UCN)" tRNA 7866..7932 /product="tRNA-Asp" tRNA 10312..10379 /product="tRNA-Gly" tRNA 10727..10795 /product="tRNA-Arg" tRNA 12464..12532 /product="tRNA-His" tRNA 12533..12591 /product="tRNA=Ser(AGY)" tRNA 12592..12652 /product="tRNA-Leu(CUN)" tRNA complement(14994..15062) /product="tRNA-Glu" tRNA complement(16277..16342) /product="tRNA-Thr" misc_feature join(16343..16797,1..905) /note="control region" tRNA 16342..16277 /product="tRNA-Pro" CDS 3654..4610 /gene="NADH1" /product="NADH-ubiquinone oxidoreductase subunit 1" /codon_start=1 /translation="MFMINIISLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYG LLQPIADAVKLFTKEPLRPLTSSTTMFIMAPILALTLALTMWVPLPMPYPLINMNLGV LFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF TLSTLIITQEHLWLIFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAG PFAMFFLAEYANIIMMNIFTTLLFFGAFHNPYMPELYVVNFTVKTLALTILFLWIRAS YPRFRYDQLMHLLWKNFLPLTLALCMWHVTLPIISASIPPQT" CDS 4819..5862 /gene="NADH2" /product="NADH-ubiquinone oxidoreductase subunit 2" /codon_start=1 /translation="MKPPILIIIMSTVMSGTMIVLTSSHWLLIWIGFEMNMLAIIPIL MKNHTPRATEASTKYFLTQATASMLLMMGIIINLMFSGEWSISKIPNPIASGLVTIAL TMKLGMAPFHFWVPEVTQGISLSSGMILLTWQKIAPLSILYQISPSINPKLLITMAIA SVLIGGWGGLNQTQLRKILAYSSIAHMGWMAVILTYNPTLMILNLTIYITMTLSTFML FMHNSSTTTLSLSNTWNKLPLMTSLILVLMMSLGGLPPLSGFAPKWMIIQELTKNDMI ILPTFMAITALLNLYFYMRLSYTTALTMFPSVNNMKMKWQFESAKKIILLPPLIIIST MLLPMTPMMSILE" CDS 6249..7793 /gene="COI" /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MFMDRWLFSTNHKDIGTLYLLFGAWAGMAGTALSLLIRAELGQP GALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWA MMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW SPAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGG FVHWFPLFSGYTLDNTWAKIHFTIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTTW NTVSSMGSFISLTAVMLMVFMIWEAFASKREVAAVELTTTNIEWLHGCPPPYHTFEEP TYVVLK" CDS 7933..8616 /gene="COII" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAYPLQMGLQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISL MLTTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGH QWYWSYEYTDYEDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVL HSWAVPSLGLKTDAIPGRLNQTTLMAMRPGLYYGQCSEICGSNHSFMPIVLELVPLSH FEKWSTSML" CDS 8688..8891 /gene="ATPase8" /product="ATP synthase subunit 8" /codon_start=1 /translation="MPQLDTSTWLIMISSMILTLFITFHLKVSKHYFPTNPEPKHTLL LKNSAPWEEKWTKIYSPLSLPLQ" CDS 8849..9529 /gene="ATPase6" /product="ATP synthase subunit 6" /codon_start=1 /translation="MNENLFASFTTPTMMGLPIVILIVLFPSILFPSPDRLINNRLTS IQQWLIQLTSKQMLSIHNHKGQTWALMLISLILFIGSTNLLGLLPHSFTPTTQLSMNL GMAIPLWAGTVITGFRHKTKASLAHFLPQGTPLPLIPMLVIIETISLFIQPMALAVRL TANITAGHLLIHLIGGATLALMDISTTTAFITFIVLILLTILEFAVALIQAYVFTLLV SLYLHDNT" CDS 9529..10311 /partial /gene="COIII" /note="no stop codon" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MTHQTHAYHMVNPSPWPLTGALSALLMTSGLIMWFHFNSMYLLM LGLTTNTLTMYQWWRDIVRESTFQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFY HSSLAPTPELGGCWPPTGITPLNPMEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML QALFITISLGVYFTLLQASEYYETPFTISDGIYGSTFFMATGFHGLHVIIGSTFLIVC FMRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10380..10724 /partial /gene="NADH3" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 3" /codon_start=1 /translation="MNMALTLFTNTALASLLVLIAFWLPQLNTYSEKVSPYECGFDPM GSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASHTDNLTTMLTMALLLISLLAASL AYEWTEKGLEWTE" CDS 10796..11092 /gene="NADH4L" /product="NADH-ubiquinone oxidoreductase subunit 4L" /codon_start=1 /translation="MSMVYANIFLAFIMSLMGLLMYRSHLMSSLLCLEGMMLSLFVMM TVTILNNHFTLASMAPIILLVFAACEAALGLSLLVMVSNTYGTDYVQNLNLLQC" CDS 11086..12462 /partial /gene="NADH4" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 4" /codon_start=1 /translation="MLKIIIPTMMLMPLTWMSKPNMIWINTTAYSLLISLISLSFLNQ LGDNCMSLSLLFFTDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLILL QLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPL LVALLFIQNNMGTLNFLMIQLWAQPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPK AHVEAPIAGSMVLAAVLLKLGGYGMMRITALLSPLTSFMAYPFMMLSLWGMTMTSSIC LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNY ERTHSRTMILARGLQVLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNIT IILMGTNIIITALYSLYMLITTQRGKYTYHIKNIKPSFTRENALMTLHLMPLLLLSLN PKVILGPIY" CDS 12653..14482 /gene="NADH5" /product="NADH-ubiquinone oxidoreductase subunit 5" /codon_start=1 /translation="MKVINLFASSIITTLSMLTLPIVLTSTSIYKNKLYPQYVKTAIS YAFMISMIPTTMFIYSGQEMIISNWHWMTIQTMKLTLSFKLDHFSMIFVPVALFVTWS IMEFSMWYMHSDPFINRFFKYLLMFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGW WHGRTDANTAALQAVLYNRIGDVGFIMAMAWFLINLNTWELQQIFISHHNNLNVPLMG LLLAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFHPLMEHNTMM QTTTLCLGAITTLFTAICALTQNDIKKIIAFSTSSQLGLMIVTIGINQPHLAFLHICT HAFFKAMLFLCSGSIIHNLNDEQDIRKMGGLYKVLPFTTTSLIVGSLALTGMPFLTGF YSKDLIIETANTSYTNAWALLLTLVATSMTAAYSTRIMFFALLDQPRFNPMITINENS PLLINPIKRLLLGSIFAGYLISYNITPTSTPQMTMPHYLKLMALTVTLLGFILALELN LTSQSLKLKHPSNLFKFSNLLGYFPTIIHRYMPMVNLSASQKLASTLLDAIWLENALP KSISYFHMKSSVTISNQKGLIKLYFLSFIITLILALMMINSHE" CDS complement(14466..14993) /gene="NADH6" /product="NADH-ubiquinone oxidoreductase subunit 6" /codon_start=1 /translation="MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIV LSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWVSNKAVLGAFVMGLLSELL LACYILKDDEVDAVFEFNGMGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWS LFIGVLVIMEVTRGN" CDS 15067..16206 /product="cytochrome b" /codon_start=1 /translation="MTNIRKTHPLMKIINNSFIDLPTPSNISAWWNFGSLLGICLILQ ILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLYMHVGRGL YYGSYTFTETWNIGIILLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL VQWIWGGFSVDKATLTGFFAFHFILPFVVLALAAVHLLFLHETGSNNPSGIMPDSDKI PFHPYYTIKDILGALLLILVLTLLVLFSPDLLGDPDNYIPANPLSTPPHIKPEWYFLF AYAILRSIPNKLGGVLALVLSILILAIVPLLHTSKQRGMMFRPISQCLFWLLVADLLT LTWIGGQPVEHPYITIGQLASILYFMILLVLMPIASIIENNILKWS" BASE COUNT 5537 a 4612 c 2398 g 4250 t ORIGIN BASE COUNT 601 a 331 c 274 g 363 t 9206 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----CAAA 841 CAA(AACA)U UUAgucauac ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ---uaacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCUAU AGAG-ACA-- ----GUACC( aGCAA-)GGG ---AAA-GA- 1681 UGaaagagaa uuc------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGA |AUU-AGCUA GAaca--ac- 2101 uuaacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuaagcua 2701 agc-ccCCCG AA-ACCAG-A CG-AGCUACC UGC-GAA-CA AUCC------ ---------- 2761 -(-------- ---------- ---------- ---------- ----ccug-) ---------- 2821 -GGAUGAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUCG- CAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UACCC--AGA Au-A-G-AAU 2941 (-UUCA)GUU CA-AC-UUUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuaa 3121 aacc-----c aagaauuuua au-------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GC-U -UAAA-AUAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AU----c --aAGG(AUA -CAA)CCU-U ACuua-g-ag -ag-UAA--- 3541 --acacaaau uagacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- acaa--cuc| c--u-aa|-- -------cgu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aca uCUGG-GU|- CA-AUCUAUU C--------- 4501 ---------- ---------- (aauu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGUUGAG ACAAUGC-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (--ccu---- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuu-GCA UAA--acuua u|----aacc 4801 gaaau---gg ---------- ----(---au au)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caac----- ---------- ---------- ---------- -------<-- 4921 -aagauaaa( acuaaccaac caauuaauua ua---)ccua ucaaacua-- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAAGCC- -(AACACA)G G|AAUGC--- ----(aacca ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uaa)------ ---------- ---------| 7141 ---GUUA-AA C-|AA-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUA(-U AAAU-)AAGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AGA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----ac agaacaaauc cagucaacc( 7561 aaca---)gg gaauaaaaau --uucuauaa ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -AG---C-AA UUUaGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAACAAC- )CUCC-GA|G |u|gau--|< 8221 auaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acua-agac( -aaacca--- )gucaa-agu --gccgc--- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--auuaAU UGAUC-CAAA A--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uu)--|--UU 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCGAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----aacca- 9301 >--------- ---------- --G-UUC-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->c aaggccc-ac cu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caacac> 9541 ---------- ---------- aggc-gccuu aa-------- ---------- -------gac 9601 ---------- --uaauagau (gauaua--a ucuua)a-uc -ua-gccagu c--------- 9661 ---------- ---------| ------(--- )--------- -------|au 9961 cc-(aagaaa ca-)-ggacc u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.vitul 10775 bp RNA RNA 11-JAN-191 DEFINITION Phoca vitulina mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Phoca vitulina mitochondria. ORGANISM Phoca vitulina mitochondria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X63726 :X63726 ID MIPVDNA standard; DNA; ORG; 16826 BP. XX AC X63726; XX DT 19-JUN-1992 (Rel. 32, Created) DT 19-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE P.vitulina mitochondrial DNA, complete genome XX KW 16S ribosomal RNA; cytochrome b; cytochrome C oxidase subunit I; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; origin of replication; ribosomal RNA; KW transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; KW transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; KW transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr; transfer RNA-Val. XX OS Phoca vitulina OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. XX OG Mitochondrion XX RN [1] RA Arnason U., Johnsson E.; RT "The complete mitochondrial DNA sequence of the Harbor seal, phoca RT vitulina"; RL J. Mol. Evol. 34:493-505(1992). XX RN [2] RP 1-16826 RA Arnason U.; RT ; RL Submitted (17-FEB-1992) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Genetics, Univ of Lund, Box 7031, S-220 07 RL Lund, SWEDEN XX FH Key Location/Qualifiers FH FT tRNA 935..1004 FT /gene="tRNA-Phe" FT rRNA 1005..1965 FT /gene="12S rRNA" FT tRNA 1966..2038 FT /gene="tRNA-Val" FT rRNA 2039..3603 FT /gene="16S rRNA" FT tRNA 3604..3677 FT /gene="tRNA-Leu" /note="anticodon UUR" FT CDS 3680..4636 FT /product="NADH dehydrogenase subunit 1" FT tRNA 4636..4704 FT /gene="tRNA-Ile" FT tRNA complement(4702..4789) FT /gene="tRNA-Gln" FT tRNA 4790..4844 FT /gene="tRNA-Met" FT CDS 4845..5888 FT /product="NADH dehydrogenase subunit 2" FT tRNA 5887..5953 FT /gene="tRNA-Trp" FT tRNA complement(5964..6032) FT /gene="tRNA-Ala" FT tRNA complement(6034..6106) FT /gene="tRNA-Asn" FT rep_origin 6107..6142 FT /note="origin L-strand replication" FT tRNA complement(6139..6205) FT /gene="tRNA-Cys" FT tRNA complement(6206..6273) FT /gene="tRNA-Tyr" FT CDS 6275..7819 FT /product="cytochrome c oxidase subunit I" FT tRNA complement(7817..7887) FT /gene="tRNA-Ser" /note="anticodon UCN" FT tRNA 7892..7958 FT /gene="tRNA-Asp" FT CDS 7959..8642 FT /product="cytochrome c oxidase subunit II" FT tRNA 8644..8712 FT /gene="tRNA-Lys" FT CDS 8714..8917 FT /product="ATPase subunit 8" FT CDS 8875..9555 FT /product="ATPase subunit 6" FT CDS 9555..10337 FT /product="cytochrome oxidase subunit III" FT /note="no stop codon" FT tRNA 10339..10406 FT /gene="tRNA-Gly" FT CDS 10407..10751 FT /product="NADH dehydrogenase subunit 3" FT tRNA 10754..10822 FT /gene="tRNA-Arg" FT CDS 10823..11119 FT /product="NADH dehydrogenase subunit 4L" FT CDS 11113..12489 FT /product="NADH dehydrogenase subunit 4L" FT tRNA 12491..12559 FT /gene="tRNA-His" FT tRNA 12560..12618 FT /gene="tRNA-Ser" /note="anticodon AGY" FT tRNA 12619..12679 FT /gene="tRNA-Leu" /note="anticodon CUN" FT CDS 12680..14509 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14493..15020) FT /product="NADH dehydrogenase subunit 6" FT tRNA complement(15021..15089) FT /gene="tRNA-Glu" FT CDS 15094..16233 FT /product="cytochrome b" FT tRNA 16234..16302 FT /gene="tRNA-Thr" FT tRNA complement(16304..16369) FT /gene="tRNA-Pro" XX SQ Sequence 16826 BP; 5550 A; 4616 C; 2403 G; 4257 T; 0 other; ID MIPVDNA standard; DNA; ORG; 16826 BP. XX AC X63726; XX DT 19-JUN-1992 (Rel. 32, Created) DT 19-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE P.vitulina mitochondrial DNA, complete genome XX KW 16S ribosomal RNA; cytochrome b; cytochrome C oxidase subunit I; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; origin of replication; ribosomal RNA; KW transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; KW transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; KW transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr; transfer RNA-Val. XX OS Phoca vitulina OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. XX OG Mitochondrion XX RN [1] RA Arnason U., Johnsson E.; RT "The complete mitochondrial DNA sequence of the Harbor seal, phoca RT vitulina"; RL J. Mol. Evol. 34:493-505(1992). XX RN [2] RP 1-16826 RA Arnason U.; RT ; RL Submitted (17-FEB-1992) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Genetics, Univ of Lund, Box 7031, S-220 07 RL Lund, SWEDEN XX FH Key Location/Qualifiers FH FT tRNA 935..1004 FT /gene="tRNA-Phe" FT rRNA 1005..1965 FT /gene="12S rRNA" FT tRNA 1966..2038 FT /gene="tRNA-Val" FT rRNA 2039..3603 FT /gene="16S rRNA" FT tRNA 3604..3677 FT /gene="tRNA-Leu" /note="anticodon UUR" FT CDS 3680..4636 FT /product="NADH dehydrogenase subunit 1" FT tRNA 4636..4704 FT /gene="tRNA-Ile" FT tRNA complement(4702..4789) FT /gene="tRNA-Gln" FT tRNA 4790..4844 FT /gene="tRNA-Met" FT CDS 4845..5888 FT /product="NADH dehydrogenase subunit 2" FT tRNA 5887..5953 FT /gene="tRNA-Trp" FT tRNA complement(5964..6032) FT /gene="tRNA-Ala" FT tRNA complement(6034..6106) FT /gene="tRNA-Asn" FT rep_origin 6107..6142 FT /note="origin L-strand replication" FT tRNA complement(6139..6205) FT /gene="tRNA-Cys" FT tRNA complement(6206..6273) FT /gene="tRNA-Tyr" FT CDS 6275..7819 FT /product="cytochrome c oxidase subunit I" FT tRNA complement(7817..7887) FT /gene="tRNA-Ser" /note="anticodon UCN" FT tRNA 7892..7958 FT /gene="tRNA-Asp" FT CDS 7959..8642 FT /product="cytochrome c oxidase subunit II" FT tRNA 8644..8712 FT /gene="tRNA-Lys" FT CDS 8714..8917 FT /product="ATPase subunit 8" FT CDS 8875..9555 FT /product="ATPase subunit 6" FT CDS 9555..10337 FT /product="cytochrome oxidase subunit III" FT /note="no stop codon" FT tRNA 10339..10406 FT /gene="tRNA-Gly" FT CDS 10407..10751 FT /product="NADH dehydrogenase subunit 3" FT tRNA 10754..10822 FT /gene="tRNA-Arg" FT CDS 10823..11119 FT /product="NADH dehydrogenase subunit 4L" FT CDS 11113..12489 FT /product="NADH dehydrogenase subunit 4L" FT tRNA 12491..12559 FT /gene="tRNA-His" FT tRNA 12560..12618 FT /gene="tRNA-Ser" /note="anticodon AGY" FT tRNA 12619..12679 FT /gene="tRNA-Leu" /note="anticodon CUN" FT CDS 12680..14509 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14493..15020) FT /product="NADH dehydrogenase subunit 6" FT tRNA complement(15021..15089) FT /gene="tRNA-Glu" FT CDS 15094..16233 FT /product="cytochrome b" FT tRNA 16234..16302 FT /gene="tRNA-Thr" FT tRNA complement(16304..16369) FT /gene="tRNA-Pro" XX SQ Sequence 16826 BP; 5550 A; 4616 C; 2403 G; 4257 T; 0 other; ID MIPVDNA standard; DNA; ORG; 16826 BP. XX AC X63726; XX DT 19-JUN-1992 (Rel. 32, Created) DT 19-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE P.vitulina mitochondrial DNA, complete genome XX KW 16S ribosomal RNA; cytochrome b; cytochrome C oxidase subunit I; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; origin of replication; ribosomal RNA; KW transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; KW transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; KW transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr; transfer RNA-Val. XX OS Phoca vitulina OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. XX OG Mitochondrion XX RN [1] RA Arnason U., Johnsson E.; RT "The complete mitochondrial DNA sequence of the Harbor seal, phoca RT vitulina"; RL J. Mol. Evol. 34:493-505(1992). XX RN [2] RP 1-16826 RA Arnason U.; RT ; RL Submitted (17-FEB-1992) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Genetics, Univ of Lund, Box 7031, S-220 07 RL Lund, SWEDEN XX FH Key Location/Qualifiers FH FT tRNA 935..1004 FT /gene="tRNA-Phe" FT rRNA 1005..1965 FT /gene="12S rRNA" FT tRNA 1966..2038 FT /gene="tRNA-Val" FT rRNA 2039..3603 FT /gene="16S rRNA" FT tRNA 3604..3677 FT /gene="tRNA-Leu" /note="anticodon UUR" FT CDS 3680..4636 FT /product="NADH dehydrogenase subunit 1" FT tRNA 4636..4704 FT /gene="tRNA-Ile" FT tRNA complement(4702..4789) FT /gene="tRNA-Gln" FT tRNA 4790..4844 FT /gene="tRNA-Met" FT CDS 4845..5888 FT /product="NADH dehydrogenase subunit 2" FT tRNA 5887..5953 FT /gene="tRNA-Trp" FT tRNA complement(5964..6032) FT /gene="tRNA-Ala" FT tRNA complement(6034..6106) FT /gene="tRNA-Asn" FT rep_origin 6107..6142 FT /note="origin L-strand replication" FT tRNA complement(6139..6205) FT /gene="tRNA-Cys" FT tRNA complement(6206..6273) FT /gene="tRNA-Tyr" FT CDS 6275..7819 FT /product="cytochrome c oxidase subunit I" FT tRNA complement(7817..7887) FT /gene="tRNA-Ser" /note="anticodon UCN" FT tRNA 7892..7958 FT /gene="tRNA-Asp" FT CDS 7959..8642 FT /product="cytochrome c oxidase subunit II" FT tRNA 8644..8712 FT /gene="tRNA-Lys" FT CDS 8714..8917 FT /product="ATPase subunit 8" FT CDS 8875..9555 FT /product="ATPase subunit 6" FT CDS 9555..10337 FT /product="cytochrome oxidase subunit III" FT /note="no stop codon" FT tRNA 10339..10406 FT /gene="tRNA-Gly" FT CDS 10407..10751 FT /product="NADH dehydrogenase subunit 3" FT tRNA 10754..10822 FT /gene="tRNA-Arg" FT CDS 10823..11119 FT /product="NADH dehydrogenase subunit 4L" FT CDS 11113..12489 FT /product="NADH dehydrogenase subunit 4L" FT tRNA 12491..12559 FT /gene="tRNA-His" FT tRNA 12560..12618 FT /gene="tRNA-Ser" /note="anticodon AGY" FT tRNA 12619..12679 FT /gene="tRNA-Leu" /note="anticodon CUN" FT CDS 12680..14509 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14493..15020) FT /product="NADH dehydrogenase subunit 6" FT tRNA complement(15021..15089) FT /gene="tRNA-Glu" FT CDS 15094..16233 FT /product="cytochrome b" FT tRNA 16234..16302 FT /gene="tRNA-Thr" FT tRNA complement(16304..16369) FT /gene="tRNA-Pro" XX SQ Sequence 16826 BP; 5550 A; 4616 C; 2403 G; 4257 T; 0 other; BASE COUNT 600 a 330 c 277 g 358 t 9210 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----CAAA 841 CAA(AACA)U UUAgucauac ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ---aac---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGAGCUAU AGAG-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagagag uuc------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGA |GUU-AGCUA GAaca--ac- 2101 uuaacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuaagcua 2701 agc-ccCCCG AA-ACCAG-A CG-AGCUACC UAC-GAA-CA AUCC------ ---------- 2761 -(-------- ---------- ---------- ---------- ----ccug-) ---------- 2821 -GGAUGAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUG- CAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UACCC--AGA Au-A-G-AAU 2941 (-UUCA)GUU CA-AC-UUUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuaa 3121 aacc-----c caagaauuuu aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GC-U -UAAA-AUAU AAUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AU----c --aAGG(AUA -CAA)CCU-U ACuua-g-ag -ag-UAA--- 3541 --acauaaau aagacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- acaa--cuc| c--u-aa|-- -------cgu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acu aCUGG-GU|- CA-AUCUAUU C--------- 4501 ---------- ---------- (aauu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA ACAAUGC-UA 4681 AU|AUGAGUA -ACAA-GAA- a--------- (--ccu---- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuu-GCA UAA--acuua u|----aacc 4801 gaaac---gg ---------- ----(---au au)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caac----- ---------- ---------- ---------- -------<-- 4921 -aagauaaa( auuaacuaac caauuaauac a----)ccua ucaaacua-- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAAGCC- -(AACACA)G G|AAUGC--- ----(agcca ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uaa)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUA(-U AAAU-)AAGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----ac agagcaaauc cagucaacc( 7561 aaca---)gg gaauaaaaac --uucuacaa ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -AG---C-AA UUUaGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAACAAC- )CUCC-GA|G |u|gau--|< 8221 auaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acua-agac( -aaacca--- )gucaa-agu --gccac--- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuaAU UGAUC-CAAA ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---U 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUUGAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----aacca- 9301 >--------- ---------- --G-UUC-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->c aaggccc-ac cu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caacac> 9541 ---------- ---------- aggc-gccuu aa-------- ---------- -------gac 9601 ---------- --uaauagau (gauaua--a ucuca)a-uc -ua-accagu c--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 cc-(aagaaa ca-)-ggacu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Cetac 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (20)-Mysti 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.B.mysti 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Balaena mysticetus.; . ACCESSION U13102 KEYWORDS . SOURCE Mitochondrion Balaena mysticetus. ORGANISM Mitochondrion Balaena mysticetus. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13102 NCBI gi: 595598 BASE COUNT 161 a 117 c 110 g 130 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aca)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAUU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaauc aua--accuc aaacc(a-cc 7561 aa)ggga-ua acaaa-auuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccua-ggc( -ccacua--- )gccaa-agc -auaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.B.muscu 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Balaenoptera musculus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Balaenoptera musculus. ORGANISM Mitochondrion Balaenoptera musculus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X72204 LOCUS MIBMCG 16402 bp DNA MAM 03-NOV-1993 DEFINITION B.musculus mitochondrial DNA complete genome ACCESSION X72204 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATP synthase subunit 6; ATP synthase subunit 8; complete genome; cytochrome b; cytochrome oxidase subunit I; cytochrome oxidase subunit II; cytochrome oxidase subunit III; NADH-ubiquinone oxidoreductase; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; ribosomal RNA; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Balaenoptera musculus ORGANISM Mitochondrion Balaenoptera musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Cetacea; Mysticeti; Balaenopteridae. REFERENCE 2 (bases 1 to 16402) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-MAY-1993) U. Arnason, University of Lund, Dept of Genetics, Division of Molecular Genetics, The Wallenberg Laboratory, Box 7031, 220 07 Lund, SWEDEN STANDARD full automatic REFERENCE 4 (bases 1 to 16402) AUTHORS Arnesson,U., Gullberg,A. and Bengt,W. TITLE Catacean mitochondrial DNA control region: sequences of all extant baleen whales two sperm whale species JOURNAL Mol. Biol. Evol. 10, 960-970 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..16402 /organism="Balaenoptera musculus" /mitochondrion tRNA 422..494 /product="tRNA-Phe" rRNA 496..1467 /product="12S rRNA" tRNA 1468..1534 /product="tRNA-Val" rRNA 1535..3109 /product="16S rRNA" tRNA 3110..3184 /product="tRNA-Leu(UUR)" tRNA 4143..4211 /product="tRNA-Ile" tRNA complement(4209..4281) /product="tRNA-Gln" tRNA 4283..4351 /product="tRNA-Met" tRNA 5394..5462 /product="tRNA-Trp" tRNA complement(5468..5536) /product="tRNA-Ala" tRNA complement(5538..5611) /product="tRNA-Asn" rep_origin 5611..5647 /note="origin of L-strand replication" tRNA complement(5644..5711) /product="tRNA-Cys" tRNA complement(5712..5777) /product="tRNA-Tyr" tRNA complement(7325..7395) /product="tRNA-Ser(UCN)" tRNA 7401..7468 /product="tRNA-Asp" tRNA 8156..8223 /product="tRNA-Lys" tRNA 9851..9919 /product="tRNA-Gly" tRNA 10267..10335 /product="tRNA-Arg" tRNA 12004..12072 /product="tRNA-His" tRNA 12073..12133 /product="tRNA=Ser(AGY)" tRNA 12135..12204 /product="tRNA-Leu(CUN)" tRNA complement(14537..14605) /product="tRNA-Glu" tRNA 15750..15821 /product="tRNA-Thr" tRNA complement(15821..15887) /product="tRNA-Pro" misc_feature 15888..421 /note="control region" CDS 3187..4143 /gene="NADH1" /product="NADH-ubiquinone oxidoreductase subunit 1" /codon_start=1 /translation="MFMINILTLILPILLAVAFLTLVERKILGYMQFRKGPNIVGPHG LLQPFADAIKLFTKEPLRPATSSTTMFIIAPVLALALALTMWSPLPMPYPLINMNLGV LFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSY TLSTLATTQEQLWLLFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAG PFALFFLAEYANIIMMNMFTAILFLGTFHNPCNPELYTTNLIIKTLLLTMSFLWIRAS YPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT" CDS 4352..5395 /gene="NADH2" /product="NADH-ubiquinone oxidoreductase subunit 2" /codon_start=1 /translation="MNPSIFIILLTTLILGTMMVITSSHWLLAWIGFEMNMMAFIPIM MKNPSPRATEASTKYLLTQATASALLMMAVIINLMYSGQWTITKLFNPTASTLMTVAL AIKLGLAPFHFWVPEVTQGIPLTTGLILLTWQKLAPLSILYQISPSINLYLMLTMSLL SILVGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNPTLTLLNLLIYITMTFTMFML FIQNSTTTTLSLSQTWNKTPIITTLTMLTLLSMGGLPPLSGFMPKWMIIQELTKNDIL IMPTFMAITALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFSPTKRAPLLPTAIVIST MLLPLTPMLSILL" CDS 5779..7329 /gene="COI" /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MFMNRWLFSTNHKDIGTLYLLFGAWAGMVGTGLSLLIRAELGQP GTLIGDDQVYNVLVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF WLLPPSFLLLMASSMIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTIINMKPPAMTQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMIWA MVSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW SPALMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGG FVHWFPLFSGYTLNTTWAKIHFLIMFVGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTW NTISSMGSFISLTAVMLMIFIIWEAFTSKREVLAVDLTYTNLEWLNGCPPPYHTFEEP AFVNPKWSS" CDS 7469..8152 /gene="COII" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIITL MLTTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEVNNPSLTVKTMGH QWYWSYEYTDYEDLSFDSYMIPTSDLKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVL HSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLFYGQCSEICGSNHSFMPIVLELVPLEF FEKWSASML" CDS 8225..8416 /gene="ATPase8" /product="ATP synthase subunit 8" /codon_start=1 /translation="MPQLDTSTWLLTILSMLLTLFVLFQLKISKHSYSPNPKLVPTKT QKQQTPWNITWTKIYLPLL" CDS 8386..9066 /gene="ATPase6" /product="ATP synthase subunit 6" /codon_start=1 /translation="MNENLFAPFMIPVMLGIPITTLIIILPSILFPAPNRLINNRTIS IQQWLTKLTSKQLMSVHSPKGQTWSLMLISLFLFIASTNLLGMLPHSFTPTTQLSMNV GMAIPLWAGTVATGFRNKTKMSLAHLLPQGTPTFLIPMLVIIETISLFIQPVALAVRL TANITAGHLLMHLIGETTLVLMSTSLFTAIITFTILALLTILEFRVALIQAYVFTLLV SLYLHDNT" CDS 9066..9851 /gene="COIII" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MTHQTHSYHMVNPSPWPLTGALSALLMTSGLIMWFHFNSMILLT LGLSTNILTMYQWWRDIIRESTFQGHHTPTVQKGLRYGMILFIVSEVLFFTGFFWAFY HSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML QALFITIALGLYFTLLQASEYYEAPFTISDGIYGSTFFVATGFHGLHVIIGSTFLIVC FLRQVKFHFTSNHHFGFERAAWYWHFVDVVWLFLYVSIYWWGS" CDS 9920..10266 /partial /gene="NADH3" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 3" /codon_start=1 /translation="MNLLLTLLTNTTLALLLVFIAFWLPQLNVYAEKTSPYECGFDPM GSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQSNNLNTMLTMALFLISLLAASL AYEWTQEGLEWAE" CDS 10336..10632 /gene="NADH4L" /product="NADH-ubiquinone oxidoreductase subunit 4L" /codon_start=1 /translation="VTLIHMNVLMAFSMSLVGLLMYRSHLMSALLCLEGMMLSLFVLA ALTILNSHFTLANMMPIILLVFAAYVAAIGLALLVMVSNTYGTDYVQSLNLLQC" CDS 10626..12003 /partial /gene="NADH4" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 4" /codon_start=1 /translation="MLKFIIPTIMLMPLTWLSKNNLIWINSTAHSLLISFSSLLLLNQ LNDNSLNYSLIFFSDPLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLIML QALLIMTFTATELILFYIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL LVALVYLQNTTGSLNFLLLQHWAKPLSASWSNIFMWLACMMAFLVKMPLYGLHLWLPK AHVEAPIAGSMVLAAVLLKLGGYGMLRITSMLNPLTEHMAYPFLMLSLWGMIMTSSIC LRQTDLKSLIAYSSVSHMALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNY ERIHSRTMILARGLQVLLPLMATWWLLASLTNLALPPTINLVGELLVVMSVFSWSNPT ILLMGANIVITALYTLYMLIMTQRGKHTHHINNIIPSFTREHALMALHIIPLLLLSLN PKIILGPLY" CDS 12205..14025 /gene="NADH5" /product="NADH-ubiquinone oxidoreductase subunit 5" /codon_start=1 /translation="MNLFTSFVLLTLLILFTPIMVSNTDPHKNNKYQSYVKNIVFCAF ITSLIPAMMYLHTNQETLISNWHWITIQTLKLTLSFKMDYFSLMFMPVALFITWSIME FSMWYMHSDPYINQFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWFG RTDANTAALQAILYNRIGDIGLLASMAWFLSNMNTWDLQQIFMLNQNPLNFPLMGLVL AAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRFYPLMENNKLIQTV TLCLGAITTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPYLAFLHICTHAF FKAMLFLCSGSIIHNLNNEQDIRKMGGLFKALPFTTTALIIGCLALTGMPFLTGFYSK DPIIEAATSSYTNAWALLLTLTATSLTAVYSTRIIFFALLGQPRFPPSTTINENNPLL INPIKRLLIGSIFAGFILSNSIPPVITPLMTMPLHLKLTALTMTTLGFIIAFEINLDT QNLKYTHPSNPFKFSTLLGYFPTIMHRLPPHLDLSMSQKLATSLLDLTWLETTLPKTT ALIQLKASTLTSNQQGLIKLYFLSFLITITLSMILFNCPE" CDS complement(14009..14536) /gene="NADH6" /product="NADH-ubiquinone oxidoreductase subunit 6" /codon_start=1 /translation="MVTYIVFVLSIIFVISFVGVSSKPSPIYGGLGLIVGGGAGCGVV LSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWVSNKVVLGAFILGLVVESL IVIYALKSGEVKIVFEFDGLGDWVIYDTGGSGVFSEEATGIAALYSYGVWLVIVTGWS LFVSVVIIMEITRGN" CDS 14610..15749 /product="cytochrome b" /codon_start=1 /translation="MTNIRKTHPLMKIINDAFIDLPTPSNISSWWNFGSLLGLCLIVQ ILTGLFLAMHYTPDTMTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLYAHMGRGL YYGSHAFRETWNIGVILLFTVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTL VEWIWGGFSVDKATLTRFFAFHFILPFIIMALAIVHLIFLHETGSNNPTGIPSDMDKI PFHPYYTIKDILGALLLILTLLMLTLFAPDLLGDPDNYTPANPLSTPAHIKPEWYFLF AYAILRSIPNKLGGVLALLLSILVLALIPMLHTSKQRSMMFRPFSQFLFWVLVADLLT LTWIGGQPVEHPYVIVGQLASILYFLLILVLMPVTSLIENKLMKWS" BASE COUNT 5374 a 4527 c 2140 g 4361 t ORIGIN BASE COUNT 577 a 342 c 273 g 383 t 9200 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAGC 301 |UCU--AGC| CCA------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----CAAA 841 UAA(AACA)U UCA------- ---------- ---------- ---------- ----ccaacc 901 ---------- ---------- |uuc-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuua---- 961 -------<-a acaucag--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- U-GGCGCUAU AGAA-AUA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaagaaaa accca----- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |CUU-AACUA GUaaua-ac- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- ---------- ---------- ---------- -cuuaaguua 2701 aac-uaCCCG AA-ACCAG-A CG-AGCUACU UAU-GAG-CA GUAC------ ---------- 2761 -(-------- ---------- ---------- ---------- -----cua-) ---------- 2821 -GGACGAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUA- UAAGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AUG AA-AAG-AAU 2941 (-CUCA)GUU CA-AC-AUUA AAUG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< -auacuaaaa 3121 gcc------- augccaagcc uugacgu--- ---------- ---------- ---------- 3181 ----a----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -----cAU-U -UAAC-UGUU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AU----a ---UGG(GUA -CAA)CCU-U CACUA-G-AG -AG-UAA--- 3541 --aaccaaac auacacc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCG-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- uCAA--CUC| C--U-AG|-- -------cau g--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------auu aUUGG-AC|- UA-AUCUAUa u--------- 4501 ---------- ---------- (aaac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGCA ACACUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (auuu----- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccua-GCA CGA--gcuua u|----auua 4801 guaac---ug ---------- ----(---au aa)u-a|-ua cuaaua---- ---------- 4861 ---auuaa-- -cagc----- ---------- ---------- ---------- -------<-a 4921 aauaaa--ua aaaucuaaca cuagacua-- --uuuauuaa gac------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(auu-a ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaacca- ------)--- ---------- 6901 ------AUA- UUA-GA-GCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAUU-)AAGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaauc aca--accuu aaacc(a-cc 7561 aa)ggga-ua acaaa-auuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAAAUC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -ucacua--- )gccaa-agu -guaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc uc)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CACUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- --a-UUU-CU CC--(UAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-- aaggcca-ac uu-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----caaac> 9541 ---------- ---------- aagc-gccuu caaauaa--- ---------- ---------- 9601 ---------- -----uuaau (gaccua-gu cucaa)c-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(aagacc a--)-gggcc cu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.B.phy.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Balaenoptera physalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Balaenoptera physalus. ORGANISM Mitochondrion Balaenoptera physalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X61145 ID MIBPCG standard; DNA; ORG; 16398 BP. XX AC X61145; XX DT 25-SEP-1991 (Rel. 29, Last updated, Version 2) DT 25-SEP-1991 (Rel. 29, Created) XX DE B.physalus mitochondrial DNA, complete genome XX KW 12S ribosomal RNA; 16S ribosomal RNA; ATPase subunit 6; KW ATPase subunit 8; complete genome; cytochrome b; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW cytochrome coxidase; cytochromecoxidase subunit I; KW mitochondrial DNA; NADH dehydrogenase; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; ribosomal RNA; transfer RNA; KW transfer RNA-ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-ASP; transfer RNA-Gln; transfer RNA-Glu; KW transfer RNA-gly; transfer RNA-His; transfer RNA-Ile; KW transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; KW transfer RNA-phe; transfer RNA-Pro; transfer RNA-Ser; KW transfer RNA-Thr; transfer RNA-Tyr; transfer RNA-Val; KW transfer-RNA-Trp. XX OS Balaenoptera physalus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Cetacea; Mysticeti; Balaenopteridae. XX OG Mitochondrion XX RN [1] RP 1-16398 RA Arnason U.; RT ; RL Submitted (09-AUG-1991) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Gen, The Wallenberg Lab, P.O. Box 7031, RL S-220 07 Lund, SWEDEN XX RN [2] RP 1-16398 RA Arnason U., Gullberg A., Widegren B.; RT "The complete nucleotide sequence of the mitochondrial DNA RT molecule of the fin whale, balaenoptera physalus"; RL Unpublished. XX CC *source: stage=adult female; CC *source: tissue=liver; CC *source: isolate=no 27, anno 1987; XX FH Key Location/Qualifiers FH FT tRNA 422..494 FT /product="tRNA-Phe" FT rRNA 496..1471 FT /product="12S rRNA" FT tRNA 1472..1538 FT /product="tRNA-Val" FT rRNA 1539..3112 FT /product="16S rRNA" FT tRNA 3113..3187 FT /product="tRNA-Leu" FT tRNA 4146..4214 FT /product="tRNA-Ile" FT tRNA complement(4212..4284) FT /product="tRNA-Gln" FT tRNA 4286..4354 FT /product="tRNA-Met" FT tRNA 5397..5465 FT /product="tRNA-Trp" FT tRNA 5539..5471 FT /product="tRNA-Ala" FT tRNA complement(5541..5614) FT /product="tRNA-Asn" FT rep_origin 5614..5650 FT /direction=LEFT FT tRNA complement(5647..5714) FT /product="tRNA-Cys" FT tRNA 5780..5715 FT /product="tRNA-Tyr" FT tRNA complement(7328..7398) FT /product="tRNA-Ser" FT tRNA 7404..7471 FT /product="tRNA-Asp" FT tRNA 8159..8226 FT /product="tRNA-Lys" FT CDS 8228..8419 FT /product="ATPase subunit 8" FT CDS 8389..9069 FT /product="ATPase subunit 6" FT tRNA 9854..9922 FT /product="tRNA-Gly" FT tRNA 10270..10338 FT /product="tRNA-Arg" FT tRNA 12007..12075 FT /product="tRNA-His" FT tRNA 12076..12136 FT /product="tRNA-Ser" FT tRNA 12138..12207 FT /product="tRNA-Leu" FT tRNA complement(14540..14608) FT /product="tRNA-Glu" FT CDS 14613..15752 FT /product="cytochrome b" FT tRNA 15753..15824 FT /product="tRNA-Thr" FT tRNA complement(15824..15890) FT /product="tRNA-Pro" FT D-loop join(15891..16398,1..421) FT CDS 3190..4146 FT /product="NADH dehydrogenase subunit 1" FT CDS 4355..5398 FT /product="NADH dehydrogenase subunit 2" FT CDS 9923..10267 FT /product="NADH dehydrogenase subunit 3" FT CDS 10339..10635 FT /product="NADH dehydrogenase subunit 4L" FT CDS 10629..12005 FT /product="NADH dehydrogenase subunit 4" FT CDS 12208..14028 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14012..14539) FT /product="NADH dehydrogenase subunit 6" FT CDS 5782..7332 FT /product="cytochrome c oxidase subunit I" FT CDS 7472..8155 FT /product="cytochrome c oxidase subunit II" FT CDS 9069..9854 FT /product="cytochrome c oxidase subunit III" XX SQ Sequence 16398 BP; 5359 A; 4474 C; 2182 G; 4383 T; 0 other; BASE COUNT 583 a 341 c 267 g 383 t 9201 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAGC 301 |CCU--AGC| CCA------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----CAAA 841 UAA(AACA)U UUA------- ---------- ---------- ---------- ----ccaucc 901 ---------- ---------- |cuu-caAA- -GUAU-A(-G GAGA)UAGAA -Auuua---- 961 -------<-a auaucag--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AUA-- ----GUACC( -GUAA-)GG- ---AAA-GA- 1681 UGaaagaaaa accua----- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuacca 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |CUU-AACUA GUaaua-aa- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- ---------- ---------- ---------- -cuuaaguua 2701 aau-uaCCCG AA-ACCAG-A CG-AGCUACU UAU-GAG-CA GCAC------ ---------- 2761 -(-------- ---------- ---------- ---------- -----cua-) ---------- 2821 -GAACGAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUA- UAAGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--CUG AA-AAG-AAU 2941 (-CUCA)GUU CA-AC-AUUA AAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< -auacuaaaa 3121 gccc------ augccaagcc uuaacgu--- ---------- ---------- ---------- 3181 ----au---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AAUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AA----a ---UGG(GUA -CAA)CCU-U GACUA-G-AG -AG-UAA--- 3541 --aaucaaac auaaac---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCG-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- uCAA--CUC| C--U-AG|-- -------ccu g--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------acu aUUGG-AC|- UA-AUCUAUa c--------- 4501 ---------- ---------- (aaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGCA AUACUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (auuu----- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccua-GCA CAA--gcuua c|----acca 4801 guaac---ug ---------- ----(---au aa)u-a|-ua cugaua---- ---------- 4861 ---auuaa-- -cagc----- ---------- ---------- ---------- -------<-a 4921 aauaaa--ua aaacccaaca cuaaauua-- --uuuauuaa aau------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|CGUGC--- ----(auu-a ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaacca- ------)--- ---------- 6901 ------GUA- UUA-GA-GCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAUU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC UC-CG(U-GA AGAGG)CGGA GAU----AAC AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaacc aua--accuu aaacc(a-cc 7561 aa)ggga-ua acaaa-accu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -ccacua--- )gccaa-agu -acaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc cu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)UGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- --a-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-- aaggcca-ac uu-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----caaac> 9541 ---------- ---------- aagc-gccuu caaacaa--- ---------- ---------- 9601 ---------- -----uuaau (gaccua-gu cucaa)c-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(aagacc a--)-gggcc uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.B.phy.2 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Balaenoptera physalus.; . ACCESSION U13103 KEYWORDS . SOURCE Mitochondrion Balaenoptera physalus. ORGANISM Mitochondrion Balaenoptera physalus. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13103 NCBI gi: 595599 BASE COUNT 161 a 117 c 108 g 132 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacca- ------)--- ---------- 6901 ------GUA- UUA-GA-GCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAUU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC UC-CG(U-GA AGAGG)CGGA GAU----AAC AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaacc aua--accuu aaacc(a-cc 7561 aa)ggga-ua acaaa-accu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -ccacua--- )gccaa-agu -acaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc cu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)UGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.novae 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Megaptera novaeangliae.; . ACCESSION U13117 KEYWORDS . SOURCE Mitochondrion Megaptera novaeangliae. ORGANISM Mitochondrion Megaptera novaeangliae. REFERENCE 1 (bases 1 to 520) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 520) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13117 NCBI gi: 595613 BASE COUNT 159 a 114 c 111 g 136 t 10255 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua guc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAUU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC UC-CG(U-GA AGAGG)CGGA GAU----AAC AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-ggc( -ccacua--- )gccaa-agu -guaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---uuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.robus 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Eschrichtius robustus.; . ACCESSION U13108 KEYWORDS . SOURCE Mitochondrion Eschrichtius robustus. ORGANISM Mitochondrion Eschrichtius robustus. REFERENCE 1 (bases 1 to 521) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 521) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13108 NCBI gi: 595604 BASE COUNT 164 a 116 c 110 g 131 t 10254 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacca- ------)--- ---------- 6901 ------GUA- UUA-AAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua aua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAUU-)AGGG AC|UU-GCAU GAAUGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC AAAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uuaaa----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-ggc( -ucacua--- )gccga-agu -auaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (20)-Odont 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.eutro 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Cephalorhynchus eutropia.; . ACCESSION U13105 KEYWORDS . SOURCE Mitochondrion Cephalorhynchus eutropia. ORGANISM Mitochondrion Cephalorhynchus eutropia. REFERENCE 1 (bases 1 to 514) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 514) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13105 NCBI gi: 595601 BASE COUNT 164 a 106 c 110 g 133 t 10262 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~a- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aun)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU CUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc aua--aaaua auacc(a-cc 7561 aa)ggga-ua acaaa-gcuu uaca------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -cuacca--- )gccaa-agu -auagu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.delph 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Delphinus delphis.; . ACCESSION U13106 KEYWORDS . SOURCE Mitochondrion Delphinus delphis. ORGANISM Mitochondrion Delphinus delphis. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13106 NCBI gi: 595602 BASE COUNT 167 a 107 c 110 g 134 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU CUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc aua--aaaca auacc(a-cc 7561 aa)ggga-ua acaaa-gcuu uaaa------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -cuacua--- )gccaa-agu -auagu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.melas 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Globicephala melas.; . ACCESSION U13109 KEYWORDS . SOURCE Mitochondrion Globicephala melas. ORGANISM Mitochondrion Globicephala melas. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13109 NCBI gi: 595605 BASE COUNT 167 a 111 c 110 g 130 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU CCUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc aua--aaaca auacc(a-cc 7561 aa)ggga-ua acaaa-gcuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -cuacua--- )gccaa-agu -acagu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cauAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.albir 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Lagenorhynchus albirostris.; . ACCESSION U13113 KEYWORDS . SOURCE Mitochondrion Lagenorhynchus albirostris. ORGANISM Mitochondrion Lagenorhynchus albirostris. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13113 NCBI gi: 595609 BASE COUNT 166 a 112 c 108 g 129 t 10260 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~ancca- ------)--- ---------- 6901 ------GNN- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU CUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc aua--aaaua auacc(a-cc 7561 aa)ggga-ua acaaa-acuu uaca------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -ccacca--- )gccaa-agu -auaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.obscu 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Lagenorhynchus obscurus.; . ACCESSION U13114 KEYWORDS . SOURCE Mitochondrion Lagenorhynchus obscurus. ORGANISM Mitochondrion Lagenorhynchus obscurus. REFERENCE 1 (bases 1 to 505) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 505) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13114 NCBI gi: 595610 BASE COUNT 160 a 106 c 108 g 131 t 10270 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~GGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU CUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc aua--aaaua auacc(a-cc 7561 aa)ggga-ua acaaa-gcuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -cuacca--- )gccaa-agu -auagu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.peron 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Lissodelphis peronii.; . ACCESSION U13115 KEYWORDS . SOURCE Mitochondrion Lissodelphis peronii. ORGANISM Mitochondrion Lissodelphis peronii. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13115 NCBI gi: 595611 BASE COUNT 166 a 106 c 111 g 135 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU CUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc aua--aaaua auacc(a-cc 7561 aa)ggga-ua acaaa-gcuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAAUC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -cuacca--- )gccaa-ggu -guagu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa cu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.trunc 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Tursiops truncatus.; . ACCESSION U13123 KEYWORDS . SOURCE Mitochondrion Tursiops truncatus. ORGANISM Mitochondrion Tursiops truncatus. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13123 NCBI gi: 595619 BASE COUNT 165 a 107 c 112 g 134 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU CUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU GCAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc aua--aaaua auacc(a-cc 7561 aa)ggga-ua acaaa-gcuu uaga------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-ggc( -cuacca--- )gccaa-agu -auagu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.leuca 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Delphinapterus leucas.; . ACCESSION U13107 KEYWORDS . SOURCE Mitochondrion Delphinapterus leucas. ORGANISM Mitochondrion Delphinapterus leucas. REFERENCE 1 (bases 1 to 519) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 519) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13107 NCBI gi: 595603 BASE COUNT 163 a 111 c 111 g 134 t 10256 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------uua auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG GC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaaac aca--aaaca gcacc(a-cc 7561 aa)ggga-ua acaaa-auuu uaca------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-g-c( -cuacug--- )gccaa-agu -guaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uc)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--UA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.phoco 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Phocoena phocoena.; . ACCESSION U13121 KEYWORDS . SOURCE Mitochondrion Phocoena phocoena. ORGANISM Mitochondrion Phocoena phocoena. REFERENCE 1 (bases 1 to 522) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 522) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13121 NCBI gi: 595617 BASE COUNT 161 a 106 c 115 g 139 t 10254 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~agcca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------uua auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaaaa ucguaaaaca guacc(a-cu 7561 aa)ggga-ua acaaa-auuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-ggc( -cuacua--- )gccaa-agu -guagc---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCGU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAU GG-UG(--CA -GC)NGCUAU CAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.spini 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Phocoena spinipinnis.; . ACCESSION U13122 KEYWORDS . SOURCE Mitochondrion Phocoena spinipinnis. ORGANISM Mitochondrion Phocoena spinipinnis. REFERENCE 1 (bases 1 to 519) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 519) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13122 NCBI gi: 595618 BASE COUNT 165 a 106 c 111 g 137 t 10256 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~agcca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------uua auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaauc aga--aaaca auacc(a-cu 7561 aa)ggga-ua acaga-a-uu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-ggc( -cuacua--- )gccaa-agu -guaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.K.brevi 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Kogia breviceps.; . ACCESSION U13111 KEYWORDS . SOURCE Mitochondrion Kogia breviceps. ORGANISM Mitochondrion Kogia breviceps. REFERENCE 1 (bases 1 to 519) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 519) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13111 NCBI gi: 595607 BASE COUNT 163 a 119 c 110 g 126 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GC AGAGG)CGGG GAU----AAC AAAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaagc cac--aaucu aaacc(a-cc 7561 aa)ggga-ua aaaaa-rcuu caua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -GA---C-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------UA UAAAAACCC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccua-ggc( -cuacua--- )gccaa-agc -auaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.K.simus 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Kogia simus.; . ACCESSION U13112 KEYWORDS . SOURCE Mitochondrion Kogia simus. ORGANISM Mitochondrion Kogia simus. REFERENCE 1 (bases 1 to 518) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 518) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13112 NCBI gi: 595608 BASE COUNT 162 a 117 c 112 g 127 t 10257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ca auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC GAAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AC--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaa-c cac--aaucu aaacc(a-cc 7561 aa)ggga-ua aaaaa-gcuu uaca------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GG---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAACC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccua-ggc( -cuacca--- )gccaa-agc -acacu---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.catod 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Physeter catodon.; . ACCESSION U13119 KEYWORDS . SOURCE Mitochondrion Physeter catodon. ORGANISM Mitochondrion Physeter catodon. REFERENCE 1 (bases 1 to 520) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 520) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13119 NCBI gi: 595615 BASE COUNT 165 a 122 c 109 g 124 t 10255 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ug aua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAACGGCCAC A-CGAAGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAC AAAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-auaacc caca-accuc aaacc(a-cc 7561 aa)ggga-ua aaaaa-aacu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAACCC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccua-ggc( -cuacca--- )gccaa-agc -auaac---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ag cu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.I.geoff 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Inia geoffrensis.; . ACCESSION U13110 KEYWORDS . SOURCE Mitochondrion Inia geoffrensis. ORGANISM Mitochondrion Inia geoffrensis. REFERENCE 1 (bases 1 to 519) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 519) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13110 NCBI gi: 595606 BASE COUNT 158 a 119 c 111 g 131 t 10256 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua auc)------ ---------- ---------| 7141 ---AUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUC 7261 CC-------- ---------- -------ACU GUCUCUUACU UUCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG AAU----ACU AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|-AC--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuaacu ac---aaaac aaacc(a-cc 7561 au)ggga-ua acaaa-acuu uacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---U-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAGAAAAAC- )CUCC-GA|G |u|gau--|< 8221 uauaa----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccua-ggc( -cuacua--- )gccaa-agc -gugac---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------gu uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.europ 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Mesoplodon europaeus.; . ACCESSION U13116 KEYWORDS . SOURCE Mitochondrion Mesoplodon europaeus. ORGANISM Mitochondrion Mesoplodon europaeus. REFERENCE 1 (bases 1 to 519) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 519) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13116 NCBI gi: 595612 BASE COUNT 166 a 104 c 108 g 141 t 10256 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aauca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AC--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaaau aua--aauuu aaacc(a-cc 7561 aa)ggaa-ua acaaa-acuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---C-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAAAAC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-ggc( -cuacca--- )gccaa-agu -guuaa---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uuu uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--UA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.peruv 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Mesoplodon peruvianus.; . ACCESSION U13118 KEYWORDS . SOURCE Mitochondrion Mesoplodon peruvianus. ORGANISM Mitochondrion Mesoplodon peruvianus. REFERENCE 1 (bases 1 to 520) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 520) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13118 NCBI gi: 595614 BASE COUNT 167 a 103 c 105 g 145 t 10255 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~agcca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CC ----GUGAAA 7321 UU|G|ACUUC CC-UG(U-GA AAAGG)CAGG AAU----AAU AAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaauu aua--aaucu uaacc(a-cc 7561 aa)ggaa-ua acaaa-auuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---U-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAAAAC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-ggc( -cuacca--- )gccaa-agu -auuau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------aauu uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--UA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Z.cavir 10775 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Ziphius cavirostris.; . ACCESSION U13124 KEYWORDS . SOURCE Mitochondrion Ziphius cavirostris. ORGANISM Mitochondrion Ziphius cavirostris. REFERENCE 1 (bases 1 to 519) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 519) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U13124 NCBI gi: 595620 BASE COUNT 162 a 110 c 114 g 133 t 10256 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~~------ ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~-----)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~aacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)AAGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AUU GAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|-AU--CA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaaacu aua--aaucu aaacc(g-cc 7561 aa)ggga-ua acaga-acuu uaua------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -GA---C-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAAAAAAAC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accca-ggc( -ccaccg--- )gccaa-agu -guaau---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---cuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aaa uu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUU~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Chiro 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.N.robin 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Nyctimene robinsoni.; . ACCESSION AF069536 KEYWORDS . SOURCE Mitochondrion Nyctimene robinsoni. ORGANISM Mitochondrion Nyctimene robinsoni. REFERENCE 1 (bases 1 to 1569) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1569) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069536 BASE COUNT 586 a 340 c 277 g 366 t 9206 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAU 301 |ACU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAcccuaa- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-aaaA- -GUAU-A(-G GAGA)UAGAG -Auuc----- 961 -------<-- ---uaau--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCCAU AGAG-AGA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaagacac auua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAauaa--u- 2101 uugacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuaagcca 2701 aac-aaCCCG AA-ACCAG-A CG-AGCUACU UAA-GAG-Ca gcu------- ---------- 2761 -(-------- ---------- ---------- ---------- -----aaaa) ---------- 2821 -GAGCAAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUU- UAAGUAG-CG 2881 GU(G-AAAA) GCC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AC-C-G-AAU 2941 (-UUUA)GUU CC-AU-AUUA AGU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -caugccuaa 3121 aaaa-----u uuauaauuua aau------- -gcag----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAA-AUCU AAUCU--AA- AA-GG(-GUA 3481 CAG)CCUUUU AG-aa----- -aCAGG(AUA -CAA)CCU-U AAcua-g-ag -ag-UAA--- 3541 --guaccaca caaaucc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(UUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cgaa--ccc| c--u-ag|-- -------ugu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------gac aCUGG-AC|- CA-UUCUAUu u--------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG ACACUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (uuaac---- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-cccu-GCA CGA--acuua u|----auca 4801 gaua-a-cgg ---------- ----(--aug ac)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -cag------ ---------- ---------- ---------- -------<-- 4921 --caagaua( cguccuacac uacaacuaga acaac)uauc uaaccaa--- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-uaauCC- -(GACACA)G G|UGUGC--- ----(acc-a a-----)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaacaa- ------)--- ---------- 6901 ------CUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ucu)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AUA UAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -cagacaaca aaccccacu( 7561 -ucuaa-)gg aaaacaaaac aauacccuga ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -AG---C-AA UUUAGGUUG( 8161 GGG)UG-AC- C|UCGGAA(- --------UA CAAAAAAAC- )UUCC-AA|G |u|ga---|< 8221 uuaaa----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucu-agac( -uaacaa--- )gucaa-aau --uaaccac- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--aaacAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uuu gu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUUGAG 9061 AG(U--CCAU )AUCGAUAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GA)AGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----ucac-- 9301 >--------- ---------- --G-UCC-CU CC--(CAGU- AC(-GAAA)G GAUA-)AGAG 9361 G--AA-<--- ---------- ---------- -------->C aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --aacaua-> 9541 ---------- ---------- -agc-gcccu caaa------ ---------- -------uc- 9601 ---------- ---aauagau (gacaca--a ucuua)a-uc -uagu----- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ca 9961 ccc(aagaac a--)ggguua ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.hypom 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Pteropus hypomelanus.; . ACCESSION AF069537 KEYWORDS . SOURCE Mitochondrion Pteropus hypomelanus. ORGANISM Mitochondrion Pteropus hypomelanus. REFERENCE 1 (bases 1 to 1570) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1570) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069537 BASE COUNT 582 a 343 c 294 g 351 t 9205 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------AAAU 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAcccug-- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-ac-uaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uaauc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAC-GG- 1681 UGaaagacaa auua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuaccc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAguaa--c- 2101 ucgacgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuaaagccg 2701 aau-agCCCG AA-ACCAG-A CG-AGCUACC UAA-GAG-Ca gc-------- ---------- 2761 -(-------- ---------- ---------- ---------- -----aaaa) ---------- 2821 -GAGCCAA-C UC-GUCUAU( GUAGCAA-A) AUAG-UGAGA --AGACUUU- UAGGUAG-UG 2881 GU(G-AAAA) GCC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AU-A-G-AAU 2941 (-UUUA)GUU CG-AC-UUUA AGU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -caugccuaa 3121 aaaa-----a ccacaauuca aau------- -gcag----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAA-AUGU AAUCU--AA- GA-GG(-GUA 3481 CAG)CCUCUU AG-aa----- -gcAGG(AUA -CAA)CCU-U GAcua-g-ag -ag-UAA--- 3541 --gcaccaca aaaauuc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- GA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cgaa--ccc| c--u-ag|-- -------ccc gac------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------c aCUGG-AC|- CA-CUCUAUc a--------- 4501 ---------- ---------- (uaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAGGAA AUACUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (cuagu---- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-cccu-GCA CAA--gcuua u|----auca 4801 gaac----gg ---------- ----(--aug ac)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- ---------------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---ug--|-- 6481 -u-uaacCC- -(AACACA)G G|AGUGC--- ----(acuua a-----)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auagcaa- ------)--- ---------- 6901 ------CUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ucu)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCCU CC-CG(U-GA AGAGG)CGGG AAU----AUA CAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-UUA GCC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------a uaaauaaaua acuuacacu( 7561 -ucuaa-)gg aaaacaagaa accuuuuga- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-CU -AA---C-AA UUUAGGUUG( 8161 GGG)UG-AC- C|UCGGAA(- --------UA CAAAACAAC- )UUCC-GA|G |a|ga---|< 8221 caaaa----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuu-agac( -caacaa--- )gucaa-cgg --auuca--- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------g-u 8881 c|--auuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUGAG 9061 AG(U--CCAU )AUCGAUAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----uugu-- 9301 >--------- ---------- --G-CUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--GA-<--- ---------- ---------- -------->C agggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --aacaca-> 9541 ---------- ---------- -agc-gcccu uaaa------ ---------- -------gc- 9601 ---------- --caacagau (gacaca--a ucuca)a-uc -ug------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 ccc(gaaaac a--)ggguua ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.lyra 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Megaderma lyra.; . ACCESSION AF069538 KEYWORDS . SOURCE Mitochondrion Megaderma lyra. ORGANISM Mitochondrion Megaderma lyra. REFERENCE 1 (bases 1 to 2597) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2597) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069538 BASE COUNT 541 a 347 c 311 g 361 t 9215 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAGA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UCAcaacga- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--a-caaA- -GUAU-A(-G GAGA)UAGAA -Augu----- 961 -------<-- ---uaau--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagauga gcaa------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuuaccc 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAcca--cg- 2101 cuggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agag>---- --(------) ---------- ---------- -cuuuaguca 2701 gcc-aaCCCG AA-ACCAG-A CG-AGCUACC CAC-AGA-Ca gcu------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaca) ---------- 2821 -GAGCAAA-C UC-GUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAGCUA- UGGGUAG-AG 2881 GU(G-AAAA) GCC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGG AA-AGG-AAU 2941 (-CUUA)GUU CA-AC-CUUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -cuugcccaa 3121 aacu-----c uaauaauucu aau------- -gcag----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UAAG-AUAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CCUUUU AG-ac----- -ccAGG(AUA -CAA)CCU-U AAuua-g-ag -ag-UAA--- 3541 --acauaaau aacccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AuAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- GA)-|GAAAG C(--GUUAAA )GC|-UCG-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ugaa--cuc| c--u-aa|-- -------uau ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------uaa aCUGG-AC|- UG-UUCUAUu a--------- 4501 ---------- ---------- (aaua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (auau----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-cccg-GCA CAA--gucua u|----auca 4801 gaac----gg ---------- ----(--aua gc)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -cag------ ---------- ---------- ---------- -------<-- 4921 --caagaca( aaugcagccc acccauaaau cugcc)uguc aaauaua--- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-ugauCC- -(GACACA)G G|AGUGC--- ----(ccca- ------)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-cuagcca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------au cug)------ ---------- ---------| 7141 ---UUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AGGG AC|UC-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUA ACU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- auagagcaca uuucaaccc( 7561 -aaaa--)gg auuaacaagc ccuuag---- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-AU -AG---U-AA UUUAGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAAAAAC- )CUCC-GA|G |u|ga---|< 8221 uuaag----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccc-agac( -ucacua--- )gucua-agc --cauagu-- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUCUAG 9061 AG(U--UCAU )AUCGACAAC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GC)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----ucaa-- 9301 >--------- ---------- --G-UUU-UC CC--(CAGU- AC(-GAAA)G GACA-)AGGA 9361 A--AA-<--- ---------- ---------- -------->C aaggcca-cc cu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uac-ag-> 9541 ---------- ---------- aggc-gccuu -cg------- ---------- -------ugc 9601 ---------- --uaacagau (gacuuu--a ucuca)a-cc -ug------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ug 9961 ccc(aagagc a--)gggcuc ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Edent 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.B.trida 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Bradypus tridactylus.; . ACCESSION AF069535 KEYWORDS . SOURCE Mitochondrion Bradypus tridactylus. ORGANISM Mitochondrion Bradypus tridactylus. REFERENCE 1 (bases 1 to 1580) AUTHORS ., Cleven,G.C., Kao,D. and Springer,M.S. Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B TITLE for a new order of endemic African insectivore mammals Molecular evidence for multiple origins of Insectivora and JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1580) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069535 BASE COUNT 574 a 427 c 262 g 317 t 9195 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAGA 301 |CCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----CAAC 841 CAA(ACCA)U UUAcacca-- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-aaaA- -GUAU-A(-U GCGA)UAGAA -Auua----- 961 -------<-- ---uuaac-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCCAU AGAG-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagaaca acua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aca-g c-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaacc 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |ACU-AACCA GAaaaa-cc- 2101 uugacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agcc>---- --(------) ---------- ---------- -cuucagcca 2701 aaa-acCCCG AA-UCCAG-A CG-AGCUACC CGC-GGA-Ca gca------- ---------- 2761 -(-------- ---------- ---------- ---------- -----caaa) ---------- 2821 -GAGCCAA-U UC-AUCUAU( GUUGCAA-A) AUAG-UGAAA --AGAUCCU- CAGGUAG-AG 2881 GU(G-AAAA) GCCUAACC-G A-GCCUGGCG AUAGCU-GGU UGUCC--AGG AA-CUG-AAC 2941 (-CUAA)GUU CA-AC--UUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuugccca 3121 aaga-----a cauaacauca aaucucaaca -caaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA--UAU AAUCA--AC- AG-AG(-GUA 3481 CAG)CUCUGC UG-AU----- -a-AGG(GAC -AAA)CCC-c accua-g-ag -ag-UAA--- 3541 --ccaccccc ccccccc-c- c--------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GAC(CUAAAA 3781 GC-A)-GCCA -CCAA|C(A- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccaa--cuc| c--u-aa|-- -------aac c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- --------cc aCUGG-AC|- CA-AUCUAUa a--------- 4501 ---------- ---------- (u------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG ACAAUGU-UA 4681 GU|AUAAGUA -AUAA-GAA- ---------- (uaac----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccac-GCA CUA--gcuua u|----auca 4801 gaac----gg ---------- ----(--acc ua)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -cag------ ---------- ---------- ---------- -------<-- 4921 -ccagacuu( ccacacuccc ccaaauaucc cc---)aagu cguaacuca- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-uaacCC- -(AACACA)G G|AAUGC--- ----(guac- ------)--- ----UGGAA| 6541 |---AGAU-U A--AAAGAAG -CAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c auAAAUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaacaa- ------)--- ---------- 6901 ------CUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uac)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AC -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAUU-)AAGG AC|UU-GCAU GAAAGGCCCA A-CGAGGAUU 7261 UU-------- ---------- -------ACU GUCUCCUACU UCCA-AU-CA ----AUGAAA 7321 UU|G|ACCCC CC-CG(U-GA AGAGG)CAGG GAU----AAC CAUAUAAGAC GAGAAG-ACC 7381 CUACGG-|-A ACUUU--AAU UA|--A-CUA GCC--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -ucauaaccc auacaaacc( 7561 --uagc-)gg ggacaacuuu ccaugacc-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAG-A-CU -AG---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAAAAC- )CUCC-GA|A |u|ga---|< 8221 ccaugc---- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accc-agac( cucacca--- )gucaa-cgu --gccucaau ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|aacucaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------gu aa)--|---- 9001 UUGAUCAAC- |GGA-ACAAG CUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUCAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAGU AG-UG(--UA -AC)CGCCAC UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----aacc-- 9301 >--------- ---------- --U-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->C ugggccu-ac uc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uacaaa-> 9541 ---------- ---------- -agc-gcccu aaa------- ---------- -------acc 9601 ---------- --uaauagau (gaccaa--a ucuaa)a-uc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 ccc(aaaacc a--)ggguuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.villo 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Chaetophractus villosus.; . ACCESSION AF069534 KEYWORDS . SOURCE Mitochondrion Chaetophractus villosus. ORGANISM Mitochondrion Chaetophractus villosus. REFERENCE 1 (bases 1 to 1584) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1584) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069534 BASE COUNT 585 a 365 c 265 g 368 t 9192 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 UAA(AACA)U UUAuauaucg ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uc-uaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uuacuca c--------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAA-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagacca auuc------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaca 2041 --)------- -----CUU-A UACCUU(UU- GCAUA)AUGA |GUU-AACUA GAaccu-cc- 2101 uuggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agca>---- --(------) ---------- ---------- -cuucaguca 2701 agc-acCCCG AA-ACCAG-A CG-AGCUACU UAU-GGA-Ca gua------- ---------- 2761 -(-------- ---------- ---------- ---------- -----agca) ---------- 2821 -GAACCAA-C UC-GUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUCUA- UAAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAA AC-A-G-AAU 2941 (-AUUA)GUU CA-AC--UUA AAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuuacccc 3121 aaga-----a acaaaaaccu aaucccacug -uaaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA--UAU ACUCA--AU- AG-GG(-GUA 3481 CAG)CUCUAU UG-AA----- acAAGG(ACU -AAA)CCU-a aauug-g-ag -ag-UAA--- 3541 --gccauaau aacuuuu-c- c--------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUUGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(A- AA)-|GAUAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccac--cuc| c--c-aa|-- -------uac cag------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- --------ac aUUGG-AC|- CA-AUCUAUa a--------- 4501 ---------- ---------- (ucaca--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG AUAAUGU-UA 4681 AC|AUAAGUA -ACAA-GAA- ---------- (cuuuu---- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccga-GCA UAA--gcuua c|----auca 4801 gaac----ga ---------- ----(--aua cu)c-u|--a cugaua---- ---------- 4861 ---auuaa-- -caa------ ---------- ---------- ---------- ---------------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uug--|-- 6481 -u-uaacCC- -(AACACA)G G|CAUGC--- ----(acac- ------)--- ----CGGAA| 6541 |---AGAU-U U--AAAGAAA -UAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acGAAUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacaa- ------)--- ---------- 6901 ------UUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uac)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AC -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AACU-)GAGG AC|CU-GUAU GAAUGGCCAC A-CGAGGAUU 7261 CU-------- ---------- -------ACU GUCUCCUAUU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----GAU CCUAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AAU UA|--A-UCA GCU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------auua acaauuauu( 7561 aaacacc)aa uaggaacaaa cacacauaau a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-CU -GC---C-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA AAACAAACC- )CUCC-GA|A |u|ga---|< 8221 uaagu----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acca-agac( -ccacaa--- )gucaa-agu --ccauagu- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa ua)--|---- 9001 UUGAUCAAC- |GAA-ACCAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(C--CCGU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--UA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----auca-- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACC-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U gaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uauaaa-> 9541 ---------- ---------- -agc-gccuu aag------- ---------- -------ucu 9601 ---------- --aaauggau (gaaauua-a ucuca)a-cc -ca------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ug 9961 cuy(aaaacc a--)gagccc ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.novem 10775 bp RNA RNA 09-JUL-1997 DEFINITION Mitochondrion Dasypus novemcinctus.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y11832 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Dasypus novemcinctus. ORGANISM Mitochondrion Dasypus novemcinctus. REFERENCE 1 (bases 1 to 17056) AUTHORS Arnason,U., Gullberg,A. and Janke,A. TITLE group relationship between Xenarthra (Edentata) and Ferungulates Phylogenetic analysis of mitochondrial DNA suggest a sister JOURNAL Mol. Biol. Evol. 14, 762-768 (1997) STANDARD No information REFERENCE 2 (bases 1 to 17056) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (12-MAR-1997) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y11832 BASE COUNT 595 a 353 c 272 g 358 t 9197 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAGA 301 |CCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 CAA(AACA)U UUAccaaaua cua------- ---------- ---------- ---------- 901 ------(--- --)------- |-ac-uaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uacua-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCUAU AGAA-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagaccc ccug------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaua 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAcuaa-uu- 2101 uuggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuuaguca 2701 aau-auCCCG AA-ACCAG-A CG-AGCUACU UAU-GGA-Ca gua------- ---------- 2761 -(-------- ---------- ---------- ---------- -----auua) ---------- 2821 -GUACUAA-C UC-AUCUAU( GUCGCAA-A) AUAG-UGAGA --AGAUCUG- UAAGUAG-AG 2881 GU(G-AAAG) ACC-AACC-G A-GCCUGGUG AUAGCU-GGU UGCCC--AGA AC-A-G-AAU 2941 (-UUUA)GUU CA-AC-UUAA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaucuca 3121 agaa-----c cacuccuuaa ucuuaau--- -auaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UUAA-AUAU ACUCA--AU- AG-AG(-GUA 3481 CAG)CUCCAU UG-AA----- -acAGG(UAU UAAA)CCU-g cacag-g-ag -ag-UAA--- 3541 --gccguaua aaacacu-u- ac-------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(A- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccac--cuc| c--c-aa|-- -------ccu aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aCUGG-GC|- CA-AUCUAUa u--------- 4501 ---------- ---------- (aa-----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG AUAAUGU-UA 4681 GU|AUAAGUA -ACAA-GAA- ---------- (uauu----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccgu-GCA UAA--gugua u|----auca 4801 gacc----gg ---------- ----(--aua ga)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 --auaggca( ccaaacuacc accaaacaau aacaa)ugcc auacacc--- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uug--|-- 6481 -u-uaauCC- -(AACACA)G G|CAUGC--- ---a(uaacu a-----)a-- ----CGGAA| 6541 |---AGAU-U U--AAAGGAA -UAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acGAAUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacaa- ------)--- ---------- 6901 ------UUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cac)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAUU-)AAGG AC|CC-GUAU GAAUGGCUAA A-CGAGGUUU 7261 CU-------- ---------- -------ACU GUCUCCUAUU CCCU-AU-CA ----GUAAAA 7321 UU|G|ACCUU -c-CG(U-GA AGAGG)CGGG AAU----AAU CAUAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AAU UA|--A-CUA GAU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------g caauaucaac auauccauc( 7561 --aaca-)ga uauaaaacag aaugaua--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-CU -AU---U-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA CAGCAAAAC- )CUCC-GA|A |u|ga---|< 8221 cagc------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcca-agac( -caaccg--- )gucaa-agc --ccauaac- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------g-a 8881 a|--accaAU UGAUC-CA-- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aaa au)--|---- 9001 -UGACCAAC- |GGA-ACCAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUCCAG 9061 AG(C--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-AAAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----acca-- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U aaggcca-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uacaag-> 9541 ---------- ---------- aggc-gccuu aaa------- ---------- -------uca 9601 ---------- --aaauagau (gaaaua--a ucuca)a-cc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 ccu(aagcc- ---)aggacc u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Hyrac 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.capen 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Procavia capensis.; . ACCESSION U97335 KEYWORDS . SOURCE Mitochondrion Procavia capensis. ORGANISM Mitochondrion Procavia capensis. REFERENCE 1 (bases 1 to 1645) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V .G., Amrine,H.M. and Stanhope,M.J. TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1645) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97335 BASE COUNT 592 a 348 c 279 g 358 t 9198 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |ACU--AGC| CUG------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UCAacuauua acc------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-aaaA- -GUAU-A(-G GAGA)UAGAA -Aguu----- 961 -------<-- ---uacu--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-AGCGCCAU AGAG-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagauaa uuua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-g u-AACU GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAacaa-gc- 2101 cugacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuguagcca 2701 gga-acCCCG AA-ACCGG-A CG-AGCUACC UAC-GAG-CA guuu------ ---------- 2761 -(-------- ---------- ---------- ---------- ------uca) ---------- 2821 -GAACCAA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGACUUG- UAGGUAG-GG 2881 GU(G-AAAA) GCC-AACC-G A-GCCCGGUG AUAGCU-GGU UAUCC--AGA AU-A-G-AAU 2941 (-UUUA)GUU CG-AC-CUAA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccaaa 3121 caaa-----c acacaauuca ccu------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UUAG-AUAU ACUCA--AA- AG-AG(-GUA 3481 CAG)CUCUUU UG-AU----- -gcAGG(AUA -CAA)CCU-U AAuua-g-ag -ag-UAA--- 3541 ---uccaacu acuaauu--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CCAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cuaa--cuc| c--u-aa|-- -------aau aag------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aCUGG-AU|- CA-AUCUAUu a--------- 4501 ---------- ---------- (guac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 AU|AUAAGUA -ACAA-GAA- ---------- (aauuu---- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-cccacGCA UGA--acuua u|----auca 4801 ga-a-----a ---------- ----(--au- gc)c-a|--a cugaca---- ---------- 4861 ---guuaa-- -ca------- ---------- ---------- ---------- -------<-- 4921 --cauaaua( uacuaccacc accaaaacaa cacu-)uauu agacaa---- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-uaacCC- -(AACCCA)G G|CAUGC--- ---u(ucuau a-----)a-- ----GGGAA| 6541 |---AGAU-U A--AAAGAGA -UAAA-AGGA ACUCAGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUUAAG|C-- ---------- ---------- (-auagcaa- ------)--- ---------- 6901 ------GUA- UUU-AAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cau)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAUU-)AGGG AC|UG-GUAU GAACGGCCAC A-CGAGGGCU 7261 AA-------- ---------- -------ACU GUCUCUUAUC UCCA-AU-CA ----GCGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAC----AAA AAUAUAAGAC GAGAAG-ACC 7381 CCAUGG-|-A GCUUC--AAU UA|--A-CUA AUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -auuauaaaa acacaaauc( 7561 caag---)ga cauaaaaaaa auauuaa--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UU -AG---C-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAACC- )CUCC-GA|A |u|ga---|< 8221 cauag----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-aggc( uuaacua--- )gccaa-agu --accaa--- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--aucuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UGG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCCU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGGC| 9121 AU-CC-CAUU GG-UG(--UA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGCCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----ccca-- 9301 >--------- ---------- --U-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->C aaggccu-ac ua-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --auaaau-> 9541 ---------- ---------- cagc-gccuu a-g------- ---------- -------cc- 9601 ---------- --uaauuuau (gaaaua--a ucuua)a-cc -cc------- ---------- 9661 ---------- ---------| ------(--- )--------- --------ag 9961 ucc(gagaca a--)gggcuu cguugggg~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Insec 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.hotte 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Amblysomus hottentotus.; . ACCESSION U97336 KEYWORDS . SOURCE Mitochondrion Amblysomus hottentotus. ORGANISM Mitochondrion Amblysomus hottentotus. REFERENCE 1 (bases 1 to 1678) AUTHORS .G., Amrine,H.M. and Stanhope,M.J. Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1678) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97336 BASE COUNT 603 a 314 c 248 g 401 t 9209 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------uaau 301 |ccu--agc| cua------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 CAA(AACA)U UUAuuugcuu ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-auucaAA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---aauaau- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGAGCUAU AGAG-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagauaa guuu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAcua--ac- 2101 uugacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuaagcca 2701 aaa-uuCCCG AA-ACCAG-A CG-AGCUACU UAA-AGG-CA GUCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----ua-u-) ---------- 2821 -GGACCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUCUU- UAAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCCUGGUG AUAGCU-GGU UGCCC--AGG AA-AAG-AAU 2941 (-UUAA)GUU CU-AC-CUAA GAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaccaaaa 3121 aaga-----u ccaauaacau cauauguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-C -UUAG-UUUU AAUCA--AA- AG-AG(-GUA 3481 CAG)CUCUUU UG-AU----a --aAGG(AUU -CAA)CCU-U CAuua-g-ag -ag-UAA--- 3541 --cuacaacc ccua-cc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- --aa--cuc| c--u-aa|-- -------cac aac------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aCUGG-GC|- CA-CUCUAUA U--------- 4501 ---------- ---------- (uuaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA CUAAUGU-UA 4681 AU|AUAAGUA -ACAA-GAA- ---------- (-uuau---- ---------- ---------- 4741 ---------- -----)---- ----a-|UUC U-ccac-GCA CAC--cuuua u|----uuca 4801 gacc----ua ---------- ----(---au aa)u-a|--a cugaca---- ---------- 4861 ---auuaa-- -caau----- ---------- ---------- ---------- -------<-a 4921 aaauaga-au cacucaccua auaaacuuua --ucuauuaa auaa------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAACCC- -(GACACA)G G|AGUGC-a- ----(cuuca a-----)--- ----AGGAA| 6541 |---AGAU-U U--AAAGAGA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAAUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCU-<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uac)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAUU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGAUU 7261 UA-------- ---------- -------ACU GUCUCUUAUC UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAA CAUAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|--A-CUA AUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -cuaacuuau aaaaucacc( 7561 aaua---)gg cacaaaacaa aauuaaac-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UU -AG---C-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAACACAAC- )CUCC-GA|A |u|gau--|< 8221 aaau------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucu-agac( -uuacaa--- )gucaa-aau --uuaa---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------au 8881 c|--aauuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|---- 9001 UUGAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUACAG 9061 AG(U--CCAU )AUCGACAAC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GC)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----uaauu- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-- aaggccu-ac uu-c------ 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----ac-cg> 9541 ---------- ---------- aaga-gccuu aacaa----- ---------- ---------- 9601 ---------- --aaaauuau (gaaaua--a ucuua)a-uu -cc------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 ccc(uagaac a--)gggcuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.europ 10775 bp RNA RNA 11-JAN-191 DEFINITION Erinaceus europeus. ACCESSION No information KEYWORDS No information. SOURCE Erinaceus europeus. ORGANISM Erinaceus europeus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X88898 LOCUS MTEECOMSQ 17442 bp DNA UNA 22-JAN-1996 DEFINITION E.europaeus complete mitochondrial DNA sequence. ACCESSION X88898 NID g1165126 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; complete sequence; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; mitochondria; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Ser(AGY); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Erinaceus europeus. ORGANISM Mitochondrion Erinaceus europeus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Insectivora; Lipotyphla; Erinaceidae; Erinaceinae; Erinaceus. REFERENCE 1 (bases 1 to 17442) AUTHORS Krettek,A., Gullberg,A. and Arnason,U. TITLE Sequence analysis of the complete mitochondrial molecule of the hedgehog, Erinaceus europaeus, and the phylogenetic position of the Erinaceidae JOURNAL J. Mol. Evol. 41, 952-957 (1995) REFERENCE 2 (bases 1 to 17442) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (21-JUN-1995) U. Arnason, University of Lund, Dept of Genetics, Division of Evolutionary Molecular Systematics, Solvegatan 29, 22362 Lund, SWEDEN COMMENT NCBI gi: 1165126 FEATURES Location/Qualifiers source 1..17442 /organism="Erinaceus europeus" /mitochondrion /note="complete sequence" tRNA 1..66 /gene="tRNA-Phe" /product="transfer RNA-Phe" rRNA 67..1037 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1038..1105 /gene="tRNA-Val" /product="transfer RNA-Val" rRNA 1106..2668 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2669..2738 /gene="tRNA-Leu (UUR)" /product="transfer RNA-Leu" misc_feature 2740..3693 /note="NADH dehydrogenase subunit 1" tRNA 3694..3762 /gene="tRNA-Ile" /product="transfer RNA-Ile" tRNA complement(3759..3832) /gene="tRNA-Gln" /product="transfer RNA-Gln" tRNA 3832..3900 /gene="tRNA-Met" /product="transfer RNA-Met" misc_feature 3904..4947 /note="NADH dehydrogenase subunit 2" tRNA 4949..5015 /gene="tRNA-Trp" /product="transfer RNA-Trp" tRNA complement(5020..5090) /gene="tRNA-Ala" /product="transfer RNA-Ala" tRNA complement(5091..5163) /gene="tRNA-Asn" /product="transfer RNA-Asn" rep_origin 5164..5199 /note="complementary strand" tRNA complement(5200..5268) /gene="tRNA-Cys" /product="transfer RNA-Cys" tRNA complement(5270..5339) /gene="tRNA-Tyr" /product="transfer RNA-Tyr" misc_feature 5341..6885 /note="cytochrome c oxidase subunit I" tRNA complement(6884..6951) /gene="tRNA-Ser (UCN)" /product="transfer RNA-Ser" tRNA 6959..7027 /gene="tRNA-Asp" /product="transfer RNA-Asp" misc_feature 7029..7712 /note="cytochrome c oxidase subunit II" tRNA 7714..7778 /gene="tRNA-Lys" /product="transfer RNA-Lys" misc_feature 7781..7987 /note="ATPase subunit 8" misc_feature 7942..8622 /note="ATPase subunit 6" misc_feature 8622..9404 /note="cytochrome c oxidase subunit III" tRNA 9406..9479 /gene="tRNA-Gly" /product="transfer RNA-Gly" misc_feature 9480..9824 /note="NADH dehydrogenase subunit 3" tRNA 9827..9895 /gene="tRNA-Arg" /product="transfer RNA-Arg" misc_feature 9896..10192 /note="NADH dehydrogenase subunit 4L" misc_feature 10186..11562 /note="NADH dehydrogenase subunit 4" tRNA 11564..11629 /gene="tRNA-His" /product="transfer RNA-His" tRNA 11630..11689 /gene="tRNA-Ser (AGY)" /product="transfer RNA-Ser" tRNA 11689..11759 /gene="tRNA-Leu (CUN)" /product="transfer RNA-Leu" misc_feature 11764..13575 /note="NADH dehydrogenase subunit 5" misc_feature complement(13572..14105) /note="NADH dehydrogenase subunit 6" tRNA complement(14105..14173) /gene="tRNA-Glu" /product="transfer RNA-Glu" mRNA 14177..15316 /gene="cyt b" /product="cytochrome b" tRNA 15317..15386 /gene="tRNA-Thr" /product="transfer RNA-Thr" tRNA complement(15388..15454) /gene="tRNA-Pro" /product="transfer RNA-Pro" misc_feature 15455..17442 /note="control region" BASE COUNT 5932 a 3500 c 2186 g 5824 t ORIGIN BASE COUNT 590 a 281 c 259 g 433 t 9212 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ C--------- ------CAAA 301 |UCU--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAU 841 UAA(AACA)U UCAuuuauaa c--------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-acCA- -GUAU-A(-G GAGA)UAGAA -Auuuaua-- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-AGCGCAAU AGAA-AAA-- ----GUACC( -GUAA-)GG- ---AAC-GAc 1681 UGaaagaaua uu-------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-<--aa--- ---------- ---------- ---------- 1861 ----->AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---auuaac 2041 --)------- -----CUU-G AUCUUU(--- G-AUA)AUGA |UUU-AGCCA GAaaaa-aa- 2101 uuaacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuaaagcua 2701 auuaccCCGG AA-ACCAG-A CG-AGCUAUC UAA-UAA-UA ACUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ------ucu) ---------- 2821 -GAGUCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AAAUUAC- UAGAUAG-AG 2881 GU(G-AAAC) GCC-UAUC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAA UA-A-G-AAU 2941 (-UUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuau 3121 auaa-----u auauaauaaa uu-------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-AGAU AAUUC--UA- AG-AG(-GGA 3481 CAG)CUCUUA GA-AU----- -aaGGG(GUA -CAG)CCC-U AAuca-g-ag -ag-UAA--- 3541 --cuauauuc aauaauc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cuaa--cuc| c--u-ga|-- -------uuu a--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------caa aUUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUACUGC-UA 4681 AU|AUGAGUA -ACAG-AA-- ---------- (uaau----- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cua--GCA UAA--uuuua u|----auca 4801 gauc----ga ---------- ----(--aua uc)u-c|--g cugaua---- ---------- 4861 ---guuaa-- -caau----- ---------- ---------- ---------- -------<-- 4921 --ucaauga( acaaaaucau uaauuaaaua a----)ucau uuauaaa--- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAGACC- -(AACACA)G G|UGUGC--- ----(auuua ------)--- ----AGGAA| 6541 |---AGAU-U A--AAUAGGC -CAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAGCUC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-aucucaa- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aua)------ ---------- ---------| 7141 ---GUU--AA C-|GG-C|-C -GC-GU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAUU-)AAGG AC|UC-GCAU GAAUGGCUUC A-CGAGAGCU 7261 UA-------- ---------- -------ACU GUCUCCUGAC CUAA-AU-CA ----GUGAAA 7321 UU|G|ACUUU CC-CG(U-GA AAAGG)CGGG AAU----ACU AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGU AU|--A-AAA ACU--AA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -gaccaauuu auaauaacc( 7561 uaag---)gg uauauaaaua aguuaa---- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --CUA-G-UU -AU---A-AA CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAGAAC- )CUCC-GA|A |u|gau--|< 8221 ucuaa----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ucuu-agac( -ucacaa--- )gucaa-agu --aug----- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--auuuAU UGACC-CAGU A--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aau uc)--|--UA 9001 CUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -AC)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----aaau-- 9301 >--------- ---------- --A-UUU-CU CC--(UAGU- AC(-GAAA)G GACC-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U aaggcca-ac ug-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --auauau-> 9541 ---------- ---------- caga-gccuu aag------- ---------- -------cag 9601 ---------- --auauagau (gaauua--a ucuua)a-uc -ua-ga--cu g--------- 9661 ---------- ---------| ------(--- )--------- -------|ag 9961 cc-(aaaaua ag-)-ggcuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.parad 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Solenodon paradoxus.; . ACCESSION AF076646 KEYWORDS . SOURCE Mitochondrion Solenodon paradoxus. ORGANISM Mitochondrion Solenodon paradoxus. REFERENCE 1 (bases 1 to 2603) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2603) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (06-JUL-1998) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF076646 BASE COUNT 607 a 292 c 275 g 394 t 9207 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------caaa 301 |gcu--agc| cca------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 UAA(AACA)U UUAguaacca ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-auuA- -GUAU-A(-G GAGA)UAGAA -Aauu----- 961 -------<-- ---uaauu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 uugaaagauu auu------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ----aaaa-g c-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaaa 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAcaua-cu- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuaaguua 2701 aaa-aaCCCG AA-ACCAG-A CG-AGCUAUC CAU-GAG-CA GU-g------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aca-) ---------- 2821 -gaacuAA-C UC-AUCUAU( GUgGCAA-A) AUAG-UGAGA --AGACUUG- UGGAUAG-AG 2881 AU(G-AAAA) GCU-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGG AA-AAG-AAC 2941 (-AUAA)GUU CU-GC-auua aau-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaccacca 3121 aa-a-----c acaa-aauuu aa-auguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-u -uaaa-uguU AACCU--AA- AG-GG(-GUA 3481 CAG)CCCUUU AG-GC----a --aAGG(AUA -AAA)CCU-U AAuca-g-ag -ag-UAC--- 3541 --guaauauu uuaaaacc-- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ACAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAG|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- --aa--cuc| c--u-ga|-- -------aca ca-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aCUGG-AC|- CA-UUCUAUU A--------- 4501 ---------- ---------- (auau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG AUACUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (-uuau---- ---------- ---------- 4741 ---------- -----)---- ----a-|UUC U-ccac-GCA UAA--guuua u|----auca 4801 gacc----ag ---------- ----(--aua aa)c-u|--a cugaua---- ---------- 4861 ---guuaa-- -cag------ ---------- ---------- ---------- -------<-c 4921 auuauaauaa aacacauaca caaagucauu auuaauaaaa a--------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UGACCC- -(AACACA)G G|CAUGC--- ----(-aau- a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aaAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-aucacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u auu)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUUUU(-U AAAU-)AAGG AA|UU-GCAU GAAUGGCUUG A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUUUUUUAAU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-AG(U-GA AGAGG)CUGG GAU----UAA UAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUG GUU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- cuaauaagaa cuacaaacc( 7561 gaca---)gg acuaaaaauu auaugac--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAG-A-CC -AG---C-AA UUUUGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------UA UAAAAAAAC- )CUCC-GA|A |u|gac--|< 8221 naa------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- auuu-agac( -uuacaa--- )gucaa-aau --aaac---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------au 8881 c|--auacAC UGAUC-CAU- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------auu au)--|---- 9001 AUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -CC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----caac- 9301 >--------- ---------- --A-CUA-UU CC--(CAGU- AC(-GAAA)G GACA-)AGAA 9361 U--AG-- aaggccc-ac uu-u------ 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----acag> 9541 ---------- ---------- aaga-gccuu caagc----- ---------- ---------- 9601 ---------- --cuauauau (gauaaa--g ucuca)a-ua -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ua 9961 ccc(uagacc a--)ggguug ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.aquat 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Scalopus aquaticus.; . ACCESSION AF069539 KEYWORDS . SOURCE Mitochondrion Scalopus aquaticus. ORGANISM Mitochondrion Scalopus aquaticus. REFERENCE 1 (bases 1 to 2604) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2604) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069539 BASE COUNT 593 a 317 c 295 g 367 t 9203 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------uaaa 301 |gcu--agc| cca------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAcuuagua ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-----aAA- -GUAU-A(-G GAGA)UAGAA -Auu------ 961 -------<-- ---acaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAC-GA- 1681 gugaaagaau auauu----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ----aaaa-g u-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuuaacc 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGA |GCU-AGCUA GCaga--cc- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuaaguua 2701 agc-ccCCCG AA-ACCAG-A CG-AGCUACC UAC-GAG-CA GC-------- ---------- 2761 -(-------- ---------- ---------- ---------- ---auaaca) ---------- 2821 -gaGCGAA-C UC-GUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUA- UAGGUAG-UG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-A-G-AAU 2941 (-UUUA)GUU CA-GC-uuua au--<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuauacaga 3121 caag-----c ccucaaaacu cuaauguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------aa-u -uaaa-CGUU AGUCU--AA- AG-AG(-GUA 3481 CAG)CCCUUU AG-Ac----g --cAGG(AUA -CAA)CCU-U AAcug-g-ag -ag-UAA--- 3541 --guucauaa ucuaacc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- --aa--cuc| c--c-ag|-- -------acu uu-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------a aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (acaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGC-UA 4681 GU|AUGAGUA -ACAA-GAA- ---------- (-auag---- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccg-GCA CAG--guuua u|----auca 4801 gauc----gg ---------- ----(---au gc)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- ---------------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(caaac a-----)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-augaaaa- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g caa)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAUU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UCUA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAU ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UA|--A-CCA GUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----au aagguguaau acuaaaccc( 7561 aacca--)gg ggauaaaaaa ccuaaaac-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-CC -GG---C-AA UUUAGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA AAAAACAAC- )CUCC-GA|G |a|gau--|< 8221 uuca------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gucg-agac( -cuacaa--- )gucaa-aac cugaaa---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ------aaaa 8881 u|---uuaAU UGAUC-CAAC A--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ac ca)--|--UG 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GA)AGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----auau- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-- aaggcca-ac uc-u------ 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----acag> 9541 ---------- ---------- gaga-gccuu aaaau----- ---------- ---------- 9601 ---------- --uaauagau (gauauc--a ucuca)a-uc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ag 9961 ccc(aagaaa a--)gggcuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.palus 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Sorex palustris.; . ACCESSION U97343 KEYWORDS . SOURCE Mitochondrion Sorex palustris. ORGANISM Mitochondrion Sorex palustris. REFERENCE 1 (bases 1 to 2601) AUTHORS .G., Amrine,H.M. and Stanhope,M.J. Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2601) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97343 BASE COUNT 576 a 325 c 259 g 407 t 9208 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------uaaa 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(AACA)U UUAucuac-- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |----uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ----aacu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 gugaaagaga uaauu----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ----aaaa-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaucc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAaaaa-cu- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuaaguua 2701 aac-acCCCG AA-ACCAG-A CG-AGCUAUC CAU-GAA-CA gcc------- ---------- 2761 -(-------- ---------- ---------- ---------- ---caaaua) ---------- 2821 -GAGCAAA-C UC-GUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUG- UGGAUAG-AG 2881 GU(G-AAAA) GCC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA UA-A-G-AAU 2941 (-UUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuac---ua 3121 caaa-----a acacauaauu auaccguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AAUCU--AA- AG-GG(-GUA 3481 CAG)CCCUUU AG-AC----u --aAGG(AUA -CAA)CCU-U AAuua-g-ag -ag-UAA--- 3541 --a-auauau uaauaac-c- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uuaa--cuc| c--u-aa|-- -------uuu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acc aCUGG-AC|- CA-AUCUAUU A--------- 4501 ---------- ---------- (accu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUACUGU-UA 4681 AU|AUGAGUA -ACAA-GA-- ---------- (-uuuu---- ---------- ---------- 4741 ---------- -----)---- ----u-|AUC U-ccua-GCA CAA--guuua u|----guca 4801 gacc----ga ---------- ----(---au aa)c-a|--a cugaua---- ---------- 4861 ---guuaa-- -cag------ ---------- ---------- ---------- -------<-- 4921 ---ccaaaua aauauaaauu uacauaaacc auuuauuuac cc-------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(AACACA)G G|UGUGC--- ----(a-cua ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a acu)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCCU(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUAUU UCUA-AU-CA ----GUGAAA 7321 UU|G|ACCUU UC-CG(U-GA AGAGG)CGGA AAU----AUC CCAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CCU AAC--CC--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----aa caggauaaca cuuaauucc( 7561 aucaa--)gg acuaacaaau auccuaacu- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --GGG-U-UA -U----a-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAAAUAAC- )CCCC-GA|G |a|acu--|< 8221 uucu------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acua-agac( -uaacaa--- )gucaa-agu -aaaac---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------uu 8881 u|--uuaaAU UGAUC-CAG- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------ucc ua)--|---- 9001 CUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCCU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GC)AGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----aaac-- 9301 >--------- ---------- --A-UUU-UU CC--(CAGU- AC(-GAAA)G GACA-)AGAA 9361 A--AA-- agggccc-ac uc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caa-ac> 9541 ---------- ---------- gagn-gcccu caagu----- ---------- ---------- 9601 ---------- --aaauaaau (gauauu--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 ccu(uagacc a--)agguuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.telfa 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Echinops telfairi.; . ACCESSION AF069540 KEYWORDS . SOURCE Mitochondrion Echinops telfairi. ORGANISM Mitochondrion Echinops telfairi. REFERENCE 1 (bases 1 to 2580) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2580) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069540 BASE COUNT 568 a 308 c 263 g 416 t 9220 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------uaaa 301 |ucu--agc| cca------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAUA 841 UAA(AACA)U UUGuagacau ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-----aAA- -GUAU-A(-G GAGA)UAGAA -Au------- 961 -------<-- ---auuccau aga------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-G-CGCUAU AGAG-AUA-- ----GUACC( -GUAA-)GGG ---AAA-AR- 1681 UGaaagauaa cuua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuaaac 2041 --)------- -----CUU-A UACCUU(UU- GCAUA)AUGA |GUA-AACUA GAaaau-uu- 2101 uugacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ggaa->---- --(------) ---------- ---------- -cuuuagcca 2701 aaa-acCCCG AA-ACCAG-A CG-AGCUACC CUA-GAG-CA AUCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----uguu-) ---------- 2821 -ggauCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUU- AAGGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCCUGGUG AUAGCU-GGU UGCCC--AAG AA-A-G-AAU 2941 (-UUAA)GUU Cg-AC-cuaa aaa-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuac---ua 3121 ccaa-----u aacuauaaau uuaauguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------uu-u -uuag-uUAU AAUUA--AA- AG-AG(-GUA 3481 CAG)CUCUUU UA-AU----u --gAGG(AAA -CAA)CCU-U AUuua-g-ag -ag-UAA--- 3541 --acaccaaa uaauuuc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GACAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---a--cuc| c--u-aa|-- -------auu ua-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aUUGG-GC|- AA-AUCUAUU C--------- 4501 ---------- ---------- (uuau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCU AAUCUGU-UA 4681 AC|AUAAGUA -ACAA-GAG- ---------- (-aauaaau- ---------- ---------- 4741 ---------- -----)---- ------|CUC U-cccc-GCA CAA--guaua u|----auca 4801 gaac----ga ---------- ----(---au ac)u-c|--g cugaua---- ---------- 4861 ---auuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 -ccuagu--- -aauuauaca aacu--cuag --acuauuau auuuacgc-- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uug--|-- 6481 -u-UAACCC- -(GACACA)G G|AGUGC-a- ----(cucua a-----)--- ----AGGAA| 6541 |---AGAU-A A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c uaAAAUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------c cau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCAAC A-CGAGGAUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UCUU-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----UAG AACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAU UA|--A-UAA CCC--AA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- --uuguuucu cacaaaacc( 7561 aaaa---)gg cauaacuaua acuau----- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --AUG-G-AG -AA---A-GA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA UAAUUAAAC- )CUCC-GA|A |u|gau--|< 8221 auau------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 --------ac aucu-agac( -cuacaa--- )gucgc-aau --uaaa---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------au 8881 c|--acuuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uu ac)--|---- 9001 UUGAACAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(U--UCAU )AUCGACGAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-AGAU GG-UG(--CA -AC)AGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ---uuauua- 9301 >--------- ---------- --A-UCU-CU CC--(UAGU- AC(-GAAA)G GACC-)AGAG 9361 A--GA-- aaggcca-ac uu-c------ 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----uaac> 9541 ---------- ---------- cagc-gccuu aacc------ ---------- ---------- 9601 ---------- --aaaccaau (gauaua--a ucuua)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ug 9961 cuc(uagaua a--)gagcuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Lagom 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.O.cunic 10775 bp RNA RNA 03-JUL-1998 DEFINITION Mitochondrion Oryctolagus cuniculus.; 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; D-loop; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION AJ001588 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; D-loop; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Oryctolagus cuniculus. ORGANISM Mitochondrion Oryctolagus cuniculus. REFERENCE 1 (bases 1 to 17245) AUTHORS Gissi,C., Gullberg,A. and Arnason,U. TITLE The complete mitochondrial DNA sequence of the rabbit, Oryctolagus cuniculus JOURNAL Genomics 50, 161-169 (1998) STANDARD No information REFERENCE 2 (bases 1 to 17245) AUTHORS Gissi,C. TITLE Direct Submission JOURNAL Submitted (17-SEP-1997) Gissi C., Dept. of Genetics, Division of Evolutionary Systematics, University of Lund, Solvegatan 29, Lund, 223 62, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ001588 BASE COUNT 574 a 322 c 281 g 402 t 9196 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAC 301 |ACU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(ACCA)U UCAccccaua ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-aaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---auaucc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaagauua guua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-g c-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuacuu 2041 --)------- -----CUC-U UACCUU(UU- GCAUA)AUGA |AUU-AGCUA GAaaau-cc- 2101 uuagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -uuuuaguua 2701 aga-acCCCG AA-ACCAG-A CG-AGCUAUU UAU-GAG-Ca guu------- ---------- 2761 -(-------- ---------- ---------- ---------- -----gaaa) ---------- 2821 -GAACGAA-C CC-GUCCAU( GUGGCAA-A) AUGG-UGGGA --AGACUUG- UAAAUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AU-A-G-AAU 2941 (-UUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuuccuaa 3121 agga-----c auaaaacccu aau------- -gaaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-UGUU ACUCU--AA- AG-AG(-GGA 3481 CAG)CUCUUU AG-au----- -auaGG(AUA -CAG)CCU-u uuaua-a-ag -ag-UAA--- 3541 --guuauuuu ucaaucc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(UUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cgaa--cuc| u--u-au|-- -------aaa ccc------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- --------ua aCUGG-AC|- UA-AUCUAUa a--------- 4501 ---------- ---------- (aucu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGC-UA 4681 AU|AUAAGUA -ACAA-GAA- ---------- (uacua---- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccuu-GCA CAA--gcuua u|----auca 4801 gauc----gg ---------- ----(--au- gc)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -cag------ ---------- ---------- ---------- -------<-c 4921 cccaauaga( aauaauccac aaauuaauaa -----)ucua uuaacuuuca ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-uaacCC- -(AACACA)G G|AGUGC--- ----(uauau ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -AAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccUAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uac)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAUU-)GGGG AC|UA-GCAU GAAUGGCAAC A-CGAGGGUU 7261 AA-------- ---------- -------ACU GUCUCUUUCU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--U-UUA ACC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------a cacuuccuuu auucuacuc( 7561 uacaau-)ga gccuaaccaa ggaaauccc- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-G-UU -AA---A-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAAAUCAAC- )CUCC-GA|A |u|ga---|< 8221 uuuua----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccu-agac( ccaacaa--- )gucaa-agc --aauuaua- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--auaaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aua au)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUUAG 9061 AG(U--CCCU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----aagu-- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U agagccu-ac ug-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --cacca--> 9541 ---------- ---------- caga-gcucu aa-------- ---------- -------guc 9601 ---------- --caaaagau (gaaaua--a ucuua)a-uc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 ccu(agacc- ---)agagcu a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Macro 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.E.rufes 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Elephantulus rufescens.; . ACCESSION U97339 KEYWORDS . SOURCE Mitochondrion Elephantulus rufescens. ORGANISM Mitochondrion Elephantulus rufescens. REFERENCE 1 (bases 1 to 2580) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V .G., Amrine,H.M. and Stanhope,M.J. TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2580) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97339 BASE COUNT 569 a 321 c 279 g 389 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAGA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(AACA)U UCAcuaa--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-gu-A- -GUAU-A(-G GAGA)UAGAA -A-------- 961 -------<-- ---cauaacg c--------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCAAU AGAG-AUA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaagauuc cua------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AACA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auaaccc 2041 --)------- -----CUC-C UACCUU(UU- GCAUA)AUGG |AUU-AGCUA GAaaau-ag- 2101 uugacaaaaa ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -gauc>---- --(------) ---------- ---------- uuauuagcca 2701 aca-ucCCCG AA-ACCAG-A CG-AGCUACU CAU-GAA-Ca auu------- ---------- 2761 -(-------- ---------- ---------- ---------- ----gucag) ---------- 2821 --AAUGCA-C UC-UUCUAU( GUGGCAA-A) AUAG-UGAGA --UGAUUUG- UGAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCCUGGAG AUAGCU-GGU UGUCC--AAA aa-aaG-AAU 2941 (-CUAA)GUU CA-UC-CUAA AGC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -acuaccuau 3121 aaaa-----a ucauuauuac aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GC-U -UUAG-AGAA AUUCA--AU- AG-GG(-GGA 3481 CAG)CUCUAU UG-AA----- --aAGG(AUA -CAA)CCU-G UAaag-g-ag -ag-UAA--- 3541 --gaaauaua aguucac--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- caac--cuc| c--c-uu|-- -------acc u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aUUGG-AC|- UA-UUCUAUu a--------- 4501 ---------- ---------- (uaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGC-UA 4681 GU|AUGAGUA -ACAA-GAA- ---------- (uuau----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccgc-GCG CAA--gcuua u|----auca 4801 ga-a----cg ---------- ----(--gau gc)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -cga------ ---------- ---------- ---------- -------<-- 4921 ccuaa-cag( ucauaaucca cacauaaacc cc---)cuau uuagccuaa- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-uaauCC- -(GACACA)G G|AGCGC--- ----(-gaca ------)--- ----CGGAA| 6541 |---AGAU-U A--AAAGAAA -GAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acUAACUC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAUU-)AAGG AC|UU-GUAU GAACGGCAAG A-CGAGAGUU 7261 CA-------- ---------- -------ACU GUCUCCUCAU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC -C-CG(U-GA AGAGG)CGGA GAU----AAA GUUAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAU UU|--A-CUU AUC--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -aagucuaac uacuaaucc( 7561 gaca---)gg uauacuucac aucucuc--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAG-A-UA -AA---A-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA AAAAACAAC- )CUCC-GA|A |u|aau--|< 8221 auucu----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcua-ugau( uuaacua--- )aucua-agc --uug----- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-a 8881 a|--uuuaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----acca-- 9301 >--------- ---------- --A-CUU-CU CC--(CAGU- AC(-GAAA)G GAUC-)AGAG 9361 A--AG-<--- ---------- ---------- -------->U gaagccc-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----acaa> 9541 ---------- ---------- aagc-gcuuc agauu----- ---------- --------ag 9601 ---------- ----auuaau (gaaaua--a ucuua)a-uu -aa-ua---- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(aagacc a--)-gggca c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Peris 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.E.asinu 10775 bp RNA RNA 23-JUL-1997 DEFINITION Mitochondrion Equus asinus.; 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X97337 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Equus asinus. ORGANISM Mitochondrion Equus asinus. REFERENCE 1 (bases 1 to 16670) AUTHORS Xu,X., Janke,A. and Arnason,U. TITLE Phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea) The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the JOURNAL Mol. Biol. Evol. 13 (9), 1167-1173 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16670) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-APR-1996) U. Arnason, University of Lund, Dept of Genetics, Division of Evolutionary Molecular, Systematics, Solvegatan 29, 22362 Lund, SWEDEN STANDARD No information REFERENCE 3 (bases 1 to 16670) AUTHORS Xu,X., Gullberg,A. and Arnason,U. TITLE The complete mitochondrial DNA (mtDNA) of the donkey and mtDNA comparisons among four closely related mammalian species-pairs JOURNAL J. Mol. Evol. 43 (5), 438-446 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X97337 Users are requested to refer to the citation of this entry as well as the accession number in their publications. BASE COUNT 579 a 345 c 261 g 395 t 9195 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 UAA(AACA)U UCAccaaacc ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ---aacu--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaugu auua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuaccc 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAauaa-ac- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuaagcua 2701 agc-acCCCG AA-ACCAG-A CG-AGCUACC UAU-GAA-CA GUUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----uaaa-) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUCGCAA-A) AUAG-UGAGA --AGAUUCA- UAGGUAG-AG 2881 GU(G-AAAA) GCC-CAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-caG-AAU 2941 (-CCCA)GUU CA-AA-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuaa 3121 aaac-----c acuuaauucu aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAA-UUAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AU----a --cAGG(AUA -CAA)CCU-U UAuua-g-ag -ag-UAA--- 3541 --gaauaaga uuaaucc-c- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(UUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cuaa--cuc| c--u-aa|-- -------ucu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------uau aCUGG-AC|- UA-UUCUAUC G--------- 4501 ---------- ---------- (acac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (-uuau---- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuu-GCA UAA--gccua u|----auca 4801 gaac----ga ---------- ----(---au ac)u-c|--a cugaua---- ---------- 4861 ---guuaa-- -caac----- ---------- ---------- ---------- -------<-- 4921 -agaauaga( cacaauccaa aaacuaacca -----)ucua uuuagacu-- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAACCC- -(AACACA)G G|UGUGC-a- ----(cccau a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuccca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ucu)------ ---------- ---------| 7141 ---GUUUAAA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AAU CAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUG AUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UC -AG---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAACAAC- )CUCC-GA|G |u|gau--|< 8221 uuaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucu-agac( -uaacca--- )gucaa-aau --acaua--- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ac cu)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCCAG 9061 AG(U--CCAU )AUCGACAAU -uAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AAGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCUU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----cuac- 9301 >--------- ---------- --A-CUU-UU CC--(CAGU- AC(-GAAA)G GACA-)AGAA 9361 A--AG-<--- ---------- ---------- -------->u agggccc-ac uuu------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---auaag-> 9541 ---------- ---------- aagc-gcccu ca-------- ---------- -------aac 9601 ---------- --uaauagau (gacaua--a ucuaa)a-uc -ua-acuaau u--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 ccu(-agaac ---)agggcu c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.cabal 10775 bp RNA RNA 22-NOV-1994 DEFINITION Mitochondrion Equus caballus.; 12S ribosomal RNA; 16S ribosomal RNA; ATPase; ATPase 6; ATPase 8; control region; cytochrome b; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X79547 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATPase; ATPase 6; ATPase 8; control region; cytochrome b; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Equus caballus. ORGANISM Mitochondrion Equus caballus. REFERENCE 1 (bases 1 to 16660) AUTHORS Xu,X. and Arnason,U. TITLE The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region JOURNAL Gene 148, 357-362 (1994) STANDARD No information REFERENCE 2 (bases 1 to 16660) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (06-JUN-1994) to the EMBL/GenBank/DDBJ databases. U. Arnason, University of Lund, Dept. of Genetics, Division Evolutionary Molec. Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X79547 NCBI gi: 577571 BASE COUNT 581 a 341 c 260 g 399 t 9194 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 UAA(AACA)U UCAccaaacc ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaAA- -GUAU-A(-G GAGA)UAGAA -Auuuu---- 961 -------<-- ---aacu--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GUAA-)GGG ---AAC-GA- 1681 UGaaagaugc auua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuaccc 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAauaa-ac- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuaagcua 2701 agc-acCCCG AA-ACCAG-A CG-AGCUACC UAU-GAA-CA GUUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----caaau) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUCGCAA-A) AUAG-UGAGA --AGAUUCG- UAGGUAG-AG 2881 GU(G-AAAA) GCC-CAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AGA AA-caG-AAU 2941 (-UUCA)GUU CA-AA-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuaa 3121 aaac-----u acucaauucu aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-UUAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AU----a --cAGG(UUA -CAA)CCU-U CAuua-g-ag -ag-UAA--- 3541 --gaacaaga uaaaccc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(UUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cuaa--cuc| c--u-aa|-- -------ucu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cau aCUGG-AC|- UA-UUCUAUC A--------- 4501 ---------- ---------- (acac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (-uuau---- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuu-GCA UAA--gcuua u|----auca 4801 gaac----ga ---------- ----(---au ac)u-c|--a cugaua---- ---------- 4861 ---guuaa-- -caac----- ---------- ---------- ---------- -------<-- 4921 -aagauagg( gauaauccaa aaacuaauca -----)ucua uuuaaacc-- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC-a- ----(ucuau a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuucca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ucu)------ ---------- ---------| 7141 ---GUUUAAA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCC(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----GAC UAAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUG AUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UC -AG---C-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAACAAC- )CUCC-GA|G |u|gau--|< 8221 uuaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucc-agac( -uaacca--- )gucaa-aau --auaua--- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ac ca)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCCAG 9061 AG(U--CCAU )AUCGACAAU -uAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AAGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCUU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----cuau- 9301 >--------- ---------- --A-CUU-UU CC--(CAGU- AC(-GAAA)G GACA-)AGAA 9361 A--AG-<--- ---------- ---------- -------->u agggccc-ac uuu------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---acaag-> 9541 ---------- ---------- aagc-gcccu ca-------- ---------- -------aac 9601 ---------- --uaauagau (gacaua--a ucuaa)a-uc -ua-acuaau u--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 ccu(-agaac ---)agggcu c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.simum 10775 bp RNA RNA 25-APR-1997 DEFINITION Mitochondrion Ceratotherium simum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; control region; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION Y07726 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; control region; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Ceratotherium simum. ORGANISM Mitochondrion Ceratotherium simum. REFERENCE 1 (bases 1 to 16832) AUTHORS Xu,X. and Arnason,U. TITLE Ceratotherium simum, and Comparison with the mtDNA Sequence of the Indian Rhinoceros, Rhinoceros unicornis The Complete Mitochondrial DNA Sequence of the White Rhinoceros, JOURNAL Mol. Phylogenet. Evol. 7, 189-194 (1977) STANDARD No information REFERENCE 2 (bases 1 to 16832) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (30-AUG-1996) U. Arnason, University of Lund, Dept. of Genetics, Division Evolutionary Molec. Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y07726 BASE COUNT 588 a 351 c 259 g 380 t 9197 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UGAA 841 CAA(AGCA)U UUAcccaaau cc-------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uuaac-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAC-GA- 1681 UGaaagaagu cuua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cuuaccc 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAacaa-uu- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuaaguua 2701 aac-ccCCCG AA-ACCAG-A CG-AGCUACC UAC-GAA-Ca gucc------ ---------- 2761 -(-------- ---------- ---------- ---------- ---caaaac) ---------- 2821 -GAACGAA-C UC-AUCUAU( GUCGCAA-A) AUAG-UGAGA --AGAUUUA- UAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAA AC-A-G-AAU 2941 (-GUAA)GUU CA-AA-UCUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuaa 3121 aagc-----c cuacaacuuc aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-UUAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUCUUU AG-AC----- -acAGG(AUA -CAA)CCU-U CAuua-g-ag -ag-UAA--- 3541 --gaucuaag ccacac---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ucaa--cuc| c--u-aa|-- -------uuu a--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- --------au aUUGG-AC|- UA-AUCUAUc a--------- 4501 ---------- ---------- (acaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (ccau----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccuu-GCA UAA--gccua u|----auca 4801 gaac----ga ---------- ----(--au- ga)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 --caaaaua( aacacaaccu aacaauaaac uacc-)uauu aaaccaac-- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---ug--|-- 6481 -u-uaacCC- -(AACACA)G G|CAUGC--- ---a(cuuua a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaucua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------au aua)------ ---------- ---------| 7141 ---UUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUUCCC(-U AAAU-)AGGG AC|CU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG AAU----AGC ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--A-CUA AUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----ca aaaaauaaaa ucucu(aacc 7561 cacaucc)ag gggauaacaa aacuuugac- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UU -AG---U-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAGCCAAC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- uucc-agac( -uuacca--- )gucaa-aaa --uauuac-- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ac ca)--|---- 9001 UUGAUCAAC- |GGA-AUAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----caau-- 9301 >--------- ---------- --A-UUU-CU CC--(UAGU- AC(-GAAA)G GAAA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U aaggccc-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---cacaa-> 9541 ---------- ---------- aagc-gccuu -ca------- ---------- -------aau 9601 ---------- --caauagau (gauaua--a ucuaa)a-uc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 ccu(agacc- ---)agggcc ac~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.unico 10775 bp RNA RNA 23-JUL-1997 DEFINITION Mitochondrion Rhinoceros unicornis.; 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH subunit 1; NADH subunit 2; NADH subunit 3; NADH subunit 4; NADH subunit 4L; NADH subunit 5; NADH subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X97336 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH subunit 1; NADH subunit 2; NADH subunit 3; NADH subunit 4; NADH subunit 4L; NADH subunit 5; NADH subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Rhinoceros unicornis. ORGANISM Mitochondrion Rhinoceros unicornis. REFERENCE 1 (bases 1 to 16829) AUTHORS Xu,X., Janke,A. and Arnason,U. TITLE The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the Phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea) JOURNAL Mol. Biol. Evol. 13 (9), 1167-1173 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16829) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-APR-1996) U. Arnason, University of Lund, Dept of Genetics, Division of Evolutionary Molecular, Systematics, Solvegatan 29, 22362 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X97336 Users are requested to refer to the citation of this entry as well as the accession number in their publications. BASE COUNT 603 a 338 c 244 g 392 t 9198 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAA 301 |GCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 CAA(AACA)U UCAcuuaaac cc-------- ---------- ---------- ---------- 901 ------(--- --)------- |-ac-uaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uaau--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCUAU AGAA-AAA-- ----GUACC( -GCAA-)GGG ---AAC-GA- 1681 UGaaagaaau uuua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--cucaccc 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |UUU-AACUA GAacaa-uu- 2101 uuagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuaaguua 2701 aac-acCCCG AA-ACCAG-A CG-AGCUACC UAU-GAA-CA guu------- ---------- 2761 -(-------- ---------- ---------- ---------- ----caaaa) ---------- 2821 --AACAAA-C UC-GUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUA- UAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG UC-A-G-GAU 2941 (-AUAA)GUU CA-AA-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuaccuaa 3121 aagc-----c ccaacaacuc uaau------ -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-UUAU AAUCU--AA- AA-AG(-GUA 3481 CAG)CUCUUU AG-AU----- -ucAGG(AUA -CAA)CCU-c aguua-g-ag -ag-UAA--- 3541 --gaucagaa uuacac---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUCUAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccaa--cuc| c--u-aa|-- -------cuu a--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- --------au aCUGG-AC|- UA-AUCUAUU A--------- 4501 ---------- ---------- (auaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGU-UA 4681 AU|AUGAGUA -ACAA-GAA- ---------- (cuau----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccuu-GCA UAA--gccua u|----auca 4801 gaac----ga ---------- ----(--au- aa)c-c|--a cugaua---- ---------- 4861 ---auuaa-- -caau----- ---------- ---------- ---------- -------<-- 4921 ---aagaua( aacacaaucc aacaacaaac uacc-)uauc aaauca---- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-uaacCC- -(AACACA)G G|CAUGC--- ---a(cuuca a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c auAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaccca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ucu)------ ---------- ---------| 7141 ---GUUUCAA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GUAU GAAUGGCCAC A-CGAGGGUU 7261 UU-------- ---------- -------ACU GUCUCUUACU UUCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC ACAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU CA|--A-CUA AUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----ca aaauaaaauc uucaaccua- 7561 caua----ua agggauaaca aaauuuuaac ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UU -AA---C-GA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAACAAC- )CUCC-GA|G |u|gau--|< 8221 uaaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- uucc-agac( -uuacua--- )gucaa-aaa --uauuac-- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ----uaau-- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GAAA-)AGAA 9361 A--AA-<--- ---------- ---------- -------->U aaggccc-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---cauaa-> 9541 ---------- ---------- aagc-gccuu -ca------- ---------- -------aac 9601 ---------- --caauagau (gauaua--a ucuca)a-uc -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 ccu(aaacc- ---)aggguu caau~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Pholi 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.Mani.sp 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Manis sp.; . ACCESSION U97340 KEYWORDS . SOURCE Mitochondrion Manis sp. ORGANISM Mitochondrion Manis sp. REFERENCE 1 (bases 1 to 1554) AUTHORS .G., Amrine,H.M. and Stanhope,M.J. Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1554) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97340 BASE COUNT 598 a 294 c 265 g 397 t 9221 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------AAAU 301 |ACU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 CAA(AACA)U UCAccaa--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-cc-uaaA- -GUAU-A(-G GCGA)UAGAA -Auu------ 961 -------<-- ---auauua- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGAGCUAU AGAA-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 Ugaaagauug aaug------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----auu-g u-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaca 2041 --)------- -----CUU-G UACCUU(UC- GCAUA)AUGA |AUU-AGCUA GAaagc-au- 2101 cuggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -agaa>---- --(------) ---------- ---------- -cuuaagcca 2701 gga-auCCCG AA-ACUAG-A CG-AGCUACC UUU-GAG-Ca guu------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uaaag) ---------- 2821 --AACCAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUG- AAGGUAG-AG 2881 GU(A-AAAA) GCC-UAAC-G A-GCCUAGUG AUAGCU-GGU UGUCC--AAA aa-auG-AAU 2941 (-CUAA)GUU CA-AC-UUGA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --auaccuaa 3121 aagc-----a caauaacuaa aau------- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UCAA-GUAU AGUCU--AA- AA-AG(-GUA 3481 CAG)CUUUUU AG-AA----- --guag(uua -aaa)ccu-u uauua-g-ag -ag-UAA--- 3541 ---acaauua aauaccc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUUAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccaa--cuc| c--u-aa|-- --------au c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aUUGG-AC|- UA-AUCUAUc u--------- 4501 ---------- ---------- (auag---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUACAGC-UA 4681 AU|AUGAGUA -ACAA-GA-- ---------- (uauuaa--- ---------- ---------- 4741 ---------- -----)---- ------|-uc u-ccuu-GCA UAA--gcuua u|----auca 4801 gaac----gg ---------- ----(--aua au)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 -caugacaa( aaucaaacua aguauagaaa c----)uugu cuaauaaa-- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uug--|-- 6481 -u-uaauCC- -(AACACA)G G|CAUGC--- ---a(cacca a-----)--- ----AGGAA| 6541 |---AGAU-U U--AAACAAA -UGAA-AGGA ACUCAGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAGUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-augacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- cau)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUC(-U AAAU-)AAGG AC|UA-GUAU GAAUGGCCAA A-CGAGGACU 7261 UU-------- ---------- -------ACU GUCUCUCAUC UGCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AAAGG)CGGG AAU----AAU AGAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UA|--U-CAA CUU--AA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -aauuauuua uauacacuu- 7561 cuaa---)gg aaauaaaaac uaauuuua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-CA -AC---U-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA AAAAAUAAC- )CUCC-GA|G |c|ggu--|< 8221 uuaa------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucu-agac( -uuacaa--- )gucua-aaa ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------auc 8881 c|--guuaAU UGAUC-CA-- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aua uu)--|---- 9001 -UGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--UCCU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-CG(--CA -GC)UGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- ---uauau-- 9301 >--------- ---------- --A-UUU-UU CC--(CAGU- AC(-GAAA)G GACA-)AGAA 9361 A--AA-<--- ---------- ---------- -------->U agggccu-ac cu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uacaa> 9541 ---------- ---------- aagc-gcccu ca-------- ---------- -------aac 9601 ---------- --uaauaaau (gacaua--u ucuua)a-uu -ua-cuuggu u--------- 9661 ---------- ---------| ------(--- )--------- -------|au 9961 ccu(agacac ---)aggacu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Prima 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.hamad 10775 bp RNA RNA 21-DEC-1998 DEFINITION Mitochondrion Papio hamadryas.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Papio hamadryas. ORGANISM Mitochondrion Papio hamadryas. REFERENCE 1 (bases 1 to 1554) AUTHORS Arnason,U., Gullberg,A. and Janke,A. TITLE Molecular timing of primate divergences as estimated by two nonprimate calibration points JOURNAL J. Mol. Evol. 47 (6), 718-727 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y18001 LOCUS PHA18001 16521 bp DNA PRI 21-DEC-1998 DEFINITION Papio hamadryas mitochondrial DNA, complete genome. ACCESSION Y18001 NID g4049475 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; cytochrome oxidase I; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE baboon. ORGANISM Mitochondrion Papio hamadryas Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; Catarrhini; Cercopithecidae; Cercopithecinae; Papio. REFERENCE 1 (bases 1 to 16521) AUTHORS Arnason,U., Gullberg,A. and Janke,A. TITLE Molecular timing of primate divergences as estimated by two nonprimate calibration points JOURNAL J. Mol. Evol. 47 (6), 718-727 (1998) MEDLINE 99065765 REFERENCE 2 (bases 1 to 16521) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (27-AUG-1998) U. Arnason, Dept of Genetics, Division of Evolutionary Molecular Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN COMMENT Users are requested to refer to the citation of this entry as well as the accession number in their publications. BASE COUNT 549 a 393 c 271 g 357 t 9205 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAC 301 |ACU--AGC| UCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AUAC 841 CAA(ACCA)U UAAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-ua-uuAA- -GUAU-A(-G GCGA)UAGAA -Aucuu---- 961 -------<-- ----aacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAU-ACA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 caagaaaacc ac-c------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-AACA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGA |AUU-AGCCA GAaaca-au- 2101 uucacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cugaagcca 2701 aau-ucCCCG AA-ACCAG-A CG-AGCUACC CAA-AAA-CA GCUG------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCGCA-C CC-GUCUAU( GUGGCAA-A) AUAG-UGGGA --AGAUUUC- UGGGUAG-AG 2881 GU(G-ACAA) GCC-UACC-G A-GCCUGGUG AUAGCU-GGU UAUCC--AAG AU-A-G-AAU 2941 (-CUUA)GUU CA-GC-CUUA AGU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuacccaca 3121 gaau-aaccc aaucccaauc ccucuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAU-UGUU AGUCU--AA- AG-AG(-GGA 3481 CAG)CUCUUU AG-AC----- ACUAGG(AAA -AA-)CCU-u acauA-G-AG -AG-UAA--- 3541 --aaaccccc gucacc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-UA|-- -------aau ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cac aUUGG-AU|- UA-AUCUAUC A--------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGCA AUAAUGC-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--cucucuc uc-------- ---------- 4741 ---------- -----)---- ------|ucc c--uacuGCA UAA--gccua a|----acca 4801 aacca---aa ---------- ----(----a cc)c-c|--a cugaua---- ---------- 4861 ---cuuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAAUCC- -(AACACA)G G|CAUGC-u- ----(uuu-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- cUUAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cac)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)AGGG AC|UC-GCAU GAAUGGCAAC A-CGAGGGUU 7261 CA-------- ---------- -------GCU GUCUCUUACU UUUA-AC-CA ----GUGAAA 7321 UU|G|ACCUA UC-CG(U-GA AGAGG)CGGA CAU----GAA ACAAUAAGAC GAGAAG-ACC 7381 CCAUGG-|-A GCUUC--AAU UU|--A-CUA AUG--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gcuaag aa--ucguau aaauc(c--u 7561 cg)gacu-cu aaaacuucua ugcc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAC-A-UU -AA---A-AA UUUUGGUUG( 8161 GGG)CG-GC- C|UCGGAG(- --------CA CAAACAAAC- )CUCC-GA|G |u|gauc-|< 8221 cac------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccaa-ggc( cucacaa--- )gccaa-agc -gaacuaau- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------auu 8881 c|---acaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua au)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UGG G|GAUAACAG |C-GCA-A-U UCUAUUCUAG 9061 AG(U--CCAU )AUCAACAAU --AGAGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU CAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----ccac- 9301 >--------- ---------- ---auuu-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggccc-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuu caccaua--- ---------- ---------- 9601 ---------- -----uaaau (gacuua--g ucuua)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(gagaac a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.gor.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Gorilla gorilla. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gorilla gorilla. ORGANISM Mitochondrion Gorilla gorilla. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D38114 LOCUS GORMTC 16364 bp ds-DNA ORG 08-FEB-1995 DEFINITION Mitochondrion Gorilla gorilla gene. ACCESSION D38114 KEYWORDS 12srRNA; 16srRNA; ATPase subunit 6; ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Leu(CUN); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Gorilla gorilla (organelle Mitochondrion Gorilla gorilla) DNA. ORGANISM Mitochondrion Gorilla gorilla Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (sites) AUTHORS Hixson,J.E. and Brown,W.M. TITLE A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications JOURNAL Mol. Biol. Evol. 3 (1), 1-18 (1986) MEDLINE 88174329 REFERENCE 2 (sites) AUTHORS Foran,D.R., Hixson,J.E. and Brown,W.M. TITLE Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis JOURNAL Nucleic Acids Res. 16 (13), 5841-5861 (1988) MEDLINE 88289338 REFERENCE 3 (sites) AUTHORS Horai,S., Satta,Y., Hayasaka,K., Kondo,R., Inoue,T., Ishida,T., Hayashi,S. and Takahata,N. TITLE Man's place in Hominoidea revealed by mitochondrial DNA genealogy [published erratum appears in J Mol Evol 1993 Jul;37(1):89] JOURNAL J. Mol. Evol. 35 (1), 32-43 (1992) MEDLINE 92389366 REFERENCE 4 (sites) AUTHORS Horai,S., Hayasaka,K., Kondo,R., Tsugane,K. and Takahata,N. TITLE Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs JOURNAL Proc Natl Acad Sci U S A 92, 532-536 (1994) REFERENCE 5 (bases 1 to 16364) AUTHORS Horai,S. and Hayasaka,K. JOURNAL Unpublished (1995) COMMENT Submitted (02-Sep-1994) to DDBJ by: Kenji Hayasaka Depertment of Human Genetics National Institute of Genetics 1111 Yata, Mishimashi Shizuoka 411 Japan Phone: 0559-75-0771 x568 Email: khayasak@ddbj.nig.ac.jp Fax: 0559-75-6040. NCBI gi: 643689 FEATURES Location/Qualifiers source 1..16364 /organism="Mitochondrion Gorilla gorilla" /mitochondrion /sequenced_mol="DNA" tRNA 1..71 /product="tRNA-Phe" rRNA 72..1020 /product="12srRNA" tRNA 1021..1089 /product="tRNA-Val" rRNA 1090..2647 /product="16srRNA" tRNA 2648..2722 /product="tRNA-Leu(UUR)" mat_peptide 2725..3678 /codon=(seq:'ata', aa:Met) /codon=(seq:'tga', aa:Trp) /codon_start=1 /product="NADH dehydrogenase subunit 1 (ND1)" tRNA 3681..3749 /product="tRNA-Ile" tRNA complement(3747..3818) /product="tRNA-Gln" tRNA 3820..3887 /product="tRNA-Met" mat_peptide 3888..4928 /codon_start=1 /product="NADH dehydrogenase subunit 2 (ND2)" tRNA 4930..5997 /product="tRNA-Trp" tRNA complement(5005..5073) /product="tRNA-Ala" tRNA complement(5075..5147) /product="tRNA-Asn" tRNA complement(5179..5244) /product="tRNA-Cys" tRNA complement(5244..5309) /product="tRNA-Tyr" mat_peptide 5325..6863 /codon_start=1 /product="Cytochrome C oxidase subunit 1 (COI)" tRNA complement(6866..6937) /product="tRNA-Ser(UCN)" tRNA 6939..7006 /product="tRNA-Asp" CDS 7007..7690 /note="NCBI gi: 643690" /codon_start=1 /product="Cytochrome C oxidase subunit 2 (COII)" /translation="MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFL TLTTKLTNNNISDAQEIETIWTILPAIILVLIALPSLRILYMTDEINDPSFTIKSIGH QWYWTYEYTDYGGLIFNSYILPPLFLEPGDLRLLDVDNRVVLPVEAPVRIIITSQDVL HSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKI FEIGPVFAL" tRNA 7717..7786 /product="tRNA-Lys" CDS 7788..7994 /note="NCBI gi: 643691" /codon_start=1 /product="ATPase subunit 8 (ATPase8)" /translation="MPQLNTTVWPTIIAPILLTLFLITQLKVLNTNYHLPPLPKTIKI KNFCKPWEPKWTKIYSLHSLPPQS" mat_peptide 7949..8626 /codon_start=1 /product="ATPase subunit 6 (ATPase6)" mat_peptide 8629..9411 /codon_start=1 /product="Cytochrome C oxidase subunit 3 (COIII)" tRNA 9413..9480 /product="tRNA-Gly" mat_peptide 9481..9825 /codon_start=1 /product="NADH dehydrogenase subunit 3 (ND3)" tRNA 9827..9891 /product="tRNA-Arg" CDS 9892..10188 /note="NCBI gi: 643692" /codon_start=1 /product="NADH dehydrogenase subunit 4L (ND4L)" /translation="MPLIYINIILAFTISLLGILVYRSHLISSLLCLEGIILSLFIIA TLITLNTHFLLANIVPITILVFAACEAAVGLALLVSISNTYGLDYVQNLNLLQC" mat_peptide 10182..11558 /codon_start=1 /product="NADH dehydrogenase subunit 4 (ND4)" tRNA 11560..11628 /product="tRNA-His" tRNA 11629..11687 /product="tRNA-Ser(AGY)" tRNA 11688..11758 /product="tRNA-Leu(CUN)" CDS 11759..13570 /note="NCBI gi: 643693" /codon_start=1 /product="NADH dehydrogenase subunit 5 (ND5)" /translation="MTMYATITTLALTSLIPPILTTFINPNKKSSYPHYVKSIVASTF IISLFPTTIFLCLDQEAIISSWHWATTQTIQLSLSFKLDYFSIIFIPVALFVTWSIIE FSLWYINSDPNINQFFKYLLIFLITILILVTANNLFQLFIGWEGVGIISFLLIGWWYA RTDANTAAVQAILYNRIGDIGFILALAWFLLHSNSWDPQQISLLNTNPNLIPLLGFLL AAAGKSAQLGLHPWLPSAIEGPTPVSALLHSSTIVVAGVFLLIRFRHLAENNSLAQTL TLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLIVATIGIGQPHLAFLHICTHAF FKAILFICSGSIIHNLNNEQDIRKIGGLLKAIPLTSTSLAIGSLALIGIPFLTGFYSK DLIIETANISHTNAWALSIILIATSLTSAYSTRIILLTLTGQPRFPTFANINENYSTL LNPIKRLTIGSLFAGFFITNNILPTSVPQMTIPLYLKLTALSITLLGLLTALDLNYLT NKLKIKHPPHTFYFSNILGFYPNITHRTIPYLGLLISQNLPLLLLDLIWLEKLLPKTI SQHQISASITTSTQKGLIKLYFLSFFFPLLLILLLIT" mat_peptide complement(13571..14095) /codon_start=1 /product="NADH dehydrogenase subunit 6 (ND6)" tRNA complement(14096..14164) /product="tRNA-Gln" mat_peptide 14169..15308 /codon_start=1 /product="Cytochrome b" tRNA 15310..15377 /product="tRNA-Thr" tRNA complement(15379..15446) /product="tRNA-Pro" misc_feature 15447..16364 /note="D loop region" BASE COUNT 5059 a 5022 c 2160 g 4123 t ORIGIN BASE COUNT 546 a 398 c 270 g 344 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------AAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAU 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auugu---- 961 -------<-- ----aaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAU-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaaaua uaac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-CACA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-G UACCUU(CU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -ccgaagcua 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUCC- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AC-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuacccaca 3121 gaac------ ccuccaaauc cucccguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU GG-AC----- ACUAGG(AAA -AAA)CCU-u guAAA-G-UG -AG-UAA--- 3541 --aaaauuua auaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--C-UA|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUU A--------- 4501 ---------- ---------- (cccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--acca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccua c|----auca 4801 gacca---aa ---------- ----(--aua uu)a-a|--a cugaca---- ---------- 4861 ---auuaa-- -caa------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC-c- ----(cac-g ------)--- ----AGGAA| 6541 |---AGGU-U G--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uUUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ugc)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|UC-GUAU GAAUGGCUCC A-CGAGGGUU 7261 CA-------- ---------- -------GCU GUCUCUUACU UUUG-AC-CA ----GUGAAA 7321 UU|G|ACCUG CC-CG(U-GA AGAGG)CGGA CAU----AAC AUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UC|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-agcaac ac---uuaau aaacc(c--a 7561 ca)gguc-cu aaacu-acca aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------UA UAAUCUAAC- )CUCC-GA|A |c|aaca-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccaa-gac( uucacca--- )gucaa-agc -gagcuacc- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aca 8881 u|---uuaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ug ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCAACAGU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----ccgu- 9301 >--------- ---------- ---gUUU-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAc<--- ---------- ---------- -------->- gaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuc cccccg---- ---------- ---------- 9601 ---------- -----uaaau (gauacu--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uc-(aagaau a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.gor.2 10775 bp RNA RNA 07-MAY-1996 DEFINITION Mitochondrion Gorilla gorilla.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X93347 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Gorilla gorilla. ORGANISM Mitochondrion Gorilla gorilla. REFERENCE 1 (bases 1 to 16412) AUTHORS Xu,X. and Arnason,U. TITLE A complete sequence of the mitochondrial genome of the Western lowland gorilla JOURNAL Mol. Biol. Evol. 13, 691-698 (1995) STANDARD No information REFERENCE 2 (bases 1 to 16412) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X93347 BASE COUNT 547 a 396 c 269 g 346 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------AAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAU 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auugu---- 961 -------<-- ----aaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAU-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaaaua uaac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-CACA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-G UACCUU(CU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -ccgaagcua 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUCC- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AC-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuacccaca 3121 gaac------ ccuccaaauc cucccguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU GG-AC----- ACUAGG(AAA -AAA)CCU-u guAAA-G-UG -AG-UAA--- 3541 --aaaauuua auaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-UA|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUU A--------- 4501 ---------- ---------- (cccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--acca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccua c|----auca 4801 gacca---aa ---------- ----(--aua uu)a-a|--a cugaca---- ---------- 4861 ---auuaa-- -caa------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC-c- ----(cac-a ------)--- ----AGGAA| 6541 |---AGGU-U G--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uUUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ugc)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|UC-GUAU GAAUGGCUCC A-CGAGGGUU 7261 CA-------- ---------- -------GCU GUCUCUUACU UUUG-AC-CA ----GUGAAA 7321 UU|G|ACCUG CC-CG(U-GA AGAGG)CGGA CAU----AAC AUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UC|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-agcaac ac---uuaau aaacc(c--a 7561 ca)gguc-cu aaacu-auua aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------UA UAAUCUAAC- )CUCC-GA|A |c|aaca-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccaa-gac( uucacca--- )gucaa-agc -gagcuacc- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aca 8881 u|---uuaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ug ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCAACAGU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----ccgu- 9301 >--------- ---------- ---gUUU-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAc<--- ---------- ---------- -------->- gaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuc cccccg---- ---------- ---------- 9601 ---------- -----uaaau (gauacu--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uc-(aagaau a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.sap.1 10775 bp RNA RNA 22-JAN-1980 DEFINITION Homo Sapiens (human) mitochondria 23S. ACCESSION X62996 KEYWORDS No information. SOURCE Homo Sapiens (human) mitochondria 23S. ORGANISM Homo Sapiens (human) mitochondria 23S. REFERENCE 1 (bases 1 to 16412) AUTHORS Anderson,S., Bankier,A.T., Barrell,B.G., de Bruijn,M.H.L., Coulson,A.R., Drouin,J., Eperon,I.C., Nierlich,D.P., Roe,B.A. , Sanger,F., Schreier,P.H., Smith,A.J.H., Staden,R. and Young,I.G. JOURNAL mt.H.sapiens:who:published STANDARD No information REFERENCE 2 (bases 1 to 16412) AUTHORS Attardi,G., Chomyn,A., Doolittle,R.F., Mariottini,P. and Ragan,C.I. TITLE Seven unidentified reading frames of human mitochondrial DNA encode subunits of the respiratory chain NADH dehydrogenase JOURNAL Cold Spring Harb. Symp. Quant. Biol. 51 Pt 1, 103-114 (1986) STANDARD No information REFERENCE 3 AUTHORS Marzuki,S., Noer,S.A., Lertrit,P., Thyagarajan,D., Kapsa, R.M.I., Utthanaphol,P. and Byrne,E. TITLE Normal Variants of the Human Mitochondrial DNA and Translation Products: The Building of a Reference Data Base JOURNAL Hum. Genet. (1991) In press STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: V00710,J01415,V00662,X62996 Phylo:Mitochondria,Animal,Mammal,Homo BASE COUNT 547 a 398 c 270 g 344 t 9216 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------UAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAGC 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auuga---- 961 -------<-- ----aacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCAAU AGAU-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaauua uaac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-UAUA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-A UACCUU(CU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaagg- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agag->---- --(------) ---------- ---------- -ccaaagcua 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUA- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AU-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uugcccaca 3121 gaac------ ccucuaaauc cccuuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU GG-AC----- ACUAGG(AAA -AAA)CCU-u guAGA-G-AG -AG-UAA--- 3541 --aaaauuua acaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-CA|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUC A--------- 4501 ---------- ---------- (cccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--aaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccug c|----guca 4801 gauua---aa ---------- ----(--aca cu)g-a|--a cugaca---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-CAACCC- -(AACACA)G G|CAUGC-u- ----(cau-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-aucacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|CU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 CA-------- ---------- -------GCU GUCUCUUACU UUUA-AC-CA ----GUGAAA 7321 UU|G|ACCUG CC-CG(U-GA AGAGG)CGGG CAU----AAC ACAGCAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UU|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aacagu ac---cuaac aaacc(c--a 7561 ca)gguc-cu aaacu-acca aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA GAACCCAAC- )CUCC-GA|G |c|agua-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcuaa-gac( uucacca--- )gucaa-agc -gaacuacu- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aua 8881 c|---ucaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|ACC---- --|-|<---- ---------- ---------- ---------- ----uucaa- 9301 >--------- ---------- ---aUUC-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuu cccccg---- ---------- ---------- 9601 ---------- -----uaaau (gauauc--a ucuca)a-cu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(aagaac a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.sap.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Homo sapiens. ACCESSION No information KEYWORDS No information. SOURCE Homo sapiens. ORGANISM Homo sapiens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D38112 LOCUS HUMMTA 16559 bp ds-DNA ORG 08-FEB-1995 DEFINITION Mitochondrion Homo sapiens gene. ACCESSION D38112 KEYWORDS 12srRNA; 16srRNA; ATPase subunit 6; ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Homo sapiens (strain African, individual_isolate SB17) placenta DNA. ORGANISM Mitochondrion Homo sapiens Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (sites) AUTHORS Horai,S., Hayasaka,K., Kondo,R., Tsugane,K. and Takahata,N. TITLE Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs JOURNAL Proc Natl Acad Sci U S A 92, 532-536 (1994) REFERENCE 2 (bases 1 to 16559) AUTHORS Horai,S. and Hayasaka,K. JOURNAL Unpublished (1995) COMMENT Submitted (02-Sep-1994) to DDBJ by: Kenji Hayasaka Depertment of Human Genetics National Institute of Genetics 1111 Yata, Mishimashi Shizuoka 411 Japan Phone: 0559-75-0771 x568 Email: khayasak@ddbj.nig.ac.jp Fax: 0559-75-6040. NCBI gi: 644480 FEATURES Location/Qualifiers source 1..16559 /organism="Mitochondrion Homo sapiens" /mitochondrion /sequenced_mol="DNA" /tissue_type="placenta" tRNA 1..71 /product="tRNA-Phe" rRNA 72..1025 /product="12srRNA" tRNA 1026..1094 /product="tRNA-Val" rRNA 1095..2652 /product="16srRNA" tRNA 2653..2727 /product="tRNA-Leu(UUR)" mat_peptide 2730..3683 /codon=(seq:'ata', aa:Met) /codon=(seq:'tga', aa:Trp) /codon_start=1 /product="NADH dehydrogenase subunit 1" tRNA 3686..3754 /product="tRNA-Ile" tRNA complement(3752..3823) /product="tRNA-Gln" tRNA 3825..3892 /product="tRNA-Met" mat_peptide 3893..4933 /codon_start=1 /product="NADH dehydrogenase subunit 2" tRNA 4935..5002 /product="tRNA-Trp" tRNA complement(5010..5078) /product="tRNA-Ala" tRNA complement(5080..5152) /product="tRNA-Asn" tRNA complement(5184..5249) /product="tRNA-Cys" tRNA complement(5249..5314) /product="tRNA-Tyr" mat_peptide 5327..6865 /codon_start=1 /product="Cytochrome C oxidase subunit 1" tRNA complement(6868..6939) /product="tRNA-Ser(UCN)" tRNA 6941..7008 /product="tRNA-Asp" CDS 7009..7692 /note="NCBI gi: 644481" /codon_start=1 /product="Cytochrome C oxidase subunit 2" /translation="MAHAAQVGLQDATSPIIEELITFHDHALIIIFLICFLVLYALFL TLTTKLTNTNISDAQEIETVWTILPAIILVLIALPSLRILYITDEVNDPSLTIKSIGH QWYWTYEYTDYGGLIFNSYILPPLFLEPGDLRLLDVDNRVVLPIEAPIRIIITSQDVL HSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKI FEIGPVFTL" tRNA 7709..7778 /product="tRNA-Lys" CDS 7780..7986 /note="NCBI gi: 644482" /codon_start=1 /product="ATPase subunit 8" /translation="MPQLNTTVWPTIITPILLTLFLITQLKILNTSYHLPPSPKPIKI KNYNKPWEPKWTKICSLHSLPPQS" mat_peptide 7941..8618 /codon_start=1 /product="ATPase subunit 6" mat_peptide 8621..9403 /codon_start=1 /product="Cytochrome C oxidase subunit 3" tRNA 9405..9472 /product="tRNA-Gly" mat_peptide 9473..9817 /codon_start=1 /product="NADH dehydrogenase subunit 3" tRNA 9819..9883 /product="tRNA-Arg" CDS 9884..10180 /note="NCBI gi: 644483" /codon_start=1 /product="NADH dehydrogenase subunit 4L" /translation="MPLIYINIILAFTISLLGILVYRSHLISSLLCLEGIILSLFIIA TLITLNTHSLLANIVPIAILVFAACEAAVGLALLVSISNTYGLDYVHNLNLLQC" mat_peptide 10174..11550 /codon_start=1 /product="NADH dehydrogenase subunit 4" tRNA 11552..11620 /product="tRNA-His" tRNA 11621..11679 /product="tRNA-Ser(AGY)" tRNA 11680..11750 /product="tRNA-Leu(CUN)" CDS 11751..13562 /note="NCBI gi: 644484" /codon_start=1 /product="NADH dehydrogenase subunit 5" /translation="MTMHTTITTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTF IISLFPTTIFMCLDQEVIISNWHWATTQTTQLSLSFKLDYFSIIFIPVALFVTWSIIE FSLWYINSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGWEGVGIISFLLISWWYA RADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQIALLNANPSLPPLLGLLL AAAGKSAQLGLHPWLPSAIEGPTPVSALLHSSTIVVAGVFLLIRFHPLAENSPLIQTL TLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLIVVTIGINQPHLAFLHICTHAF FKAILFMCSGSIIHNLNNEQDIRKIGGLLKTIPLTSTSLTIGSLALAGIPFLTGFYSK DHIIETANISYTNAWALSITLIATSLTSAYSTRIILLTLTGQPRFPTLTNINENNPTL LNPIKRLAAGSLFAGFLITNNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLNYLT NKLKIKSPLCTFYFSNILGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTI SQHQISTSIITSTQKGIIKLYFLSFFFPLILTLLLIT" CDS complement(13563..14087) /note="NCBI gi: 644485" /codon_start=1 /product="NADH dehydrogenase subunit 6" /translation="MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIIL NFGGGYMGLIVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGL VLWVKEYDGVVVVVNFNSVGSWIIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTL FVGVYIVIEIARGN" tRNA complement(14088..14156) /product="tRNA-Glu" mat_peptide 14161..15300 /codon_start=1 /product="Cytochrome b" tRNA 15302..15367 /product="tRNA-Thr" tRNA complement(15370..15437) /product="tRNA-Pro" D-loop 15438..16559 BASE COUNT 5117 a 5169 c 2177 g 4096 t ORIGIN BASE COUNT 546 a 399 c 271 g 342 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------UAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAGC 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auuga---- 961 -------<-- ----aacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCAAU AGAU-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaauua uaac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-UAUA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-A UACCUU(CU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaagg- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agag->---- --(------) ---------- ---------- -ccaaagcua 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUA- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AU-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uugcccaca 3121 gaac------ ccucuaaauc cccuuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU GG-AC----- ACUAGG(AAA -AAA)CCU-u guAGA-G-AG -AG-UAA--- 3541 --aaaauuua acaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-CA|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUC A--------- 4501 ---------- ---------- (cccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--aaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccug c|----guca 4801 gauua---aa ---------- ----(--aca cu)g-a|--a cugaca---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-CAACCC- -(AACACA)G G|CAUGC-u- ----(cau-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-aucacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|CU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 CA-------- ---------- -------GCU GUCUCUUACU UUUA-AC-CA ----GUGAAA 7321 UU|G|ACCUG CC-CG(U-GA AGAGG)CGGG CAU----GAC ACAGCAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UU|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aacaau ac---cuaac aaacc(c--a 7561 ca)gguc-cu aaacu-acca aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA GAACCCAAC- )CUCC-GA|G |c|agua-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccaa-gac( uucacca--- )gucaa-agc -gaacuacc- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aua 8881 c|---ucaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|ACU---- --|-|<---- ---------- ---------- ---------- -----ucaa- 9301 >--------- ---------- ---aUUC-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuu cccccg---- ---------- ---------- 9601 ---------- -----uaaau (gauauc--a ucuca)a-cu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(aagaac a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.sap.3 10775 bp RNA RNA 11-APR-1996 DEFINITION Mitochondrion Homo sapiens.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X93334 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Homo sapiens. ORGANISM Mitochondrion Homo sapiens. REFERENCE 1 (bases 1 to 16570) AUTHORS Arnason,U., Xu,X. and Gullberg,A. TITLE Comparison between the complete mitochondrial DNA sequences of Homo and the common chimpanzee based on non-chimaeric sequences JOURNAL J. Mol. Evol. 42, 145-152 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16570) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X93334 BASE COUNT 546 a 401 c 271 g 341 t 9216 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------UAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAGC 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auuga---- 961 -------<-- ----aacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCAAU AGAU-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaauua uaac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-UAUA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-A UACCUU(CU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaagg- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agag->---- --(------) ---------- ---------- -ccaaagcua 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUA- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AU-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uugcccaca 3121 gaac------ ccucuaaauc cccuuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU GG-AC----- ACUAGG(AAA -AAA)CCU-u guaga-g-AG -AG-UAA--- 3541 --aaaauuua acaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-CA|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUC A--------- 4501 ---------- ---------- (cccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--aaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccug c|----guca 4801 gauua---aa ---------- ----(--aca cu)g-a|--a cugaca---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-CAACCC- -(AACACA)G G|CAUGC-u- ----(cau-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-aucacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|CU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 CA-------- ---------- -------GCU GUCUCUUACU UUUA-AC-CA ----GUGAAA 7321 UU|G|ACCUG CC-CG(U-GA AGAGG)CGGG CAU----GAC ACAGCAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UU|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aacagu ac---cuaac aaacc(c--a 7561 ca)gguc-cu aaacu-acca aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA GAACCCAAC- )CUCC-GA|G |C|agua-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcuaa-gac( uucacca--- )gucaa-agc -gaacuacu- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aua 8881 c|---ucaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|ACC---- --|-|<---- ---------- ---------- ---------- ----uucaa- 9301 >--------- ---------- ---aUUC-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- aaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuu cccccg---- ---------- ---------- 9601 ---------- -----uaaau (gauauc--a ucuca)a-cu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(aagaac a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.panis 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pan paniscus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pan paniscus. ORGANISM Mitochondrion Pan paniscus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D38116 LOCUS CHPMTE 16563 bp ds-DNA ORG 08-FEB-1995 DEFINITION Mitochondrion Pan paniscus gene. ACCESSION D38116 KEYWORDS 12srRNA; 16srRNA; ATPase subunit 6; ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Pan paniscus (organelle Mitochondrion Pan paniscus) DNA. ORGANISM Mitochondrion Pan paniscus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (sites) AUTHORS Hixson,J.E. and Brown,W.M. TITLE A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications JOURNAL Mol. Biol. Evol. 3 (1), 1-18 (1986) MEDLINE 88174329 REFERENCE 2 (sites) AUTHORS Foran,D.R., Hixson,J.E. and Brown,W.M. TITLE Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis JOURNAL Nucleic Acids Res. 16 (13), 5841-5861 (1988) MEDLINE 88289338 REFERENCE 3 (sites) AUTHORS Horai,S., Satta,Y., Hayasaka,K., Kondo,R., Inoue,T., Ishida,T., Hayashi,S. and Takahata,N. TITLE Man's place in Hominoidea revealed by mitochondrial DNA genealogy [published erratum appears in J Mol Evol 1993 Jul;37(1):89] JOURNAL J. Mol. Evol. 35 (1), 32-43 (1992) MEDLINE 92389366 REFERENCE 4 (sites) AUTHORS Horai,S., Hayasaka,K., Kondo,R., Tsugane,K. and Takahata,N. TITLE Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs JOURNAL Proc Natl Acad Sci U S A 92, 532-536 (1994) REFERENCE 5 (bases 1 to 16563) AUTHORS Horai,S. and Hayasaka,K. JOURNAL Unpublished (1995) COMMENT Submitted (02-Sep-1994) to DDBJ by: Kenji Hayasaka Depertment of Human Genetics National Institute of Genetics 1111 Yata, Mishimashi Shizuoka 411 Japan Phone: 0559-75-0771 x568 Email: khayasak@ddbj.nig.ac.jp Fax: 0559-75-6040. NCBI gi: 643684 FEATURES Location/Qualifiers source 1..16563 /organism="Mitochondrion Pan paniscus" /mitochondrion /sequenced_mol="DNA" tRNA 1..71 /product="tRNA-Phe" rRNA 72..1021 /product="12srRNA" tRNA 1022..1090 /product="tRNA-Val" rRNA 1091..2649 /product="16srRNA" tRNA 2650..2724 /product="tRNA-Leu(UUR)" mat_peptide 2727..3680 /codon=(seq:'ata', aa:Met) /codon=(seq:'tga', aa:Trp) /codon_start=1 /product="NADH dehydrogenase subunit 1" tRNA 3683..3751 /product="tRNA-Ile" tRNA complement(3749..3820) /product="tRNA-Gln" tRNA 3822..3889 /product="tRNA-Met" mat_peptide 3890..4930 /codon_start=1 /product="NADH dehydrogenase subunit 2" tRNA 4932..4999 /product="tRNA-Trp" tRNA complement(5007..5075) /product="tRNA-Ala" tRNA complement(5077..5149) /product="tRNA-Asn" tRNA complement(5181..5246) /product="tRNA-Cys" tRNA complement(5246..5311) /product="tRNA-Tyr" mat_peptide 5322..6860 /codon_start=1 /product="Cytochrome C oxidase subunit 1" tRNA complement(6863..6934) /product="tRNA-Ser(UCN)" tRNA 6936..7003 /product="tRNA-Asp" CDS 7004..7687 /note="NCBI gi: 643685" /codon_start=1 /product="Cytochrome C oxidase subunit 2" /translation="MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFL TLTTKLTNTSISDAQEIETVWTILPAIILVLIALPSLRILYITDEVNDPSFTIKSIGH QWYWTYEYTDYGGLIFNSYILPPLFLEPGDLRLLDVDNRVVLPVEAPVRIIITSQDVL HSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFIPIVLELIPLKI FEIGPVFTL" tRNA 7714..7783 /product="tRNA-Lys" CDS 7785..7991 /note="NCBI gi: 643686" /codon_start=1 /product="ATPase subunit 8" /translation="MPQLNTAVWPTTITPILLTLFLITQLKILNSNYHLPPSPKPIKI KNYNKPWEPKWTKICSLHSLPPQS" mat_peptide 7946..8623 /codon_start=1 /product="ATPase subunit 6" mat_peptide 8626..9408 /codon_start=1 /product="Cytochrome C oxidase subunit 3" tRNA 9410..9477 /product="tRNA-Gly" mat_peptide 9478..9822 /codon_start=1 /product="NADH dehydrogenase subunit 3" tRNA 9824..9888 /product="tRNA-Arg" CDS 9889..10185 /note="NCBI gi: 643687" /codon_start=1 /product="NADH dehydrogenase subunit 4L" /translation="MPLIYINIILAFTISLLGILVYRSHLISSLLCLEGIILSLFIIT TLITLNTHSLLANIVPITILVFAACEAAVGLALLVSISNTYGLDYVHNLNLLQC" mat_peptide 10179..11555 /codon_start=1 /product="NADH dehydrogenase subunit 4" tRNA 11557..11625 /product="tRNA-His" tRNA 11626..11684 /product="tRNA-Ser(AGY)" tRNA 11685..11755 /product="tRNA-Leu(CUN)" CDS 11756..13567 /note="NCBI gi: 643688" /codon_start=1 /product="NADH dehydrogenase subunit 5" /translation="MTMYTTITTLTLTPLILPILTTLINPNKKNSYPHYVKSIIASTF IISLFPTTIFICLDQEAIISNWHWATTQTTQLSLSFKLDYFSITFIPVALFVTWAIIE FSLWYINSDPNINQFFKYLLIFLITILILVTANNLFQLFIGWEGVGIISFLLISWWYA RTDANTAAIQAILYNRIGDIGFILALAWFLLHSNSWDPQQIVLLSTNPSLTPLLGFLL AAAGKSAQLGLHPWLPSAIEGPTPVSALLHSSTIVVAGVFLLIRFHPLAENNPLIQTL TLCLGAITTLFAAICALTQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICTHAF FKAILFICSGSIIHNLNNEQDIRKIGGLLKTIPLTSTSLIIGSLALAGIPFLTGFYSK DLIIETANISYINAWALSITLIATSLTSAYSTRIILLTLIGQPRFPTLTNINENNPTL LNPIKRLTIGSLFAGFFITNNILPISTSQMTIPLYLKLTALSVTFLGLLTALDLNYLT NKLKIKSPPYTFYFSNMLGFYPNIIHRSIPYLGLLTSQNLPLLLLDLTWLEKLLPKTI SQYQVSASITTSTQKGIIKLYFLSFLFPLILTLLLII" mat_peptide complement(13568..14092) /codon_start=1 /product="NADH dehydrogenase subunit 6" tRNA complement(14093..14161) /product="tRNA-Glu" mat_peptide 14166..15305 /codon_start=1 /product="Cytochrome b" tRNA 15307..15372 /product="tRNA-Thr" tRNA complement(15375..15442) /product="tRNA-Pro" D-loop 15443..16563 /note="D-loop-region" BASE COUNT 5189 a 5084 c 2104 g 4186 t ORIGIN BASE COUNT 553 a 396 c 264 g 346 t 9216 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auugu---- 961 -------<-- ----aaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAU-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaauua cacc------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-UACA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuaaagcca 2701 aga-ucCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUA- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AU-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaccuaca 3121 gaac------ ccucuaaauc ccccuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU AG-AC----- ACUAGG(AAA -AAA)CCU-u auGAA-G-AG -AG-UAA--- 3541 --aaaauuua augccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- CGAA--CUC| C--U-UA|-- -------cgc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------uca aUUGG-AC|- CA-AUCUAUU A--------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAG CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--aaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccua c|----uaca 4801 gacca---aa ---------- ----(--aua uu)a-a|--a cugaca---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC-a- ----(cac-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 UA-------- ---------- -------GCU GUCUCUUACU UUCA-AC-CA ----GUGAAA 7321 UU|G|ACCUA CC-CG(U-GA AGAGG)CGGG CAU----AAC AUAGCAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UC|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aacaau ac---uuaac aaacc(c--a 7561 ca)gguc-cu aaacu-auua aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA CAACCCAAC- )CUCC-GA|G |c|aaca-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcuaa-gac( cucacca--- )gucaa-agc -gaauuauu- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aca 8881 u|---ccaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uu ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCCAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----cuaa- 9301 >--------- ---------- ---aUUU-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- ggggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuc ccccaa---- ---------- ---------- 9601 ---------- -----uaaau (gauauu--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uc-(aagaac a--)-gaguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.tro.1 10775 bp RNA RNA 11-APR-1996 DEFINITION Mitochondrion Pan troglodytes.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X93335 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Pan troglodytes. ORGANISM Mitochondrion Pan troglodytes. REFERENCE 1 (bases 1 to 16561) AUTHORS Arnason,U., Xu,X. and Gullberg,A. TITLE Comparison between the complete mitochondrial DNA sequences of Homo and the common chimpanzee based on non-chimaeric sequences JOURNAL J. Mol. Evol. 42, 145-152 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16561) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X93335 NCBI gi: 1262390 BASE COUNT 555 a 396 c 261 g 346 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auugu---- 961 -------<-- ----aaac-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAC-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaauua uacc------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-UACA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -ccaaagcua 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUA- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AU-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaccuaca 3121 gaac------ ccucuaaauc cccuuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU AG-AC----- ACUAGG(AAA -AAA)CCU-u guAAA-G-AG -AG-UAA--- 3541 --aaaauuua acaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- CGAA--CUC| C--U-UA|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUU A--------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--aaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccua c|----auca 4801 gacca---aa ---------- ----(--aua uu)a-a|--a cugaca---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC-c- ----(cac-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 UA-------- ---------- -------GCU GUCUCUUACU UUCA-AC-CA ----GUGAAA 7321 UU|G|ACCUA CC-CG(U-GA AGAGG)CGGG CAU----AAC AUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UC|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aacaau ac---uuaac aaacc(u--a 7561 ca)gguc-cu aaacu-auua aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA CAACCCAAC- )CUCC-GA|G |c|aaua-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcuaa-gac( cucacca--- )gucaa-agc -gaauuacu- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aca 8881 u|---ccaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ug ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCCAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----cuaa- 9301 >--------- ---------- ---aUUU-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- gaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuu ccccaa---- ---------- ---------- 9601 ---------- -----uaaau (gauauu--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uc-(aagaac a--)-gaguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.tro.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Pan troglodytes. ACCESSION No information KEYWORDS No information. SOURCE Pan troglodytes. ORGANISM Pan troglodytes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D38113 LOCUS CHPMTB 16554 bp ds-DNA ORG 08-FEB-1995 DEFINITION Mitochondrion Pan troglodytes gene. ACCESSION D38113 KEYWORDS 12srRNA; 16srRNA; ATPase subunit 6; ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Pan troglodytes (organelle Mitochondrion Pan troglodytes) DNA. ORGANISM Mitochondrion Pan troglodytes Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (sites) AUTHORS Hixson,J.E. and Brown,W.M. TITLE A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications JOURNAL Mol. Biol. Evol. 3 (1), 1-18 (1986) MEDLINE 88174329 REFERENCE 2 (sites) AUTHORS Foran,D.R., Hixson,J.E. and Brown,W.M. TITLE Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis JOURNAL Nucleic Acids Res. 16 (13), 5841-5861 (1988) MEDLINE 88289338 REFERENCE 3 (sites) AUTHORS Horai,S., Satta,Y., Hayasaka,K., Kondo,R., Inoue,T., Ishida,T., Hayashi,S. and Takahata,N. TITLE Man's place in Hominoidea revealed by mitochondrial DNA genealogy [published erratum appears in J Mol Evol 1993 Jul;37(1):89] JOURNAL J. Mol. Evol. 35 (1), 32-43 (1992) MEDLINE 92389366 REFERENCE 4 (sites) AUTHORS Horai,S., Hayasaka,K., Kondo,R., Tsugane,K. and Takahata,N. TITLE Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs JOURNAL Proc Natl Acad Sci U S A 92, 532-536 (1994) REFERENCE 5 (bases 1 to 16554) AUTHORS Horai,S. and Hayasaka,K. JOURNAL Unpublished (1995) COMMENT Submitted (02-Sep-1994) to DDBJ by: Kenji Hayasaka Depertment of Human Genetics National Institute of Genetics 1111 Yata, Mishimashi Shizuoka 411 Japan Phone: 0559-75-0771 x568 Email: khayasak@ddbj.nig.ac.jp Fax: 0559-75-6040. NCBI gi: 643679 FEATURES Location/Qualifiers source 1..16554 /organism="Mitochondrion Pan troglodytes" /mitochondrion /sequenced_mol="DNA" tRNA 1..71 /product="tRNA-Phe" rRNA 72..1020 /product="12srRNA" tRNA 1021..1089 /product="tRNA-Val" rRNA 1090..2647 /product="16srRNA" tRNA 2648..2722 /product="tRNA-Leu(UUR)" mat_peptide 2725..3678 /codon=(seq:'ata', aa:Met) /codon=(seq:'tga', aa:Trp) /codon_start=1 /product="NADH dehydrogenase subunit 1" tRNA 3681..3749 /product="tRNA-Ile" tRNA complement(3747..3818) /product="tRNA-Gln" tRNA 3820..3887 /product="tRNA-Met" mat_peptide 3888..4928 /codon_start=1 /product="NADH dehydrogenase subunit 2" tRNA 4930..4997 /product="tRNA-Trp" tRNA complement(5005..5073) /product="tRNA-Ala" tRNA complement(5075..5147) /product="tRNA-Asn" tRNA complement(5179..5244) /product="tRNA-Cys" tRNA complement(5244..5309) /product="tRNA-Tyr" mat_peptide 5321..6859 /codon_start=1 /product="Cytochrome C oxidase subunit 1" tRNA complement(6862..6933) /product="tRNA-Ser(UCN)" tRNA 6935..7002 /product="tRNA-Asp" CDS 7003..7686 /note="NCBI gi: 643680" /codon_start=1 /transl_except=(pos:7195..7197,aa:Trp) /transl_except=(pos:7312..7314,aa:Trp) /transl_except=(pos:7318..7320,aa:Trp) /transl_except=(pos:7489..7491,aa:Trp) /product="Cytochrome C oxidase subunit 2" /translation="MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFL TLTTKLTNTSISDAQEIETVWTILPAIILVLIALPSLRILYITDEVNDPSFTIKSIGH QWYWTYEYTDYGGLIFNSYILPPLFLEPGDLRLLDVDNRVVLPVEAPVRIIITSQDVL HSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFIPIVLELIPLKI FEIGPVFTL" tRNA 7713..7782 /product="tRNA-Lys" CDS 7784..7990 /note="NCBI gi: 643681" /codon_start=1 /product="ATPase subunit 8" /translation="MPQLNTAVWPTIITPILLTLFLVTQLKILNSNYHLPPSPKPIKI KNYNKPWEPKWTKIYSLHSLPPQS" mat_peptide 7945..8622 /codon_start=1 /product="ATPase subunit 6" mat_peptide 8625..9407 /codon_start=1 /product="Cytochrome C oxidase subunit 3" tRNA 9409..9476 /product="tRNA-Gly" mat_peptide 9477..9821 /codon_start=1 /product="NADH dehydrogenase subunit 3" tRNA 9823..9887 /product="tRNA-Arg" CDS 9888..10184 /note="NCBI gi: 643682" /codon_start=1 /product="NADH dehydrogenase subunit 4L" /translation="MPLIYINIILAFTISLLGILVYRSHLISSLLCLEGIILSLFIIA TLITLNTHSLLANIVPITILVFAACEAAVGLALLVSISNTYGLDYVHNLNLLQC" mat_peptide 10178..11554 /codon_start=1 /product="NADH dehydrogenase subunit 4" tRNA 11556..11624 /product="tRNA-His" tRNA 11625..11683 /product="tRNA-Ser(AGY)" tRNA 11684..11754 /product="tRNA-Leu(CUN)" CDS 11755..13566 /partial /note="NCBI gi: 643683" /codon_start=1 /product="NADH dehydrogenase subunit 5" /translation="ITMYATITTLALTSLIPPILGALINPNKKNSYPHYVKSIIASTF IISLFPTTIFICLDQETIISNWHWATTQTTQLSLSFKLDYFSITFIPVALFVTWSIIE FSLWYIDSDPNINQFFKYLLIFLITILILVTANNLFQLFIGWEGVGIISFLLISWWYA RTDANTAAIQAILYNRIGDIGFVLALAWFLLHSNSWDPQQIILLSTNTDLTPLLGFLL AAAGKSAQLGLHPWLPSAIEGPTPVSALLHSSTIVVAGIFLLIRFYPLAENNPLIQTL TLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICTHAF FKAILFICSGSIIHNLNNEQDIRKIGGLLKTIPLTSTSLTIGSLALAGIPFLTGFYSK DLIIETANISYTNAWALSITLIATSLTSAYSTRIILLTLTGQPRFPTLTNINENNPTL LNPIKRLTIGSLFAGFLITNNILPISTPQVTIPLYLKLTALGVTSLGLLTALDLNYLT SKLKIKSPLYTFHFSNILGFYPNIIHRSIPYLGLLTSQNLPLLLLDLTWLEKLLPKTI SQYQISASITTSTQKGMIKLYFLSFFFPLILTLLLIT" mat_peptide complement(13567..14091) /codon_start=1 /product="NADH dehydrogenase subunit 6" tRNA complement(14092..14160) /product="tRNA-Glu" mat_peptide 14165..15304 /codon_start=1 /product="Cytochrome b" tRNA 15306..15371 /product="tRNA-Thr" tRNA complement(15374..15441) /product="tRNA-Pro" D-loop 15442..16554 /note="D-loop-region" BASE COUNT 5154 a 5099 c 2133 g 4168 t ORIGIN BASE COUNT 554 a 397 c 262 g 345 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAA 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 CAA(ACCA)U UUAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-uaAA- -GUAU-A(-G GCGA)UAGAA -Auugu---- 961 -------<-- ----aaac-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAC-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaauua uacc------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-UACA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaaua-ac- 2101 uuugcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -ccaaagcua 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUA- UAGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AU-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaccuaca 3121 gaac------ ccucuaaauc cccuuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAC-UGUU AGUCC--AA- AG-AG(-GAA 3481 CAG)CUCUUU AG-AC----- ACUAGG(AAA -AAA)CCU-u guAAA-G-AG -AG-UAA--- 3541 --aaaauuua acaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- CGAA--CUC| C--U-UA|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUU A--------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA CUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--aaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuccGCA UAA--gccua c|----auca 4801 gacca---aa ---------- ----(--aua uu)a-a|--a cugaca---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC-c- ----(cac-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 UA-------- ---------- -------GCU GUCUCUUACU UUCA-AC-CA ----GUGAAA 7321 UU|G|ACCUA CC-CG(U-GA AGAGG)CGGG CAU----AAC AUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UC|--A-UUA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aacaau ac---uuaac aaacc(u--a 7561 ca)gguc-cu aaacu-auua aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UU -AA---A-AA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA CAACCCAAC- )CUCC-GA|G |c|aaua-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcuaa-gac( cucacca--- )gucaa-agc -gaauuacu- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aca 8881 u|---ccaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ug ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCCAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----cuaa- 9301 >--------- ---------- ---aUUU-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- gaggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuu ccccaa---- ---------- ---------- 9601 ---------- -----uaaau (gauauu--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uc-(aagaac a--)-gaguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.pyg.a 10775 bp RNA RNA 18-DEC-1996 DEFINITION Mitochondrion Pongo pygmaeus abelii.; 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X97707 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Pongo pygmaeus abelii. ORGANISM Mitochondrion Pongo pygmaeus abelii. REFERENCE 1 (bases 1 to 16499) AUTHORS Xu,X. and Arnason,U. TITLE The mitochondrial DNA molecule of Sumatran orangutan and a molecular proposal for two (Bornean and Sumatran) species of orangutan JOURNAL J. Mol. Evol. 43, 431-437 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16499) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (09-MAY-1996) U. Arnason, University of Lund, Department of Genetics, Division of Evolutionary Molecular Systematics, Solvegatan 29, S-223 63 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X97707 BASE COUNT 553 a 411 c 271 g 325 t 9215 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------UAAC 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 CAA(ACCA)U UCAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-caAA- -GUAU-A(-G GCGA)UAGAA -Auuac---- 961 -------<-- ----aauc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAC-ACA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaaaaaca caac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-CAUA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaaca-ac- 2101 uuugcaagg- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agag->---- --(------) ---------- ---------- -ccaaagcca 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC CAU-AAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUA- UGGGUAG-AG 2881 GC(G-ACAA) ACC-UACC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AC-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuacuuaca 3121 gaac------ cc-cu-aauc cccucguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAU-UGCU AGUCU--AA- AG-AG(-GAA 3481 CAG)CUCUUU AG-AC----- ACUAGG(AAA -AAA)CCU-u aaAAA-G-AG -AG-UAA--- 3541 --aaaacaca acaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-G GGC(CCAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCG-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-UA|-- -------cuc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------ccc aUUGG-AC|- UA-AUCUAUU G--------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA ACAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (--gaua--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccccGCA UAA--gucua c|----guca 4801 gaccg---aa ---------- ----(--aca uc)a-c|--a cugaca---- ---------- 4861 ---auuaa-- -cgg------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ccg--|-- 6481 -u-UAAUCC- -(AACACA)G G|CAUGC-c- ----(uau-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUCACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uac)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)GGGG AC|UU-GUAU GAAUGGCUUC A-CGAGGGUU 7261 CG-------- ---------- -------ACU GUCUCUUACU UUUA-AC-CA ----GUGAAA 7321 UU|G|ACCUG CC-CG(U-GA AGAGG)CGGG CAU----AAC AUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UU|--A-CCA GUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aauaac au---acaac aagcc(c--a 7561 ca)ggcc-cu aaauc-acca aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-CU -GA---A-GA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA CAACCCAAC- )CUCC-GA|G |a|aaca-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- guuaa-gac( cucacaa--- )gucaa-aac -gaacuucc- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aca 8881 c|---acaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ca ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUCUAG 9061 AG(U--CCAU )AUCAACAAC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----ucac- 9301 >--------- ---------- ---aUUU-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- ggggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------u aagc-gccuu ucccaaa--- ---------- ---------- 9601 ---------- -----caaau (gauauc--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(aagaaa a--)-gggcu au~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.pygma 10775 bp RNA RNA 11-JAN-191 DEFINITION Pongo pygmaeus. ACCESSION No information KEYWORDS No information. SOURCE Pongo pygmaeus. ORGANISM Pongo pygmaeus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D38115 LOCUS ORAMTD 16389 bp ds-DNA ORG 08-FEB-1995 DEFINITION Mitochondrion Pongo pygmaeus gene. ACCESSION D38115 KEYWORDS 12srRNA; 16srRNA; ATPase subunit 6; ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Pongo pygmaeus (organelle Mitochondrion Pongo pygmaeus) DNA. ORGANISM Mitochondrion Pongo pygmaeus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (sites) AUTHORS Horai,S., Satta,Y., Hayasaka,K., Kondo,R., Inoue,T., Ishida,T., Hayashi,S. and Takahata,N. TITLE Man's place in Hominoidea revealed by mitochondrial DNA genealogy [published erratum appears in J Mol Evol 1993 Jul;37(1):89] JOURNAL J. Mol. Evol. 35 (1), 32-43 (1992) MEDLINE 92389366 REFERENCE 2 (sites) AUTHORS Horai,S., Hayasaka,K., Kondo,R., Tsugane,K. and Takahata,N. TITLE Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs JOURNAL Proc Natl Acad Sci U S A 92, 532-536 (1994) REFERENCE 3 (bases 1 to 16389) AUTHORS Horai,S. and Hayasaka,K. JOURNAL Unpublished (1995) COMMENT Submitted (02-Sep-1994) to DDBJ by: Kenji Hayasaka Depertment of Human Genetics National Institute of Genetics 1111 Yata, Mishimashi Shizuoka 411 Japan Phone: 0559-75-0771 x568 Email: khayasak@ddbj.nig.ac.jp Fax: 0559-75-6040. NCBI gi: 644494 FEATURES Location/Qualifiers source 1..16389 /organism="Mitochondrion Pongo pygmaeus" /mitochondrion /sequenced_mol="DNA" tRNA 1..71 /product="tRNA-Phe" rRNA 72..1024 /product="12srRNA" tRNA 1025..1093 /product="tRNA-Val" rRNA 1094..2651 /product="16srRNA" tRNA 2652..2726 /product="tRNA-Leu(UUR)" mat_peptide 2729..3682 /codon=(seq:'ata', aa:Met) /codon=(seq:'tga', aa:Trp) /codon_start=1 /product="NADH dehydrogenase subunit 1" tRNA 3685..3753 /product="tRNA-Ile" tRNA complement(3751..3822) /product="tRNA-Gln" tRNA 3824..3891 /product="tRNA-Met" mat_peptide 3892..4932 /codon_start=1 /product="NADH dehydrogenase subunit 2" tRNA 4934..4999 /product="tRNA-Trp" tRNA complement(5006..5074) /product="tRNA-Ala" tRNA complement(5076..5148) /product="tRNA-Asn" tRNA complement(5181..5247) /product="tRNA-Cys" tRNA complement(5247..5313) /product="tRNA-Tyr" mat_peptide 5332..6870 /codon_start=1 /product="Cytochrome C oxidase subunit 1" tRNA complement(6873..6944) /product="tRNA-Ser(UCN)" tRNA 6946..7013 /product="tRNA-Asp" CDS 7014..7697 /note="NCBI gi: 644495" /codon_start=1 /product="Cytochrome C oxidase subunit 2" /translation="MAHAAQVGLQDATSPIIEELVIFHDHALIIIFLICFLVLYALFL TLTTKLTNTNISDAQEIETIWTILPAIILILIALPSLRILYLTDEINDPSFTIKSIGH QWYWTYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPVEAPVRIIITSQDVL HSWTVPSLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKI FEIGPVFAL" tRNA 7740..7809 /product="tRNA-Lys" CDS 7811..8017 /note="NCBI gi: 644496" /codon_start=1 /product="ATPase subunit 8" /translation="MPQLNTTTWLTVITPTLLALFLITQLKLLNSHLHPPTPPKFTKT KPHAKPWELKWTKIYSPHSLPPQS" mat_peptide 7972..8649 /codon_start=1 /product="ATPase subunit 6" mat_peptide 8652..9434 /codon_start=1 /product="Cytochrome C oxidase subunit 3" tRNA 9436..9503 /product="tRNA-Gly" mat_peptide 9504..9848 /codon_start=1 /product="NADH dehydrogenase subunit 3" tRNA 9850..9914 /product="tRNA-Arg" CDS 9915..10211 /note="NCBI gi: 644497" /codon_start=1 /product="NADH dehydrogenase subunit 4L" /translation="MPLIYINITLAFTISLLGMLVYRSHLISSLLCLEGIMLSLFIII TLITLNTHSLLANIIPITILVFAACEAAVGLALLASISNTYGLDYVNNLNLLQC" mat_peptide 10205..11581 /codon_start=1 /product="NADH dehydrogenase subunit 4" tRNA 11583..11651 /product="tRNA-His" tRNA 11652..11709 /product="tRNA-Ser(AGY)" tRNA 11710..11780 /product="tRNA-Leu(CUN)" CDS 11781..13592 /note="NCBI gi: 644498" /codon_start=1 /product="NADH dehydrogenase subunit 5" /translation="MAMFTTITALTLTSLIPPITATLINPNKKNSYPHYVKTAIASAF TISLIPTTIFICLGQETIITNWCWTTTQTLQLSLSFKLDYFSITFLPVALFVTWSIIE FSLWYIASDPNINQFFKYLLIFLITIIILITANNLLQLFIGWEGVGIISFLLISWWYA RTDANTAAIQAILYNRIGDIGFILTLAWFLLHSNSWELQQVFLLNNNPNLLPLLGLLL AAAGKSAQLGLHPWLPSAIEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNPPIQTL ALCLGAITTLFAAICALTQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICTHAF FKALLFMCSGSIIHNLNNEQDIRKIGGLLKTIPLTSTSLTISSLALAGIPFLSGFYSK DLIIETASISYTNAWALSITLIATSLTSAYSTRIILHTLTGKPLLPTPISINENNPTL LNPIKRLMTGSLFTGFLITSNIPPTSLPQTTTPLYLKLAALTATLLGLLVALDLNYLA NKLKVKTPPPAFYFSTILGFYPNIIHRIIPHLSLLISQNLSLLLLDLTWLEKLIPKAI SQHQTSASTTISTQKGIIKLYFLSFLIPLLLTLLIIS" mat_peptide complement(13593..14117) /codon_start=1 /product="NADH dehydrogenase subunit 6" tRNA complement(14118..14186) /product="tRNA-Glu" mat_peptide 14191..15330 /codon_start=1 /product="Cytochrome b" tRNA 15332..15397 /product="tRNA-Thr" tRNA complement(15403..15472) /product="tRNA-Pro" D-loop 15473..16389 /note="D-loop-region" BASE COUNT 5007 a 5317 c 2168 g 3897 t ORIGIN BASE COUNT 549 a 402 c 277 g 330 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------UAAU 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 CAA(ACCA)U UCAccca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-ag-caAA- -GUAU-A(-G GCGA)UAGAA -Auuau---- 961 -------<-- ----aauc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAU-GCA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaaacg aaac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-CACA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CCU-G UACCUU(UC- GCAUA)AUGA |AUU-AACUA GAaaca-ac- 2101 uuugcaagg- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -ccgaagcca 2701 aga-ccCCCG AA-ACCAG-A CG-AGCUACC CAU-AAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCGCA-C CC-GUCUAU( GUGGCAA-A) AUAG-UGGGA --AGAUUUA- UGGGAUG-AG 2881 GC(G-ACAA) ACC-AUCC-G A-GCCUGGUG AUAGCU-GGU UGUCC--AAG AC-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuacuuaca 3121 gagu------ cc-cu-aauc cccucguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGCU AGUCU--AA- AG-AG(-GAA 3481 CAG)CUCUUU AG-AC----- ACUAGG(AAA -AAA)CCU-u aaAAA-G-AG -AG-UAA--- 3541 --aaaacaca gcaccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-G GGC(CCAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCG-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-UA|-- -------cuc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cca aUUGG-AC|- CA-AUCUAUU G--------- 4501 ---------- ---------- (cccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA ACAAUGU-UA 4681 GU|AUAAGUA -ACGU-GAA- ---------- (--aaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccucuGCA UAA--gccua c|----guca 4801 gacca---aa ---------- ----(--aca uc)a-c|--a cuggca---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAAUCC- -(AACACA)G G|CAUGC-c- ----(cau-c ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uCUCACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ugu)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)GAGG AC|UU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 CG-------- ---------- -------ACU GUCUCUUACU UUUA-AC-CA ----GUGAAA 7321 UU|G|ACCUG CC-CG(U-GA AGAGG)CGGG CAU----AAC AUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU CU|--A-CCA GUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aauaac au---auaac aagcc(c--a 7561 ca)ggcc-cu aauuc-acca aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-CU -GA---A-GA UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------UA UAACCCAAC- )CUCC-GA|G |a|aaca-|< 8221 cau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- guuaa-gac( uucacaa--- )gucaa-aac -aaacuucc- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aca 8881 c|---acaAU UGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ac)--|---- 9001 UUGACCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUCUAG 9061 AG(U--CCAU )AUCAACGAC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----ucac- 9301 >--------- ---------- ---aUUU-CU CC--(CUGU- AC(-GAAA)G AACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- ggggccu-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----caca> 9541 ---------- ---------- aagc-gccuu ucccaaa--- ---------- ---------- 9601 ---------- -----caaau (gauauc--a ucuca)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(aagaaa a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.lar 10775 bp RNA RNA 23-OCT-1996 DEFINITION Mitochondrion Hylobates lar.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene. ACCESSION X99256 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene. SOURCE Mitochondrion Hylobates lar. ORGANISM Mitochondrion Hylobates lar. REFERENCE 1 (bases 1 to 16472) AUTHORS Arnason,U., Gullberg,A. and Xu,X. TITLE A complete mitochondrial DNA molecule of the white-handed gibbon, Hylobates lar, and comparison among individual mitochondrial genes of all hominoid genera JOURNAL Hereditas 124, 185-189 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16472) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (09-JUL-1996) U. Arnason, University of Lund, Department of Genetics, Division of Evolutionary Molecular Systematics, Solvegatan 29, 22362 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X99256 BASE COUNT 542 a 408 c 277 g 331 t 9217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAC 301 |CCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----CAAC 841 CAA(ACCA)U UUAcccg--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-ua-caAA- -GUAU-A(-G GCGA)UAGAA -Auuac---- 961 -------<-- ---caacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCAAU AGAU-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaa-ca cgac------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auaaacc 2041 --)------- -----CCU-G UACCUU(CU- GCAUA)AUGA |AUU-AACUA GAcaca-ac- 2101 uuagcaagg- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- aggc->---- --(------) ---------- ---------- -ccaaagcua 2701 aga-gcCCCG AA-ACCAG-A CG-AGCUACC UAA-GAA-CC GCUG------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaa-) ---------- 2821 -GAGCACA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUCA- UAGGUAG-AG 2881 GU(G-ACAA) GCC-UACC-G A-GCCUGGCG AUAGCU-GGU UGUCC--AAG AC-A-G-AAU 2941 (-CUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -cuacccgua 3121 gaac------ cc-cuaaauc uucuuguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-UGUU AGUCU--AA- AG-AG(-GAA 3481 CAG)CUCUUU AG-AC----- UCUAGG(AAA -AAA)CCU-u auAAA-G-AG -AG-UAA--- 3541 --aaagugua aacccc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- UGAA--CUC| C--U-UC|-- -------cac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cac aUUGG-AC|- CA-AUCUAUC A--------- 4501 ---------- ---------- (uuuu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 GU|AUAAGUA -ACAU-GAA- ---------- (-uaaca--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccccGCA UAA--accua u|----auca 4801 gacca---aa ---------- ----(--aaa cu)u-c|--g cugaca---- ---------- 4861 ---guuaa-- -cag------ ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-CAACCC- -(AACAUA)G G|CAUGC-c- ----(cac-a ------)--- ----AGGAA| 6541 |---AGGU-U A--AAAAAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- cACUACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacca- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cau)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAAU-)GGGG AC|UU-GUAU GAAUGGCUCC A-CGAGGGUU 7261 CA-------- ---------- -------GCU GUCUCUUACU UUCA-AC-CA ----GUGAAA 7321 UU|G|ACCUG UC-CG(U-GA AGAGG)CGGA CAU----AAC CUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGU CU|--A-UCA AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aacaac au---ucaau aaacc(a--a 7561 ca)gguc-au aaauu-acca aacc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UC -GA---A-GA CUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------CA UAGACUAAC- )CUCC-GA|G |c|agua-|< 8221 uau------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gcuaa-gac( cacacca--- )gucaa-aac -gaaacucc- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------aug 8881 u|---gcaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCAU )AUCAACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CGAU GG-UG(--CA -GC)CGCUAU CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----cuau- 9301 >--------- ---------- ---aUUU-CU CC--(CUGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- agggccc-ac uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----cgca> 9541 ---------- ---------- aagc-gcccu cccuccu--- ---------- ---------- 9601 ---------- -----uggau (gauauu--a ucuca)a-uc -c-------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 uc-(aagaac a--)-gagcc u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Probo 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.L.afr.1 10775 bp RNA RNA 02-APR-1998 DEFINITION Mitochondrion Loxodonta africana.; complete genome. ACCESSION AJ224821 KEYWORDS complete genome. SOURCE Mitochondrion Loxodonta africana. ORGANISM Mitochondrion Loxodonta africana. REFERENCE 1 (bases 1 to 16866) AUTHORS Hauf,J., Chalwatzis,N., Joger,U. and Zimmermann,F.K. TITLE The complete mitochondrial sequence of the African Elephant (Loxodonta africana) and its implication on the assessment of the systematic position of the Proboscidea JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16866) AUTHORS Hauf,J. TITLE Direct Submission JOURNAL Submitted (26-FEB-1998) Hauf J., Institut fuer Mikrobiologie und Genetik, TU Darmstadt, Schnittspahnstr. 10, D-64287 Darmstadt, GERMANY STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ224821 BASE COUNT 582 a 314 c 268 g 401 t 9210 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ C--------- ------UAAA 301 |UCU--AGC| CC-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------ua ccaaccc--- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- uacacucaau ucucauauua uauu------ 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- |-----aaau 841 cAA(AACA)U UCA------- ---------- ---------- ---------- -----cuua- 901 ------(--- --)------- |ccA-AAAA- -GUAU-A(-G GAGA)UAGAA -AUUUc---- 961 -------<-- ----acua-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCAAU AGAG-AU--- ---AGUACC( -GCAA-)GGG ---AAU-GA- 1681 UGaaa--g-a ua-g------ ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -uuuaaua-G U-AAUA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CCU-U UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaaaa-uc- 2101 ugacaaag-- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuauagcca 2701 gaa-acCCCG AA-AUCAG-A CG-AGCUAUC UGA-UAG-UA AUCC------ ---------- 2761 -(-------- ---------- ---------- ---------- -----cca-) ---------- 2821 -GGAUCAA-U UC-AUCUAU( GUGGCAA-A) AUAG-UGAAG --AAACUUA- CAGAUAG-AG 2881 GU(G-AAAU) ACC-AAUC-G A-GCCUGAUG AUAGCU-GGU UGUCC--AGA AA-UAG-AAU 2941 (-UUUA)GUU CU-AC-CUAA AACU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---uaccaca 3121 aaaa------ caaaauaauu ccaaugu--- ---------- ---------- ---------- 3181 ----aa---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UUAG-AGAU AUUCA--AA- AG-GG(-GUA 3481 CAG)CUCUUU UG-AC----- -CAAGG(ACA -CAA)CCU-u gauua-g-cg -ag-uaa--- 3541 --auucacca uuaauu---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- uc>AUAGU-U GGC(UUAGAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 GU|AUAAGUA -AUAA-GAA- ---------- (--guau--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccu-GCA UAA--gcuua u|----auca 4801 g-guc---gg ---------- ----(---au gc)c-c|--g cugaua---- ---------- 4861 ---guuaa-- -ca------- -------a-- ccgaau---- ---------- ---------- 4921 -aau-uagau acaaaaauag aac--cu--u ----uauuau accaa----- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- --uug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC--- ----(-uu-a ------)--- ----AGGGA| 6541 |--AAGAU-U A--AAAGAAG -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acaaACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCGAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUC-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ca agc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCCU(-U AAUU-)AGGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUUCC UCUA-AU-CA ----AUGAAA 7321 UU|G|ACCUU CU-CG(U-GA AGAGG)CGAG AAU----AAA CAUAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--aau uA|--a-cua auu--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-auugcu ag---ccuau aaauc(u-au 7561 aa)ga-uaca acuaa-acag cauga----- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-a-uu -aa---c-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA GAAAAAAUC- )CUCC-GA|a |c|gaua-|< 8221 uuaua----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- auuua-gac( ucuacaa--- )gucaa-aau -uuacuaau- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------c 8881 g|---cuuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------u- ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUACUCUAG 9061 AG(U--CCCU )AUCGACAGC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- -----guuu- 9301 >--------- ---------- --a-uuu-au uc--(CAGU- AC(-GAAA)G GACA-)gaaa 9361 a--aa---| ------(--- )--------- -------|aa 9961 ucc(aagaac a--)ggauuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.afr.2 10775 bp RNA RNA 16-JAN-1998 DEFINITION Mitochondrion Loxodonta africana.; . ACCESSION AF039436 KEYWORDS . SOURCE Mitochondrion Loxodonta africana. ORGANISM Mitochondrion Loxodonta africana. REFERENCE 1 (bases 1 to 1476) AUTHORS .W. and Springer,M.S. Stanhope,M.J., Madsen,O., Waddell,V.G., Cleven,G.C., de Jong,W TITLE endemic African mammals Highly congruent support for a diverse superordinal clade of JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1476) AUTHORS Stanhope,M.J., Madsen,O., Waddell,V.G., Cleven,G.C., de Jong,W.W. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (19-DEC-1997) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF039436 BASE COUNT 526 a 278 c 241 g 363 t 9367 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |UCU--AGC| CC-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------ua ccaaccc--- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- uacacucaau ucucauauua uauu------ 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- |-----aaau 841 cAA(AACA)U UCA------- ---------- ---------- ---------- -----cuua- 901 ------(--- --)------- |ccA-AAAA- -GUAU-A(-G GAGA)UAGAA -AUUUc---- 961 -------<-- ----acua-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCAAU AGAG-AU--- ---AGUACC( -GCAA-)GGG ---AAU-GA- 1681 UGaaa--g-a ua-g------ ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -uuuaaua-G U-AAUA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CCU-U UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaaaa-uc- 2101 ugacaaag-- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuauagcca 2701 gaa-acCCCG AA-AUCAG-A CG-AGCUAUC UGA-UAG-UA AUCC------ ---------- 2761 -(-------- ---------- ---------- ---------- -----cca-) ---------- 2821 -GGAUCAA-U UC-AUCUAU( GUGGCAA-A) AUAG-UGAAG --AAACUUA- CAGAUAG-AG 2881 GU(G-AAAU) ACC-AAUC-G A-GCCUGAUG AUAGCU-GGU UGUCC--AGA AA-UAG-AAU 2941 (-UUUA)GUU CU-AC-CUAA AACU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---uaccaca 3121 aaaa------ caaaauaauu ccaaugu--- ---------- ---------- ---------- 3181 ----aa---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UUAG-AGAU AUUCA--AA- AG-GG(-GUA 3481 CAG)CUCUUU UG-AC----- -CAAGG(AUA -CAA)CCU-u gauua-g-cg -ag-uaa--- 3541 --auucacca uuaauu---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- uc>AUAGU-U GGC(UUAGAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 GU|AUAAGUA -AUAA-GAA- ---------- (--guau--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccu-GCA UAA--gcuua u|----auca 4801 g-guc---gg ---------- ----(---au gc)c-c|--g cugaua---- ---------- 4861 ---guuaa-- -ca------- -------a-- ccgaau---- ---------- ---------- 4921 -aau-uaaau acaaaaauag aac--cu--u ----uauuau accaa----- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- --uug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC--- ----(-uu-a ------)--- ----AGGGA| 6541 |--AAGAU-U A--AAAGAAG -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acaaACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCGAG|C-- ---------- ---------- (-auuacua- ------)--- ---------- 6901 ------GUA- UUC-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ca agc)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCCU(-U AAUU-)AGGG AC|UU-GUAU GAACGGCCAC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUUCC UCUA-AU-CA ----AUGAAA 7321 UU|G|ACCUU CU-CG(U-GA AGAGG)CGAG AAU----AAA CAUAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--aau uA|--a-cua auu--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-auugcu ag---ccuau aaauc(u-au 7561 aa)ga-uaca acuaa-acag cauga----- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-a-uu -aa---c-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA GAAAAAAUC- )CUCC-GA|a |c|gaua-|< 8221 uuaua----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- auuua-gac( ucuacaa--- )gucaa-aau -uuacuaau- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------c 8881 g|---cuuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------u- ac)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUACUCUAG 9061 AG(U--CCCU )AUCGACAGC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCA~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~-~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(-~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Roden 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.porce 10775 bp RNA RNA 11-JAN-191 DEFINITION Cavia porcellus. ACCESSION No information KEYWORDS No information. SOURCE Cavia porcellus. ORGANISM Cavia porcellus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L35585 LOCUS GPIRRTR 2647 bp ds-DNA ROD 31-DEC-1994 DEFINITION Cavia porcellus transfer RNA-Phe (tRNA-Phe); 12S ribosomal RNA (12S rRNA); transfer RNA-Val (tRNA-Val); 16S ribosomal RNA (16S rRNA); transfer RNA-Leu (tRNA-Leu). ACCESSION L35585 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Cavia porcellus DNA. ORGANISM Cavia porcellus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Caviidae; Caviinae. REFERENCE 1 (bases 1 to 2647) AUTHORS Frye,M.S. and Hedges,S.B. TITLE Monophyly of the order rodentia inferred from mitochondrial DNA sequences of the genes for 12S rRNA, 16S rRNA, and tRNA-valine JOURNAL Mol. Biol. Evol. (1994) In press STANDARD full automatic COMMENT NCBI gi: 607017 FEATURES Location/Qualifiers source 1..2647 /organism="Cavia porcellus" /sequenced_mol="DNA" tRNA 1..28 /gene="tRNA-Phe" /note="putative" /product="transfer RNA-Phe" rRNA 29..933 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" tRNA 934..997 /gene="tRNA-Val" /note="putative" /product="transfer RNA-Val" rRNA 998..2590 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" tRNA 2591..2647 /partial /gene="tRNA-Leu" /note="putative" /product="transfer RNA-Leu" BASE COUNT 957 a 539 c 473 g 667 t 11 others ORIGIN BASE COUNT 590 a 310 c 272 g 416 t 9187 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~ggaagauu ucagccacca 181 uugaccacuu uga------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------A C--------- ------UAAU 301 |UCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAua----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-uaAA- -GUAU-A(-G GAGA)UAGAA -CUuuc---- 961 -------<-- ------uu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-UGCGCUAU AGAG-GUA-- ----GUACC( -GCAA-)GG- ---AAA-GA- 1681 UGaaagauaa aauug----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aca-G U-AAAG UCAUAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaccc 2041 --)------- -----CUA-U UACCUU(UU- GUAUA)AUGA |GUU-AACUA GAauaa-au- 2101 uuggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agga->---- --(------) ---------- ---------- -cugaagcca 2701 acc-acCCCG AA-ACCAA-A CG-AGCUACU UUU-AAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aca-) ---------- 2821 -GAGCaAA-C UC-GUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUA- GAAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-GCUUGGUG AUAGCU-GGU UAUCC--AAA uA-A-G-AAU 2941 (-AUCA)GUU CA-GC-UUUA AGU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuuccaaaa 3121 aua------- uaaccaaauc aaau-gaaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAA-ACUU AAUCU--AA- AG-AG(-GGA 3481 CAG)CUCUUU AA-AA----- -uaAGG(AAA -CAA)CCU-c uAACA-G-ug -gg-UAA--- 3541 --aaanuaaa ngcucc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAGA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCg-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uGAA--ccc| C--U-GA|-- -------uaa ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aca aUUGG-AU|- UA-AUCUAUA U--------- 4501 ---------- ---------- (guau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 AC|AUUAGUA -ACAA-GAA- ---------- (--auaa--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuc-GCA CAA--gc--u -|----aaau 4801 cauuc----- ---------- ----(---ac ac)---|-au gauu-g---- ---------- 4861 ---uuaa--- -caac----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAACCC- -(GACACA)G G|AGUGC--- ----(uac-u c-----)--- ----AGGAA| 6541 |---AGAC-A A--AACAAAG -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAAUCC|C GC---CUG-U UU(AUCAA)A AN-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auacuua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uuc)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)AAGG AC|UA-GUAU GAAUGGCAAG A-CGAGGGUU 7261 UA-------- ---------- -------uCU GUCUCUUGCU UUAC-GU-nA ----GUGAAA 7321 UU|G|AUCUU CC-CG(U-GA AGAAG)CGGG AAU----AAU AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UU|--A-UUA GCU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--cuuaa ccaa-uuuuu aaccc(a--u 7561 aa)gggc-au aacacauaca cuuaaacc-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-G-CU -AG---U-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAAUAAAAC- )CUCC-GA|A |u|gau--|< 8221 auua------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- gccu-agau( ccaacaa--- )aucga-agu -uuaa----- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---ccaAU UGACC-CAAa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uuc cu)--|---u 9001 UUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--UCAU )AUCGACAAU --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----auaa- 9301 >--------- ---------- ---aCUU-CU CC--(UAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AGu<--- ---------- ---------- -------->- gaggcca-au aa-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----accac> 9541 ---------- ---------- ucau-gccuc gau------- ---------- -------agc 9601 ---------- --uaaaaaau (gauguc--a uauua)a-uu -uu--auagu u--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(aagaaa a--)-aggun g~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.hydro 10775 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Hydrochaeris hydrochaeris.; . ACCESSION AF069533 KEYWORDS . SOURCE Mitochondrion Hydrochaeris hydrochaeris. ORGANISM Mitochondrion Hydrochaeris hydrochaeris. REFERENCE 1 (bases 1 to 1566) AUTHORS ., Cleven,G.C., Kao,D. and Springer,M.S. Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B TITLE for a new order of endemic African insectivore mammals Molecular evidence for multiple origins of Insectivora and JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1566) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069533 BASE COUNT 581 a 343 c 264 g 378 t 9209 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CUAC 301 |UCU--AGU| CCa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(AACA)U UUAucc---- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-aaaA- -GUAU-A(-G GAGA)UAGAA cAUuuu---- 961 -------<-- ------ua-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- a-GGCACUAU AGAG-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagauaa auuac----- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aca-G U-AAAA GCAUAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaccc 2041 --)------- -----CUA-C UACCUU(UU- GUAUA)AUGA |AUU-AACUA GAacca-ac- 2101 uugacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -cugaagcca 2701 acc-acCCCG AA-ACCAA-A CG-AGCUACU UCC-AAA-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aca-) ---------- 2821 -GAGCAAA-C UC-GUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUC- GAAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GUUUGGUG AUAACU-GGU UAUCC--AAA UA-A-G-AAU 2941 (-UUA-)GUU CA-GC-UUUA AGU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuucccaaa 3121 aca------- -ccagaaagu cuaaugaaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAA-ACUU AAUUU--AA- AG-AG(-GGA 3481 CAG)CUCUUU AA-AA----- -caAGG(GAA -CAA)CCU-U CAACA-G-UG -GG-UAA--- 3541 --guaaauca aaa--u---- --acc----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cAAA--CCC| C--U-GA|-- --------cc a--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aca aUUGG-AU|- UA-AUCUAUA A--------- 4501 ---------- ---------- (acac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 AU|AUUAGUA -ACAA-GAA- ---------- (--auau--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-cccu-GCA CAA--gcu-u a|----aauc 4801 aacc------ ---------- ----(--auu ca)---|-au ugauua---- ---------- 4861 ---uuaa--- -caac----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -cuug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(auu-c ------)--- ----AGGAA| 6541 |---AGAC-A A--AAAAAAG -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCAAAUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUAG|C-- ---------- ---------- (-auaacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------aac cca)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)AAGG AC|UA-GUAU GAACGGCUUA A-CGAGGAUU 7261 UA-------- ---------- -------ACU GUCUCUUGCC UUAU-GU-CU ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAC UUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UU|--A-UUA AUU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---acuu aaccacuuua aaccc(a--c 7561 aa)gggc-ac aaaua-caca caagcc---- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-A-UU -AA---U-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAUAAAAC- )CUCC-GA|A |u|gau--|< 8221 auua------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-agac( acuacaa--- )gucaa-agu --ccaca--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------auc 8881 a|---ucaAU UGACC-CAAA ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aac cu)--|---u 9001 UUGAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUGUUUUAG 9061 AG(U--CCAU )AUCGACAAC --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----uaag- 9301 >--------- ---------- ---aCUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--Agu<--- ---------- ---------- -------->- ggggccaaug gu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ------caa> 9541 ---------- ---------- gccaugcccu gauaac---- ---------- ---------- 9601 ---------- --uaaaaaau (gauauc--a uauua)a-uu cuaucauuau c--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cc-(uaaaac a--)-ggggu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.mus.1 10775 bp RNA RNA 08-JAN-1980 DEFINITION Mus musculus mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Mus musculus mitochondria. ORGANISM Mus musculus mitochondria. REFERENCE 1 (bases 1 to 1566) AUTHORS No information JOURNAL mt.M.muscuslus:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01420 Phylo:Mitochondria,Animal,Mammal,mouse BASE COUNT 606 a 303 c 255 g 417 t 9194 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAU 301 |CCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 CAA(AACA)U UUAuccu--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |acu-aaAA- -GUAU-U(-G GAGA)AAGAA -AUucg---- 961 -------<-- -uacaucu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCUAU AGAA-CUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagacua auua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-ACAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |ACU-AACUA GAaaac-uu- 2101 cuaacuaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuacagcua 2701 gaa-acCCCG AA-ACCAA-A CG-AGCUACC UAA-AAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uau-) ---------- 2821 -GAAUCAA-C UC-GUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUU- UAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCUUGGUG AUAGCU-GGU UACCC--AAA AA-AUG-AAU 2941 (-UUAA)GUU CA-AU-UUUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uugcuaaaa 3121 aaa------- caacaaaauc aaaaaguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UAGA-UUAU AGCCA--AA- AG-AG(-GGA 3481 CAG)CUCUUC UG-GA----- --aCGG(AAA -AAA)CCU-u uAAUA-G-ug -aa-UAA--- 3541 --uuaacaaa acagcuu-u- uaacc----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUUGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(A- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cAAc--uuc| C--U-AA|-- -------acu u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aaa aUUGG-GU|- UA-AUCUAUA A--------- 4501 ---------- ---------- (cuuu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAUGCA ACACUGU-UA 4681 GU|AUGAGUA -ACAA-GAA- u--------- (--ucca--- ---------- ---------- 4741 ---------- -----)---- ----a-|UUC U-ccag-ACA UAC--gcg-u a|----uaac 4801 aacuc---gg ---------- ----(---au aa)c-c|-au uguuag---- ---------- 4861 ---uuaau-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAACCC- -(AACACC)G G|AAUGC--- ----(cua-a ------)--- ----AGGAA| 6541 |---AGAU-C C--AAAAAGA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aAGAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacaa- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aaa)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAUU-)AGGG AC|UA-GCAU GAACGGCUAA A-CGAGGGUC 7261 CA-------- ---------- -------ACU GUCUCUUAUC UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUU UC-AG(U-GA AGAGG)CUGA AAU----AUA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAU UA|--U-AUA ACU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--ucuau uuaauuuauu aaacc(u--a 7561 au)ggcc-ca aaaac----- uauagua--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-G-UU -UG---A-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|A |u|gau--|< 8221 uaua------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-agac( -uuacaa--- )gucaa-agu -aaaaucaac ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------aua 8881 u|---cuuAU UGACC-CAGa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uau au)--|---u 9001 UUGAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(U--UCAU )AUCGACAAU -UAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -GA)AGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----uacg- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- agagcca-nc uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---acaaau> 9541 ---------- ---------- aagc-gcucu caacu----- ---------- ---------- 9601 ---------- --uaauuuau (gaauaa-aa ucuaa)a-ua -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 cc-(uagaga a--)-gguu~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.mus.2 10775 bp RNA RNA 22-MAY-1998 DEFINITION Mitochondrion Mus musculus (str. MilP). str. MilP mitocondrion genome, complete sequence; . ACCESSION L07096 KEYWORDS . SOURCE Mitochondrion Mus musculus (str. MilP). str. MilP mitocondrion genome, complete sequence. ORGANISM Mitochondrion Mus musculus (str. MilP). REFERENCE 1 (bases 1 to 16303) AUTHORS Loveland,B.E., Wang,C.-R., Yonekawa,H., Hermel,E. and Fischer-Lindahl,K. TITLE Maternally transmitted histocompatibility antigen of mice: A hydrophobic peptide of a mitochondrially encoded protein JOURNAL Cell 60, 971-980 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L07096 BASE COUNT 608 a 302 c 254 g 418 t 9193 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAU 301 |CCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 CAA(AACA)U UUAuccu--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |acu-aaAA- -GUAU-U(-G GAGA)AAGAA -AUucg---- 961 -------<-- -uacaucu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCUAU AGAA-CUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagacua auua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-ACAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |ACU-AACUA GAaaac-uu- 2101 cuaacuaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuacagcua 2701 gaa-acCCCG AA-ACCAA-A CG-AGCUACC UAA-AAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uau-) ---------- 2821 -GAAUCAA-C UC-GUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUU- UAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCUUGGUG AUAGCU-GGU UACCC--AAA AA-AUG-AAU 2941 (-UUAA)GUU CA-AU-UUUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uugcuaaaa 3121 aaa------- caacaaaauc aaaaaguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UAAA-UUAU AGCCA--AA- AG-AG(-GGA 3481 CAG)CUCUUC UG-GA----- --aCGG(AAA -AAA)CCU-u uAAUA-G-ug -aa-UAA--- 3541 --uuaacaaa acaacuu-u- uaacc----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUUGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(A- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cAAc--uuc| C--U-AA|-- -------acu u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aaa aUUGG-GU|- UA-AUCUAUA A--------- 4501 ---------- ---------- (cuuu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAUGCA ACACUGU-UA 4681 GU|AUGAGUA -ACAA-GAA- u--------- (--ucca--- ---------- ---------- 4741 ---------- -----)---- ----a-|UUC U-ccag-GCA UAC--gcg-u a|----uaac 4801 aacuc---gg ---------- ----(---au aa)c-c|-au uguuag---- ---------- 4861 ---uuaau-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAACCC- -(AACACC)G G|AAUGC--- ----(cua-a ------)--- ----AGGAA| 6541 |---AGAU-C C--AAAAAGA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aAGAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacaa- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aaa)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAUU-)AGGG AC|UA-GCAU GAACGGCUAA A-CGAGGGUC 7261 CA-------- ---------- -------ACU GUCUCUUAUC UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUU UC-AG(U-GA AGAGG)CUGA AAU----AUA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAU UA|--U-AUA ACU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--ucuau uuaauuuauu aaacc(u--a 7561 au)ggcc-ca aaaac----- uauagua--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-G-UU -UG---A-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|A |u|gau--|< 8221 uaua------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-agac( -uuacaa--- )gucaa-agu -aaaaucaac ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------aua 8881 u|---cuuAU UGACC-CAAa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uau au)--|---u 9001 UUGAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(U--UCAU )AUCGACAAU -UAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -GA)AGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----uacg- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- agaggca-cc uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---acaaau> 9541 ---------- ---------- aagc-gcucu caacu----- ---------- ---------- 9601 ---------- --uaauuuau (gaauaa-aa ucuaa)a-ua -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 cc-(uagaga a--)-gguu~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.mus.3 10775 bp RNA RNA 22-MAY-1998 DEFINITION Mitochondrion Mus musculus (str. NZB/B1NJ). str. NZB/B1NJ mitochondrion genome, complete sequence; . ACCESSION L07095 KEYWORDS . SOURCE Mitochondrion Mus musculus (str. NZB/B1NJ). str. NZB/B1NJ mitochondrion genome, complete sequence. ORGANISM Mitochondrion Mus musculus (str. NZB/B1NJ). REFERENCE 1 (bases 1 to 16303) AUTHORS Loveland,B.E., Wang,C.-R., Yonekawa,H., Hermel,E. and Fischer-Lindahl,K. TITLE Maternally transmitted histocompatibility antigen of mice: A hydrophobic peptide of a mitochondrially encoded protein JOURNAL Cell 60, 971-980 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L07095 BASE COUNT 607 a 305 c 254 g 416 t 9193 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAU 301 |CCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 CAA(AACA)U UUAuccu--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |acu-aaAA- -GUAU-U(-G GAGA)AAGAA -AUucg---- 961 -------<-- -uacaucu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCUAU AGAA-CUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagacua auua------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-ACAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |ACU-AACUA GAaaac-uu- 2101 cuaacuaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuacagcua 2701 gaa-acCCCG AA-ACCAA-A CG-AGCUACC UGA-AAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uau-) ---------- 2821 -GAAUCAA-C UC-GUCUAU( GUGGCAA-A) AUAG-UGAGA --AGAUUUU- UAGGUAG-AG 2881 GU(G-AAAA) GCC-UAAC-G A-GCUUGGUG AUAGCU-GGU UACCC--AAA AA-AUG-AAU 2941 (-UUAA)GUU CA-AU-UUUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uugcuaaaa 3121 aaa------- caacaaaauc aaaaaguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UAAA-UUAU AGCCA--AA- AG-AG(-GGA 3481 CAG)CUCUUC UG-GA----- --aCGG(AAA -AAA)CCU-u uAAUA-G-ug -aa-UAA--- 3541 --uuaacaaa acaacuu-u- uaacc----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUUGU-A GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(A- AA)-|GAAAG C(--GUUCAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- cAAc--uuc| C--U-AA|-- -------acu u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aaa aUUGG-GU|- UA-AUCUAUA A--------- 4501 ---------- ---------- (cuuu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAUGCA ACACUGU-UA 4681 GU|AUGAGUA -ACAA-GAA- u--------- (--ucca--- ---------- ---------- 4741 ---------- -----)---- ----a-|UUC U-ccag-GCA UAC--gcg-u a|----uaac 4801 aacuc---gg ---------- ----(---au aa)c-c|-au uguuag---- ---------- 4861 ---uuaau-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAACCC- -(AACACC)G G|AAUGC--- ----(cua-a ------)--- ----AGGAA| 6541 |---AGAU-C C--AAAAAGA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aAGAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacaa- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aaa)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAUU-)AGGG AC|UA-GCAU GAACGGCUAA A-CGAGGGUC 7261 CA-------- ---------- -------ACU GUCUCUUAUC UUUA-AU-CA ----GUGAAA 7321 UU|G|ACCUU UC-AG(U-GA AGAGG)CUGA AAU----AUA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAU UA|--U-AUA ACU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--ucuau uuaaucuauu aaacc(u--a 7561 au)ggcc-ca aaaac----- uauagua--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-G-UU -UG---A-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|A |u|gau--|< 8221 uaua------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-agac( -uuacaa--- )gucaa-agu -aaaaucaac ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------aua 8881 u|---cuuAU UGACC-CAAa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uau au)--|---u 9001 UUGAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(U--UCAU )AUCGACAAU -UAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -GA)AGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----uacg- 9301 >--------- ---------- ---aUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- agagcca-cc uu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---acaaau> 9541 ---------- ---------- aagc-gcucu caacu----- ---------- ---------- 9601 ---------- --uaauuuau (gaauaa-aa ucuaa)a-ua -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 cc-(uagaga a--)-gguu~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.norve 10775 bp RNA RNA 22-JAN-1981 DEFINITION Rattus norvegicus mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Rattus norvegicus mitochondria. ORGANISM Rattus norvegicus mitochondria. REFERENCE 1 (bases 1 to 16303) AUTHORS No information JOURNAL Sept. 22 1981 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01438 Phylo:Mitochondria,Animal,Mammal,Rat BASE COUNT 598 a 330 c 260 g 371 t 9216 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAC 301 |CCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(AACA)U UUAacu---- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-ca-aaAA- -GUAU-U(-G GAGA)AAGAA -AUuua---- 961 -------<-- --cuuacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGAGCUAU AGAG-AAA-- ----GUACC( -GCAA-)GGG ---AAAuGA- 1681 UGaaagacua auuu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-CAAG ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaa- 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaaau-cc- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuuaagcua 2701 aga-acCCCG AA-ACCAA-A CG-AGCUACC UAA-AAA-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----cau-) ---------- 2821 -GAAUCAA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGAUUUU- UAGGUAG-AG 2881 GU(G-AAAA) GCC-UAUC-G A-GCUUGGUG AUAGCU-GGU UGCCC--AAA AA-A-G-AAU 2941 (-UUCA)GUU CAAAC-UUUA AGC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuccaucag 3121 aa-------- caacaaa-uc aaaauguaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAAA-AUAU AGCCA--AA- AG-AG(-GGA 3481 CAG)CUCUUU AG-GA----- -AACGG(AAA -AAA)CCU-U AAAUA-G-ug -aa-UAA--- 3541 --acaacuac aaucacu-u- aacc------ ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUUGU-A GGC(UUAAAA 3781 GCaA)-GCCA -UCAA|U(A- AA)-|GAAAG C(--GU-CAA )GC|caCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- aAAA--uuc| C--A-AA|-- -------auu a--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------caa aUUGG-GC|- UA-AAUCUAU ---------- 4501 ---------- ---------- (gauc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| --cuaguG-A AUACUGU-UA 4681 AU|AUGUG-A -ACAA-GAA- ---------- (--ccaa--- ---------- ---------- 4741 ---------- -----)---- ------|UCC A-ccaa-GCA CAA--gugcu a|----agac 4801 aacc----gg ---------- ----(---au aa)c-c|-au uguuaa---- ---------- 4861 ---uuau--- -ugaa----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -cucg--|-- 6481 -u-UAGCCC- -(AACACA)G G|CGUGC--- ----(uuu-a ------)--- ----AGGAA| 6541 |---AGUU-u ---AAAAAAG -UAA--AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCGAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-UC 6841 CUCUAG|C-- ---------- ---------- (-auaacaa- ------)--- ---------- 6901 ------GUA- UUA-GUGGCA UCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aaa)------ ---------- ---------| 7141 ---GUUC-CA C-|GG-C|-C -GCGGU-(AU -CCCG)ACCG UG|C(AAA)- GG-UAGGAUA 7201 AUC-AC-U-U |GUUCCU(-U AAUU-)AGGG AC|UA-GAAU GAAUGGCUAA A-CGAGGGUC 7261 CA-------- ---------- -------ACC GUCUCUUACU UGCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-AG(U-GA AGGGG)C-GG ACU----CAU AAUAAAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAU UU|--A-CUA AUU--UC--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aauuu aua--uaaaa aaacc(u--a 7561 au)gggc-ga aaaca----a caaaauua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-CU -Acc--A-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA UAAAAAAUC- )CUCC-GA|A |u|gau--|< 8221 uauaaccgag ucggua---- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accg-uguc( cgaccca--- )guca--agu -aauacua-- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------aua 8881 u|---cuuAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u ua)--|---- 9001 UUGAUCAAC- |GGA-CCAAG UUACCC|UAG G|G-UAACAG |C-GCG-A-- CCUAUUUAAG 9061 AG(U--UCAU )AUCGACAAU -UAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GA)AGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UAAGU----- CC|GG--(-C AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----uaca- 9301 >--------- ---------- ---aUUU-CU CC--(CAGUu AC(-GAAA)G GACA-)AGAG 9361 A--AAu<--- ---------- ---------- -------->- ggagaccaac ca-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----aucc> 9541 ---------- ---------- uagg-cuucc aacca----- ---------- -------auu 9601 ---------- --uagaaaaa (cuuaau--a aagua)u-au -au-guacaa u--------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cu-(uagacc ca-)-aguu~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.glis 10775 bp RNA RNA 09-MAY-1998 DEFINITION Mitochondrion Myoxus glis.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; cytochome oxidase II; cytochrome b; cytochrome oxidase I; cytochrome oxidase III; D-loop; mitochondrial; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION AJ0015 2 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; cytochome oxidase II; cytochrome b; cytochrome oxidase I; cytochrome oxidase III; D-loop; mitochondrial; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Myoxus glis. ORGANISM Mitochondrion Myoxus glis. REFERENCE 1 (bases 1 to 16602) AUTHORS Reyes,A., Pesole,G. and Saccone,C. TITLE Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: Further evidence of rodent paraphyly JOURNAL Mol. Biol. Evol. 15, 499-505 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16602) AUTHORS Reyes,A. TITLE Direct Submission JOURNAL Submitted (15-SEP-1997) Reyes A., Centro Studio sui Mitocondri e Metabolismo Energentico, Consiglio Naz. delle Ricerche (CNR), Via Amendola, 165/A, Bari, 70126, ITALY STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ001562 Overlapping sequence:Y11137. BASE COUNT 572 a 293 c 252 g 439 t 9219 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------CAAA 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 CAA(AACA)U UUAucca--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |aau-aaAA- -GUAU-A(-G GAGA)UAGAA -auuau---- 961 -------<-- ----uauu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGCGCUAU AGAU-AAA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaagaauu cuc------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-UAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaaa 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAaac--auc 2101 uuaacauaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuaaaguua 2701 aau-acCCCG AA-ACCAG-A CG-AGCUACU UAC-AAG-CA GCCA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uua-) ---------- 2821 -GGGCuUA-C CC-GUCUAU( GUAGCAA-A) AUAG-UGGGA --AGACUUA- UAAGUAG-AG 2881 GU(G-AAAG) ACC-AAUC-G A-GCUUGGUG AUAGCU-GGU UACCA--GUA CA-A-G-GGU 2941 (-CUUA)GUU CA-GU-UUUA GCU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaccaaaa 3121 aga------- acuccaaauc aaau-guaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-U -UUAA-ACUU UAUCU--AA- AG-AG(-GGA 3481 CAG)CUCUUU AA-GA----- -uaAGG(AAA -UAA)CCU-g uAAUA-G-ug -ag-UAA--- 3541 --acuuaaua uuauucc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->aCAGU-U GGC(CUAAAA 3781 GC-A)-GCCA -CCAG|U(U- AA)-|GAAAG C(--GUUCAA )GC|-UCa-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-u ucaa--cuc| c--U-AU|-- -------uau u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acc aCUGG-GU|- UA-AUCUAUU U--------- 4501 ---------- ---------- (auaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAUGAA AAUAUGU-UA 4681 AU|AUAAGUA -ACAA-GAA- ---------- (--a-aa--- ---------- ---------- 4741 ---------- -----)---- ------|uuu ucuccuaGCA UGA--guu-u -|----auau 4801 cagacc--ga ---------- ----(---au ac)u-c|acu gaua-g---- ---------- 4861 ---uuaa--- -caau----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAAUCC- -(AACACA)G G|UAUGC--- ----(auu-c a-----)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aCUAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUAUAG|C-- ---------- ---------- (-auaacaa- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuc)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCCU(-U AAUU-)AGGG AC|UU-GUAU GAAUGGCUUA A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUACU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-AG(U-GA AGAGG)CUGG AAU----AUA AUAAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAU UG|--G-CUA ACU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aauuu uauacuaacc au-cc(a--u 7561 ua)ggaa-ua accaa----- aaaauaau-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-G-UU -AG---A-AA UUUCGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA UAAAUAAAU- )CUCC-GA|A |A|UAU--|< 8221 aaaaucu--- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- auacaaaua( -auucaa--- )aaucu-aau ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------aua 8881 u|---ccaAU UGAUC-CAAa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uc)--|---- 9001 UUGAUCAAU- |GAA-UUAAU UUAUCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUUAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -GC)CGCUAU UGAC-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----uucaa 9301 >--------- ---------- ---gcuc-uc cc--(CAGU- AC(-GAAA)G GACA-)AGGA 9361 A--AGC<--- ---------- ---------- -------->- agggccu-au gu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uaaca> 9541 ---------- ---------- acau-gcccu aag------- ---------- -------cac 9601 ---------- --ua-uaaau (gaacca--a ucuua)a-uu -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 cc-(uagacc a--)-ggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Siren 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.T.manat 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Trichechus manatus.; . ACCESSION U97337 KEYWORDS . SOURCE Mitochondrion Trichechus manatus. ORGANISM Mitochondrion Trichechus manatus. REFERENCE 1 (bases 1 to 1635) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V .G., Amrine,H.M. and Stanhope,M.J. TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1635) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97337 BASE COUNT 552 a 350 c 284 g 381 t 9208 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAG 301 |CCU--AGC| CCG------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(AACA)U UUAcccaccu a--------- ---------- ---------- ---------- 901 ------(--- --)------- |-uu-aaaA- -GUAU-A(-G GAGA)UAGAA -Auu------ 961 -------<-- ---gaacuc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCUAU AGAG-ACA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaagauua aauu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aca-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-A UACCUU(UU- GCAUA)AUGA |AUU-AACUA GAacaa--u- 2101 cugacgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -cgaa>---- --(------) ---------- ---------- -cugcagcca 2701 ga--agUCCG AA-ACCGG-A CG-AGCUACC UAC-AAG-CA gucu------ ---------- 2761 -(-------- ---------- ---------- ---------- ------aaa) ---------- 2821 -GGACGAA-C UC-AUCUAU( GUGGCAA-A) AUAG-UGAGA --AGACUUG- AAGGUAG-GG 2881 GU(G-AAAA) GCC-AACC-G A-GCCCGGUG AUAGCU-GGU UGUCC--AGG AU-A-G-AAU 2941 (-UUUA)GUU CU-AC-CUAA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuacuaaa 3121 aaga-----a acauuaaucc cuau------ -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UUAG-AGGU ACUCA--AA- AG-AG(-GUA 3481 CAG)CUCUUU UG-AC----- -acAGG(AUA -CAA)CCU-U AGcua-g-ag -ag-UAA--- 3541 --gcauuuca caaucc---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAGAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccau--cuc| c--u-ag|-- --------ac cuaa------ ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aCUGG-AC|- UA-UUCUAUu u--------- 4501 ---------- ---------- (uuua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 AU|AUAAGUA -ACAA-GAA- ---------- (uuau----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-cccu-GCA UAA--gcuua u|----auca 4801 ga-a----cg ---------- ----(--gau gc)c-c|--a cugaua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 -cuagauaa( acuaaaccca cuaaccagaa cc---)uuau caaaccc--- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-uaacCC- -(AACACA)G G|CAUGC--- ----(uuaaa ------)--- ----GGGAA| 6541 |---AGAU-U A--AAAGAAG -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAGACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auauuaa- ------)--- ---------- 6901 ------GUA- UUG-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cac)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCCU(-U AAUU-)AGGG AC|UU-GUAU GAAUGGCCAC A-CGAGAGUC 7261 UA-------- ---------- -------ACU GUCUCUUUCU UCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAU CCUAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAU UA|--A-CUA ACU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- auaauauaaa uauccacccu 7561 acgggcuuaa ccuagcauuu uua------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-G-UU -AA---C-AA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAGAAAAC- )CUCC-GA|A |u|gau--|< 8221 acuau----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------g acuc-agac( cucacca--- )gucca-agu c-ugcga--- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--acuuAU UGACC-CA-- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------auu au)--|---- 9001 -UGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUUUAG 9061 AG(U--CCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--CA -GC)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----ugcc-- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AA-<--- ---------- ---------- -------->U agagucu-ac uc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uuauacg> 9541 ---------- ---------- gagc-gcucu aau------- ---------- -------cuu 9601 ---------- --aauucuau (gaauua--a ucuca)a-ua -ua------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cug(cccaag ac-)cagggc cu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (18)-Metat 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.D.virgi 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Didelphis virginiana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Didelphis virginiana. ORGANISM Mitochondrion Didelphis virginiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z29573 ID DVMTGNME standard; DNA; MAM; 17084 BP. XX AC Z29573; XX DT 27-JAN-1994 (Rel. 38, Created) DT 27-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE D.virginiana mitochondrial DNA complete genome XX KW ATP sythase subunit 6; ATP sythase subunit 8; cytochrome b; KW cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; KW cytochrome c oxidase subunit 3; NADH dehydrogenase subunit 1; KW NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; KW NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; KW NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; KW transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Asp; KW transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Gly; KW transfer RNA-His; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr. XX OS Didelphis virginiana OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Metatheria; Marsupialia; Marsupicarnivora; Didelphidae. XX RN [1] RP 1-17084 RA Janke A., Feldmaier-Fuchs G., Thomas K., von Haeseler A., Paabo S.; RT "The marsupial mitochondrial genome and the evolution of placental RT mammals"; RL Genetics 0:0-0(1994). XX RN [2] RP 1-17084 RA Janke A.; RT ; RL Submitted (21-JAN-1994) to the EMBL/GenBank/DDBJ databases. RL Axel Janke, University of Munich, Department of Zoology, RL Luisenstrasse 14, D-80021 Munich, Germany XX FH Key Location/Qualifiers FH FT source 1..17084 FT /organism="Didelphis virginiana" FT /dev_stage="adult" FT /isolate="fresh road killed idividual" FT /tissue_type="liver" FT /chromosome="complete mitochondrial genome" FT tRNA 1..70 FT /note="tRNA-Phe" FT /anticodon=(pos:32..34,aa:Phe) FT rRNA 72..1022 FT /note="12S rRNA" FT tRNA 1024..1095 FT /note="tRNA-Val" FT /anticodon=(pos:1058..1060,aa:Val) FT rRNA 1096..2665 FT /note="16S rRNA" FT tRNA 2666..2739 FT /note="tRNA-Leu (UUR)" FT /anticodon=(pos:2693..2695,aa:Leu) FT CDS 2741..3696 FT /product="NADH dehydrogenase subunit 1" FT /transl_table=2 FT tRNA 3697..3765 FT /note="tRNA-Ile" FT /anticodon=(pos:3726..3728,aa:Ile) FT tRNA complement(3763..3832) FT /note="tRNA-Gln" FT /anticodon=(pos:3799..3801,aa:Gln) FT tRNA 3833..3901 FT /note="tRNA-Met" FT /anticodon=(pos:3863..3865,aa:Met) FT CDS 3902..4945 FT /product="NADH dehydrogenase subunit 2" FT /transl_table=2 FT tRNA complement(4943..5011) FT /note="tRNA-Ala" FT /anticodon=(pos:4979..4981,aa:Ala) FT tRNA complement(5021..5086) FT /note="tRNA-Cys" FT /anticodon=(pos:5055..5057,aa:Cys) FT tRNA 5097..5167 FT /note="tRNA-Trp" FT /anticodon=(pos:5130..5132,aa:Trp) FT tRNA complement(5254..5325) FT /note="tRNA-Asn" FT /anticodon=(pos:5291..5293,aa:Asn) FT tRNA 5328..5395 FT /note="tRNA-Tyr" FT /anticodon=(pos:5364..5366,aa:Tyr) FT CDS 5397..6938 FT /product="cytochrome c oxidase subunit 1" FT /transl_table=2 FT tRNA complement(6940..7008) FT /note="tRNA-Ser (UCN)" FT /anticodon=(pos:6976..6978,aa:Ser) FT tRNA 7012..7081 FT /note="tRNA-Asp (GUC)" FT /anticodon=(pos:7043..7045,aa:Asp) FT /note="the second nucleotide of the anticodon is edited at FT the RNA-level from C to U, restoring the normal anticodon FT GUC for tRNA-Asp" FT CDS 7084..7791 FT /product="cytochrome c oxidase subunit 2" FT /transl_table=2 FT tRNA 7766..7824 FT /note="tRNA-Lys" FT /anticodon=(pos:7787..7789,aa:Lys) FT CDS 7827..8036 FT /product="ATP sythase subunit 8" FT /transl_table=2 FT CDS 7991..8670 FT /product="ATP sythase subunit 6" FT /transl_table=2 FT CDS 8671..9516 FT /product="cytochrome c oxidase subunit 3" FT /transl_table=2 FT tRNA 9455..9522 FT /note="tRNA-Gly" FT /anticodon=(pos:9485..9487,aa:Gly) FT CDS 9520..9870 FT /product="NADH dehydrogenase subunit 3" FT /transl_table=2 FT tRNA 9869..9938 FT /note="tRNA-Arg" FT /anticodon=(pos:9900..9902,aa:Arg) FT CDS 9939..10235 FT /product="NADH dehydrogenase subunit 4L" FT /transl_table=2 FT CDS 10229..11653 FT /product="NADH dehydrogenase subunit 4" FT /transl_table=2 FT tRNA 11607..11675 FT /note="tRNA-His" FT /anticodon=(pos:11637..11639,aa:His) FT tRNA 11676.11731 FT /note="tRNA-Ser (AGY)" FT /anticodon=(pos:11694..11696,aa:Ser) FT tRNA 11733..11803 FT /note="tRNA-Leu (CUN)" FT /anticodon=(pos:11765..11767,aa:Leu) FT CDS 11804..13603 FT /product="NADH dehydrogenase subunit 5" FT /transl_table=2 FT CDS complement(13600..14106) FT /product="NADH dehydrogenase subunit 6" FT /transl_table=2 FT tRNA complement(14107..14175) FT /note="tRNA-Glu" FT /anticodon=(pos:14143..14145,aa:Glu) FT CDS 14177..15325 FT /product="cytochrome b" FT /transl_table=2 FT tRNA 15334..15401 FT /note="tRNA-Thr" FT /anticodon=(pos:15364..15366,aa:Thr) FT tRNA complement(15404..15469) FT /note="tRNA-Pro" FT /anticodon=(pos:15437..15439,aa:Pro) FT misc_feature 15470..17084 FT /note="control region" XX SQ Sequence 17084 BP; 6034 A; 3613 C; 2056 G; 5381 T; 0 other; BASE COUNT 601 a 304 c 247 g 418 t 9205 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAC 301 |CAC--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAUU 841 UAA(ACCA)U UUUaauu--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-ccUA- -GUAU-A(-G GUGA)UAGAA -Aagau---- 961 -------<-- ---auaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCUAU AGUUUAUA-- ----GUACC( -GCAA-)GGG ---AAA-AA- 1681 UGaaagauaa auu------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacu 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |UUU-AGCCA GUcaa--ca- 2101 cggacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- aga-->---- --(------) ---------- ---------- -auuaugccc 2701 gac-auCCCG AA-AUUAA-G UG-AGCUACU AUA-AGA-CA GUUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----cuaau) ---------- 2821 -GAACCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUU- AUAGUAG-AA 2881 GU(G-AAAA) ACC-UAUC-G A-ACUUAAUG AUAGCU-GGU UAUCC--AAA AA-A-G-AAU 2941 (-UUAA)GUU CA-AC-UUUA AGU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccuauuacaa 3121 ugcc-----u auucaaagca cac------- -aauaa---- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GC-U -UAAA-AGUU AGUCA--AA- GA-AG(-GGA 3481 CAA)CUUCUU UG-AC----c --aAGU(AUA -CAA)ACU-A CAuua-g-ag -gg-UAA--- 3541 --uaauuaau aauccac--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUCGU-U GGC(UUAAAA 3781 GC-A)-GCCA -UCAA|c(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- aaaa--ccc| c--u-aa|-- -------aau ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acu aUUGG-AU|- GA-UUCUAUG a--------- 4501 ---------- ---------- (uauu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AuAGAAUAC auAAUGC-UA 4681 AA|AUUAGUA -AUAA-GAA- c--------- (--ccc---- ---------- ---------- 4741 ---------- -----)---- ----g-|UUC U-ccuc-GCA CAA--gccua a|----guua 4801 gaauaa-cgg ---------- ----(---au au)c-c|-ca cuaaua---- ---------- 4861 ---guuaa-- -caaa----- ---------- ---------- ---------- -------<-- 4921 --aacauaa( uaacauucau caaccagccu c----)uuau acaaaau--- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -uuug--|-- 6481 -u-UAAUCC- -(AACACA)G G|UGUGC--- ----(auuaa ------)--- ----AGGAA| 6541 |---AGAU-A U--AAAAGAA -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c auGAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auuacaa- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua aac)------ ---------- ---------| 7141 ---UUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUCC(-U AAAU-)AGGG AC|UU-GUAU GAAUGGCAua A-CGAGGGUU 7261 CA-------- ---------- -------ACU GUCUCUUuUU CUUA-AU-CA ----AUGAAA 7321 UU|G|ACCUA CC-CG(U-GC AGAGG)CGGG UAU----AUU AAUAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AGA UU|--A-AUA ACU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- aauaaaacua guacaaacc( 7561 cuag---)gg aauaacauua uuauuau--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-G-UU -AU---A-UU CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------AA CAAAAAAAC- )CUCC-GA|A |u|gac--|< 8221 aua------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-agau( -uaacua--- )aucca-agu --gcacaaa- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ------ag-c 8881 c|--aguaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(C--CCAU )AUCGAAAAU cuAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----uauua- 9301 >--------- ---------- --A-UUU-CU CC--(CAGU- AC(-GAAA)G GACC-)AGAG 9361 A--AA-<--- ---------- ---------- -------->u agggcca-ac au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaucu-> 9541 ---------- ---------- augc-gcccu cau------- ---------- -------aaa 9601 ---------- ----auuaau (gaaaua-ua ucuaa)a-uu -aa-accauu u--------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 ucu(-agaua ---)agagcc c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.robus 10775 bp RNA RNA 24-FEB-1997 DEFINITION Mitochondrion Macropus robustus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase subunit I; cytochrome oxidase subunit II; cytochrome oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y10524 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase subunit I; cytochrome oxidase subunit II; cytochrome oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Macropus robustus. ORGANISM Mitochondrion Macropus robustus. REFERENCE 1 (bases 1 to 16896) AUTHORS Janke,A., Xu,X. and Arnason,U. TITLE robustus) and the phylogenetic relationship among Monotremata, Marsupialia and Eutheria The complete mitochondrial genome of the wallaroo (Macropus JOURNAL Proc. Natl. Acad. Sci. U.S.A. 94, 1276-1281 (1997) STANDARD No information REFERENCE 2 (bases 1 to 16896) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (14-JAN-1997) U. Arnason, University of Lund, Dept. of Genetics, Division of Evolutionary Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10524 BASE COUNT 595 a 337 c 256 g 384 t 9203 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----c-aa-u 301 |uua--agc| cc-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<-----a ucca-----a cuaucaaauc aaauaucaca 601 aacaccu--- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----aauc 841 uAA(ACCA)U Uca------- ---------- ---------- ---------- --------ac 901 c-----(--- --)------- |ugu-cuaA- -GUAU-A(-G GUGA)UAGAA -aagac---- 961 -------<-- --ugacucca ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --GGCGCAAU AACG-CA--- ---AGUACC( -GCGA-)GGG ---AAA---- 1681 -------c-- augaaagacu aauua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGA |UUU-AGCCA GUcaa--ac- 2101 cggacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- --uuacgccc 2701 gcc-uucccG AA-AUCAA-G UG-AGCUACU AUA-AAA-CA GUU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----gacag) ---------- 2821 --AACCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUU- AUAGUAG-AG 2881 GU(G-AAAA) GCC-UACC-G A-ACUUGAUG AUAGCU-GGU UGUCC--AAA AU-AUG-AAU 2941 (-UUCA)GUU CA-AC-UUUA AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uaauuaaauu 3121 acca-----a caaacuuaac uuaa------ ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-AGCU AAUCA--AA- AG-GG(-GGA 3481 CAA)CUCUUU UG-AU----- -cauGU(AAA -CAA)ACu-u uauua-g-ag -ga-UAA--- 3541 --ugaauacu aaga------ ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------acca -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->-UUGU-A GGC(CCAAAA 3781 GC-A)-GCCA -CCAA|-(uu -a)a|GAAAG C(--GUUAAA )GC|-UCAa- augu--<--- 3841 auuaacagac cuuaauccca auaauauua- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 --------uc aaaa--ucc- c--u-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- --cauagacu aUUGG-AC|- GA-UUCUAUA ---------- 4501 ---------- ---------- (aucu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAGAAGAC AUAAUGC-UA 4681 AA|AUAAGUA -ACAA-GAA- a--------- (---uauu-- ---------- ---------- 4741 ---------- -----)---- ----uc|ucc u----a-GCA CAA--gccua a|----auua 4801 gcaac---gg ---------- ----(--aau ac)c-c|--a cuaaca---- ---------- 4861 ---auuaa-- -caa------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- aucaauaauc cuaa--ccaa auaacuagua aaauucuuac aacua----- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uugu-|-- 6481 ---UAACCC- -(GACACA)G G|AGUGC--- ----(uaac- ------)--- ----aggaa| 6541 |---AGAU-U A--AAAGGAA -UAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u acAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|c-- ---------- ---------- (--auaacaa ------)--- ---------- 6901 ------aUA- UUA-GAGGCA ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AG-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua aca)------ ---------- ---------| 7141 ---CUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUCU(-U AAUU-)AGAG AC|UC-GUAU GAAUGGCAUC A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUAUU CCCA-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GC AGAGG)CGGG AAU----AUU AAUACAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AGA UU|--c-aua gucuaa---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- uucaa-acaa 7561 uucuacccua cauacaggaa caaacacaga ccuac----- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-agac uau---A-AC CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA UAAAAAAAC- )CUCC-GA|A |u|gacu-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gau( -ucauua--- )aucua-agc -guaacacua ccag------ 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -|----uaau UGACC-ca-- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uau uu)--|---- 9001 -ugAUCAACA |GAA--CAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(C--CCAU )AUCGACAAU -uAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-AAAU GG-UG(--CA -GC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- ---cauuaa- 9301 >--------- ---------- --u-ucc-UC CC--(-AGU- AC(-GAAA)G GACAA)GAGA 9361 A--AU-<--- ---------- ---------- -------->- aaggccu-ac ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- guga-gccuu aga------- ---------- -------agc 9601 ---------- ---aagauau (gaauau--a ucuaa)a-ua -uc-cuaauu c--------- 9661 ---------- ---------| ------(--- )--------- -------|cu 9961 cu-(agaaaa g--)-agau~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.gliro 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Dromiciops gliroides.; . ACCESSION U97341 KEYWORDS . SOURCE Mitochondrion Dromiciops gliroides. ORGANISM Mitochondrion Dromiciops gliroides. REFERENCE 1 (bases 1 to 1557) AUTHORS .G., Amrine,H.M. and Stanhope,M.J. Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1557) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97341 BASE COUNT 576 a 317 c 253 g 411 t 9218 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G Cca------- ------aucg 301 |cuu--AGC| c--------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ucua 841 caa(aaca)u uuaacuc--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-ccaA- -GUAU-A(-G GUGA)UAGAA -Cagau---- 961 -------<-- ---acaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---GCGCUAU AACG-AUA-- ----GUACC( -GCAA-)GGG ---AAA-AC- 1681 UGaaagacag auu------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-U UACCUU(UU- GCAUA)AUGA |UUU-AGCUA GUuaa--ac- 2101 cggacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- aga-->---- --(------) ---------- ---------- -auuaugccc 2701 gac-cuCCCG AA-AUUAA-G UG-AGCUACU AUA-AAA-CA GU-a------ ---------- 2761 -(-------- ---------- ---------- ---------- ----uaaaa) ---------- 2821 -GAACCAA-C UC-GUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUU- AUAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-ACUUAAAG AUAGCU-GGU UGUCC--AAA AU-ACG-AAU 2941 (-UUUA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uauauauuu 3121 agug-----a aaauaaacca cacc-uuaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAA-AGCU AAUCA--AA- AG-AG(-GGA 3481 CAA)CUCUUU UG-AU----c --aUGU(AAA -CAA)ACU-U UAuua-g-ag -gg-UAA--- 3541 --ugcuaucc uuacaua-c- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUUGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- aaaa--ccc| c--u-aa|-- -------uau aaa------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u aUUGG-AU|- GA-Uccuaua u--------- 4501 ---------- ---------- (uuuu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAC AUAAUGC-UA 4681 AA|AUUAGUA -ACAA-GAA- ---------- (-cccc---- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccaa-GCA CAA--gcuua u|----auua 4801 g--uaa-cgg ---------- ----(---aa aa)c-c|-ca cuaaca---- ---------- 4861 ---auuaa-- -caaa----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAACCC- -(AACACA)G G|UGUGC--- ----(auc-u a-----)--- ---aAGGAA| 6541 |---AGAU-U A--AAAAGAA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c caAAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-auaacaa- ------)--- ---------- 6901 ------AUA- UUA-GAGGCA UCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AG-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu aaa)------ ---------- ---------| 7141 ---CUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUCC(-U AAUU-)AGGG AC|UC-GUAU GAAUGGCAUG A-CGAGGGUU 7261 UA-------- ---------- -------ACU GUCUCUUAUU CUCU-AU-CA ----GUGAAA 7321 UU|G|ACCUC CC-CG(U-GC AGAGG)CGGG GAU----AUA GAUACAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AGA UU|--C-AUG AUA--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ucuc uacccauuuu caccc(c--a 7561 ag)ggac--u aagaccacga gcuc------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAU-A-UC -AU---A-AU CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA UAAAACAAC- )CUCC-GA|A |u|gac--|< 8221 aua------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-agau( ucuacca--- )aucua-agu -guagcaa-- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ------uacc 8881 a|---guaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---- 9001 UUGAUCAAC- |GGA-ACAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUUAAG 9061 AG(C--CCAU )AUCGACAAU -uAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGA------- CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- ----uuuuu- 9301 >--------- ---------- ---AUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAU<--- ---------- ---------- -------->- aaggcca-ac au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uacua-> 9541 ---------- ---------- auga-gccuu agaagua--- ---------- ---------- 9601 ---------- ----auauau (gaaauu--a ucuua)a-ua -uc------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 ca-(uagaaa a--)-uggcu a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.afer 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Orycteropus afer.; . ACCESSION U97338 KEYWORDS . SOURCE Mitochondrion Orycteropus afer. ORGANISM Mitochondrion Orycteropus afer. REFERENCE 1 (bases 1 to 2601) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V .G., Amrine,H.M. and Stanhope,M.J. TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2601) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97338 BASE COUNT 586 a 321 c 257 g 411 t 9200 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ------UAAA 301 |GCU--AGC| CCC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AGAC 841 UAA(AACA)U UUAgaccc-- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-aaaA- -GUAU-A(-G GAGA)UAGAA -Auuu----- 961 -------<-- ---uacug-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCUAU AGCGCACA-- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaagauaa auuu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aua-g u-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuagcc 2041 --)------- -----CUU-C UACCUU(UA- GCAUA)AUGA |AUU-AACUA GAauaa-gc- 2101 uuggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -ugaa>---- --(------) ---------- ---------- -uuacaguca 2701 acu-uuCCCG AA-ACCAG-A CG-AGCUACU UAA-AGU-Ca aucu------ ---------- 2761 -(-------- ---------- ---------- ---------- ---ccccaa) ---------- 2821 -GGAUCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAACAU- UAAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCCUGGUG AUAGCU-GGU UAUCC--AAA AU-A-G-AAU 2941 (-CUAA)GUU CA-AC-CUAA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --uuacuaua 3121 agaa-----c uuuaacuaau cccuccac-- -guaa----- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UUAG-AUAU AAUCA--AA- AG-AG(-GUA 3481 CAG)CUCUUU UG-AC----- -acAGG(AUU -CAA)CCU-U AAuua-g-ag -ag-UAA--- 3541 --gaacuuau ccauacc--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAUA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccaa--cuc| c--u-aa|-- --------aa a--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------auu aUUGG-AU|- UA-CUCUAUa a--------- 4501 ---------- ---------- (gcau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA AUAAUGU-UA 4681 AU|AUAAGUA -ACAA-GAA- ---------- (uaua----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-ccau-GCA CAA--acuua u|----auca 4801 gauc----gg ---------- ----(--aua ua)c-c|--a cuggua---- ---------- 4861 ---guuaa-- -caa------ ---------- ---------- ---------- -------<-- 4921 -cuauauaa( auaaaaauac uacuaaacca c----)uuau aaauauuac- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---ug--|-- 6481 -u-uaacCC- -(AACACA)G G|AGUGC--- ----(aucuc ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAAAAG -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c uuGAAUCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (-augacua- ------)--- ---------- 6901 ------GUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a cac)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUC(-U AAAU-)AAGG AC|UU-GCAU GAAUGGCCAC A-CGAGAAUU 7261 CA-------- ---------- -------ACU GUCUCUUGCU UUUU-AU-CA ----GUGAAA 7321 UU|G|ACCUU CC-CG(U-GA AGAGG)CGGG UAU----GUA ACUAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAU UA|--A-UUA AUU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----ac aacucaaauu acuaagugc( 7561 uaaua--)gc auauaucucu aguuuaa--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-A-UU -AA---C-AA UUUAGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------CA UAAAAAACC- )CUCC-GA|A |u|gau--|< 8221 auuau----- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- guua-agac( ucaacca--- )gucua-aac --uucuac-- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- -------a-u 8881 c|--accaAU UGAUC-CA-- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------uaua cu)--|---- 9001 -UGAUCAAC- |GGA-ACAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUAUUCUAG 9061 AG(U--CCCU )AUCGACGAU --UGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-CAAU GG-UG(--UA -GC)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- ----ccua-- 9301 >--------- ---------- --A-UUU-UU CC--(CAGU- AC(-GAAA)G GAAA-)AGAA 9361 A--AA-<--- ---------- ---------- -------->U agagccu-ac uc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---cuacag> 9541 ---------- ---------- aagc-gcucu uaa------- ---------- -------auu 9601 ---------- --uaauggau (gaauuu--a uauaa)a-cc -ca-ga--aa u--------- 9661 ---------- ---------| ------(--- )--------- -------|au 9961 ccu(agaac- ---)aggaua u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.kalub 10775 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Echymipera kalubu.; . ACCESSION U97342 KEYWORDS . SOURCE Mitochondrion Echymipera kalubu. ORGANISM Mitochondrion Echymipera kalubu. REFERENCE 1 (bases 1 to 2599) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V .G., Amrine,H.M. and Stanhope,M.J. TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2599) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U97342 BASE COUNT 610 a 289 c 252 g 426 t 9198 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------uaac 301 |cua--AGC| cc-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----uaaa 841 aaa(aaca)u uuauuc---- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-cguA- -GUAU-A(-G GCGA)UAGAA -aagau---- 961 -------<-- ---uaauag- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --GGAGCAAU AACG-AAA-- ----GUACC( -GUAA-)GGG ---AAA-UA- 1681 UGaaagaaug auuu------ ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G c-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaucc 2041 --)------- -----CUU-G UACCUU(UU- GCAUA)AUGA |AUU-AGCUA Gauaa--ac- 2101 ugggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- --uuacgucc 2701 acc-ucCCCG AA-AUUAA-G UG-AGCUACU AUA-AAA-CA GC-a------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aauua) ---------- 2821 -GAGCCAA-C UC-AUCUAU( GUAGCAA-A) AUAG-UGAGA --AGAUUUU- AUAGUAG-AG 2881 GU(G-AAAA) GCC-UAUC-G A-ACUUAAAG AUAGCU-GGU UGUCC--AAA AC-AUG-AAU 2941 (-UUAA)GUU CA-AC-UUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaa-uaua 3121 agua-----a auaauaaacc auau-uuaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAC-AGUU AAUCA--AA- AG-GG(-GGA 3481 CAA)CUCUUU UG-AU----u --aAGU(AAA -CAA)ACU-U AUuua-g-ag -gg-UAA--- 3541 --ugauuuac cuauuaa-a- c--------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-U GGC(UUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- aaaa--ccc| c--u-aa|-- -------aaa uaau------ ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------u auUGG-AC|- GA-Uucuaua a--------- 4501 ---------- ---------- (uagu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAC AUAAUGC-UA 4681 AU|AUCAGUA -ACAU-GAA- ---------- (-cuac---- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuu-GCA CAA--gcuua a|----auua 4801 g--aaa-cgg ---------- ----(---aa ca)c-c|-ca cuaaua---- ---------- 4861 ---auuaa-- -caaa----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 -u-UAAUCC- -(AACACA)G G|CAUGC-aa aac-(acu-c a-----)uua ---aAGGAA| 6541 |---AGAU-U A--AAAAGAA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c caUAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|A-- ---------- ---------- (-auaauua- ------)--- ---------- 6901 ------UUA- UUA-GAGGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AG-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu uaa)------ ---------- ---------| 7141 ---CUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|UA-GUAU GAAUGGCAUA A-CGAGGGUU 7261 CA-------- ---------- -------ACU GUCUCUUAUU CUUA-AU-CA ----GUGAAA 7321 UU|G|ACUUC CC-CG(U-GC AGAGG)CGGG -AU----AUA UAUACAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AGA CU|--A-ACA AGU--UA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---guuc aacaaaauuc aauuc(u--a 7561 aa)gaaa--u aacauaauga aacu------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UAA-C-UU -GC---A-GC CUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA UAGAAUAAC- )CUCC-GA|A |u|gau--|< 8221 aua------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accu-agau( -uaacua--- )aucua-agu -guauuaaua au-------- 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|--aguaAU UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u uc)--|---- 9001 UUGAUCAAC- |GGA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUUUAG 9061 AG(C--CCAU )AUCGACAAU -uAGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-AAAU GG-UG(--CA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- ----uauuc- 9301 >--------- ---------- ---AUUU-CU CC--(CAGU- AC(-GAAA)G GACA-)AGAG 9361 A--AAU<--- ---------- ---------- -------->- aaggcca-ac au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaacag> 9541 ---------- ---------- auga-gccuu agaauua--- ---------- ---------- 9601 ---------- ----auauau (gaacua--a ucuca)a-ua -uu------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uc-(uagaaa a--)-gaguc a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (16)-Sauro 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (17)-Sauri 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (18)-Archo 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (19)-Aves 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.pla.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Anas platyrhynchos. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Anas platyrhynchos. ORGANISM Mitochondria Anas platyrhynchos. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L16770 LOCUS DUKTGRG 3919 bp ds-DNA VRT 17-MAY-1993 DEFINITION Anas platyrhynchos mitochondrial complete transfer RNA-Glu, transfer RNA-Phe, transfer RNA-Val, transfer RNA-Leu, 12S ribosomal RNA, and 16S ribosomal RNA genes. ACCESSION L16770 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA; transfer RNA-Glu; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Anas platyrhynchos (strain Tsai ya, organelle Mitochondrion Anas platyrhynchos) adult liver DNA. ORGANISM Mitochondrion Anas platyrhynchos Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Anseriformes; Anatidae. REFERENCE 1 (bases 1 to 3919) AUTHORS Liu,S. and Lin,L. TITLE Sequence analysis of mitochondrial DNA control region from two genera of ducks JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers tRNA 1..71 /anticodon=(pos:40..42,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Leu" /note="putative" D-loop 72..1117 tRNA 1118..1187 /anticodon=(pos:1150..1152,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1188..2172 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2173..2243 /anticodon=(pos:2206..2208,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2244..3845 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3846..3919 /anticodon=(pos:3881..3883,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" source 1..3919 /organism="Mitochondrion Anas platyrhynchos organelle Mitochondrion Anas platyrhynchos" /strain="Tsai ya" /dev_stage="adult" /tissue_type="liver" /sequenced_mol="DNA" BASE COUNT 1236 a 1095 c 752 g 836 t ORIGIN BASE COUNT 547 a 405 c 323 g 327 t 9173 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~aG C--------- -----cuucc 301 |UCU--AGC| UCA-Gccg-c -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 UAA(AGCA)U UUUcu----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |agu-ccUA- -GUAU-A(-G GCGA)UAGAA -Aagac---- 961 -------<-- -ac------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------U UAGACGCGAU AGAG-ACCA- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauaaua gugaaaacu- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-GACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--ac- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -cugaaguuu 2701 gcc-auCCCG AA-ACCCAaG CG-AGCUACU UAC-GAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ------uua) ---------- 2821 -GAGCAAA-C CC-GUCUCU( GUUGCAA-A) AGAG-UGGGA --UGACUUG- UCAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UACCU--GUG AA-AUG-AAU 2941 (-CUAA)GUU CU-CC-CUUA AUCU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---ucccuac 3121 cgga-----c aacacccaga accacaa--- ---------- ---------- ---------- 3181 ----ugagau ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GA-U -UAAG-AGCU AUUUA--AU- GG-AG(-GUA 3481 CAG)CUCCAU UA-AA----- -aAAGG(ACA -CAA)CCU-c gacua-g-ug -ga-UAA--- 3541 --auc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -ACUGU-G GGC(CUUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UCC-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ga ugaa--ucc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccaca aACAG-GU|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 AA|AUGAGUA -ACUU-GGG- g--------- (-ccacaccc a--------- ---------- 4741 ---------- -----)---- ----c-|ccc ucuagcgGCG CAA--gcuua c|----au-- 4801 ---------- ---------- ----(-gaga ac)---|--- ---acc---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-c 4921 ccagacauau acaaaaacuc cuacaagacc agguauaaac ucac------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(cca-u a-----)--- ----agag-| 6541 |---AGAU-U A--AAAUCUG -UGAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a -cAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (-----aaac aaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------c uag)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUCACG GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUC CC-CG(U-GC AAAAG)CGGG GAU----GUG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--caacg gcc--ac--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cgcg ---aaccuaa gacua-aacc 7561 ca-ccggggc uacagacau- -cgcagagca ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-cc -ga--uA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA CAACAGAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacacc ucuuu----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-gag( -ccaccc--- )cucaa-agu -gcuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|---ga-cc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCCCUCAAG 9061 AG(C--CCCU )AUCGACAGG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CU -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----aacu- 9301 >--------- ---------- --A-CUC-UC CC--(CAGU- AC(-GAAA)G GACC-)GGGA 9361 A--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uacaa> 9541 ---------- ---------- gcac-gccuu cc-------- ---------- -------cuc 9601 ---------- --uaaguagu (gaaacc--a acuca)a-cu -au-gaa-ga g--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 cu-(-agaaa ---)-aggau ca~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.pla.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Anas platyrhynchos. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Anas platyrhynchos. ORGANISM Mitochondria Anas platyrhynchos. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87854 LOCUS MTAPLA16S 1201 bp DNA VRT 05-DEC-1995 DEFINITION A.platyrhynchos mitochondrial gene for 16S ribosomal RNA. ACCESSION X87854 NID g1103593 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE domestic duck. ORGANISM Mitochondrion Anas platyrhynchos Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Anseriformes; Anatidae; Anas. REFERENCE 1 (bases 1 to 1201) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1201) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1201) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103593 FEATURES Location/Qualifiers source 1..1201 /organism="Anas platyrhynchos" /mitochondrion rRNA 1..1201 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 405 a 312 c 246 g 238 t ORIGIN BASE COUNT 405 a 312 c 246 g 238 t 9574 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~aa--- ---------- ---------- ---------- 3181 ----ugagau ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GA-U -UAAG-AGUU AUUUA--AU- GG-AG(-GUA 3481 CAG)CUCCAU UA-AA----- -aAAGG(ACA -CAA)CCU-c gacua-g-cg -ga-UAA--- 3541 --auc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -ACUGU-G GGC(CUUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UCC-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ga ugaa--ucc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ucaga aACAG-GU|- CA-ACCUAU- ---------- 4501 ---------- ---------- (gaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 AA|AUAAGUA -ACUC-GGG- g--------- (-ccacauca a--------- ---------- 4741 ---------- -----)---- ----c-|ccc ucuaacgGCG CAA--gcuua c|----au-- 4801 ---------- ---------- ----(-gagg ac)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-c 4921 cuagacauau acaaaaacuc cuacaagacc agguauaagc uuac------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(cua-u a-----)--- ----agag-| 6541 |---CGAU-U A--AAAUCUG -UGAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ac cacgGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (----aaauc aagcaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------c cag)------ ---------- ---------| 7141 ---GUUA-AA A-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCC 7261 UA-------- ---------- -------ACU GUCUCUCACA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUC CC-CG(U-AC AAAAG)CGGG GAU----GUG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--caacg gcc--ac--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cgcg ---aaccuac aaacc-aacc 7561 cc-acugggc cacuacuaau -cgcaaggca ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-cc -ga--cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAACAGACC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacacc ucuuu----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-gag( -ccaccc--- )cucaa-agu -gcuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|---ga-cc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCCCUCAAG 9061 AG(C--CCCU )AUCGACGAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAGU GG-UG(--CA -GC)CGCUAC UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----aacc- 9301 >--------- ---------- --A-CUC-UC CC--(CAGU- AC(-GAAA)G GACC-)GGGA 9361 A--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uacau> 9541 ---------- ---------- gcac-gccuu cc-------- ---------- -------cuc 9601 ---------- --uaaauagu (gaaacc--a acuga)a-cu -gu-gaa-ga g--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 cu-(-agaaa ---)-agga- ccagcuagag uggcagagcu cggcaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.mosch 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Cairina moschata. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Cairina moschata. ORGANISM Mitochondria Cairina moschata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L16769 LOCUS CIITGRG 3858 bp ds-DNA VRT 17-MAY-1993 DEFINITION Cairina moschata mitochondrial complete transfer RNA-Glu, transfer RNA-Phe, transfer RNA-Val, transfer RNA-Leu, 12S ribosomal RNA, and 16S ribosomal RNA genes. ACCESSION L16769 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA; transfer RNA-Glu; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Mitochondrion Cairina moschata (strain Mascovy, organelle Mitochondrion Cairina moschata) adult liver DNA. ORGANISM Mitochondrion Cairina moschata Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Anseriformes; Anatidae. REFERENCE 1 (bases 1 to 3858) AUTHORS Liu,S. and Lin,L. TITLE Sequence analysis of mitochondrial DNA control region from two genera of ducks JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers tRNA 1..67 /anticodon=(pos:36..38,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Glu" /note="putative" D-loop 68..1111 tRNA 1112..1179 /anticodon=(pos:1144..1146,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1180..2172 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2173..2244 /anticodon=(pos:2207..2209,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2245..3784 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3785..3858 /anticodon=(pos:3820..3822,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" source 1..3858 /organism="Mitochondrion Cairina moschata organelle Mitochondrion Cairina moschata" /strain="Mascovy" /dev_stage="adult" /haplotype="diploid" /tissue_type="liver" /sequenced_mol="DNA" BASE COUNT 1206 a 1111 c 740 g 801 t ORIGIN BASE COUNT 515 a 406 c 315 g 304 t 9235 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~aG C--------- -----cuccc 301 |UCU--AGC- UCA-GCCGC- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(AACA)U UUUcc----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |agu-ccUA- -GUAU-A(-G GCGA)UAGAA -Aagac---- 961 -------<-- -acu------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- UAGACGCGAU AGAG-ACCA- ----GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauagca gugaaaacu- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--ac- 2101 caaucaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -cugaaguuu 2701 gcc-ccCCCG AA-ACCCAaG CG-AGCUACU UGC-GAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ------uua) ---------- 2821 -GAGCGAA-C CC-GUCUCU( GUUGCAA-A) AGAG-UGGGA --CGACUCG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UACCUguGUG AA-ACG-AAU 2941 (-CUAA)GUU CU-CC-CUUA AUCC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuucccccc 3121 ggga-----u acacccagaa ccacaau--- ---------- ---------- ---------- 3181 ----gagau- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GA-U -UAAG-AGUU AUUUA--AU- GG-AG(GGUA 3481 CAG)CUCCAU UA-AA----- -aAAGG(ACA -CAA)CCU-c gacua-g-cg -ga-UAA--- 3541 --auc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -ACUGU-G GGC(CUUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UCC-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ga ugaa--ucc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ucaga aACAG-GU|- CA-ACCUAU- ---------- 4501 ---------- ---------- (gaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAAGA UU-AUGC-UA 4681 AA|AUAAGUA -ACUC-GGG- g--------- (-ccacauca ---------- ---------- 4741 ---------- -----)---- ----c-|ccc ucuaacgGCG Caa--gcuua c|----a--- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(cua-u a-----)--- ----agag-| 6541 |---CGAU-U A--AAAUCUG -UGAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a ccACGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (----aaauc aagcaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------c cag)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAUc)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCC 7261 UA-------- ---------- -------ACU GUCUCUCACA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUC CC-CG(U-AC AAAAG)CGGG GAU----GUG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--caacg gcc--ac--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cgcg ----aaccua caaac-caac 7561 ca-cuggggc cgcuacuaau -cgcaaggca ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-cc -ga--cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAACAGACC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacacc ucuuu----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-gag( -ccaccc--- )cucaa-agu -gcuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|---ga-cc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUCACAG |C-GCA-A-U CCCCCUCAAG 9061 AG(C--CCCU )AUCGACAGG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----aacc- 9301 >--------- ---------- --A-CUC-UC CC--(CAGU- AC(-GAAA)G GACC-)-GGA 9361 A--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uacau> 9541 ---------- ---------- gcac-gccuu cc-------- ---------- -------cuc 9601 ---------- --uaaauagu (gaaacc--a acuga)a-cu -gu-gaa-ga g--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 cu-(-agaaa ---)-agga- cca~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.gallu 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Gallus gallus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Gallus gallus. ORGANISM Mitochondria Gallus gallus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X52392 DE Chicken mitochondrial genome KW 12S ribosomal RNA; 16S ribosomal RNA; ATPase 6; ATPase 8; OS Mitochondrion Gallus gallus OC Mitochondria; Metazoa; Chordata; Vertebrata; Tetrapoda; Aves; OC Galliformes. RA Desjardins P., Morais R.; RT "Sequence and gene organization of the chicken mitochondrial RT genome: A novel gene order in higher vertebrates"; RL J. Mol. Biol. 212:599-634(1990). FT RRNA 1297 2272 12S ribosomal RNA FT RRNA 2346 3966 16S ribosomal RNA SQ Sequence 16775 BP; 5075 A; 5444 C; 2266 G; 3990 T; 0 other; BASE COUNT 540 a 454 c 297 g 330 t 9154 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~CUUG C--------- ----CCCCCC 301 |UCU--AGC| CCG------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 CAA(AACA)U Uauaaau--- -u-------- ---------- ---------- ---------- 901 ------(--- --)------- |-gu-ccCA- -GUAU-A(-G GCGA)UAGAA -Aagac---- 961 -------<-- --uaccc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---|------ 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCGCAAU AGAG-GCUA- -ACUGUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauagca augaaaacca ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--ac- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugag->---- --(------) ---------- ---------- -cuaaaguuu 2701 gcc-uuCCCG AA-ACCCAaG CG-AGCUACU UGC-GAG-CA GCUA------ a--------- 2761 -(-------- ---------- ---------- ---------- -----aauu) ------u--- 2821 -GAGCGAA-C CC-GUCUCU( GUUGCAA-A) AGAG-CGGGA --UGACUUG- CCAGUAG-AG 2881 GU(G-AAAA) GCC-UACC-G A-GCUGGGUG AUAGCU-GGU UACCU--GUC AA-ACG-AAU 2941 (-CUAA)GUU CC-CC-CUUA ACCC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -acccccuaa 3121 agac-----a cccaccuuug ucaaccu--- ---------- ---------- ---------- 3181 ----ugagaa cguugg---- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GG-U -UAAG-AGCA AUUCG--AU- GG-GG(-GUA 3481 CAG)CUCCAU CG-AA----- -aAAGA(ACA -CAA)CCU-c cuccA-G-cg -ga-UAA--- 3541 --uaa----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -ACUGU-G GGC(CUUCAA 3781 GC-A)-GCCA -CCAA|C(A- AA)A|GAGUG C(--GUCAAA )GC|-UCC-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uu uGAc--ucc| C--U-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----accaa aGCAG-GU|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gaca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA UCAAUGC-UA 4681 AA|AUGAGUA -AUCU-GGA- ---------- (-accua--- ---------- ---------- 4741 ---------- -----)---- ------|UCC UccuacgGCG Uaa--acuua c|----au-- 4801 ---------- ---------- ----(-uaau ac)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-a 4921 cucaacuuau acccccacac uaacaagcaa uacguauucc ucaa------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAAGCC- -(AACCCA)G G|AGCGC--- ----(cca-c ------)--- ----agga-| 6541 |---UGAU-U A--AAACCUA -CAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c caAAGACC|C GA---CUG-U UU(CCCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------uaa caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------cccc aaa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCG(-U AAAU-)UGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCCUGUA GGUA-AU-CU ----AUGAAA 7321 UU|A|GUAUU CC-CG(U-GC AAAAA)CGAG AAU----GUG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUU--AAA AU|--C-acg acc--ac--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cuua ---caaccuu acaca-gccc 7561 ca-cuggguc cacccacaca -uaaacccc- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-uc -ga--cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAAAAUC- )CUCC-AA|A |c|cc---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- --------ac 8341 agaccacaac ucuuc----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gac( -caacuc--- )cucaa-agu -accaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----aacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAGCAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUCCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AA-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ------gac- 9301 >--------- ---------- --A-CUC-CU CC--(UAGU- AC(-GAAA)G GACC-)GGAG 9361 A--AG-- gggguca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---cacuga> 9541 ---------- ---------- gcac-acccc aacc------ ---------- -------uuc 9601 ---------- --uaagcaau (gaauac--a acuca)a-cu -gc-caa-ga a--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 cu-(-agaaa ---)-aggau cca~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.hoazi 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Opisthocomus hoazin. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Opisthocomus hoazin. ORGANISM Mitochondria Opisthocomus hoazin. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87864 LOCUS MTOHOA16S 1195 bp DNA VRT 05-DEC-1995 DEFINITION O.hoazin mitochondrial gene for 16S ribosomal RNA. ACCESSION X87864 NID g1103606 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE hoatzin. ORGANISM Mitochondrion Opisthocomus hoazin Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Opisthocomiformes; Opisthocomidae; Opisthocomus. REFERENCE 1 (bases 1 to 1195) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1195) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1195) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103606 FEATURES Location/Qualifiers source 1..1195 /organism="Opisthocomus hoazin" /mitochondrion rRNA 1..1195 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 403 a 300 c 226 g 265 t 1 others ORIGIN BASE COUNT 403 a 300 c 226 g 265 t 9581 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~auga agca>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -CAAG-AGCA AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAA)UCU-c cugcA-G-cg -ga-UAA--- 3541 --aua----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -ACUGU-G GGC(CUUCAA 3781 GC-A)-GCCA -UCAA|A(A- AA)-|GAAUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ac -gac--ucc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----caagcu aGCAG-GN|- UA-ACCUAU- ---------- 4501 ---------- ---------- (caacc--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 AA|AUGAGUA -ACUA-AGG- agg------- (accucc--- ---------- ---------- 4741 ---------- -----)---- --ccuc|ucc uc-ucgaGCG Cac--gcuua c|----ac-- 4801 ---------- ---------- ----(--acc c-)---|--- ---guu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-- 4921 -cuaacaaua cuucaacacc -aacaagc-c caaguauuaa caca------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 -u-UAACCCG -(CCCACA)G G|AGCGC--- ----(cuacu a-----)--- ----gaaa-| 6541 |----GAU-U A--ACAUCUG -UAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (--------a aaccaa)--- ---------- 6901 ------GUA- UUG-GAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------cc-- aau)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAAGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUACA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUC CC-UG(U-GC AAAAG)CAGG GAU----UAA CCCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUG--AAA AU|--C-agc uac--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- accccucaca aacuugaacc 7561 uauuaggucu acccuuauua aagugcu--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-u-au -a---cA-UU UUUCGGUUG( 8161 GGG)CG-AC- U|UUGGAG(- --------AA AAACGAAUC- )CUCC-AA|A |c|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agacuacacc ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- aucaa-gag( -caacuu--- )cucaa-cau -acuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----aacc AGACC-CAGU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCCCCGAG 9061 AG(C--UCAU )AUCGACAGG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----uuaa- 9301 >--------- ---------- --A-CUU-CC CC--(UAGU- AC(-GAAA)G GACC-)GGAG 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----cacaa> 9541 ---------- ---------- gcau-gccuc ccc------- ---------- -------uua 9601 ---------- --caaauaau (gaccuc--a acuua)a-uu -au-caa-aa a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-agggc ccagcuagcg uggcagagcu cggcaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.occid 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Pelecanus occidentalis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Pelecanus occidentalis. ORGANISM Mitochondria Pelecanus occidentalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L33383 LOCUS PCAMTDG 1211 bp DNA circular VRT 11-MAY-1995 DEFINITION Pelecanus occidentalis mitochondrial 16S ribosomal RNA (16S rRNA) gene, 3' end. ACCESSION L33383 KEYWORDS 16S ribosomal RNA. SOURCE Mitochondrion Pelecanus occidentalis DNA. ORGANISM Mitochondrion Pelecanus occidentalis Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Pelecanoidea; Pelecanidae; Pelecaninae. REFERENCE 1 (bases 1 to 1211) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559224 FEATURES Location/Qualifiers source 1..1211 /organism="Mitochondrion Pelecanus occidentalis" /mitochondrion /sequenced_mol="DNA" rRNA <1..1211 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" BASE COUNT 397 a 325 c 243 g 246 t ORIGIN BASE COUNT 397 a 325 c 243 g 246 t 9564 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~augu gaug>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-G -CAAG-GGCA GUUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AA----- -aAAGA(GCA -CAA)UCU-c uccuA-G-cg -ga-UAA--- 3541 --ccc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- --UUGU-A GGC(CCUUAA 3781 GC-A)-GCCA -CCCA|U(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|cc ugac--ucc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccacu aACAG-GC|- CA-ACCUAU- ---------- 4501 ---------- ---------- (aaca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA CUACUGC-UA 4681 AA|AUAAGUA -AcCC-GGG- ---------- (gcaa----- ---------- ---------- 4741 ---------- -----)---- ------|ccc uc-uagaGCG Cga--cguua c|----ac-- 4801 ---------- ---------- ----(-cacc au)---|--- ---guu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-c 4921 cauguuuaau guuacaaccc aacaggacaa accauuaaca cuccac---- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --c-g--|-- 6481 -u-UAGCCC- -(GACACA)G G|AGCGC--- ----(ccaca a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (--------c aaccaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------auc a-u)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 Uguaugaaug gcuaaacgag gucuua-GCU GUCUCUUGCA GAUA-AU-CG ----GUGAAA 7321 UU|G|AUCUC CC-UG(U-GC AAAAG)CAGG AAU----AAA CCCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-agc ggc--ca--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---ccccacc uagaaccuaa 7561 gccuacuagg cauacuauua cuccaaaaac auu------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ggcc-cg -----cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAACGAACC- )CUCC-AA|A |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacacc ucuug----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accaa-gag( -caaccc--- )cucaa-cgu -acuaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----aacc CGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGACCAAU- |GGA-CCAAG CUACCC|CAG G|GGUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acga- 9301 >--------- ---------- --A-CUU-UC CC--(CAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uauag> 9541 ---------- ---------- gcac-gccuu ua-------- ---------- -------ucc 9601 ---------- -ccaaguaau (gcagcc-ca acuaa)a-uu -acuuaaagg a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- -ccgcuagcg uggcagagcu ugguaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.nebou 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Sula nebouxii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Sula nebouxii. ORGANISM Mitochondria Sula nebouxii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L33395 LOCUS ULAMTDG 1205 bp DNA circular VRT 11-MAY-1995 DEFINITION Sula nebouxii mitochondrial 16S ribosomal RNA (16S rRNA) gene, 3' end. ACCESSION L33395 KEYWORDS 16S ribosomal RNA. SOURCE Mitochondrion Sula nebouxii DNA. ORGANISM Mitochondrion Sula nebouxii Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconii; Suloidea; Sulidae. REFERENCE 1 (bases 1 to 1205) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559255 FEATURES Location/Qualifiers source 1..1205 /organism="Mitochondrion Sula nebouxii" /mitochondrion /sequenced_mol="DNA" rRNA <1..1205 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" BASE COUNT 409 a 333 c 216 g 247 t ORIGIN BASE COUNT 409 a 333 c 216 g 247 t 9570 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aug aacg>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-U -CAAG-AGCA AUUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AA----- -aAAGA(ACA -CAG)CCU-c cuauA-G-cg -ga-UAA--- 3541 --ccc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ----GU-G GGC(CUUAAA 3781 GC-A)-GCCA -UCAA|U(A- AA)-|GAAUG C(--GUCAAA )cc|-uc--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|cg uGAc--ucc| C--U-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccccu aACAG-GC|- CA-ACCUAU- ---------- 4501 ---------- ---------- (guaca--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGCA UUAAUGC-UA 4681 AA|AUAAGUA -ACUA-GGc- ---------- (uuacacc-- ---------- ---------- 4741 ---------- -----)---- ------|ccc uc-uuaaGCG Caa--acuua c|----au-- 4801 ---------- ---------- ----(--ccu ac)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-a 4921 cccccaacca auacuacuaa acaccaacaa gacuccguau uaaaauaccc aaaua----- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAAUCC- -(AACCCA)G G|AGCGC--- ----(cuacu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -UAAA-AGGA ACAUGGCAAC ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAGGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (--------c aaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------au ac-)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCUCA(-U AAAU-)UGAG AC|CU-GUAU GAAUGGCUAA A-CGAGGCCC 7261 UA-------- ---------- -------ACU GUCUCUUACA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-CG(U-GC AAAAG)CAGG AAU----GAA CCCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-aau gac--ca--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---ccccaca caaacuaacc 7561 uaccaggcuu aacuauccua cacacu---- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ggcc-ca -----cA-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAGCAAACC- )CUCC-AA|A |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacccg ucuu------ ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------g accua-gag( -caaccc--- )cucaa-cgu -gcuaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|----aacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGACCAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCGU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----cuuau- 9301 >--------- ---------- --A-CUU-UC CC--(CAGU- AC(-GAAA)G GACC-)GGUA 9361 A--AG-- ggggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----cacaa> 9541 ---------- ---------- gcac-gcccc cc----uuca aaguaaugaa cccaacuaaa 9601 ---------- --uuacaaaa (gaagcacca cuuac)u-uu -ua-uca-cc ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|-c 9961 cu-(-agaaa ---)-agga- -cagcuagcg uggcaaagcu ugguaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.nov.1 10775 bp RNA RNA 18-JUN-1997 DEFINITION Mitochondria Dromaius novaehollandiae.; . ACCESSION U76038 KEYWORDS . SOURCE Mitochondria Dromaius novaehollandiae. ORGANISM Mitochondria Dromaius novaehollandiae. REFERENCE 1 (bases 1 to 1595) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE conflicts between molecular and morphological data sets Phylogenetic relationships of the ratite birds: resolving JOURNAL SYSTEMATICS: Academic Press; New York (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 1595) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U76038 BASE COUNT 563 a 375 c 293 g 364 t 9180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- -----ccucc 301 |UCU--AGC| UCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----aaac 841 uaa(aaca)u ucuau----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |aua-cuUA- -GUAC-A(-G GCGA)UAGAA -Aaguc---- 961 -------<-- -acu------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-ACCU- -cc-GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauaaua gugaaaaag- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaua--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -cuuaagcuu 2701 gcc-acCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----ccau) ---------- 2821 -GAGCGAA-C CC-GUCUCU( GUAGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUA AA-ACG-AAU 2941 (-CUAA)GUU CA-CC-CCUA AUu-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuuccccuc 3121 ccgg-----a ca-------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------c uuaauuagcc uuauauauga ggag>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-U -UAGG-AGAA AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -gaAGA(AUA -CAU)UCU-a cacca-g-ag -gg-UAA--- 3541 --cuc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-A GGC(CCUAAA 3781 GC-A)-GCCA -CCAU|U(A- GA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca ggaa--ccc| c--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----accacu aACAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gaua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 AA|AUGAGUA -AUUA-GAA- g--------- (auc------ ---------- ---------- 4741 ---------- -----)---- ----c-|uuc ucu-caaGCG Cag--gcuua c|----au-- 4801 ---------- ---------- ----(--cua ac)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-c 4921 cgacuuauau --cuacacca --acaagaac acauauagaa uuac------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 -u-UAACCC- -(AACUCA)G G|AGCGC--- ----(uua-u u-----)--- ----agaa-| 6541 |---AGAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c caAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------uaa caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AUG GACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUU--AAA AU|--cgagg acc--a---| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---aaccuac ugaggcucac 7561 uuuauaugca aua------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-uc -cc--uA-UU UUUCGGAUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|a----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------uaa 8341 gagccauaaa ccuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gaa( -ccacac--- )cucaa-agu -acuaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|---aa-cc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|CG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUC---- --|-|<---- ---------- ---------- ---------- -----cagc- 9301 >--------- ---------- --A-CUC-UU CC--(CAGU- CC(-GAAA)G GACC-)GGAA 9361 A--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uaaauau> 9541 ---------- ---------- gcac-gccuu cc-------- ---------- -------cuc 9601 ---------- --uaauuagu (gaaauc--a acuca)a-cu -aa-gaa-aa a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- au~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.nov.2 10775 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondrion Dromaius novaehollandiae.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 4 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondrion Dromaius novaehollandiae. ORGANISM Mitochondrion Dromaius novaehollandiae. REFERENCE 1 (bases 1 to 2634) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE of the mitochondrial ribosomal genes Ratite phylogeny and biogeography inferred from DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2634) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ002924 BASE COUNT 561 a 372 c 294 g 369 t 9179 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- -----ccucc 301 |UCU--AGC| UCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----aaac 841 uaa(aaca)u ucuau----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |aua-cuUA- -GUAC-A(-G GCGA)UAGAA -Aaguc---- 961 -------<-- acu------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-ACCU- -cc-GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauaaua gugaaaaag- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaua--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -cuuaagcuu 2701 gcc-acCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----ccau) ---------- 2821 -GAGCGAA-C CC-GUCUCU( GUAGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUA AA-ACG-AAU 2941 (-CUAA)GUU CA-CC-CCUA AUu-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuuccccuc 3121 ccgg-----a ca-------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------c uuaauuagcc uuauauauga ggag>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-U -UAGG-AGAA AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -gaAGA(AUA -CAU)UCU-a cacca-g-ag -gg-UAA--- 3541 --cuc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-G GGC(CCUAAA 3781 GC-A)-GCCA -CCAU|U(A- GA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca ggaa--ccc| c--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---accaucu aACAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gaua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 AA|AUGAGUA -AUUA-GAA- g--------- (auc------ ---------- ---------- 4741 ---------- -----)---- ----c-|uuc ucu-caaGCG Cag--gcuua c|----au-- 4801 ---------- ---------- ----(--cua ac)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-c 4921 cgacuuauau --cuacacca --acaagaac acauau-caa uuac------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 -u-UAACCC- -(AACUCA)G G|AGCGC--- ----(uua-u u-----)--- ----agaa-| 6541 |---AGAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c caAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------uaa caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AUG GACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--cgagg acc--a---| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---aaccuac ugaggcucac 7561 uuuauaugca auaa------ ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-uc -cc--uA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|a----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------uaa 8341 ga-ccauaaa ccuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gaa( -ccacac--- )cucaa-agu -acuaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|---aa-cc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----cagc- 9301 >--------- ---------- --A-CUC-UU CC--(CAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uaaauau> 9541 ---------- ---------- gcac-gccuu cc-------- ---------- -------cuc 9601 ---------- --uaauuagu (gaaauc--a acuca)a-cu -aa-gaa-ga a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- uua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.cam.1 10775 bp RNA RNA 10-JUL-1997 DEFINITION Mitochondria Struthio camelus.; 12S rRNA; 16S rRNA; adenine triphosphatase; ATPase; COI gene; complete; control region; cytochrome b oxidase; cytochrome c oxidase; mitochondrial; NADH. ACCESSION Y12025 KEYWORDS 12S rRNA; 16S rRNA; adenine triphosphatase; ATPase; COI gene; complete; control region; cytochrome b oxidase; cytochrome c oxidase; mitochondrial; NADH. SOURCE Mitochondria Struthio camelus. ORGANISM Mitochondria Struthio camelus. REFERENCE 1 (bases 1 to 16591) AUTHORS Harlid,A., Janke,A. and Arnason,U. TITLE The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds JOURNAL Mol. Biol. Evol. 14, 754-761 (1997) STANDARD No information REFERENCE 2 (bases 1 to 16591) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (24-MAR-1997) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information REFERENCE 3 (bases 1 to 16591) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (10-JUL-1997) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y12025 BASE COUNT 549 a 408 c 281 g 341 t 9196 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- -----g-ccc 301 |UCU--AGC| UCA------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- -------ucc acccacuuga acaacccacu aaacucaaaa 601 acu------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 -aa(aaca)u uuucc----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |cua-cuuA- -GUAU-A(-G GCGA)UAGAA -Aaguu---- 961 -------<-- ---ac-u--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-AUAU- ccuuGUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauaaua augaaaacca ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ------aa-G C-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--ac- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-auCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uuau) ------u--- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UCAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUG AA-AAG-AAU 2941 (-CUAA)GUU CA-CU-CCUA ACUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -acccc-ucc 3121 cggc-----a uccac---u- --aaccu--- ---------- ---------- ---------- 3181 ----u----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ----aaugag gaa->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-C -UAGG-AACU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAA)CCU-c cauua-g-ag -gg-UAA--- 3541 --ccc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-U GGC(CCUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|u- -gac--ccc| c--u-ac|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----accacu aACAG-GC|- CA-AUCUAU- ---------- 4501 ---------- ---------- (gacc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA CUUAUGC-UA 4681 AA|AUGAGUA -AUUA-GAA- ---------- (auuc----- ---------- ---------- 4741 ---------- -----)---- ------|uuc uc-uaaaGCG Caa--gcuua c|----au-- 4801 ---------- ---------- ----(--uau au)---|--- ---auu---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)<-c 4921 cuaacuuaua uuuacacccc uacuagaaca aauauaaaac cac------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(cuauu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa uaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------u- aau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGGG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 CA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AUA AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AC|--c-aag gau--caa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ugca --------cu cccacccaaa 7561 ccuacuaagg cucaccacuc cugcaaccaa cu-------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ga-u-cc -u---cG-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaac ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gag( -ccacuc--- )cucaa-agu -gccaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|----gacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----cuau- 9301 >--------- ---------- --A-CUU-UU CU--(CAGU- AC(-GAA-)G GACC-)AGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----caaaa> 9541 ---------- ---------- gcac-gccuc ccc------- ---------- -------gcc 9601 ---------- --uaauuagu (gaaaac--a ucuca)a-cu -aa-caa-gg a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.cam.2 10775 bp RNA RNA 18-JUN-1997 DEFINITION Mitochondria Struthio camelus.; . ACCESSION U76041 KEYWORDS . SOURCE Mitochondria Struthio camelus. ORGANISM Mitochondria Struthio camelus. REFERENCE 1 (bases 1 to 1579) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE conflicts between molecular and morphological data sets Phylogenetic relationships of the ratite birds: resolving JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: Academic Press; New York (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1579) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U76041 BASE COUNT 550 a 403 c 281 g 345 t 9196 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- -----g-ccc 301 |UCU--AGC| UCA------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- -------ucc acccacuuga acaacccacu aaacucaaaa 601 acu------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 -aa(aaca)u uuucc----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |cua-cuuA- -GUAU-A(-G GCGA)UAGAA -Aaguu---- 961 -------<-- ---ac-u--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-AUAU- ccuuGUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauaaua augaaaacca ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ------aa-G C-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--ac- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-auCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uuau) ------u--- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UCAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUG AA-AAG-AAU 2941 (-CUAA)GUU CA-CU-CCUA ACUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -acccc-ucc 3121 cggc-----a uccac---u- --aaccu--- ---------- ---------- ---------- 3181 ----u----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ----aaugag gaa->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-C -UAGG-AACU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAA)CCU-c cauua-g-ag -gg-UAA--- 3541 --ccc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-U GGC(CCUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|u- -gac--ccc| c--u-ac|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----accacu aACAG-GC|- CA-AUCUAU- ---------- 4501 ---------- ---------- (gacc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA CUUAUGC-UA 4681 AA|AUGAGUA -AUUA-GAA- ---------- (auuc----- ---------- ---------- 4741 ---------- -----)---- ------|uuu uu-uaaaGCG Caa--gcuua c|----au-- 4801 ---------- ---------- -------uau au)---|--- ---auu---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)<-c 4921 cuaacuuaua uuuacacccc uacuagaaca aauauaaaac cac------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(cuauu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUUUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa uaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------u- aau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGGG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 CA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AUA AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUU--AAA AC|--c-aag gau--caa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ugca --------cu cccacccaaa 7561 ccuacuaagg cucaccacuc cugcaaccaa ccu------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gacu-cc -u---cG-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaac ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gaa( -gcacuc--- )cucaa-agu -gccaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|----gacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----cuau- 9301 >--------- ---------- --A-CUU-UU CU--(CAGU- AC(-GAAA)G GACC-)AGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----caaaa> 9541 ---------- ---------- gcac-gccuc ccg------- ---------- --------cc 9601 ---------- --uaauuagu (gaaaac--a ucuca)a-cu -aa-caa-gg a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.cam.3 10775 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondria Struthio camelus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 2 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondria Struthio camelus. ORGANISM Mitochondria Struthio camelus. REFERENCE 1 (bases 1 to 2613) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE of the mitochondrial ribosomal genes Ratite phylogeny and biogeography inferred from DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2613) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ002922 BASE COUNT 550 a 401 c 281 g 345 t 9198 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- -----g-ccc 301 |UCU--AGC| UCA------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- -------ucc acccacuuga acaacccacu aaacucaaaa 601 acu------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 -aa(aaca)u uuucc----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |cua-cuuA- -GUAU-A(-G GCGA)UAGAA -Aaguu---- 961 -------<-- ---acu---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-AUAU- ccuuGUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauaaua augaaaacca ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ------aa-G C-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--ac- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-auCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uuau) ------u--- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UCAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUG AA-AAG-AAU 2941 (-CUAA)GUU CA-CU-CCUA ACUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -acccc-ucc 3121 cggc-----a uccac---u- --aaccu--- ---------- ---------- ---------- 3181 ----u----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ----aaugag gaa->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-C -UAGG-AACU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAA)CCU-c cauua-g-ag -gg-UAA--- 3541 --ccc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-U GGC(CCUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|u- -gac--ccc| c--u-ac|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----accacu aACAG-GC|- CA-AUCUAU- ---------- 4501 ---------- ---------- (gacc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA CUUAUGC-UA 4681 AA|AUGAGUA -AUUA-GAA- ---------- (auuc----- ---------- ---------- 4741 ---------- -----)---- ------|uuu uunuaaaGCG Caa--gcuua c|----au-- 4801 ---------- ---------- ----(--uau au)---|--- ---auu---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)<-c 4921 cuaacuuaua uuuacacccc uacuagaaca aauauaaaac cac------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(cuauu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUUUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa uaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------u- aau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGGG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 CA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AUA AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AC|--c-aag gau--caa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ugca --------cu cccacccaaa 7561 ccuacuaagg cucaccacuc cugcaaccaa cu-------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ga-u-cc -u---cG-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaac ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gag( -ccacuc--- )cucaa-agu -gccaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|----gacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----cuau- 9301 >--------- ---------- --A-CUU-UU CU--(CAGU- AC(-GAAA)G GACC-)AGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----caaaa> 9541 ---------- ---------- gcac-gccuc ccc------- ---------- -------gcc 9601 ---------- --uaauuagu (gaaaac--a ucuca)a-cu -aa-uaa-gg a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.cam.4 10775 bp RNA RNA 02-JUL-1998 DEFINITION Mitochondrion Struthio camelus.; . 1 of 3. ACCESSION AF069429 U837 9 KEYWORDS . 1 of 3. SOURCE Mitochondrion Struthio camelus. ORGANISM Mitochondrion Struthio camelus. REFERENCE 1 (bases 36 to 1001) AUTHORS ., Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 9193) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Primers for a PCR-based approach to complete mitochondrial genome sequencing JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 36 to 1001) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H. C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Musem of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information REFERENCE 4 (bases 1 to 9193) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Direct Submission JOURNAL Submitted (02-JUN-1998) Museum of Zoology and Department of Biology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069429 BASE COUNT 551 a 405 c 280 g 342 t 9197 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- -----g-ccc 301 |UCU--AGC| UCA------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- -------ucc acccacuuga acaacccacu aaacucaaaa 601 acu------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 -aa(aaca)u uuucc----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |cua-cuuA- -GUAU-A(-G GCGA)UAGAA -Aaguu---- 961 -------<-- ----acu--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-AUAU- ccuuGUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauaaua augaaaacca ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ------aa-G C-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--ac- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-auCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uuau) ------u--- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UCAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUG AA-AAG-AAU 2941 (-CUAA)GUU CA-CU-CCUA ACUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -acccc-ucc 3121 cggc-----a uccac---u- --aaccu--- ---------- ---------- ---------- 3181 ----u----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ----aaugag gaa->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-C -UAGG-AACU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAA)CCU-c cauua-g-ag -gg-UAA--- 3541 --ccc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-U GGC(CCUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|u- -gac--ccc| c--u-ac|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----accacu aACAG-GC|- CA-AUCUAU- ---------- 4501 ---------- ---------- (gacc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA CUUAUGC-UA 4681 AA|AUGAGUA -AUUA-GAA- ---------- (auuc----- ---------- ---------- 4741 ---------- -----)---- ------|uuc uc-uaaaGCG Caa--gcuua c|----au-- 4801 ---------- ---------- ----(--uau au)---|--- ---auu---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)<-c 4921 cuaacuuaua uuuacacucc uacuagaaca aauauaaaac cac------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UAACCC- -(AACUCA)G G|AGCGC--- ----(cuauu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa uaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------u- aau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGGG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 CA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AUA AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AC|--c-aag gau--caa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ugca --------cu cccacccaaa 7561 ccuacuaagg cucaccacuc cugcaaccaa cu-------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ga-u-cc -u---cG-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaac ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gag( -ccacuc--- )cucaa-agu -gccaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|----gacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----cuau- 9301 >--------- ---------- --A-CUU-UU CU--(CAGU- AC(-GAAA)G GACC-)AGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----caaaa> 9541 ---------- ---------- gcac-gccuc ccc------- ---------- -------gcc 9601 ---------- --uaauuagu (gaaaac--a ucuca)a-cu -aa-caa-gg a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.tao 10775 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondria Tinamus tao.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 1 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondria Tinamus tao. ORGANISM Mitochondria Tinamus tao. REFERENCE 1 (bases 1 to 2635) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE of the mitochondrial ribosomal genes Ratite phylogeny and biogeography inferred from DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2635) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ002921 BASE COUNT 538 a 370 c 286 g 386 t 9195 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ug c--------- ----c-aa-c 301 |UCU--AGC| UCA------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- --------aa ccucuccaua cagacucaaa aauucuuuau 601 gaaaca---- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----auu- 841 -aa(aaca)u ucucu----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uca-cuuA- -GUAU-A(-G GCGA)UAGAA -Aaguu---- 961 -------<-- ---auu---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-ACU-- --g-GUACC( -GUAA-)GGG ---AAA-GU- 1681 UGaaauaaua augaaaacua ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ------aa-g c-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaacu 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaua--cc- 2101 caagcauaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-guCCCG AA-ACCUAcG CG-AGCUACU CAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----ucua) ------u--- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-GCUAGGUG AUAGCU-GGU UGCCU--GCG AA-ACG-AAU 2941 (-UUAA)GUU CA-CC-CCUA AAu-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 --------cu cccuccaggg ccccuccacu aaccuuaacg ugau>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAGG-AGCU ACUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -ccAGG(AUA -CAA)CCU-c cacaa-g-ag -gg-UAA--- 3541 --uac----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---UGU-A GGC(CUUCAA 3781 GC-A)-GCCA -UCAA|C(C- AA)-|GAGUG C(--GUCAAA )GC|-UCC-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|aa agaa--ccc| c--u-au|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----uuuau aGCAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gauu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUUAUGC-UA 4681 AA|AUGAGUA -AUUU-GAA- ga-------- (uuuu----- ---------- ---------- 4741 ---------- -----)---- ---uc-|uuc uc-ucagGCG Caa--accua c|----au-- 4801 ---------- ---------- ----(--uua aa)---|--- ---auu---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)<-u 4921 uuaauuuaua cuauuauuac acaagaacaa auauucaacc cac------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UACCCC- -(AACUCA)G G|AGCGC--- ----(cucaa a-----)--- ----agaa-| 6541 |---CGAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (--------c ccucaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------c--a uu-)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)AGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CU-UG(U-GC AAAAG)CAAG GAU----ACU AUCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-uaa ggu--caa-| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -----accug cacccau--- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ga-c-cu -u---cA-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------CA CAAACAAAC- )CUCC-AA|A |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 ggaccaccaa uccua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accca-gag( -caaccc--- )cucaa-agu -gcuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|----aacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUCAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----uagu- 9301 >--------- ---------- --A-CUG-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 C--AG-- gaggccc-au gu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uauaua> 9541 ---------- ---------- acac-gccuc cc-------- ---------- -------uuc 9601 ---------- --caauuagu (gaauac--a acuca)a-cu -aa-caa-ga a--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 cu-(-agaua ---)-agga- -ua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.benne 10775 bp RNA RNA 18-JUN-1997 DEFINITION Mitochondria Casuarius bennetti.; . ACCESSION U76037 KEYWORDS . SOURCE Mitochondria Casuarius bennetti. ORGANISM Mitochondria Casuarius bennetti. REFERENCE 1 (bases 1 to 1589) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE conflicts between molecular and morphological data sets Phylogenetic relationships of the ratite birds: resolving JOURNAL SYSTEMATICS: Academic Press; New York (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 1589) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U76037 BASE COUNT 557 a 381 c 295 g 356 t 9186 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- ------cccc 301 |UCU--AGC| UCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------AAC 841 UAA(AGCA)U Ucucu----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |gca-ccUA- -GUAU-A(-G GCGA)UAGAA -Aaguu---- 961 -------<-- -acu------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCGAU AGAG-ACCC- -cc-GUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauaaua gugaaaaac- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -cuuaagcuu 2701 gcc-auCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uaau) ---------- 2821 -GAGCGAA-C CC-GUCUCU( GUAGCAA-A) AGAG-UGGGA --AGACUUG- UCAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUA AA-AUG-AAU 2941 (-CUAA)GUU CA-CC-CCUA AUCU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uccc-cccc 3121 cgg------a ca-----u-- --caa-u--- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -----cagcc uaaaauauga ggaa>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-C -UAGG-AGCA AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(AUA -CAA)UCU-a uaaua-g-ag -gg-UAA--- 3541 --uuc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-A GGC(CUUUAA 3781 GC-A)-GCCA -UCAA|U(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca ggac--ccc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----aucacu aACAG-GC|- CA-ACCUAU- ---------- 4501 ---------- ---------- (gaua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UCAAUGC-UA 4681 GA|AUGAGUA -AUUA-GAA- g--------- (-ccc----- ---------- ---------- 4741 ---------- -----)---- ----c-|uuc ucu-uaaGCG CAA--gcuua c|----ac-- 4801 ---------- ---------- ----(--cua ac)---|--- ---------- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-c 4921 caacuuauau -caa-cacac caacaagaac aaguauuaaa ccgc------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 -u-UAACCC- -(AACCCA)G G|AGCGC--- ----(uua-c u-----)--- ----agaa-| 6541 |---AGAU-U A--AAAUUUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c cuAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------uag caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uau)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CC--G(U-GC AAAAG)CAGG AAU----AUG AGCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUU--AAA AU|--caagg acc--a---| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---aaccuac caagguucac 7561 uucaucugca gcaa------ ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-uc -cc--cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAGAAGAUC- )CUCC-AA|A |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccauuaa ucuug----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gaa( -cuacac--- )cucaa-agu -acuaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|---aa-cc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CG -CC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----uaac- 9301 >--------- ---------- --A-CUC-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 U--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uaaaaau> 9541 ---------- ---------- gcac-gccuu cc-------- ---------- -------cuc 9601 ---------- --uaauuagu (gaaaac--a acuua)a-cu -aa-gaa-ga a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.perdi 10775 bp RNA RNA 18-JUN-1997 DEFINITION Mitochondria Nothoprocta perdicaria.; . ACCESSION U76039 KEYWORDS . SOURCE Mitochondria Nothoprocta perdicaria. ORGANISM Mitochondria Nothoprocta perdicaria. REFERENCE 1 (bases 1 to 1581) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE conflicts between molecular and morphological data sets Phylogenetic relationships of the ratite birds: resolving JOURNAL SYSTEMATICS: Academic Press; New York (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 1581) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U76039 BASE COUNT 549 a 358 c 285 g 389 t 9194 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ug c--------- ------cuac 301 |UCU--AGC| UCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<-aaacu ccuucauaua agcacaaaaa uucu--uuau 601 gaaa------ ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----uaac 841 uaa(aaca)u ucucu----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uca-cuUA- -GUAU-A(-G GCGA)UAGAA -Aagua---- 961 -------<-- -auu------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GACGCAAU AGAG-ACUC- ----GUACC( -GUAA-)GGG ---AAA-GU- 1681 UGaaauaaua gugaaaacu- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaua--cc- 2101 caagcauaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugca->---- --(------) ---------- ---------- -uuuuagcuu 2701 guc-auCCCG AA-ACCUAcG CG-AGCUACU CAC-AAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----uauau) ---------- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-GCUAGGUG AUAGCU-GGU UGCCU--GCG AA-ACG-AAU 2941 (-UUGA)GUU CA-CC-CCUA AAuc<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -ucccuccag 3121 gacc-----c uuauaccaac cuuaa-c--- ---------- ---------- ---------- 3181 ----gugau- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAGG-AGCU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -cUAGA(ACA -CAA)UCU-c cacaa-g-ag -gg-UAA--- 3541 --uau----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---UGU-A GGC(CUUUAA 3781 GC-A)-GCCA -CCAA|C(U- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|aa agaa--ccc| c--u-au|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccaau aGCAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gauu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUUAUGC-UA 4681 AA|AUGAGUA -AUUU-GAA- g--------- (acuua---- ---------- ---------- 4741 ---------- -----)---- ----c-|uuc ucu--aaGCG Caa--accua c|----au-- 4801 ---------- ---------- ----(--uuu aa)---|--- ---auu---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)<-u 4921 ugacuuauau uacaaucac- --acaagaac aaguauuuaa ccaa------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 -u-UACCCC- -(GACUCA)G G|AGCGC--- ----(cua-a a-----)ac- ----agag-| 6541 |---CGAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (--------c ccacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aua)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)AGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----AUGAAA 7321 UU|G|AUCUC CU-UG(U-GC AAAAG)CAAG GAU----AAC UCCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--cuaag guc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ugca ---aac-aca -acua-aacc 7561 -a-aaagguc cacu-acau- augca-ccca ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-a-cc -uu--cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------UA UAGACAAAC- )CUCC-AA|A |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 gggccacaua cccug----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuua-gag( -caaccc--- )cucaa-agu -gcuaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|---aa-cc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUCAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----uuuu- 9301 >--------- ---------- --A-CUG-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 C--AG-- gaggccu-au au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uagucua> 9541 ---------- ---------- acac-gccuc cu-------- ---------- -------uuc 9601 ---------- --caauuagu (gaaauc--a acuca)a-cu -aa-uaa-ga a--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 cu-(-agaua ---)-agga- -ua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.austr 10775 bp RNA RNA 18-JUN-1997 DEFINITION Mitochondria Apteryx australis.; . ACCESSION U76036 KEYWORDS . SOURCE Mitochondria Apteryx australis. ORGANISM Mitochondria Apteryx australis. REFERENCE 1 (bases 1 to 1598) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Phylogenetic relationships of the ratite birds: resolving conflicts between molecular and morphological data sets JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: Academic Press; New York (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1598) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U76036 BASE COUNT 569 a 393 c 273 g 363 t 9177 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~gg c--------- ----ccuucc 301 |UCU--AGC| UCA-A----- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- uuacccu-uu aacauaaacc aaacaaucua 601 cuauaacacc ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----UAAC 841 CAA(AACA)U Uuuuu----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |aca-ccuA- -GUAU-A(-G GCGA)UAGAA -Aagcu---- 961 -------<-- ---ac----- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------U U-GACGCAAU AGAG-ACAUu uuucGUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauaaca augaaauaca uaa------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ------aa-g c-AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaca--uc- 2101 caagcacaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcu-auCCCG AA-ACCCAaG CG-AGCUACU CAC-AAG-CA GCUA------ c--------- 2761 -(-------- ---------- ---------- ---------- ------cau) ------u--- 2821 -GAGCAAAAC CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AAUC-G A-GCUGGGUG AUAGCU-GGU UGCUU--GUA AA-ACG-AAU 2941 (-CUUA)GUU CA-CC-UCUA ACUC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -ucccccacc 3121 agac-----a cccaucuu-- a-aaccu--- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ----aaugug gaa->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-U -UAGA-AGUA AUUUA--AA- GG-AG(-GUA 3481 CAG)CCCCUU UA-AA----- -aAAGA(AGA -CAA)UCU-c uaccA-G-ag -gg-UAA--- 3541 --uuu----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AC-GU-A GGC(CCUAAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAAUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ua cgau--ccc| c--u-cg|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccacu aACAA-GC|- CA-ACCUAU- ---------- 4501 ---------- ---------- (aauc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 AA|AUGAGUA -ACUA-GAA- g--------- (ccc------ ---------- ---------- 4741 ---------- -----)---- ----c-|uuc uc-uuaaGCG Caa--acuua c|----au-- 4801 ---------- ---------- ----(--cau ac)---|--- ---auc---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-- 4921 cu-agcuuau accaccaccu caacaag-aa ccaauauuaa acuacc---- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UACCCC- -(AACCCA)G G|AGCGC--- ----(cuauu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -UAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u cuAGGGCU|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------uaa cagcaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------u-c a-u)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAACGGCUAA A-CGAGGUCC 7261 UA-------- ---------- -------ACU GUCUCUUACA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCCU CU-UG(U-GC AAAAG)CAAG AAU----AUA AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUG--AAA AU|--C-aag gac--caa-| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -------cuu acaacagcu- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-u-cc -c---uA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAAGAAC- )CUCC-AA|A |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaca ccuug----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gaa( -caacuc--- )cucaa-agu -acuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----aacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ca)--|---A 9001 UUGAUUAAU- |GAA-CGAAG CUACCC|CAG G|GAUAACAG |C-Gac---U CUCCUUCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--UA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )CAACG-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----caac- 9301 >--------- ---------- --A-CUC-UU CCC-(CAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- aaggccc-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caacca> 9541 ---------- ---------- gcac-gccuu cu-------- ---------- -------uuc 9601 ---------- --uaauuagu (gaaauc--a acuua)a-cu -aa-caa-ga a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.livia 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Columba livia. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Columba livia. ORGANISM Mitochondria Columba livia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87858 LOCUS MTCLIV16S 1189 bp DNA VRT 05-DEC-1995 DEFINITION C.livia mitochondrial gene for 16S ribosomal RNA. ACCESSION X87858 NID g1103597 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE domestic pigeon. ORGANISM Mitochondrion Columba livia Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba. REFERENCE 1 (bases 1 to 1189) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1189) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1189) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103597 FEATURES Location/Qualifiers source 1..1189 /organism="Columba livia" /mitochondrion rRNA 1..1189 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 387 a 332 c 223 g 245 t 2 others ORIGIN BASE COUNT 387 a 332 c 223 g 245 t 9588 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~auga gacc>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AG-U -CAAG-AGUA AUUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UN-AA----- -aCAGA(AUA -CAA)CCU-c cccuA-G-cg -ga-UAA--- 3541 --cuc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AUUGU-G GGC(CUUCAA 3781 GC-A)-GCCA -UCAA|C(A- GA)-|GAGUG C(--GUCAAA )GC|-UCC-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca ugac--ucc| c--u-uc|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccacu aACAG-GU|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gacc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 AA|AUGAGUA -ACUA-GGG- ---------- (cauac---- ---------- ---------- 4741 ---------- -----)---- ------|CCC Uc-ucaaGCG Caa--acuua c|----au-- 4801 ---------- ---------- ----(cuccc cc)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-- 4921 -c-aacuaau acucucacuc caacaagacc auguauuuua ccccc----- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---ug--|-- 6481 -u-UAACCC- -(AACUCA)G G|AGCGC--- ----(ccacu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -UAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------uc cuAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (--------u gaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------ccc- au-)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUACA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUC CC-UG(U-GC AAAAG)CAGG AAU----GUG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-agc agc--ca--| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- --caaccuac caggcccacc 7561 uucaacaaaa cucu------ ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-c-uc -g---cAuUU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAACACACC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccaccac cucuua---- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gag( -caaccc--- )cucaa-cgu -acuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----gacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGACCAAU- |GGA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCCUCCAAG 9061 AG(C--CCAU )AUCGACAAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----auga- 9301 >--------- ---------- --A-CUG-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uuuuau> 9541 ---------- ---------- gcac-gccuc cu-------- ---------- -------cuc 9601 ---------- --uaagugau (gacugc--a acuaa)a-cc -ac-caa-ga g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- -ccgcuagcg uggcagagcc ngguaacugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.major 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Crotophaga major. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Crotophaga major. ORGANISM Mitochondria Crotophaga major. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87860 LOCUS MTCMAJ16S 1189 bp DNA UNA 05-DEC-1995 DEFINITION C.major mitochondrial gene for 16S ribosomal RNA. ACCESSION X87860 NID g1103599 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Crotophaga major. ORGANISM Mitochondrion Crotophaga major Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Cuculiformes; Crotophagidae. REFERENCE 1 (bases 1 to 1189) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1189) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1189) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103599 FEATURES Location/Qualifiers source 1..1189 /organism="Crotophaga major" /mitochondrion rRNA 1..1189 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 418 a 322 c 209 g 239 t 1 others ORIGIN BASE COUNT 418 a 322 c 209 g 239 t 9587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ccgu agca>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -CAAG-AGCA ACUAA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAA)UCU-c cccuA-G-cg -gaUUAA--- 3541 --caa----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -ACUGU-G GGC(CUUUAA 3781 GC-A)-GCCA -CCAA|C(A- AA)-|GAAUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca ugac--ucc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----ccucac aGCAG-GC|- CA-AUCUAU- ---------- 4501 ---------- ---------- (aaca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAG CUAAUGC-UA 4681 AA|AUAAGUA -ACUU-GGA- ---------- (cucac---- ---------- ---------- 4741 ---------- -----)---- ------|ucc uc-ucaaGCG Caa--gcuca c|----au-- 4801 ---------- ---------- ----(-gauc ac)---|--- ---auu---- ---------- 4861 ---acuaa-- -caaa----- ---------- -------(-- ---------- ------)<-c 4921 cc-aacuaau acuacaacuc caacaagacc aanuauuaaa uccc------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(AACCCA)G G|UGCGC--- ----(uuacu a-----)--- ----gaaa-| 6541 |----GAU-U G--AAACCUG -CAAA-AGGA ACUAGGCAAC ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ucAAGACC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUUAG|C-- ---------- ---------- (--------c caucaa)--- ---------- 6901 ------GUA- UUA-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------acaa cau)------ ---------- ---------| 7141 ---AUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCUCA(-U AAAU-)CGGG AC|CU-GUAU GAAUGGCUAA A-CGAGAUCU 7261 UA-------- ---------- -------ACU GUCUCUUGCA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AUC CUCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-ac- ggc--ca--| <----cccgc acacaaaccc 7441 a--------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ----aaccua ccagcccacu 7561 aacuugcaga cacu------ ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ga-c-cc -g---uA-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAGCAAAUC- )CUCC-AA|A |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaca cucuua---- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accaa-gag( -caaccc--- )cucaa-cgu -acuaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------gag 8881 u|----accc AGACC-CAGU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ca)--|---A 9001 CUGACCAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUUAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUGAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acaa- 9301 >--------- ---------- --A-CCU-CU CC--(UAGU- AC(-GAAA)G GACC-)GGAG 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----cccaa> 9541 ---------- ---------- gcac-gccuc cc-------- ---------- --------ca 9601 ---------- --uaaguaau (gacaac--a acuaa)a-uc -ac-uac-aa a--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 cu-(-aaaaa ---)-agga- -ccgcuagcg uggcagaguu uggcaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.palli 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Cuculus pallidus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Cuculus pallidus. ORGANISM Mitochondria Cuculus pallidus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87862 LOCUS MTCPAL16S 1187 bp DNA VRT 05-DEC-1995 DEFINITION C.pallidus mitochondrial gene for 16S ribosomal RNA. ACCESSION X87862 NID g1103601 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE pallid cuckoo. ORGANISM Mitochondrion Cuculus pallidus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus. REFERENCE 1 (bases 1 to 1187) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1187) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1187) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103601 FEATURES Location/Qualifiers source 1..1187 /organism="Cuculus pallidus" /mitochondrion rRNA 1..1187 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 407 a 305 c 217 g 258 t ORIGIN BASE COUNT 407 a 305 c 217 g 258 t 9588 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~acgu agua>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -UAAG-AGUU AUUUA--AA- GG-GG(-GUA 3481 CAG)CCCCuU UA-AA----- -aAAGG(AUA -CAA)CCU-c aucac-g-cg -ga-UAA--- 3541 --agc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -ACUGU-G GGC(CUUUAA 3781 GC-A)-GCCA -UCAA|U(A- AA)-|GAAUG C(--GUCAAA )GC|-UCu-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca cgac--ucc| c--u-cu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccacu aACAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (aucu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA UUAAUGC-UA 4681 AA|AUAAGUA -ACUU-GGA- ---------- (uucca---- ---------- ---------- 4741 ---------- -----)---- ------|UCC Uc-ucaaGCG Caa--gcuua c|----ac-- 4801 ---------- ---------- ----(uuuac ac)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)<-c 4921 uacaacuagu accacaacua cgacaag-ac cacguacuac acac------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 -u-UAACCC- -(AACACA)G G|AGCGC--- ----(ucgcu a-----)--- ----gaaa-| 6541 |----GGU-U C--AAAUCUG -UAAA-AGGA ACUAGGCAAC ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAGACU|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUUAG|C-- ---------- ---------- (--------c aaccaa)--- ---------- 6901 ------GUA- UUA-AAGGUG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------acg u-a)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCUCA(-U AAAU-)CGGG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUACA GAUA-AC-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----AGC ACCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--Cagcg auc--a---| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ----aaccua ccaggccuau 7561 ugacauuaaa ugu------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-a-uc -ua--cA-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAUAAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agacccuccc ucuug----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gag( -caacca--- )cucaa-cgu -acuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----accc AGACC-CAGC ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 CUGACCAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GU)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----auga- 9301 >--------- ---------- --A-CUU-AU CC--(CAGU- AC(-GAAA)G GACC-)GGAU 9361 A--AG-- gaggcca-au gc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----cacua> 9541 ---------- ---------- gcau-gccuu cc-------- ---------- --------ua 9601 ---------- --aaaguaau (gaccac--a acuaa)a-uu -ac-uac-ca a--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cu-(uagaaa ---)-aggc- -cagcuagcg uggcagagac cgguaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.undul 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Melopsittacus undulatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Melopsittacus undulatus. ORGANISM Mitochondria Melopsittacus undulatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87866 LOCUS MTMUND16S 1174 bp DNA VRT 05-DEC-1995 DEFINITION M.undulatus mitochondrial gene for 16S ribosomal RNA. ACCESSION X87866 NID g1103604 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE budgerigar. ORGANISM Mitochondrion Melopsittacus undulatus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Melopsittacus. REFERENCE 1 (bases 1 to 1174) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1174) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1174) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103604 FEATURES Location/Qualifiers source 1..1174 /organism="Melopsittacus undulatus" /mitochondrion rRNA 1..1174 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 391 a 354 c 218 g 211 t ORIGIN BASE COUNT 391 a 354 c 218 g 211 t 9601 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ccgu aaua>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GA-C -UAAG-AGCU ACUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -acAGG(ACA -CAA)CCU-c caccA-G-cg -ga-UAA--- 3541 --ccc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ----GU-A GGC(CCUAAA 3781 GC-A)-GCCA -CCCA|U(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca cgac--ucc| c--u-ac|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----acccc aACAG-GC|- UA-ACCUAu- ---------- 4501 ---------- ---------- (cacu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAUGAA UCAAUGC-UA 4681 GA|ACGAGUA -ACCA-GGA- u--------- (aucac---- ---------- ---------- 4741 ---------- -----)---- ----a-|ucc cc-uuaaGCG Cca--gccua c|-------- 4801 ---------- ---------- ----(--aca ca)---|--- ---------- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)<-a 4921 cagaccacaa ugccuaacau acaccccccc cauugaacac accc------ ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(--ACCA)G G|GGCGC--- ----(acaac u-----)--- ----agga-| 6541 |---CGAU-C C--AAAUCUG -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (--------c aaacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------acu c-a)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGCCU 7261 UA-------- ---------- -------ACU GUCUCCUGCA GACA-AU-CA ----GUGAAA 7321 CU|G|AUCUC CC-CG(U-GC AAAAG)CGAG GAU----AUA UACACAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUU--AAA AU|--C-aau agc--c---| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ----aacc-- -aaaa-a--- 7561 ca-cu----- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-c-ua -au---A-UU UUUAGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAACAAAUC- )CUCC-AA|A |a|cc---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 aggccacaac ccuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accaa-gag( -cuaccc--- )cucaa-cgu -acuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----gucc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a aa)--|---A 9001 UUGAUCAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCCCCAAG 9061 AG(C--CCAU )AUCGACAAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAGU GG-UG(--CA -GC)CGCUAC UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|GUG---- --|-|<---- ---------- ---------- ---------- -----auaa- 9301 >--------- ---------- --A-CCU-UC CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--GG-- ggggccu-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----cccaa> 9541 ---------- ---------- gcac-gcccc cuc------- ---------- ---------- 9601 ---------- cccaagugau (gacccc--a acuaa)a-uc -ac-caa-ag g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 a--(-agaaa ---)-augg- -ucgcuagug uagcagagcc cggcaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.ameri 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Coccyzus americanus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Coccyzus americanus. ORGANISM Mitochondria Coccyzus americanus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87856 LOCUS MTCAME16S 1189 bp DNA VRT 05-DEC-1995 DEFINITION C.americanus mitochondrial gene for 16S ribosomal RNA. ACCESSION X87856 NID g1103595 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE yellow-billed cuckoo. ORGANISM Mitochondrion Coccyzus americanus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Neognathae; Cuculiformes; Coccyzidae; Coccyzus. REFERENCE 1 (bases 1 to 1189) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1189) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1189) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103595 FEATURES Location/Qualifiers source 1..1189 /organism="Coccyzus americanus" /mitochondrion rRNA 1..1189 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 402 a 310 c 219 g 258 t ORIGIN BASE COUNT 402 a 310 c 219 g 258 t 9586 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~agcu agaa>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -UAGG-AGCA AUUUG--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -auAGG(AUA -CAA)CCU-c cccua-g-cg -ga-UAA--- 3541 --gac----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -aCUGU-G GGC(CUUUAA 3781 GC-A)-GCCA -UCAA|C(G- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ugaa--ucc| c--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----cuacu aACAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (guca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA UUUAUGC-UA 4681 AA|AUAAGUA -ACUA-GGG- ---------- (cucucu--- ---------- ---------- 4741 ---------- -----)---- ------|ccc uc-ucaaGCG Caa--acuua c|----au-- 4801 ---------- ---------- ----(cccau aa)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCCa a(CAUUCA)G G|AGCGC--- ----(ccauu a-----)--- ----gaaa-| 6541 |----GAU-U U--AAAUUCA -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c ccAAGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUUAG|C-- ---------- ---------- (--------c aaccaa)--- ---------- 6901 ------GUA- UUA-GAGGUG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------a-c a-c)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCUCA(-U AAAU-)CGGG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 UA-------- ---------- -------ACU GUCUCUUGUG AAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-AC AAAAG)CAGG AAU----AAC ACCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--Caacg acc--ac--| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uaca uucuucaacc cccaccggcc 7561 caucaaaacc gaaugc---- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ug-g-uc -cg--uA-UU UUUUGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAACAAAGC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agacccuacc ucuug----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accaa-gag( -caaccc--- )cucaa-cgu -acuaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----accc AGACC-CAGU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---U 9001 CUGAUCAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCAU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acaa- 9301 >--------- ---------- --A-CUU-UC CC--(CAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- gaggcca-au gc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----cccag> 9541 ---------- ---------- gcaa-gccuc c--------- ---------- -------cua 9601 ---------- --aaaguaau (gaacac--a ucuaa)a-uu -ac-uac-ca a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- -ccgcuagcg uggcagagau cggcaaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.ame.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Rhea americana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Rhea americana. ORGANISM Mitochondria Rhea americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X87868 LOCUS MTRAME16S 1183 bp DNA VRT 05-DEC-1995 DEFINITION R.americana mitochondrial gene for 16S ribosomal RNA. ACCESSION X87868 NID g1103608 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE greater rhea. ORGANISM Mitochondrion Rhea americana Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Archosauria; Aves; Palaeognathae; Rheiformes; Rheidae; Rhea. REFERENCE 1 (bases 1 to 1183) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,G., DeJong,W.W. and Sibley,C.G. TITLE Relationships of the Hoatzin JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1995) In press REFERENCE 2 (bases 1 to 1183) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1995) Hedges S. B., Pennsylvania State University, Biology, 208 Mueller, University Park, PA, USA, 16802 REFERENCE 3 (bases 1 to 1183) AUTHORS Hedges,S.B., Simmons,M.D., VanDijk,M.A., Caspers,DeJongW.W. and Sibley,C.G. TITLE Phylogenetic relationships of the hoatzin, an enigmatic South American bird JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 11662-11665 (1995) COMMENT NCBI gi: 1103608 FEATURES Location/Qualifiers source 1..1183 /organism="Rhea americana" /mitochondrion rRNA 1..1183 /partial /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" BASE COUNT 385 a 308 c 227 g 257 t 6 others ORIGIN BASE COUNT 385 a 308 c 227 g 257 t 9598 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~nnnn naaa>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -UAGG-AGCU AUUUA--UA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAG)UCU-c ugccA-G-ag -gg-UAA--- 3541 --acu----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---UNU-A GGC(CUCCAA 3781 GC-A)-GCCA -CCAA|U(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-g ugac--ccc| c--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----cccuu aACAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gacu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGUA UUAAUGC-UA 4681 GA|AUGAGUA -AUUG-GAA- g--------- (ccc------ ---------- ---------- 4741 ---------- -----)---- ----c-|uuc uc-uuaaGCG Cca--gcuua c|----au-- 4801 ---------- ---------- ----(--uau au)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(uuucu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u caAGGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------u-c a-c)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCC 7261 UA-------- ---------- -------ACU GUCUCUUUCA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----ACG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-aag ggc--caa-| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ca-cu----- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-c-cc -u---cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaaa ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-gag( -ccacau--- )cucga-agu -gcaaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----accc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ca)--|---A 9001 UUGAUUAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acac- 9301 >--------- ---------- --A-CUC-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caacca> 9541 ---------- ---------- gcac-gccuc cu-------- ---------- -------cuc 9601 ---------- --uaauuagu (gaagcc--a gcuaa)a-cu -aa-gaa-ga g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cuagcuagag uggcagagcu cgguaaaugc ag~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.ame.2 10775 bp RNA RNA 18-JUN-1997 DEFINITION Mitochondria Rhea americana.; . ACCESSION U76040 KEYWORDS . SOURCE Mitochondria Rhea americana. ORGANISM Mitochondria Rhea americana. REFERENCE 1 (bases 1 to 1585) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE conflicts between molecular and morphological data sets Phylogenetic relationships of the ratite birds: resolving JOURNAL SYSTEMATICS: Academic Press; New York (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 1585) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U76040 BASE COUNT 524 a 414 c 308 g 339 t 9190 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- ----c-uauc 301 |UCU--AGC| UCA-A----- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----aaac 841 uaa(agca)u u-c------- ---------- ---------- ---------- ---------u 901 ccgc--(--- --)------- |--a-ccuA- -GUAU-A(-G GCGA)UAGAA -Aagua---- 961 -------<-- --ac------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------U U-GACGCGAU AGAG-aucu- --caGUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauagca gugaaaaauc gaca------ ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ------aa-g c-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucagcc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaaa--cc- 2101 caagcauaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgac->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-ccCCCG AA-ACCCAaG CG-AGCUACU UAC-GAG-CA GCUU------ c--------- 2761 -(-------- ---------- ---------- ---------- -----cauu) ------g--- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUG AA-AUG-AAU 2941 (-CUUA)GUU CA-CC-CCUA AUCU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --cuccccua 3121 aaga-----u acacaaucua ccuccau--- ---------- ---------- ---------- 3181 ----cugag- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- --------ga aa-->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -UAGG-AGCU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAg)ucu-c cacga-g-ag -gg-UAA--- 3541 --acu----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---UGU-G GGC(CUUCAA 3781 GC-A)-GCCA -UCAA|C(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-g ugac--ccc| c--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----cccuu aACAG-GC|- CA-ACCUAU- ---------- 4501 ---------- ---------- (gaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGUA UCAAUGC-UA 4681 GA|AUGAGUA -AUUG-GAA- g--------- (ccc------ ---------- ---------- 4741 ---------- -----)---- ----c-|uuc uc-uuaaGCG Cca--gcuua c|----au-- 4801 ---------- ---------- ----(--uau ac)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(uuucu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u caAGGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------u-c a-c)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCUCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCC 7261 UA-------- ---------- -------ACU GUCUCUUUCA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----ACG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUU--AAA AU|--C-aag ggc--caa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ----cgcacc aauccaccca 7561 ccccaccggg cacacuccuc cgcgacacu- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-c-cc -u---cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaaa ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-gag( -ccacau--- )cucga-aga -gcaaau--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----accc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ca)--|---A 9001 UUGAUUAAU- |GAA-CCAAG CUACCC|AGG G|UAUAACAG |G-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----ugac- 9301 >--------- ---------- --A-CUC-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- aaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caaccg> 9541 ---------- ---------- gcac-gccuu cu-------- ---------- -------ccc 9601 ---------- --uaauuagu (gaagcc--a acuaa)a-cu -aa-aaa-gg g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- uua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.ame.3 10775 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondria Rhea americana.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 3 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondria Rhea americana. ORGANISM Mitochondria Rhea americana. REFERENCE 1 (bases 1 to 2613) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE of the mitochondrial ribosomal genes Ratite phylogeny and biogeography inferred from DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2613) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ002923 BASE COUNT 521 a 414 c 302 g 345 t 9193 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- ----cc-auc 301 |UCU--AGC| UCA-A----- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----aaac 841 uaa(aaca)u u-c------- ---------- ---------- ---------- ---------u 901 ccac--(--- --)------- |--a-ccuA- -GUAU-A(-G GCGA)UAGAA -Aagua---- 961 -------<-- --ac------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------U U-GACGCGAU AGAG-aucu- --uaGUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauagca augaaaaacc aa-------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-g c-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCGA GAaaa--cc- 2101 caagcauaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugac->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-acCCCG AA-ACCCAaG CG-AGCUACU UAC-GAG-CA GCUu------ c--------- 2761 -(-------- ---------- ---------- ---------- -----cauu) ---------- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUG AA-AUG-AAU 2941 (-CUUA)GUU CC-CC-CCUA AUCu<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --cucccccg 3121 ggau-----g uacaauuuac cccuauc--- ---------- ---------- ---------- 3181 ----ugag-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- --------ga aa-->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -UAGG-AGCU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAG)UCU-c ugccA-G-ag -gg-UAA--- 3541 --acu----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---UGU-G GGC(CUCCAA 3781 GC-A)-GCCA -CCAA|U(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-g ugac--ccc| c--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----cccuu aACAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gacu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGUA UUAAUGC-UA 4681 GA|AUGAGUA -AUUG-GAA- g--------- (ccc------ ---------- ---------- 4741 ---------- -----)---- ----c-|uuc uc-uuaaGCG Cca--gcuua c|----au-- 4801 ---------- ---------- ----(--uau au)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(uuucu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u caAGGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------u-c a-c)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCC 7261 UA-------- ---------- -------ACU GUCUCUUUCA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----ACG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-aag ggc--caa-| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ca-cu----- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-c-cc -u---cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaaa ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-gag( -ccacau--- )cucga-agu -gccaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----accc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ca)--|---A 9001 UUGAUUAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acac- 9301 >--------- ---------- --A-CUC-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caacca> 9541 ---------- ---------- gcac-gccuc cu-------- ---------- -------cuc 9601 ---------- --uaauuagu (gaagcc--a gcuaa)a-cu -aa-gaa-ga g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.ame.4 10775 bp RNA RNA 29-JUN-1998 DEFINITION Mitochondrion Rhea americana.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; control region; cytochrome b; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y16884 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; control region; cytochrome b; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Rhea americana. ORGANISM Mitochondrion Rhea americana. REFERENCE 1 (bases 1 to 16710) AUTHORS Harlid,A., Janke,A. and Arnason,U. TITLE early avian divergences The complete mitochondrial genome of rhea americana and JOURNAL J. Mol. Evol. 46 (6), 669-679 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16710) AUTHORS Harlid,A. TITLE Direct Submission JOURNAL Submitted (13-MAR-1998) A. Harlid, Department of Genetics, Division of Evolutionary Molecular Systematics, University of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y16884 BASE COUNT 524 a 409 c 302 g 348 t 9192 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag c--------- ----cc-auc 301 |UCU--AGC| UCA-A----- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----aaac 841 uaa(aaca)u u-u------- ---------- ---------- ---------- ---------u 901 ccac--(--- --)------- |--a-ccuA- -GUAU-A(-G GCGA)UAGAA -Aagua---- 961 -------<-- --ac------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- -(-------) ---------- ---------- 1621 ---------U U-GACGCGAU AGAG-aucu- --uaGUACC( -GUAA-)GGG ---AAA-GA- 1681 UGaaauaaca augaaaaacc aa-------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-g c-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCGA GAaaa--cc- 2101 caagcauaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugac->---- --(------) ---------- ---------- -uuuaagcuu 2701 gcc-acCCCG AA-ACCCAaG CG-AGCUACU UAC-GAG-CA GCUu------ c--------- 2761 -(-------- ---------- ---------- ---------- -----cauu) ------g--- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUG- UUAGUAG-AG 2881 GU(G-AAAA) GCC-AACC-G A-GCUGGGUG AUAGCU-GGU UGCCU--GUG AA-AUG-AAU 2941 (-CUUA)GUU CC-CC-CCUA AUCu<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< --cucccccg 3121 ggau-----g uacaauuuac cccuauc--- ---------- ---------- ---------- 3181 ----ugag-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- --------ga aa-->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-U -UAGG-AGCU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -aAAGA(ACA -CAG)UCU-c ugccA-G-ag -gg-UAA--- 3541 --acu----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---UGU-A GGC(CUUCAA 3781 GC-A)-GCCA -CCAA|U(A- AA)-|GAGUG C(--GUCAAA )GC|-UC--- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-g ugac--ccc| c--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----cccuu aACAG-GC|- UA-ACCUAU- ---------- 4501 ---------- ---------- (gacu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGUA UUAAUGC-UA 4681 GA|AUGAGUA -AUUG-GAA- g--------- (ccc------ ---------- ---------- 4741 ---------- -----)---- ----c-|uuc uc-uuaaGCG Cca--gcuua c|----au-- 4801 ---------- ---------- ----(--uau au)---|--- ---auu---- ---------- 4861 ---auuaa-- -caga----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UAACCC- -(GACUCA)G G|AGCGC--- ----(uuucu a-----)--- ----gaaa-| 6541 |----GAU-U A--AAAUCUG -CAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u caAGGGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (------caa caacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------u-c a-c)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCCCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCC 7261 UA-------- ---------- -------ACU GUCUCUUUCA GAUA-AU-CA ----GUGAAA 7321 UU|G|AUCUU CC-UG(U-GC AAAAG)CAGG AAU----ACG AACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-aag ggc--caa-| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ca-cu----- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---gg-c-cc -u---cA-UU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------AA AAAAGAAUC- )CUCC-AA|A |a|ac---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccacaaa ucuua----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-gag( -ccacau--- )cucga-agu -gcaaac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----accc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ca)--|---A 9001 UUGAUUAAU- |GAA-CCAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acac- 9301 >--------- ---------- --A-CUC-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---caacca> 9541 ---------- ---------- gcac-gccuc cu-------- ---------- -------cuc 9601 ---------- --uaauuagu (gaagcc--a gcuaa)a-cu -aa-gaa-ga g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cu-(-agaaa ---)-aggg- cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.major 10775 bp RNA RNA 18-JUN-1997 DEFINITION Mitochondria Tinamus major.; . ACCESSION U76042 KEYWORDS . SOURCE Mitochondria Tinamus major. ORGANISM Mitochondria Tinamus major. REFERENCE 1 (bases 1 to 1580) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE conflicts between molecular and morphological data sets Phylogenetic relationships of the ratite birds: resolving JOURNAL SYSTEMATICS: Academic Press; New York (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 1580) AUTHORS Lee,K., Feinstein,J. and Cracraft,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Department of Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U76042 BASE COUNT 514 a 419 c 291 g 356 t 9195 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ug c--------- ----c-aa-c 301 |UCU--AGC| UCA-A----- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- --------uc aaucuuuuac ucguaaaccc cuuccuaaa- 601 -----u---- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----uaac 841 uaa(aaca)u u-u------- ---------- ---------- ---------- ---------u 901 cuuc--(--- --)------- |--a-cuuA- -GUAU-A(-G GCGA)UAGAA -Aagua---- 961 -------<-- ----ac---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------U A-GACGCAAU AGAG-ACU-- --ccGUACC( -GUAA-)GGG ---AAA-GC- 1681 UGaaauagca augaaa-cau ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-g c--acaa--- ---------- ---------- ---------- 1861 ----->AAUA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaacc 2041 --)------- -----CUU-G UACCUU(CU- GCAUC)AUGA |UCU-AGCAA GAaca--ac- 2101 caagcacagc ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- gaac->---- --(------) ---------- ---------- -uuua-gcuu 2701 gcac-cCCCG AA-ACCCAaG CG-AGCUACU UAC-AAG-CA GCCA------ a--------- 2761 -(-------- ---------- ---------- ---------- -----aauu) ------g--- 2821 -GGCAAAA-C CC-GUCUCU( GUAGCAA-A) AGAG-UGGGA --AGACUUG- UCAGUAG-AG 2881 GU(G-AAAA) GCC-AAUCGG A-GCUGGGUG AUAGCU-GGU UGCCC--ACG AA-ACG-AAU 2941 (-CUAA)GUU CA-CC-CCUA AAC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---c-----u ccc-----ua uaggc----- ---------- ---------- ---------- 3181 ------agaa ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -aucaaacua accuaaauga gaca>----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UAGG-AGUU AUUUA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UA-AA----- -ccAGG(AUA -CAA)CCU-a ugcua-g-ag agg-UAA--- 3541 --agc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---UGU-U GGC(CUUCAA 3781 GC-A)-GCCA -CCAA|C(c- AA)-|GAGUG C(--GUCAAA )GC|-UCC-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ca cgaa--ccc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----ccccu aGUGG-GC|- CA-ACCUAU- ---------- 4501 ---------- ---------- (aaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGGAGAA UUAAUGC-UA 4681 GA|AUGAGUA -AUUC-GAA- g--------- (acccuaccc ---------- ---------- 4741 ---------- -----)---- ----c-|uuc uc-uuagGCG Caa--acuua c|----au-- 4801 ---------- ---------- ----(--acu ag)---|--- ---auu---- ---------- 4861 ---auuaa-- -cag------ ---------- -------(-- ---------- ------)<-c 4921 cugacuuaua uagccacccc acaagacuau uuauuuaacc agc------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --cug--|-- 6481 -u-UACCCC- -(AACUCA)G G|AGCGC--- ----(ccccc a-----)--- ----gaca-| 6541 |----GAU-U A--AAACCUG -CAAAAAGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c cuaAGACC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUCAG|C-- ---------- ---------- (-------cc acacaa)--- ---------- 6901 ------GUA- UUG-AAGGUG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------u- aau)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AA-U-U |GUCUCA(-U AAAU-)CGAG AC|UU-GUAU GAAUGGCUAA A-CGAGGUCU 7261 CA-------- ---------- -------ACU GUCUCUUGCA GGUA-AU-CA ----AUGAAA 7321 UU|G|AUCU- CC-UG(U-GC AAAAG)CAGG GAU----CGU GACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUA--AAA AU|--C-cuu ggu--caa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---uacaccu acucuauuaa 7561 ccaacauggc cuacuccccu guaucuu--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---ga-c-cc -----uAuUU UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAG(- --------UA CAAACCAAC- )CUCC-AA|g |a|uu---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------a 8341 agaccaucac aucuua---- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-gag( ccuacac--- )cucaa-agu -acuuac--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 u|----aacc AGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ua)--|---A 9001 UUGAUUAAC- |GGA-CUAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCUUCAAG 9061 AC(C--CCCU )AUCGACAAG --GAGGUUUA GC-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-G(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----uucu- 9301 >--------- ---------- --A-CUG-CC CC--(GAGU- AC(-GAAA)G GCCC-)GGGG 9361 C--AG-- gaggcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uacacc> 9541 ---------- ---------- acau-gccuc cg-------- ---------- -------cuc 9601 ---------- --uaguuagu (gaaacc--a acuca)a-cu -au-caa-ga g--------- 9661 ---------- -------~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (19)-Croco 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.mis.1 10775 bp RNA RNA 25-FEB-1998 DEFINITION Mitochondrion Alligator mississippiensis.; ATP synthase; cytochrome b; cytochrome c oxidase; NADH dehydrogenase; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Ser; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y13113 KEYWORDS ATP synthase; cytochrome b; cytochrome c oxidase; NADH dehydrogenase; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Ser; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Alligator mississippiensis. ORGANISM Mitochondrion Alligator mississippiensis. REFERENCE 1 (bases 1 to 16642) AUTHORS Janke,A. and Arnason,U. TITLE archosauria (birds and crocodiles) The complete mitochondrial genome of Alligator mississippiensis and the separation between recent JOURNAL Mol. Biol. Evol. 14 (12), 1266-1272 (1997) STANDARD No information REFERENCE 2 (bases 1 to 16642) AUTHORS Janke,A. TITLE Direct Submission JOURNAL Submitted (09-MAY-1997) A. Janke, Dep. of Genetics, Devision of Evolutionary Molecular, Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y13113 BASE COUNT 578 a 402 c 265 g 343 t 9187 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- -----ccaua 301 |UCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 CAA(AACA)U UUAucua--- ---------- ---------- -----ac--- ---------- 901 ------(--- --)------- |-ac-uuUA- -GUAU-U(-G GCGA)AAGAA -aauau---- 961 -------<-- ----aauc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCAAC AGAU-AAA-- ----GUACC( -GCAAg)GGA ---AAA-AA- 1681 UGaaauaaaa augaaaaca- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-CACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaacc 2041 --)------- -----CUU-C UACCUU(UC- GCAUC)AUGG |UUU-AGCaa accaca-ac- 2101 uggca----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- -------aaa 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aauu uaag->---- --(------) ---------- ---------- ------ucac 2701 a-c-aaCCCG AA-ACUAG-G UG-AGCUACU AAC-UAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aauuu) ---------- 2821 -GAGCUAA-C CC-CCCUCU( GUGGCAA-A) AGAG-CGGGA --AGACUAC- UUAGUAG-AA 2881 GU(G-AAAA) GCC-UACC-G A-ACCUAGUG AUAGCU-GGC UGCUU--GGA AA-AUG-AAU 2941 (-CUUA)GUU CC-AC-UGUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -ucuccuaac 3121 uacc-----a caacgaagga uaaggaaga- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UUCA-AGCU AUUUA--AU- AG-AG(-GUA 3481 CAG)CUCUAU UA-AU----g --cAGG(ACU -CAA)CCU-c cacuu-a-ag -gg-UAA--- 3541 --uccauccc auuccuc-g- g--------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->acugu-g GGC(CUAAAA 3781 GC-A)-GCCa -ccac|a(a- --)-|AAAAG C(--GUCAAA )GC|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ucga--acc| c--u-ac|-- -------auc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aua aCCAA-GC|- CA-UCCUAca ---------- 4501 ---------- ---------- (-acc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -cUAGAAAAG AUUAUGC-UA 4681 AA|AUGAGUA -AUAA-GAA- a--------- (--acga--- ---------- ---------- 4741 ---------- -----)---- ----c-|uuu cuccuuuGCG UCA--gccua c|---auccu 4801 a-cau---ga ---------- ----(---ca cc)c-u|--a uagau----- ---------- 4861 ---uauuaa- -cagc----- ---------- -------(-- ---------- ------)<-c 4921 gcuuccuaca ccaccccaca aaaaacaaaa agaagaccuc a--------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 uu-gaacCC- -(AACACA)G G|AACGC--- ----(aac-a ------)--- ----ggaaa| 6541 |---GGCU-- A--AACCUUC -GAAA-AGGA ACU-GGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aaAGAUUC|C GA---CUG-U UU(ACCAA)A AA-CACA-GC 6841 CCCUAG|C-- ---------- ---------- (ccccuca-- ------)--- ---------- 6901 ------GUA- UUA-GGGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu cca)------ ---------- ---------| 7141 ---AUUG-AA U-|GG-C|-C -GCGGU-(AU auaca)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUc-AC-u-U |GUUCUC(-C AAAU-)AAGG AC|CA-GUAU GAACGGCUAA A-CGAGAAUC 7261 UA-------- ---------- -------ACU GUCUCCUGCA AGCA-AC-CA ----AUGAAA 7321 UU|G|AUCUC CC-UG(U-GC AAAAG)CAGG AAU----GAC CCCACCAGAC GAGAAG-ACC 7381 CUGUGA-|-A ACUUU--AAC CG|--A-CUA AGU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-cacacu aggaacaaca caacc-caca 7561 ac-caccuua aaccca---- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-C-UU -AG---C-GC UUUUGGUUG( 8161 GGG)UG-AC- C|CUAAAA(- --------CA AAAAAAAAC- )UUUUaAG|A |c|aa---|< 8221 ucauaacaaa auuagacuau ua-------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gac( -ccacac--- )cucaa-agu -acuuaa--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------cug 8881 u|---aa-uu aGAUC-CGAC ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a au)--|---G 9001 UCGAUCCAC- |GAA-CUAAG CUACUC|CAG G|GAUAACAG |C-GCA-A-U CCCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC--AUU GG-UG(--UA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 --AAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ---acuaug- 9301 >--------- ---------- --u-cuc-UU CC--(UAGU- AC(-GAAA)G GACC-)GGGG 9361 a--aa-<--- ---------- ---------- -------->c aaggccc-au gc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -caccaaa-> 9541 ---------- ---------- guac-gccuu accuauaau- ---------- ---------- 9601 ---------- -----uuaau (gcacgu--a acuaa)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uu-(cucaaa ac-)-aagag aac~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.mis.2 10775 bp RNA RNA 28-NOV-1994 DEFINITION Mitochondrion Alligator mississippiensis.; 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Val. ACCESSION L28074 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Val. SOURCE Mitochondrion Alligator mississippiensis. ORGANISM Mitochondrion Alligator mississippiensis. REFERENCE 1 (bases 1 to 2624) AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (7), 2621-2624 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L28074 NCBI gi: 472798 BASE COUNT 585 a 404 c 273 g 348 t 9165 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~aA C--------- -----ccaua 301 |UCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 CAA(AACA)U UUAucua--- ---------- ---------- -----ac--- ---------- 901 ------(--- --)------- |-ac-uuUA- -GUAU-U(-G GCGA)AAGAA -aauau---- 961 -------<-- ----aauc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCAAC AGAU-AAA-- ----GUACC( -GCAA-)GGA ---AAA-AA- 1681 UGaaauaaaa augaaaaca- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-CACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaacc 2041 --)------- -----CUU-C UACCUU(UC- GCAUC)AUGG |UUU-AGCaa accaca-ac- 2101 uggca----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- -------aaa 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aauu uaag->---- --(------) ---------- ---------- ------ucac 2701 a-c-aaCCCG AA-ACUAG-G UG-AGCUACU AAC-UAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aauuu) ---------- 2821 -GAGCUAA-C CC-CCCUCU( GUGGCAA-A) AGAG-CGGGA --AGACUAC- UUAGUAG-AA 2881 GU(G-AAAA) GCC-UACC-G A-ACCUAGUG AUAGCU-GGC UGCUU--GGA AA-AUG-AAU 2941 (-CUUA)GUU CC-AC-UGUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -ucuccuaac 3121 uacc-----a caacgaagga uaaggaaga- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UUCA-AGCU AUUUA--AU- AG-AG(-GUA 3481 CAG)CUCUAU UA-AU----g --cAGG(ACU -CAA)CCU-c cacuu-a-ag -gg-UAA--- 3541 --uccauccc auuccuc-g- g--------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->acugu-g GGC(CUnAAA 3781 GC-A)-GCCa -ccac|a(a- --)-|AAAAG C(--GUCAAA )GC|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ucga--acc| c--u-ac|-- -------auc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aua aCCAA-GC|- CA-UCCUAca ---------- 4501 ---------- ---------- (-acc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -cUAGAAAAG AUUAUGC-UA 4681 AA|AUGAGUA -AUAA-GAA- a--------- (--acga--- ---------- ---------- 4741 ---------- -----)---- ----c-|uuu cuccuuuGCG UCA--gcuac a|----uccu 4801 a-cau---ga ---------- ----(---ca cc)c-u|--a uagau----- ---------- 4861 ---uauuaa- -cagc----- ---------- -------(-- ---------- ------)<-c 4921 gcuuccuaca ccacccnaca aaaaacaaaa agaagaccuc a--------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 uu-GAACCC- -(AACACA)G G|AACGC--- ----(aac-a ------)--- ----ggaaa| 6541 |---GGCU-- A--AACCUUG -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aaAGAUUC|C GA---CUG-U UU(ACCAA)A AA-CACA-GC 6841 CCCUAG|C-- ---------- ---------- (ccccuca-- ------)--- ---------- 6901 ------GUA- UUA-GGGGUG AUNCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu cca)------ ---------- ---------| 7141 ---AUUG-AA U-|GG-C|-C -GCGGU-(AU auaca)ACCG UG|C(GAA)- GG-UANCGUA 7201 AUn-AC-n-U |GUUCUC(-C AAAU-)AAGG AC|NA-GUAU GAACGGCUAA A-CGAGAAUC 7261 UA-------- ---------- -------ACU GUCUCCUGCA AGCA-AC-CA ----AUGAAA 7321 UU|G|AUCUC CC-UG(U-GC AAAAG)CAGG AAU----GAC CCCACCAGAC GAGAAG-ACC 7381 CUGUGA-|-A ACUUU--AAC CG|--A-CUA AGU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-cacacu aggaacaaca caacc-caca 7561 accaccuuaa accca----- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-C-UU -AG---C-GC UUUUGGUUG( 8161 GGG)UG-AC- C|CUAAAA(- --------CA AAAAAAAAC- )UUUUaAG|A |c|aa---|< 8221 ucauaacaaa auuagacuau ua-------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gac( -ccacac--- )cucaa-agu -acuuaa--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------cug 8881 u|---aa-uu aGAUC-CGAC ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a au)--|---G 9001 UCGAUCCAC- |GAA-CUAAG CUACUC|CAG G|GAUAACAG |C-GCA-A-U CCCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC--AUU GG-UG(--UA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 --AAGGCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ---acuaug- 9301 >--------- ---------- --u-cuc-UU CC--(UAGU- AC(-GAAA)G GACC-)GGGG 9361 a--aa-<--- ---------- ---------- -------->c aaggccc-au gc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -caccaaa-> 9541 ---------- ---------- guac-gccuu accuauaau- ---------- ---------- 9601 ---------- -----uuaau (gcacgu--a acuaa)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uu-(cucaaa ac-)-aagag aacgcuaggu uggcagagcu ggcuuaaugc aa~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.mis.3 10775 bp RNA RNA 14-JUN-1998 DEFINITION Mitochondrion Alligator mississippiensis.; . ACCESSION AF0694 8 KEYWORDS . SOURCE Mitochondrion Alligator mississippiensis. ORGANISM Mitochondrion Alligator mississippiensis. REFERENCE 1 (bases 1 to 15898) AUTHORS Mindell,D.P., Sorenson,M.D., Dimcheff,D.E., Hasegawa,M. and Yuri,T. TITLE Phylogeny of birds and placement of turtles based on whole mitochondrial genomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 9137 to 9589) AUTHORS Mindell,D.P., Sorenson,M.D. and Dimcheff,D.E. TITLE Translational frameshifting in animal mitochondrial DNA JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 15898) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Primers for a PCR-based approach to complete mitochondrial genome sequencing JOURNAL Unpublished STANDARD No information REFERENCE 4 (bases 1 to 15898) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Direct Submission JOURNAL Submitted (02-JUN-1998) Museum of Zoology and Department of Biology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF069428 BASE COUNT 578 a 405 c 268 g 347 t 9177 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~aA C--------- -----ccaua 301 |UCU--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |----caAAC 841 CAA(AACA)U UUAucua--- ---------- ---------- -----ac--- ---------- 901 ------(--- --)------- |-ac-uuua- -GUAU-U(-G GCGA)AAGAA -aauaua--- 961 -------<-- -----auc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGCGCAAC AGAU-AAA-- ----GUACC( -GCAAg)GGA ---AAA-AA- 1681 UGaaauaaaa augaaaaca- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-CACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaacc 2041 --)------- -----CUU-C UACCUU(UC- GCAUC)AUGG |UUU-AGCaa accaca-ac- 2101 uggca----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- -------aaa 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aauu uaag->---- --(------) ---------- ---------- ------ucac 2701 a-c-aaCCCG AA-ACUAG-G UG-AGCUACU AAC-UAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- ----aauuu) ---------- 2821 -GAGCUAA-C CC-CCCUCU( GUGGCAA-A) AGAG-CGGGA --AGACUAC- UUAGUAG-AA 2881 GU(G-AAAA) GCC-UACC-G A-ACCUAGUG AUAGCU-GGC UGCUU--GGA AA-AUG-AAU 2941 (-CUUA)GUU CC-AC-UGUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -ucuccuaac 3121 uacc-----a caacgaagga uaaggaaga- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UUCA-AGCU AUUUA--AU- AG-AG(-GUA 3481 CAG)CUCUAU UA-AU----g --cAGG(ACU -CAA)CCU-c cacuu-a-ag -gg-UAA--- 3541 --uccauccc auuccuc-g- g--------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->acugu-g GGC(CUUAAA 3781 GC-A)-GCCa -ccac|a(a- --)-|AAAAG C(--GUCAAA )GC|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ucga--acc| c--u-ac|-- -------auc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aua aCCAA-GC|- CA-UCCUAca ---------- 4501 ---------- ---------- (-acc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -cUAGAAAAG AUUAUGC-UA 4681 AA|AUGAGUA -AUAA-GAA- a--------- (--acga--- ---------- ---------- 4741 ---------- -----)---- ----c-|uuu cuccuuuGCG UCA--gccua c|---auccu 4801 a-cau---ga ---------- ----(---ca cc)c-u|--a uagau----- ---------- 4861 ---uauuaa- -cagc----- ---------- -------(-- ---------- ------)<-c 4921 gcuuccuaca ccaccccaca aaaaacaaaa agaagaccuc a--------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ccug--|-- 6481 uu--AACCC- -(AACACA)G G|AACGC--- ----(aac-a ------)--- ----ggaaa| 6541 |---GGCU-- A--AACCUUG -CAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c aaAGAUUC|C GA---CUG-U UU(ACCAA)A AA-CACA-GC 6841 CCCUAG|C-- ---------- ---------- (ccccuca-- ------)--- ---------- 6901 ------GUA- UUA-GGGGUG AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu cca)------ ---------- ---------| 7141 ---AUUG-AA U-|GG-C|-C -GCGGU-(AU auaca)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUc-AC-u-U |GUUCUC(-C AAAU-)AAGG AC|CA-GUAU GAACGGCUAA A-CGAGAAUC 7261 UA-------- ---------- -------ACU GUCUCCUGCA AGCA-AC-CA ----AUGAAA 7321 UU|G|AUCUC CC-UG(U-GC AAAAG)CAGG AAU----GAC CCCACCAGAC GAGAAG-ACC 7381 CUGUGA-|-A ACUUU--AAC CG|--A-CUA AGU--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-cacacu aggaacaaca caacc-caca 7561 ac-caccuua aaccca---- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGA-C-UU -AG---C-GC UUUUGGUUG( 8161 GGG)UG-AC- C|CUAAAA(- --------CA AAAAAAAAC- )UUUUaAG|A |c|aa---|< 8221 ucauaacaaa auuagacuau ua-------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- acuaa-gac( -ccacac--- )cucaa-agu -acuuaa--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------cug 8881 u|---aa-uu aGAUC-CGAC ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a au)--|---G 9001 UCGAUCCAC- |GAA-CUAAG CUACUC|CAG G|GAUAACAG |C-GCA-A-U CCCCUUCAAG 9061 AG(C--CCCU )AUCGACAAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CAUU GG-UG(--UA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 --AAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ---acuaug- 9301 >--------- ---------- --u-cuc-UU CC--(UAGU- AC(-GAAA)G GACC-)GGGG 9361 a--aa-<--- ---------- ---------- -------->c aaggccc-au gc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -caccaaa-> 9541 ---------- ---------- guac-gccuu accuauaau- ---------- ---------- 9601 ---------- -----uuaau (gcacgu--a acuaa)a-uu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uu-(cucaaa ac-)-aagag aacgcuaggu ug~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (18)-Lepid 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.S.undul 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Sceloporus undulatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Sceloporus undulatus. ORGANISM Mitochondrion Sceloporus undulatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L28075 LOCUS SEORRTRA 2568 bp ds-DNA Circular VRT 18-APR-1994 DEFINITION Mitochondrion Sceloporus undulatus 12S ribosomal RNA; transfer RNA-Val; 16S ribosomal RNA; transfer RNA-Leu, 5' end. ACCESSION L28075 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Val. SOURCE Mitochondrion Sceloporus undulatus (organelle Mitochondrion Sceloporus undulatus) DNA. ORGANISM Mitochondrion Sceloporus undulatus Eukaryota; Animalia; Chordata; Vertebrata; Reptilia; Lepidosauria; Squamata; Sauria; Iguania; Iguanidae. REFERENCE 1 (bases 1 to 2568) AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic COMMENT NCBI gi: 473506 FEATURES Location/Qualifiers rRNA 1..947 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 948..1017 /anticodon=(pos:unspecified,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA 1018..2540 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 2541..>2568 /anticodon=(pos:unspecified,aa:Leu) /product="transfer RNA-Leu" /note="putative" source 1..2568 /organism="Mitochondrion Sceloporus undulatus" /mitochondrion="Mitochondrion Sceloporus undulatus" /sequenced_mol="DNA" BASE COUNT 941 a 620 c 454 g 535 t 18 others ORIGIN BASE COUNT 547 a 371 c 271 g 317 t 9269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uaaacc 301 |CCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 CAA(ACCA)U UUGac----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-gann- -GUAA-A(-G GCGA)UUAAA cauca----- 961 -------<-- -----cau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCAAA AGAC-ACA-- ----GUACC( -GCAA-)GG- ---AAA-CA- 1681 UGaaaaaaca gugaaacacc a--------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----cua-G C-UAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuuacc 2041 --)------- -----CUC-G UACCUA(UU- GCAUC)AUGG |UCC-AGCAA GAacua-ca- 2101 cagacacg-- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- gcgc->---- --(------) ---------- ---------- --cccagccu 2701 gug-ccCCCG AA-AUCAA-G UG-AGCUACC CUA-GAG-CA ACCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuua) ---------- 2821 -GGGUUCA-C CC-GUCCCU( GUAGCAA-A) AGGG-UGGGG --AGACUUC- AAGGUAG-CG 2881 GU(G-AAAA) GCC-UACC-G A-ACUUGCUG AUAGCU-GGU UGCCU--GAC AA-AUG-AAC 2941 (-CUAA)GUU CA-GC-CUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uccucaaac 3121 acac-----u auaguaaaaa cuua------ ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAG-ACUU AAUCA--UU- GG-GG(-GUA 3481 CAG)CCCCAA UG-AA----c --cGGG(AUA -CAG)CCC-g aaGUA-A-ag -ag-cuc--- 3541 --gnaunaua auauaca--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->nnagu-a GGC(CUUAAA 3781 GC-A)-GCCa -ucna|a(a- a-)-|cauuG C(--GUCACA )GC|-aca-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- caau--cuc| U--U-AC|-- -------aac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cau cUCAGUGC|- CA-AUCUAUA A--------- 4501 ---------- ---------- (aaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGAAGAA CUAAUGC-UA 4681 GA|ACUAGUA -ACAA-GAA- ---------- (--ccaa--- ---------- ---------- 4741 ---------- -----)---- ------|ucu c--uac-GCA CAA--cugua a|----auca 4801 gucac---ag ---------- ----(--aaa aa)c-u|--a cugaa----- ---------- 4861 ---aauuaa- -cagc----- ---------- -------(-- ---------- ------)<-c 4921 ccauacacau cuuaauaagu auaaauuauc ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAAUCC- -(GACACA)G G|GGUGC--- ----(caa-a ------)--- ----aagaA| 6541 |---AGAC-U C--ACAGUUA -AGGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c cAAUAUCC|C AA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CUUUAG|C-- ---------- ---------- (gauucaa-- ------)--- ---------- 6901 ------GUA- UUA-GAGGUG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------c cau)------ ---------- ---------| 7141 ---UUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCCCU(-U AAAU-)AGGG AC|CA-GUAU GAAUGGCUAA A-UGAGGAUA 7261 AA-------- ---------- -------CCU GUCUCCUUUA ACAA-AU-CA ----GUGAAA 7321 CU|G|AUCUA CC-AG(U-AC AAAAG)CUGG UAU----AAA CCCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUU--AAA UU|-----UU AAC--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-agcaac uaacgcaaac ucagc-caa- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGG-C-UA -AA---A-AC UUUAAGUUG( 8161 GGG)CG-AC- U|UCGGAA(- --------AU AAACCAAAC- )UUCC-GA|G |c|auaa-|< 8221 gac------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- -cuac-guc( uuaccaa--- )gaccu-aca agucaaagc- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ua 8881 a|----a-AU UGACC-CAGU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a cc)--|---A 9001 CUGACAACC- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CUUCUUCAAG 9061 AG(U--CCCU )AUCGACAAG --AAGGUUUA CG-UCCUCGA Unnn|nG--n n|C|AGGnC| 9121 AC-CC-cnnU GG-UG(--CA -GC)CGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-cAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----uaguu- 9301 >--------- ---------- --g-UUU-UC UU--(UAGU- AC(-GAAA)G GACC-)AAGA 9361 A--AA-<--- ---------- ---------- -------->c aggacca-cu gu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---cagcg-> 9541 ---------- ---------- acac-guccu aacaauua-- ---------- ---------- 9601 ---------- -----aggcu (gaacac--a acuaa)a-gc -ca------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cg-(gagaua a--)-cgggc uua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.semic 10775 bp RNA RNA 11-SEP-1998 DEFINITION Mitochondrion Dinodon semicarinatus.; . ACCESSION AB008539 KEYWORDS . SOURCE Mitochondrion Dinodon semicarinatus. ORGANISM Mitochondrion Dinodon semicarinatus. REFERENCE 1 (sites) AUTHORS Kumazawa,Y., Ota,H., Nishida,M. and Ozawa,T. TITLE Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster JOURNAL Mol. Biol. Evol. 13 (9), 1242-1254 (1996) STANDARD No information REFERENCE 2 (sites) AUTHORS Kumazawa,Y., Ota,H., Nishida,M. and Ozawa,T. TITLE The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions JOURNAL Genetics 150 (1), 313-329 (1998) STANDARD No information REFERENCE 3 (bases 1 to 17191) AUTHORS Kumazawa,Y. TITLE Direct Submission JOURNAL Submitted (30-OCT-1997) to the DDBJ/EMBL/GenBank databases. Yoshinori Kumazawa, Nagoya University, Earth and Planetary Sciences; Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan (E-mail:h44858a@nucc.cc.nagoya-u.ac.jp, Tel: 81-52-789-2534, Fax: 81-52-789-3033) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AB008539 BASE COUNT 582 a 354 c 229 g 307 t 9303 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------cgaa 301 -UCA--AAC| AAU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aaa 841 CAA(AACA)U UUGa-ua--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-ccaa- -GUAG-A(-U GUGA)UCGAA cag------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AACAACAA CCAC-UUA-- ----GUACC( -GCAA-)GGG ---AAU-AA- 1681 UCA------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-g c-AACA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |UCU-AGCAA GAaauc-aa- 2101 agaca----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------a 2581 ga-------- ---------- ---------- ---------- ---------- ---------- 2641 ------agaa ucau->---- --(------) ---------- ---------- ------agcc 2701 ucc-ccCCCG AA-ACCAG-A UG-AGCUACU UUA-AAG-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----a-au-) ---------- 2821 -GGGCACA-C CC-UUCUCU( GUAGCAA-A) AGAG-UGGGA --AGACUCA- AAAGUAG-CG 2881 GU(G-AAAC) GCC-UACC-G A-AUCUGGAG AUAGCU-GGC UACC---CCA AA-AAG-AAU 2941 (-CUAA)GUU CA-AC-CUUA AGA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---ca-aaac 3121 a--------- aua--cccca -uuauu---- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GC-C -UAAG--GAU AUUCA--AU- AA-AG(-GUA 3481 CAG)CUUUAU UG-AA----a --cAGG(AUA -CAA)CCU-g aaUUU-G-ag -ag-gaa--- 3541 --aauaaaac acauua---- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ccagu-a GGC(CUUAAA 3781 GC-A)-GCCa -ccua|a(c- aa)-|AAUAU C(--GUUACA )GA|-AUU-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- aaaa--cuc| c--A-AA|-- --------cc ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aac uaaag-gu|- AG-AUCUAUa ---------- 4501 ---------- ---------- (-acc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGGUCCU AUUAUGC-UA 4681 GA|ACUAAUA -AUAA-GAC- ---------- (--aacc--- ---------- ---------- 4741 ---------- -----)---- ------|ucu cuuca--aug cac--ucguc c|----c-cu 4801 agacc---gg ---------- ----(--aua ca)c-c|--a cuagc----- ---------- 4861 ---cauuaa- -caga----- ---------- -------(-- ---------- ------)<-c 4921 caaaacaggc auaaacgaac caaaacacac cuauaaauca a--------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-gaCCCC- -(AACACA)G G|agcau--- ----(uaa-a ------)--- ----aagaA| 6541 |---AGAU-U U--AACAUUA -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acaGACCC|C AA---CUG-U UU(AACAA)A AA-CAUA-AC 6841 CUUUAG|C-- ---------- ---------- (caaacaa-- ------)--- ---------- 6901 ------AUA- UUA-AAGGCA ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- caa)------ ---------- ---------| 7141 ----UUA-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUCUAC(-U AAUU-)AUAG AC|CU-GUAU GAAAGGCAAA A-UGAGGGUC 7261 CU-------- ---------- -------ACU GUCUCUUAUA AUCA-AU-CA ----AUUAAA 7321 CU|G|AUCUA CU-AG(U-AA AAAAG)CUAG AAU----ACC CACAUAAGAC CAGAAG-ACC 7381 CUGUGA-|-A GCUUA--AAC UA|--a-acu auu--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---ac-ca-- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -uaua-a-ua -gc---u-AC UUUCGGUUG( 8161 GGG)CG-AC- C|UUGGAA(- --------AA AAAAAGAAC- )UUCC-AA|c |a|ucau-|< 8221 gaccuuccuc auacc----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- auaac-ggc( -caacaa--- )gccaa---- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ua 8881 a-----a--- UGACC-CAGC ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a aa)--|---G 9001 CUGACAAAC- |GAA-CCAAG UUACUC|CAG G|GAUAACAG |C-GCA-A-U CUUCUUCAAG 9061 AG(C--CCAU )AUCAAAAAG --AAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----aacca- 9301 >--------- ---------- --g-CCU-UA UC--(CAGU- AC(-GAAA)G GAAC-)GAUA 9361 A--AG-<--- ---------- ---------- -------->c aaagcca-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --cacaa--> 9541 ---------- ---------- gcac-gcuuu aacaaaaua- ---------- ---------- 9601 ---------- ------ccaa (acacac--a ccacc)a-cc -ac------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gg 9961 uu-(aauuaa g--)-gacca ccuua~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.punct 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Sphenodon punctatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Sphenodon punctatus. ORGANISM Mitochondrion Sphenodon punctatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L28076 LOCUS SPDRRTRA 2521 bp ds-DNA Circular VRT 18-APR-1994 DEFINITION Mitochondrion Sphenodon punctatus 12S ribosomal RNA; transfer RNA-Val; 16S ribosomal RNA; transfer RNA-Leu, 5' end. ACCESSION L28076 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Val. SOURCE Mitochondrion Sphenodon punctatus (organelle Mitochondrion Sphenodon punctatus) DNA. ORGANISM Mitochondrion Sphenodon punctatus Eukaryota; Animalia; Chordata; Vertebrata; Reptilia; Lepidosauria; Rhynchocephalia; Sphenodontidae. REFERENCE 1 (bases 1 to 2521) AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic COMMENT NCBI gi: 473510 FEATURES Location/Qualifiers rRNA 1..904 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 905..975 /anticodon=(pos:unspecified,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA 976..2494 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 2495..>2521 /anticodon=(pos:unspecified,aa:Leu) /product="transfer RNA-Leu" /note="putative" source 1..2521 /organism="Mitochondrion Sphenodon punctatus" /mitochondrion="Mitochondrion Sphenodon punctatus" /sequenced_mol="DNA" BASE COUNT 933 a 587 c 453 g 544 t 4 others ORIGIN BASE COUNT 574 a 342 c 265 g 334 t 9260 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |ACU--AGC| CCG------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----uaac 841 ccA(AACA)U UUuuacg--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-ag-cuAA- -GUAU-A(-G GAGA)UAGAA -Aagaa---- 961 -------<-- ----cccc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCUAU AGAG-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GU- 1681 Uuaanauac- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G U-UAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auagacc 2041 --)------- -----CUU-G UACCUU(UU- GAAUA)AUGG |UUU-AACUA GUcca--aa- 2101 caagcuaa-- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------a agag->---- --(------) ---------- ---------- --cuaagcuu 2701 uuu-acCCCG AA-AUCAA-G UG-AGCUACU UAU-AAG-C- gu-------- ---------- 2761 -(-------- ---------- ---------- ---------- ----acaga) ---------- 2821 ---aaUAA-U UC-GGCUCU( GUGGCAA-A) AGAG-CGAAA --AGACUAA- UAAGUAG-AG 2881 GC(G-AAAC) ACC-UACC-G A-ACAUGAAG AUAGCU-GGU UACUU--AUU AA-Ann-AAU 2941 (-CUAA)GUU CU-AC-CUUA ACU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -cacccaacc 3121 cucc-----u uaaacaaaga gaaaugaaag ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAG-AGAU AUUUA--AU- AG-GG(-GUA 3481 CAG)CCCUAU UA-AA----a --uAGG(AAA -CAG)CCU-a uacaa-g-ag -ga-aag--- 3541 --agaauuac accaa----- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->accgu-- AGC(CUUAAA 3781 GC-A)-GCCa -ccaa|a(a- ua)-|UAAAG C(--GUUAAA )GC|-UAA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ucca--acc| c--u-aa|-- -------ac- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aac aAUAA-GU|- CA-UACUAUA A--------- 4501 ---------- ---------- (uaau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAACAGAA UUAAUGU-UA 4681 AA|AUGAGUA -ACAA-GAA- a--------- (--aaga--- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccgu-GCA Ucc--gcaua a|----gcca 4801 gacu----ag ---------- ----(--aca ac)c-u|--a cugguc---- ---------- 4861 ---auuaca- -caau----- ---------- -------(-- ---------- ------)<-a 4921 auugaauauu acacaacgaa caauaauauu aaucua---- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(AACACA)G G|CAUGC--- ----(acc-u ------)--- ----AGGAA| 6541 |---AGAU-U A--AACUCAC -CAGA-AGGA ACUCGGCAAC ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a ccGGGCCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-AC 6841 CUUUAG|C-- ---------- ---------- (uaaucaa-- ------)--- ---------- 6901 ------GUA- UUA-AAGGCG CCUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aaa)------ ---------- ---------| 7141 ----UUA-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AA-U-U |GUCUCC(-U AAAU-)GAAG AC|UA-GUAU GAACGGAGAA A-CGAGGGCC 7261 CA-------- ---------- -------ACU GUCUCCUGGC GAAA-AU-CA ----GUGAAA 7321 UU|G|AUCCC CU-UG(U-GC AAAAG)CAAG GAU----AAA ACCAUAAGAC GAUAAG-ACC 7381 CCGUGG-|-A GnAUA--AAC AU|--c-aga guc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- --uuauacau guugaaucc- 7561 acca----gg aauaaaauca aaaa------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --AUG-A-CC -CC-CUC-UG UUUUGGCUG( 8161 GGG)CG-GC- C|UCGGAA(- --------UA AAAAAAAAC- )UUCC-GA|A |a|accu-|< 8221 ca-------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- -uuua-gac( -caacaa--- )gucaa-aac ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ------auaa 8881 a|---auaCU UGACC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a uu)--|---A 9001 UUGAUUAUU- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCC-A-U CCCCUUCGAG 9061 AG(C--CCAU )AUCGACAAG --GGAGAUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAGU GG-UG(--CA -AC)CGCUAC UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 --cAGUCCA- --UCGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----acaua- 9301 >--------- ---------- --c-uau-uu cc--(CAGU- AC(-GAAA)G GAUC-)-gaa 9361 a--ca-<--- ---------- ---------- -------->g uagggca-ua ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --cgcaag-> 9541 ---------- ---------- caag-cccug ccc------- ---------- -------uua 9601 ---------- ----auuaau (gaaaca--a aauaa)a-uu -aa----uua a--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uaaacc a--)-gggcu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (17)-Testu 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.T.scrip 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Trachemys scripta. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Trachemys scripta. ORGANISM Mitochondrion Trachemys scripta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L28077 LOCUS TMYRRTRA 2684 bp ds-DNA Circular UNA 18-APR-1994 DEFINITION Mitochondrion Trachemys script 12S ribosomal RNA; transfer RNA-Val; 16S ribosomal RNA; transfer RNA-Leu, 5' end. ACCESSION L28077 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Val. SOURCE Mitochondrion Trachemys scripta (organelle Mitochondrion Trachemys scripta) DNA. ORGANISM Mitochondrion Trachemys scripta Eukaryota; Animalia; Chordata; Vertebrata; Reptilia; Anapsida; Testudines; Casichelydia; Cryptodira; Testudinoidea; Emydidae. REFERENCE 1 (bases 1 to 2684) AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic COMMENT NCBI gi: 473678 FEATURES Location/Qualifiers rRNA 1..966 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 967..1037 /anticodon=(pos:unspecified,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA 1038..2654 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 2655..>2684 /anticodon=(pos:unspecified,aa:Leu) /product="transfer RNA-Leu" /note="putative" source 1..2684 /organism="Mitochondrion Trachemys scripta" /mitochondrion="Mitochondrion Trachemys scripta" /sequenced_mol="DNA" BASE COUNT 1032 a 600 c 451 g 595 t 6 others ORIGIN BASE COUNT 635 a 350 c 264 g 362 t 9164 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ---aauuaaa 301 |UCU--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAC 841 UAA(AACA)U Ucuacu---- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-cuAA- -GUAU-A(-G GUGA)UAGAA -Aagua---- 961 -------<-- ----aaac-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCAAU AAAG-AUA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaaaacau gaaaaaccac ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUU-A UACCUC(UU- GCAUC)AUGA |UUU-AACCA GCacac-uu- 2101 aag------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- -----caaag 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aacu aaagu>---- --(------) ---------- ---------- --------cu 2701 aaa-ccCCCG AA-ACCAA-G UG-AGCUACU UAA-AGG-C- AGCC------ ---------- 2761 -(-------- ---------- ---------- ---------- aauaucaca) ---------- 2821 -GGCUAAA-U CC-GUCUCU( GUGGCAA-A) AGAG-UGGAA --AGACCUA- UAAGUAG-AA 2881 GU(G-AAAA) GCC-UAUC-G A-ACUUGGUG AUAGCU-GGU UGCUC--AAU AA-AUG-AAU 2941 (-GUAA)GUU CA-AC-CUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -cuucuaaaa 3121 acaa-----c cuaaaguuua cccaaaagaa aa-------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-U -UAAG-AUAU AUUCA--AU- CG-GG(-GUA 3481 CAG)CCCAAU UG-AA----a --aAGG(ACA -CAA)CCU-a aaaug-g-ag -ga-CAA--- 3541 --aacaccaa aauauau-u- ac-------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uccgu-a GGC(CUUAAA 3781 GC-A)-GCCa -ccau|u(a- aa)-|GAAAG C(--GUCAAA )GC|-CCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- uuua--ccc| c--c-aa|-- -------au- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aCUGA-GC|- CA-UUCUACc ---------- 4501 ---------- ---------- (-ccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAGAA CCAAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- g--------- (-aaaaac-- ---------- ---------- 4741 ---------- -----)---- ----u-|ucu c-uuac-GCG CCA---nuua a|----auca 4801 u-aau---ag ---------- ----(--aua aa)c-u|--a cugau----- ---------- 4861 ---uauuaa- -caau----- ---------- -------(-- ---------- ------)<-u 4921 aauaauauau gaaacaacaa cacuuaaaac accauauaac uaa------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(GACACA)G G|AGCGC--- ----(aca-u ------)--- ----aagaa| 6541 |---AGAU-U A--AAAUCCG -UAAA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )------cua aaCGAACC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CCCUAG|C-- ---------- ---------- (aacacacaa ------)--- ---------- 6901 ------GUA- UUG-GGGGUA AUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ac ugu)------ ---------- ---------| 7141 ---UUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGnGUA 7201 AUC-AC-U-U |GUCUUC(-U AAAU-)AAAG AC|UA-GAAU GAAUGGCGAA A-CGAGGUUC 7261 UA-------- ---------- -------CCU GUCUCUUACA GAUA-AU-CA ----GUGAAA 7321 UU|G|GUCUC CC-CG(U-GC AAAAG)CGAG GAU----AAU CCUAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUU--AAA CA|--c-nau cac--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-cnauca aacaccaaac uaagg-auuu 7561 au-gaccaac uagu------ ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --aua-u-ga -ucc-ac-GU UUUCGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------UA AAGCACAAC- )CUCC-GA|A |a|aa---|< 8221 agagcauacu ucucuaa--- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-gac( -uuacaa--- )cucaa-agu -gcuaa---- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------cag 8881 c|---aa-AA AGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uau au)--|---- 9001 UUGAUCAAC- |GAA-CUAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCAUCCUAG 9061 AG(C--CCUU )AUCGnCGAU --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAU GG-UG(--AA -AC)CGCUAU CAAG-GGU|U CGUU(UGUUC )AACnA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------u gaaucuuga- 9301 >--------- ---------- --g-UCU-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--GA-<--- ---------- ---------- -------->c agggccu-ac au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uaaaa-> 9541 ---------- ---------- acaa-gccuu accuuaca-- ---------- ---------- 9601 ---------- -----uuagu (gaagac--a acuaa)a-cu -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ac 9961 uu-(caaaau aa-)-gaguc ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.subru 10775 bp RNA RNA 15-SEP-1998 DEFINITION Mitochondrion Pelomedusa subrufa.; . ACCESSION AF039066 KEYWORDS . SOURCE Mitochondrion Pelomedusa subrufa. ORGANISM Mitochondrion Pelomedusa subrufa. REFERENCE 1 (bases 1 to 16787) AUTHORS Zardoya,R. and Meyer,A. TITLE mitochondrial control region of the African side-necked turtle, Pelomedusa subrufa Cloning and characterization of a microsatellite in the JOURNAL Gene 216, 149-153 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16787) AUTHORS Zardoya,R. TITLE Direct Submission JOURNAL Submitted (17-DEC-1997) Biodiversidad, Museo Nacional de Ciencias Naturales, Jose Gutierrez Abascal, 2, Madrid 28006, Spain STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF039066 BASE COUNT 598 a 370 c 272 g 364 t 9171 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~g c--------- -----aagac 301 |aua--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-------AU 841 UAA(AACA)U Uaua-ua--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-aa-cuUA- -GUAU-A(-G GAGA)UAGAA -Aag------ 961 -------<-- auuuuauu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCCCU AAAG-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaaaauau gaaauacuca c--------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----caa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auaaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCauaa-ca- 2101 gagacaa--- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ------aaag 2581 a--------- ---------- ---------- ---------- ---------- ---------- 2641 ------au-u aaa-->---- --(------) ---------- ---------- ------gccc 2701 cuc-ccCCCG AA-ACCAG-A UG-AGCUAUU UAA-AGG-C- AACU------ ---------- 2761 -(-------- ---------- ---------- ---------- uuagcaaaa) ---------- 2821 -GUUACAA-U CC-GUCUCU( GUGGCAA-A) AGAG-UGGAG --AGACCCU- UAAAUAG-AG 2881 GU(G-AAAA) GCC-AAAC-G A-AUCUAGUG AUAGCU-GGU UGCUC--AAU AA-AAG-AAU 2941 (-AAUA)GUU CU-AC-CUUA AAU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -cgcccaccc 3121 caca-----u gcagcacaua ugccccuuga gaa------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAAG-AGCU ACUCA--AC- CG-AG(-GAA 3481 CAG)CCCgAU UG-AG----a --aGGG(AAA -CAA)CCC-a caaug-g-ag -aacCAA--- 3541 --cuaugcaa aa--c-u-u- aa-------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->auagu-a GGC(CUUAAA 3781 GC-A)-GCCa -ucac|u(u- aa)-|GAUAG C(--GUUAAA )GC|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ccca--uuc| c--c-aa|-- -------ac- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aca aUUGA-GC|- UA-UUCUAcu ---------- 4501 ---------- ---------- (-uac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -cUAGAAGAA CCAAUGC-UA 4681 AA|AUUAGUA -ACAA-GAA- a--------- (-acuc---- ---------- ---------- 4741 ---------- -----)---- ----u-|ucu c--aac-GCA CUA--gcuua c|----guua 4801 g-uuc---ag ---------- ----(--aag aa)c-u|--a cugau----- ---------- 4861 ---uauuaa- -cgaa----- ---------- -------(-- ---------- ------)<-a 4921 uuauaccaca aaaacacuaa acaaaacaua uaacaacuca ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -accg--|-- 6481 -u-UAACCC- -(AACACA)G G|AGUGC--- ----(uga-c ------)--- ----cagaa| 6541 |---AGAU-U G--AAAUUUG -UAAA-AGGA AUUAGGCAAC ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u uaAGAGCC|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 CACUAG|C-- ---------- ---------- (ucccacaa- ------)--- ---------- 6901 ------GUA- UUA-GAGGUA GUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uua)------ ---------- ---------| 7141 ----UUA-AA C-|GG-C|-C -GCGGU-(AA -CAUG)ACCG CG|C(GAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|UA-GAAU GAAUGGCUAC A-CGAGGUUC 7261 UA-------- ---------- -------UCU GUCUCUUACA AACA-AU-CA ----GUGAAA 7321 UU|G|AUCUC CU-CG(U-GC AAAAG)CGAG AAU----AAC CACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A ACUUC--AAG UA|--uuaac caa--ca--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uacuuc aaagacccgc ccgcc-cugu 7561 ua-ggaaagg aaauaaacac aguauc---- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --cca-u-gg -uua-uc-AC UUUUGGUUG( 8161 GGG)CG-AC- C|UCGGAG(- --------AA AA-CAAAAC- )CUCC-GA|A |a|ag---|< 8221 aguacauucu cau------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- accua-gaa( -uuacac--- )cucaa-agu -gcuuua--- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------aag 8881 c----aa-aa cGAUC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uau au)--|---- 9001 UUGAUCAAC- |GAA-CAAAG CUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCUUCUCAA 9061 AG(U--CCCU )AUUAAUGAU -gGGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)AGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----cauga- 9301 >--------- ---------- --A-UAU-UU UC--(CAGU- AC(-GAAA)G GAAC-)UAAA 9361 A--UA-<--- ---------- ---------- -------->u gcgaccc-ac aa-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---gccaa-> 9541 ---------- ---------- acac-gucgc accccuaa-- ---------- ---------- 9601 ---------- -----uuucu (guauuc--a acuaa)a-uc -aa------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|ua 9961 cc-(uaaagc a--)-gguaa ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (15)-Amphi 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.X.laevi 10775 bp RNA RNA 21-JAN-1985 DEFINITION Mitochondria Xenopus laevis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Xenopus laevis. ORGANISM Mitochondria Xenopus laevis. REFERENCE 1 (bases 1 to 16787) AUTHORS No information JOURNAL 9759-9774(1985) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: M10217 Phylo:Mitochondria,Animal,Amphibian,Xenopus BASE COUNT 594 a 345 c 292 g 409 t 9135 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U C--------- ----CAAAAA 301 |CCU--AGC| AUU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAU 841 UAA(ACCA)U UCUaaa---- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |-au-uuUA- -GUAU-A(-G GCGA)UAGAA -Caauc---- 961 -------<-- -----au--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AUAGCUAU AGAA-AA--- ---AGUACC( -GUAA-)GG- ---AAA-GA- 1681 UGaaauagaa augaaauaau uaac------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aacuuac 2041 --)------- -----CUC-G UACCUU(UU- GCAUA)AUGG |UCU-AGCCA GUcaua-au- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- cgaa->---- --(------) ---------- ---------- -uuucaguuu 2701 gac-uaCCCG AA-ACUAA-G CG-AUCUACU CCG-AGA-CA GCUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uuua) ---------- 2821 -GAGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAUCUC- CGAGUAG-GG 2881 GU(GuACAG) ACC-AAAC-G A-GCCUAGUG AUAGCU-GGU UGCUC--AGG AA-AUG-AAU 2941 (-AUAA)GUU CU-AC-CCUA AAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uagauuuuu 3121 a-ac-----a auuaaag-ua aaaaguc--- ---------- ---------- ---------- 3181 ----u----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------Ac-U -UAGG-AUUU AUUCA--AU- CA-GG(-GUA 3481 CAG)CCUGAU UG-AA----- -aCAGG(AUA -CAA)CCU-A uAaua-c-ug -gg-UAA--- 3541 --aga----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------uuau aaucuucaag gaaag-uuga g<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UCAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUG|U(A- AA)-|GACAG C(--GUCAAA )GC|-UCAc- ucaa--<--- 3841 --ucauuuaa cccuuuaauu aguauaacua a--u------ ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uAAA--ccc| c--c-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----acaau aCUGA-GC|- UA-UUCUAUa ---------- 4501 ---------- ---------- (-aac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| uaUAGAAGCA CUUAUGC-UA 4681 GA|ACUAGUA -AUGU-GAU- ---------- (acacga--- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuaaAUG UAA--gugua a|----auca 4801 gauc----ga ---------- ----(--aua aa)u-c|--a cugaua---- ---------- 4861 ---auuaa-- -cguc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -accg--|-- 6481 u--UAAUCU- -(AACACA)A G|AACAU--- ----(uua-c ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGACG -CAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------cu aUGAACCC|C GC---CUG-U UU(ACCAA)A AA-CAUUCGC 6841 CUCUUG|C-- ---------- ---------- (uuaaaaaac auu---)--- ---------- 6901 ------GUA- UAA-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CAAGU|G ACg------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aua)------ ---------- ---------| 7141 -u-GUC--AA C-|GG-C|-C -GCGGU-(AU --CUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-- |g-ucuu(-- -aau-)aaga ac|UG-GUAU GAACGGC--C A-CGAAGGUU 7261 CA-------- ---------- -------ACU GUCUCCUGCA UCCA-AU-CC ----AUUAAA 7321 CU|G|ACCU- -C-CG(U-GC AGAGG)CGGG GAU----AGA ACCAUAGAAC GAGAAG--CC 7381 CUAUGG-|-A GCUUU--AAA CU|--A-AAG AAC--UG--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --CuG-a-cC -Ua--aA-GU UUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA UAAAAAAUC- )CUCC-UU|G |a|agaau|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->a-gg-g-- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (ccuacca-- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 --cc-cuuuc accaa-gaa( -ccacca--- )uucua-agu -aa------- ---------- 8821 ---------- ---------c a--------- ---(aaauuu a)-------- -----ug-ac 8881 u|---auaau UGAUC-CAGU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------c cu)--|---A 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCAUUUCAAA 9061 AG(U--UCCU )AUCGACAAA --UGGGUUUA CG-ACCUCGA UGUU|GGa-A U|C|AGGGC| 9121 AU-CC-CAGU GG-UG(--CA -GC)CGCUAC UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGCCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----aagu- 9301 >--------- ---------- --a-UUU-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--AA-- gaggcca-au gu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----uuua> 9541 ---------- ---------- auaa-gccuc ucu------- ---------- -------cua 9601 ---------- ---uaucaau (guaguc--a acuaa)a-uu -ga-aaa-ua g--------- 9661 ---------- -------<-- ----aacuaa uacucu---- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|gc 9961 cc-(aagauu a--)-gggcu agcuagcgug ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.cunea 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Eleutherodactylus cuneatus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10944 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Eleutherodactylus cuneatus. ORGANISM Mitochondrion Eleutherodactylus cuneatus. REFERENCE 1 (bases 1 to 2627) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2627) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10944 BASE COUNT 594 a 334 c 255 g 396 t 9196 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----uaaaaa 301 |ccc--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGCGCCAU AAAU-AU--- ----GUACC( -GCAA-)GGG agaAAA-GA- 1681 UGaaauaaca augaaauacu uca------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA GUAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuuaacc 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGG |UUU-AACUA GUaa-a-au- 2101 caggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuacagucu 2701 gac-auCCCG AA-ACUAA-G UG-AGCUACU UUA-GGA-CA GCUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ------aau) ---------- 2821 -GAGCCAA-C CC-UUCUCU( GUUGCAA-A) AGAG-UGGGA --AGAUCUU- AAAGUAG-GG 2881 GU(A-AAAU) ACC-UAAC-G A-ACUUAGCG AUAGCU-GGU UAUUC--AGG AA-AAG-AAU 2941 (-UUUA)GUU CA-AC-cuaa agcu<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auaaaaaua 3121 cuua-----a uaaauauaaa cuua------ ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gc-u -uuag-AGCA AAUCA--GA- UA-GG(-UCA 3481 CAG)CCUACC UG-AA----- -aCAGG(AUA -CAG)CCU-C caccu-a-ug -gg-UAA--- 3541 --uac----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- --AAGU-A GGC(CUGAAA 3781 GC-A)-GCCA -CCUU|U(A- AA)-|A-CAG C(--GUCAAA )GC|-UUAg- cuau--<-ua 3841 uac---uuaa c--a--aau- ---------- ---uucuaaa auaaa----- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uu aaaa--ccc| ua-c-cu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ------uaau aCUGA-AU|- aa-uuccaua ---------- 4501 ---------- ---------- (uaua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| uaUGGAAGCU AUUAUGU-UA 4681 AA|ACAAGUA -ACau-gaa- g--------- (auac----- ---------- ---------- 4741 ---------- -----)---- ----c-|uuC U-cuuaaAUG UAA--acuua a|----guca 4801 gacc----gg ---------- ----(--aua aa)a-c|--a cugaca---- ---------- 4861 ---auuaa-- -cagc----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -ucug--|-- 6481 u--uaacCU- -(AACACA)A G|AACAU--- ----(uu--u ---------- ----aaGAA| 6541 |---AGAC-U U--AAAGAGA -AAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a auUGAuuC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|--- ---------- ---------- (aauaaauca ------)--- ---------- 6901 ---------- UAA-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- uc-)------ ---------- ---------| 7141 ---UGUU-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-C-U |GUUUUU(-U AAUU-)AAAG AC|CU-GUAU GAAAGGCAUC A-CGAGAAUC 7261 AC-------- ---------- -------ACU GUCUCCUUUC UUUA-GU-CA ----GUGAAA 7321 CU|A|AUCUC CC-CG(U-GA AAAAG)CGAG GAU----GUC UCUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGA CA|--a-aau aaa--ca--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cuug ---ccagccu acaccaaccg 7561 uauaccccca caac------ -auca----- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --ugu-u-ua -u---aa-GU CUUAGGUUG( 8161 GGG)CA-AC- C|GCGGAG(- --------UA AAAACAAAC- )CUCC-aa|g |c|ugaac|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->g-ga---- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uacu----- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---u-ccuaa acaaa-aag( -caacaa--- )cuuua-ugu -au------- ---------- 8821 ---------- ---------c a--------- ---(uaaac- -)-------- -----ug-ac 8881 a|---uaauu UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------uaua cu)--|---- 9001 UUGAUUAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCACUUCAAG 9061 AG(U--UCAU )AUCGAAAAG --UGGGCUUA CG-ACCUCGA UGUU|GG--A U|C|AAGGU| 9121 AC-CC-UGGU GG-UG(--CA -GC)CGCUAC CAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AACCUC- --ACGCGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----aaga- 9301 >--------- ---------- --g-CUC-UU UC--(CAGU- AC(-GAAA)G GACA-)AAAA 9361 C--AG-- auggccu-au au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----auccu> 9541 ---------- ---------- acaa-gccgu accu------ ---------- -------aau 9601 ---------- ---aacuucu (gaccac--u cucaa)a-aa -au-uau-ua uccuuccauu 9661 uua------- ---------- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|ua 9961 cuc(aagaua a--)gagaa~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.cates 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Rana catesbeiana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Rana catesbeiana. ORGANISM Mitochondria Rana catesbeiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X12841 LOCUS X12841 2734 bp UNA 15-JUN-1989 DEFINITION Rana catesbeiana mitDNA for tRNA-Phe, tRNA-Leu, tRNA-Val, 12S rRNA and 16S rRNA. ACCESSION X12841 REFERENCE 1 (bases 1 to 2734) AUTHORS Okazaki,T. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases 1 to 2734) AUTHORS Nagae,Y., Fujii,H., Yoneyama,Y., Goto,Y. and Okazaki,T. TITLE Nucleotide sequence of the Rana catesbeiana mitochondrial small (12S) and large (16S) ribosomal RNA genes JOURNAL Nucleic Acids Res. 16, 10363-10363 (1988) STANDARD unannotated staff_entry BASE COUNT 912 a 620 c 496 g 706 t ORIGIN BASE COUNT 550 a 356 c 270 g 409 t 9190 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----CCAAAA 301 |UCU--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 CAA(AUCA)U UUUaa----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |cau-uaUA- -GUAC-A(-G GCGA)UCGAA -Aaauu---- 961 -------<-- ----ucu--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGCGCUUC AGAC-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauagaa augaaauaau cuu------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AUCA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auaaccu 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGG |UCU-AGCCA GUcua--cu- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------uaa aacu->---- --(------) ---------- ---------- -uuuuaguuu 2701 gcc-cuCCCG AA-ACUAA-G UG-AGCUACU UCA-GAA-CA GUCC------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uaug) ---------- 2821 -GGACCAA-C CC-AUCUCU( GUUGCAA-A) AGAG-UGGGA --AGAUUCU- UAAGUAG-AG 2881 GU(G-AUAA) GCC-UACC-G A-ACUUAGAG AUAGCU-GGU UGUUC--AGG AA-AAG-AGU 2941 (-CUUA)GCU CU-AC-CUUA AGCU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -cucucuauu 3121 aaac-----u aagaaauccc aaa------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GC-U -UAAG-AGCU AUUCA--AA- UA-AG(-GCA 3481 CAG)CUUAUU UG-AA----- -aCAGG(AAA -CAA)CCU-c uaaca-c-cg -gg-UGA--- 3541 --auu----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUU|U(C- AA)-|aaa-G C(--GUUAAA )GC|-UUAa- cuau--<--- 3841 --aaauuacu aau--aauac cuaaaauau- ---u------ ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|aa uuaa--ccc| u--u-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----uuccu aCUGA-AC|- UA-UUUUAUa ---------- 4501 ---------- ---------- (uccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| uaUAAAAGCA AUUAUGC-UA 4681 GA|ACUAGUA -ACaa-gaa- a--------- (uugau---- ---------- ---------- 4741 ---------- -----)---- ----u-|UUC U-ccuaaAUG UAA--guaua a|----acca 4801 aaau----gg ---------- ----(--acc au)c-u|--g uuggug---- ---------- 4861 ---auuaa-- -cgca----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -aacg--|-- 6481 u--UAACCU- -(UACACU)A G|aACAU--- ----(ucc-- ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAGA -AAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u uuUAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|--- ---------- ---------- (auaaaaca- ------)--- ---------- 6901 ---------- UAA-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aa-)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCCUU(-U AAAU-)AGGG AC|UU-GUAU CAACGGCACC A-CGAGGGCU 7261 AU-------- ---------- -------ACU GUCUCCUUUC UCCA-AU-CA ----GUGAAA 7321 CU|G|AUCUC CC-CG(U-GA AGAAG)CGGG GAU----UAU AAUAUAAGAC GAGAAG-ACC 7381 CCAUGG-|-A GCUUU--AAA CU|--C-AUC AUA--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--ccucu (--------- ---au--gcc 7561 cu-auaucaa cuuacaca-- )agaaacc-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGU-A-UG -CU---A-GU UUUAGGUUG( 8161 GGG)GG-AC- C|ACGGAG(- --------UA UAAUUAAAC- )CUCC-AU|A |a|caaau|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->g-gg---- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (cuaaca--- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---c-ccuua ucuac-gag( -auacac--- )cucua-aga -a-------- ---------- 8821 ---------- --------uu a--------- ---(cuaaac -)-------- -----ua-au 8881 g|---uuuaa UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua au)--|---- 9001 UUGAUCAAU- |GAA-CCAAG UUACCC|UGG G|GAUAACAG |C-GCA-A-U CUACUUCAAG 9061 AG(C--CCCU )AUCGACAAG --UAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGGU| 9121 AU-CC-UAGU GG-UG(--CA -GC)CGCUAC UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AACCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- -----aagu- 9301 >--------- ---------- --g-CUU-CC CC--(UAGU- AC(-GAAA)G GACC-)GGGG 9361 C--AA-- auggcca-au gu-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uuuuaa> 9541 ---------- ---------- acaa-gccau auuc------ ---------- -------ucu 9601 ---------- ---cacuaau (gaaaua--a ucuua)a-uu -gg-aca-ag a--------- 9661 ---------- -------<-- ----ccuauu auaua----- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|gu 9961 ucu(-aaauc ---)agaaca u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.pipie 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Rana pipiens.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10945 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Rana pipiens. ORGANISM Mitochondrion Rana pipiens. REFERENCE 1 (bases 1 to 2613) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2613) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10945 BASE COUNT 537 a 363 c 278 g 403 t 9194 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----CCAAAA 301 |UCU--AGC| CUU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGCGCUUU AGAC-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GA- 1681 UGaaauagaa cugaaauaac cuu------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AACA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acacccc 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGG |UCU-AGCUA GUcua--ca- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------uga aacu->---- --(------) ---------- ---------- -uuu-aguua 2701 guc-cuCCCG AA-ACUAA-G CG-AGCUACU UCA-AAA-CA GCCC------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aaug) ---------- 2821 -GGCGUAA-C CC-UUCUCU( GUUGCAA-A) AGAG-UGGGA --AGAUUUU- CAAGUAG-AA 2881 GU(G-AAAA) GCC-UACC-G A-GCUUAGAG AUAGCU-GGU UAUUC--AGG AA-AAG-AGU 2941 (-UUUA)GCU CU-AC-CUUA AGCU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -ucuuuauga 3121 cacc-----u aacaaacccu aaa------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GC-U -UAAG-AGCU AUUCA--AA- UA-AG(-GCA 3481 CAG)CUUAUU UG-AA----- -aCAGG(AUA -CAA)CCU-a caaua-c-ug -gg-UAA--- 3541 --aua----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AAAGu-U GGC(CUAAAA 3781 GC-A)-GCCA -CCUU|-(A- AA)-|AA-AG C(--GUUAAA )GC|-UUAg- uucu---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ga ucaa--ccc| uu-u-au|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ------cccu aCUGA-AU|- UA-UUUUAUa ---------- 4501 ---------- ---------- (uccu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| uaUAAAAGUA AUAAUGC-UA 4681 GA|ACUAGUA -ACaa-gaa- a--------- (cugccca-- ---------- ---------- 4741 ---------- -----)---- ------|UUC U-ccuaaAUG CAA--gcaua a|----acca 4801 gaau----ag ---------- ----(--aca cc)c-u|--a cuggua---- ---------- 4861 ---aucaa-- -cgua----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -uacg--|-- 6481 u--UAACCU- -(UACACU)A G|aGCAU--- ----(uuc-- ------)--- ----AGGAA| 6541 |---AGAU-U A--AAAGAGA -AAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c uuCAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|--- ---------- ---------- (aaaaaaua- ------)--- ---------- 6901 ---------- UAA-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aa-)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUA)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUCUU(-U AAUU-)GGGG AC|UC-GUAU CAACGGCAUC A-CGAAGGCU 7261 GC-------- ---------- -------ACU GUCUCCUUUC UCUA-AU-CA ----GUGAAA 7321 CU|G|AUCUC CC-CG(U-GA AGAAG)CGGG GAU----AAA AUUAUAAGAC GAGAAG-ACC 7381 CCAUGG-|-A GCUUC--AAA CU|--C-AUC AUG--CA--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--acucu (--------- ---gu--ccu 7561 cc-auauccc uuaauuca-- )agagaug-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --UGC-A-UG -UU---A-GU UUUGGGUUG( 8161 GGG)GG-AC- C|UCGGAG(- --------UA UAACUUAAC- )CUCC-AA|A |a|caaau|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->g-gg-u-- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uaac----- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 --ac-cuuua uccgc-gag( -aaacac--- )cucua-aga -au------- ---------- 8821 ---------- ---------u a--------- ---(uuaaac -)-------- -----ua-au 8881 g|---cuuuu UGAUC-CGA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u aa)--|---- 9001 UCGAUCAAU- |GGA-CCAAG UUACCC|UGG G|GAUAACAG |C-GCA-A-U CUACUUCAAG 9061 AG(U--UCAU )AUCGACAAG --UGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGGU| 9121 AU-CC-UGGU GG-UG(--CA -AC)CGCUAC UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AACCCC- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AN)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- -----aagu- 9301 >--------- ---------- --g-CUG-CC CC--(UAGU- AC(-GAAA)G GACC-)GGAG 9361 C--AA-- auggcca-au au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---uu-aaa> 9541 ---------- ---------- acaa-gccau aauc------ ---------- -------uga 9601 ---------- ---cacuaau (gaacuu--a ucuaa)a-uu -aa-cua-ag a--------- 9661 ---------- -------<-- ----ccucuc accca----- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|gc 9961 ccu(-aaacu ---)agggca u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.mexic 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Ambystoma mexicanum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10947 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Ambystoma mexicanum. ORGANISM Mitochondrion Ambystoma mexicanum. REFERENCE 1 (bases 1 to 2581) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2581) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10947 BASE COUNT 624 a 262 c 253 g 416 t 9220 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G U--------- ----agaaau 301 |uau--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGAGCUAU AGAA-AU--- ---AGUACU( -GCAA-)AGG ---AAA-UA- 1681 UGaaauagaa augaaauaaa uaau------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-A C-AAAA GAAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuauac 2041 --)------- -----CUU-C UACCUU(UU- GCAUA)AUGG |UCU-AGCAA GUaa-a-ac- 2101 uuagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -u-aaaguua 2701 acc-ucCCCG AA-ACUAA-G CG-AGCUACU UUA-AAG-CA ACAU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auaa) ---------- 2821 -guguuaa-c cc-GUCUAU( GUGGCAA-A) AUAG-UGGGA --UGACUUU- UAAGUAG-UG 2881 GU(G-AAAA) GCC-UAAC-G A-GCUUAGUG AUAGCU-GGU UGCUC--AAG AA-AUG-AAC 2941 (-UUAA)AUU CA-AC-uuua aaua<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuuuuuaaa 3121 caca-----a aaagaaacaa auaau----- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-u -uuua-AGCU AAUUA--AU- AA-AG(-GUA 3481 CAG)CUUUAU UA-AU----- -aAAGG(AAA -CAA)CCU-A gaua--a-ug -aa-UAA--- 3541 --aga----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -AUUGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCAG|U(A- AU)-|GAAAG C(--GUCACA )GC|-UCAa- cuua--<--- 3841 ---------- -------au- -aaaaccuu- a--uuauccc cauuaaacaa ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc aaaa--uuc| a--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----nnaugu aUUGA-GC|- ca-aucuau- ---------- 4501 ---------- ---------- (-auc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAUGUG CCUAUGC-UA 4681 GA|ACUAGUA -ACaa-gaa- ---------- (uuua----- ---------- ---------- 4741 ---------- -----)---- ------|-uc u-c-uauGUA CAU--gugua c|----auca 4801 gaac----ga ---------- ----(--aaa ac)u-c|--a cugaua---- ---------- 4861 ---auuaa-- -cguu----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -uacg--|-- 6481 u--uaaaCC- -(AACACA)G G|GGUACa-- ------aa-a ---------- ------GAA| 6541 |---AGAU-U A--AAAAUUU -AAAA-AGGA ACUCGGCAA- ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------uc aaagacuu|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUUG|C-- ---------- ---------- (auauuaa-- ------)--- ---------- 6901 ------GUA- UAA-GAGGCC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uua)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-c|-C -GCGGU-(AU -CAUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-C-U |GUCUUU(-U AAUU-)AAAG AC|CU-GUAU GAAUGGCAAA A-CGAGAGUC 7261 UA-------- ---------- -------ACU GUCUCUUUAA AUAA-AU-CA ----GUGAAA 7321 CU|A|AUCUC CC-CG(U-GC AGAAG)CGGG AAU----GAU ACCAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAA uu|--u-uac uua--ac--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uaua ---auuuuau auuauccuaa 7561 gggaaaaccu uauacuuu-- -uau------ ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -auau-u-aa -uaa-aA-AU UUUAGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------UA AAGAAAAAC- )UUCC-ga|g |a|ugaga|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------u uuaua-gaa( -ggacac--- )uucac-aaa -a-------- ---------- 8821 ---------- ---------u ag-------- ---(aaaaau -)-------- ----gua-ac 8881 a|-----uau UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u aa)--|---- 9001 UUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CUUCUCCAAG 9061 AG(U--UCUU )AUCGACGAG --UAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-AAAU GG-UG(--CA -GC)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----uuua- 9301 >--------- ---------- --a-CUU-CC CC--(UAGU- AC(-GAAA)G GGCC-)GGGG 9361 A--AG-- ugggcca-au ga-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----aaua> 9541 ---------- ---------- uuaa-gccca u--------- ---------- -------aac 9601 ---------- ---aacuauu (gaaaac--a acuaa)a-au -ag-acu-gu a--------- 9661 gacaa--uac ---------- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|ag 9961 ccu(aauaua a--)aggcuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.yonah 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Plethodon yonahlossee.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10948 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Plethodon yonahlossee. ORGANISM Mitochondrion Plethodon yonahlossee. REFERENCE 1 (bases 1 to 2479) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2479) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10948 BASE COUNT 577 a 320 c 239 g 370 t 9269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G U--------- ----uuuaaa 301 |ccu--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGCGCAAU AAAC-AU--- ---AGUACU( -GCAA-)AGG ---AAA-AA- 1681 UGaaauagaa augaaauaaa ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-A C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaua 2041 --)------- -----CUU-C UACCUU(UC- GCAUA)AUGG |UUU-AAUUA GUcuuc-ac- 2101 aacacaaa-- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- gauc->---- --(------) ---------- ---------- -ucu-agucg 2701 aau-acCCCG AA-ACUGA-A CG-AGCUACC CUC-AGG-CA GCAG------ ---------- 2761 -(-------- ---------- ---------- ---------- ----caugc) ---------- 2821 -gagcaAA-C CC-UUCUCU( GUAGCAA-A) AGAG-UGAGA --AGACCUC- AAGGUAG-AG 2881 GC(G-AAAA) ACC-UAAC-G A-GUCCAGAG AUAACU-GGU UACUU--AAG AA--UG-AAU 2941 (-UUUA)GUU CA-AC-uaaa agca<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -cacauauca 3121 ccaa-----a agacauaaa- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gc-u -uuua-UUAU AAUUA--AU- UA-GG(-GUA 3481 CAG)CCUAAU UA-AU----- -aCAGG(AUA -CAA)CCc-u aauaa-a-ug -aa-UAA--- 3541 --aga----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---cgu-a gac(uuaaga 3781 gc-a)-gcca -----|u(c- aa)-|AAAAG C(--GUCAAA )GC|-UUAa- cuuu--<--- 3841 --------ua a--auacucc --uauccuaa aauuuaaucu ua-------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-uc--uuc| c--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- --------gu aUUAA-GU|- aa-aucuau- ---------- 4501 ---------- ---------- (-aaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAAAU UUUCUGU-UA 4681 AA|AUUAGUA -AUaa-cgg- a--------- (cccccccc- ---------- ---------- 4741 ---------- -----)---- ------|--c u-cuacaaug caa--gugu- -|----guua 4801 g-------g- ---------- ----(--aua aa)--c|--- cua-ua---- ---------- 4861 ---auuaa-- -caau----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -aaug--|-- 6481 u--caacCC- -(AACACA)G G|agcac--- -----uua-- ---------- ----a-GAA| 6541 |---AGAU-U A--AAAGUUU -GAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- ---aacgu|C GC---CUG-U UU(ANCAA)A AA-CAUC-GC 6841 CUCCUG|--- ---------- ---------- (cuaaauuaa ua----)--- ---------- 6901 ---------- UAA-GAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a ccu)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -AAUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCAAA A-CGAAAGCC 7261 CA-------- ---------- -------ACU GUCUCAUCAA AUUA-AU-CA ----GUGAAA 7321 UU|G|AUAUC CC-CG(U-GC AAAAG)CGGA GAU----AAU UUUAUAAGAC GAGAAG-ACC 7381 CUACGG-|-A GCUUA--AAA CC|--u-aaa uua--au--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<----aua ---auuaaa- ---------- 7561 ---------- ---------- -ua------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --aau-a-au -ccaggG-CU UU-AGGUUG( 8161 GGG)CG-AC- C|ACGGGG(- --------AA UAAUAGAAC- )CCCC-ga|g |a|uauau|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------a guuaa-gaa( -aaacac--- )uucaa-aa- ---------- ---------- 8821 ---------- ---------u aac------- ---(accaca -)-------- ---guug-au 8881 g|----uaau UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u aa)--|---- 9001 UUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCAUAG 9061 AG(U--CCAU )AUCGACGAG --CGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAC AG-UG(--CA -AC)CGCCAU CAAA-GGU|U CGUU(UGUUC )AACAA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUU---- --|-|<---- ---------- ---------- ---------- -----acgua 9301 >--------- ---------- --a-ucc-uu cC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--AN-- auggcca-au gc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----aauau> 9541 ---------- ---------- guac-gccau caaaa----- ---------- ---------- 9601 ---------- ---acuuaau (gaaacc--a acuaa)a-ca -uu-aca-ca c--------- 9661 -ccca--ca- ---------- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|cc 9961 uc-(aaaaua ua-)-gaggc u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.inter 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Siren intermedia.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10946 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Siren intermedia. ORGANISM Mitochondrion Siren intermedia. REFERENCE 1 (bases 1 to 2615) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2615) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10946 BASE COUNT 631 a 268 c 245 g 433 t 9198 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----cuuaaa 301 |uuu--AAC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGCGUUAU UACU------ ---AGUACU( -CCAA-)AGG ---AAU-CA- 1681 UGaaauagaa auuaaauaaa uuaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA GAAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaauu 2041 --)------- -----CUU-A UACCUU(UU- GCAUC)AUGG |-AU-AGCAA GU-uca-ac- 2101 uuaacaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -uuuuaguua 2701 aac-auCCCG AA-ACUAG-A CG-AGCUACU CUA-AAG-CA AUAU------ ---------- 2761 -(-------- ---------- ---------- ---------- ------aaa) ---------- 2821 -gaacUAA-C CC-UNNUCU( GUGGCAA-A) AGAG-UGGGA --UGACUUU- UGAGUAG-AG 2881 GU(G-AAAA) GCC-AAAC-G A-GCCUAGAG AUAGCU-GGU UUCUC--AAG AA-AUG-GAU 2941 (-UUAA)GUU CA-GC-auua agca<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uucuagcac 3121 uaca-----a agcac----- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gc-u -uaag-AGUU AAAUA--AU- UC-AG(-GUC 3481 CAG)CUGAAU UA-UU----- -aaAGG(AAA -CAA)CCU-a uauaa-a-ug -aa-UAA--- 3541 --gga----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -------uua uauuuauuaa agaaa-uaaa u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUUGU-A GGC(UUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)-|AAUAG A(--GUCAAA )AC|-UUAa- uuua---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|ac caaa--uuc| au-u-au|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ------accu aUUGA-GA|- ca-uucuau- ---------- 4501 ---------- ---------- (uaac---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUAGAAAAG UUUAUGC-UA 4681 GA|ACUAGUA -AUaa-gaa- ---------- (aaua----- ---------- ---------- 4741 ---------- -----)---- ------|uuc u-cuu-aAUG CAA--gugua a|----auca 4801 gaac----gg ---------- ----(--aaa au)c-c|--a cugaua---- ---------- 4861 ---auuaa-- -cgaa----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -aucg--|-- 6481 u--uaaaCC- -(AACACA)G G|AGCAU--- ------aa-u ---------- ----a-GAA| 6541 |---AGAU-U A--AAAGAAC -UAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------c- cuaaauuC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|--- ---------- ---------- (naauacuaa aua---)--- ---------- 6901 ---------- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uua)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UAUA)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|CU-GUAU GAAUGGCAAA A-CGAGAAUU 7261 CA-------- ---------- -------ACU GUCUCUUAGU UCUA-AU-CA ----AUGAAA 7321 CU|A|AUCUU CC-CG(U-GC AGAAA)CGGG AAU----AUA AAUAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAA CA|--u-aaa cua--cc--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uauu ---uauacua aacua-cuca 7561 aa-a--g-au uaaauguau- -aguucuuag c--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --auu-a-gc -cu--aa-GU UUUUGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------UA UAAAGUAAC- )UUCC-ga|g |a|ugaac|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 --------ug cauua-gaa( cuuacag--- )uucaa-uga -a-------- ---------- 8821 ---------- ---------u aa-------- ---(aaaau- -)-------- ----uuaauc 8881 a|----uaau UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u uu)--|---- 9001 UUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUCUGAG 9061 AG(U--CCUU )AUCGACGAA --UGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-AAAU GG-UG(--CA -GC)AGCCAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CGGUUUCUAU 9241 CU|AUA---- --|-|<---- ---------- ---------- ---------- -----acaaa 9301 >--------- ---------- --g-UCU-UU UU--(CAGU- AC(-GAAA)G GACC-)AAAA 9361 A--GA-- aaagcca-au au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----auuaa> 9541 ---------- ---------- auau-gcugu auu------- ---------- -------uuu 9601 ---------- ---aauuguu (gaaaac--a aauaa)a-ac -aa-uau-aa aacacaagau 9661 ua-------- ---------- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|ag 9961 cuc(aagaac a--)gagcu~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.I.banna 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Ichthyophis bannanicus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10949 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Ichthyophis bannanicus. ORGANISM Mitochondrion Ichthyophis bannanicus. REFERENCE 1 (bases 1 to 2588) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2588) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10949 BASE COUNT 606 a 340 c 250 g 360 t 9219 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----uacaua 301 |gcu--AGC| UCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaaaagaa auuaaacaaa ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CCU-G UACCUU(UU- GCAUC)AUGA |UCU-AGUAA GUcaau-ua- 2101 gaggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuaagucu 2701 cuc-ucCCCG AA-ACUAA-A UG-AGCUAUU UAA-GAG-CA GCUA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----ccau) ---------- 2821 -GAGCGAA-C CC-GUCUAU( GUGGCAA-A) AUAG-UGGGA --AGACUCU- UAAAUAG-AG 2881 GU(G-ACAA) ACC-AAAC-G A-ACCUAGUG AUAGCU-GGU UACUC--AAU AA-ACA-AGU 2941 (-UUUA)GCU UA-AC-cuua aacc<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaucaaaa 3121 ugac-----a aaaauauaga uuaaa----- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gu-u -caag-AGCU AUUCA--UU- AG-AG(-GUA 3481 CAG)CUCUUA UG-AA----- -aaAGG(AAA -CAA)CCU-A cAuca-c-ug -gg-UAA--- 3541 --uga----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- --CAGU-U GGC(CU--AA 3781 GC-A)-GCCA -CCU-|A(C- CA)-|GAAAG C(--GUCACA )GC|-UCAc- acau--<--- 3841 ------uuaa ------aauu ucaauaaaau a--------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc aaaa--ccc| a--a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----caaca aCUGA-GU|- ua-acccau- ---------- 4501 ---------- ---------- (auaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aUGGAUAAA UUAAUGC-UA 4681 GA|AUAAGUA -AUua-gaa- aa-------- (cauga---- ---------- ---------- 4741 ---------- -----)---- ---uu-|uuc u-cc-gugcg aac--ccgua a|----auca 4801 gauc----ga ---------- ----(--acu aa)u-c|--a cugaua---- ---------- 4861 ---auuac-- -cgac----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -cucg--|-- 6481 u--uaacCC- -(CACACA)G G|cucug--- -----caaca ---------- ----acGAA| 6541 |---AGAC-A A--AAAGACA -AAGA-AGGA ACUCAGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u aaaaccuu|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUAG|--- ---------- ---------- (caaaacuaa ua----)--- ---------- 6901 ---------- UUA-GAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aaa)------ ---------- ---------| 7141 ---CUUU-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUUC(-U AAAU-)AAAG AC|UA-GUAU GAACGGCAAA A-CGAAGGUC 7261 UA-------- ---------- -------ACU GUCUCCUUUG UCUA-CU-CA ----AUGAAA 7321 UU|G|AUCCU CC-AG(U-AC AAAAG)CUGU AAU----AAA AUAACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAA CA|--c-acu aga--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--gugca --------ac cuuuuuuaac 7561 uuca------ ---------- -ugcauc--- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -aauu-c-ca -ca--cU-GU UUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA CACUUAA-c- )CUCC-ga|g |a|ugaca|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- -ugcc-agg( -aaacaau-- )ccuaa-aca -u-------- ---------- 8821 ---------- ---------c ag-------- ---(aaaa-- -)-------- ----cug-ac 8881 a|----uaau UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------uuaa cu)--|---- 9001 UUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUUUAAG 9061 AG(C--CCAU )AUCGACAAG --AGGGCUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAU| 9121 AA-CC-UGAC AG-UG(--UA -AC)CGCCGU CAAA-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--AAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUU---- --|-|<---- ---------- ---------- ---------- -----acgug 9301 >--------- ---------- --a-UUU-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--AA-- auggcca-au gc-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----aauau> 9541 ---------- ---------- guac-gccau caaaaac--- ---------- ---------- 9601 ---------- -----uuaau -gaaacc--a acuaa-a-ca -au-aca-ca aaacaca--- 9661 ---------- ---------- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|cc 9961 uc-(aaaaua ua-)-gaggc u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Epic.sp 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Epicrionops sp.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10950 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Epicrionops sp. ORGANISM Mitochondrion Epicrionops sp. REFERENCE 1 (bases 1 to 2680) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2680) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10950 BASE COUNT 592 a 414 c 264 g 345 t 9160 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----uaacaa 301 |ccu--AGC| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-GGAGCCAU ACAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 UGaaaaagaa augaaacaac ccauc----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--aucagcc 2041 --)------- -----CCC-G UACCUU(UUc GCAUC)AUGA |UCU-AGCAA GAacauucg- 2101 aaggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -ugaa>---- --(------) ---------- ---------- -uuucagucu 2701 uac-ccCCCG AA-ACUAG-A CG-AGCUAUU UAA-AAG-CA ACCC------ ---------- 2761 -(-------- ---------- ---------- ---------- -------cc) ---------- 2821 -uggauaa-u CC-GUCUCU( GUGGCAA-A) AGAG-UGGAA --AGACUUU- UAAAUAG-AG 2881 GC(G-ACAA) ACC-UAAC-G A-GCCUAGUG AUAGCU-GGU UGCUC--GAU UA-AUG-AGU 2941 (-AUAA)GCU CA-GC-CUUA AaUc<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaucaaaa 3121 uaau-----c aaaccauaga cauaaaa--- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-u -uaag-ACCU AUUCA--UC- AG-AG(-GUA 3481 CAG)CUCUCA UG-AA----- -aaAGG(AUA -CAU)CCU-A cAaca-u-cg -gg-UAA--- 3541 --uga----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -CAUGU-U GGC(CUAAAA 3781 GC-A)-GCCA -UCA-|N(C- CA)-|GANAG C(--GUCACA )GC|-UCAn- augc--<--- 3841 --aaccuaaa c-uuauaauu acuauuacuu u--------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc agaa--ccc| ac-c-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ------acca aACGA-GC|c ca-uuuaua- ---------- 4501 ---------- ---------- (acua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -uAUACCAAG UCGAUAC-UA 4681 GA|AUUAGUA -ACaa-gaa- aa-------- (caaga---- ---------- ---------- 4741 ---------- -----)---- ---uu-|uuc u-caaaggcc aag--cugua a|----guca 4801 gacc----gg ---------- ----(--acc ca)a-c|--a cuaaca---- ---------- 4861 ---acuac-- -cgac----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -accg--|-- 6481 u--uaacCC- -(GACACA)G G|agcgc--- -----auuc- ---------- ----acGAA| 6541 |---AGAU-U U--AAAGAUA -AAGA-AGGA ACUAGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-----caau caagguCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GU 6841 CUCUAG|--- ---------- ---------- (caaacauca cauaca)--- ---------- 6901 ---------- UUA-GAGAUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uug)------ ---------- ---------| 7141 ---AUUC-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|UA-GUAU GAACGGCAAA A-CGAGGACU 7261 UA-------- ---------- -------ACU GUCUCCUUUA UCCU-AU-CA ----GUGAAA 7321 UU|G|AUCUU UC-CG(U-AC AAAAG)CGGA AAU----AAC ACCACAAGAC GAGAAG-ACC 7381 CCAUGG-|-A GCUUC--AAA CA|--c-gca guc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-----cu -----acauu acacaaucua 7561 ccacaaaaca uga------- --aga----- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccug-a-cu -cc--cU-GU UUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------CA AUAUCAACC- )CUCC-ga|g |a|ugaua|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- -acca-ccu( -aaacua--- )aggaa-cac -cccccaaag ua-------- 8821 ---------- --------uc ag-------- ---(aaauu- -)-------- ----cug-ac 8881 a|----caau UGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ac cc)--|---- 9001 UUGAUCAAC- |GAA-CCAAG UUACCC|UGG G|GAUAACAG |C-GCC-A-U CCUUUCAAAG 9061 AG(U--CCCC )AUCAACGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAU| 9121 A--CC-AAGU G--UG(--CA -AC)AGCCAC UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUG---- --|-|<---- ---------- ---------- ---------- -----aaua- 9301 >--------- ---------- --a-UCU-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--GA-- acggcca-au au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---auaaau> 9541 ---------- ---------- auaa-gcc-- ---------- ---------- ---------- 9601 ---------- ----cucccu (gaaaac--a acuaa)a-aa -ca-aaa--- ---------- 9661 ---------- ---------- ----cagggc cucaccccc- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|ac 9961 ccc(aaaaua uaa)gggguu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.natan 10775 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Typhlonectes natans.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10951 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Typhlonectes natans. ORGANISM Mitochondrion Typhlonectes natans. REFERENCE 1 (bases 1 to 2593) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2593) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y10951 BASE COUNT 587 a 386 c 264 g 331 t 9207 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----cgcacg 301 |acu--AGC| UCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- --------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GAAGCAAU AGAU-AU--- ---AGUACC( -GCAA-)GG- ---AAC-GC- 1681 UGaaagagaa auuaaauaaa aacuu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--accaccc 2041 --)------- -----UCU-G UACCUU(UU- GCAUC)AUGA |UUU-AACAA GUcc---ac- 2101 ugggauaaaa ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -gccu>---- --(------) ---------- ---------- --cuuaaccc 2701 agc-ccCCAG AA-ACUAG-A CG-AGCUAUU UUU-AAG-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auuaca) ---------- 2821 -gggcaaa-C UC-AUCUCU( GUGGCAA-A) AGAG-UGAGA --AGACUUU- CAAAUAG-AG 2881 GU(G-ACAC) GCC-UACC-G A-GCCUAGUG AUAGCU-GGU UGCUC--AAU AA-ACG-AGU 2941 (-CUAA)GCU CC-AC-uuua agcc<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -uuaucaaac 3121 guaa-----g accacauaaa cauuaaa--- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ac-u -uaaa-AGUC AUUCA--CA- AG-AG(-GUA 3481 CAG)CUCUUA UG-AA----- -ccAGG(AGA -CAA)CCU-A aAaaa-a-ug -gg-UAA--- 3541 --uga----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------uuaa acuauuuaag gaaaa-uug- u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CCAGU-G GGC(CUAAUA 3781 GC-A)-GCCA -CCUG|U(A- UU)-|AACCG C(--GUCACA )GC|-GCAa- ccaa--<--- 3841 ----a-uuaa -auccaaaaa uacc-aacua ccu------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|cu caaa--ccc| ca-c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -----gcaca aAUGA-GC|- ca-accuaua ---------- 4501 ---------- ---------- (cacaccc)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| uaUAGAACAA UUAAUGU-UA 4681 AA|ACUAGUA -ACaa-gaa- ag-------- (caccc---- ---------- ---------- 4741 ---------- -----)---- ---cu-|uuc u-cc-acgca uaa--gugua a|----gcua 4801 uaac----gg ---------- ----(--acc gc)c-c|--a auagca---- ---------- 4861 ---auuac-- -cgac----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -accg--|-- 6481 u--uaacCC- -(AACACA)G G|acugc-a- ---------- ---------- ---aacGAA| 6541 |---AGGC-U A--AAAGACA -CUGA-AGGA AUUAAGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- caaagcuu|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCUAG|C-- ---------- ---------- (uaacccgac ac----)--- ---------- 6901 ------GUA- UUA-GAAGCA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uug)------ ---------- ---------| 7141 ---AUUU-AA C-|GG-C|-C -ACGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUUUUU(-U AAAU-)AAAG AC|UU-GUAU GAAUGGCAAA A-CGAAAGCU 7261 UA-------- ---------- -------ACU GUCUCCACUG UCCA-GC-CA ----GUGAAA 7321 CU|G|AUCUU CC-UG(U-UC AAAAG)CAGG AAU----AAA AAUGUAAGAC GAAAAG-ACC 7381 CUAUGG-|-A ACUUU--AGA CA|--c-aaa uca--gc--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uaug ---------- -------cca 7561 acagaccgca ---------- -uaug----- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-g-au -cc--aC-AU CUUUAGUUG( 8161 GGG)CG-AC- U|GCGGAG(- --------aa -cAAAAAUC- )CUCC-gu|g |a|uaucu|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 -----acuaa auuac-aca( -aaacua--- )aguac-caa -gacacuu-- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------ga 8881 a|---acagc UGAUC-CAAU ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a aa)--|---A 9001 UUGAUCAAC- |GAA-CUAAG CUACCC|UAG G|GAUAACAG |C-GCA-A-U CUUCUUACAG 9061 AG(G--CCAU )AUCGACAAG --AAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAU| 9121 AU-CC-AGAC AG-UG(--UA -GC)CGCUGU CACA-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--AAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAC 9241 CU|ACA---- --|-|<---- ---------- ---------- ---------- -----aauaa 9301 >--------- ---------- --a-uuu-cu uc--(CAGU- AC(-GAAA)G GACC-)GAAG 9361 A--AA-- agggcca-au au-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uuaau> 9541 ---------- ---------- acaa-gcccu aag------- ---------- -------cac 9601 ---------- ---aaaacau (gacaac--a acuaa)a-cg -cc-aau--- ---------- 9661 ---------- ---------g cuaca----- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|cc 9961 agc(cccaag ac-)aaugg~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (9)-Echino 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.pecti 10775 bp RNA RNA 11-JAN-191 DEFINITION Asterina pectinifera. ACCESSION No information KEYWORDS No information. SOURCE Asterina pectinifera. ORGANISM Asterina pectinifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D16387 LOCUS STFMTMG 16260 bp DNA INV 29-JUL-1994 DEFINITION Mitochondrion Asterina pectinifera gene. ACCESSION D16387 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATPase 6; ATPase 8; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome oxidase subunit 1; genome; mitochondrial DNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Asterina pectinifera (organelle Mitochondrion Asterina pectinifera) ovary DNA. ORGANISM Mitochondrion Asterina pectinifera Eukaryota; Animalia; Eumetazoa; Echinodermata; Asterozoa; Stelleroidea; Asteroidea; Spinulosida; Asterinidae. REFERENCE 1 (sites) AUTHORS Himeno,H., Masaki,H., Kawai,T., Ohta,T., Kumagai,I., Miura,K.-i. and Watanabe,K. TITLE Unusual genetic codes and a novel gene structure for tRNA (Ser AGY) in starfish mitochondrial DNA JOURNAL Gene 56, 219-230 (1987) MEDLINE 88056325 REFERENCE 2 (sites) AUTHORS Jacobs,H.T., Asakawa,S., Araki,T., Miura,K.-i., Smith,M.J. and Watanabe,K. TITLE Conserved tRNA gene cluster in starfish mitochondrial DNA JOURNAL Curr. Genet. 15, 193-206 (1989) MEDLINE 89354669 REFERENCE 3 (bases 1 to 16260) AUTHORS Asakawa,S., Himeno,H., Miura,K.-i. and Watanabe,K. TITLE Nucleotide sequence and gene organization of the starfish Asterna pectinifera mitochondrial genome JOURNAL Unpublished (1993) COMMENT Submitted (08-JUN-1993) to DDBJ by: Shuichi Asakawa Department of Industrial Chemistry Faculty of Engineering University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113 Japan Phone: 03-3812-2111 x7217 Fax: 03-5800-6951. NCBI gi: 517153 FEATURES Location/Qualifiers source 1..16260 /organism="Mitochondrion Asterina pectinifera" /mitochondrion /sequenced_mol="DNA" /tissue_type="ovary" BASE COUNT 5269 a 4001 c 2297 g 4693 t ORIGIN BASE COUNT 572 a 206 c 364 g 559 t 9074 others ORIGIN 1 |agccuuuaa aaggaguuug acuuuguuuc cacaacauuc guuaguaguu uuuaggugac 61 guagaaaucg caaucaaacu gggggguuua ccucugaagg uguguuguug agaguaagau 121 uuggaauaag aucauugggu uuaguuuguu uaccuguguu uauaucauua uuaaaauaau 181 uguuauauau uaau------ ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ----aaaauU U--------- ----uaaaag 301 |ACU--agc| uag------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----aaua 841 aga(agag)u cu-------- ---------- ---------- ---------- ---------- 901 ---------- ---------- |----aaGA- -GUAU-U(-G GUUA)AAGAA -Auuua---- 961 -------<-- ---auaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- a-aaagcuaa agug-gua-- ----GUACU( -GUGA-)AGG ---AAA-GU- 1681 UGaaauaaua ugaaagauaa ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uua-A A-aga- aaaagu---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----uaaa 2041 --)------- -----guuuG UACCUU(UU- GUAUG)AUGG |UUC-AAUAA GGuugu-gu- 2101 aaa------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------ua gugu->---- --(------) ---------- ---------- --------uu 2701 uau-aaCCCG AA-GCUGG-G CG-AGCUAGU GUA-UUC-UG CUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----aag-) ---------- 2821 -AGAGAGA-G CUuu-UACU( GUUGCAA-U) AGUA-AGGUu --ugaGGGU- ACAUUAG-GU 2881 GU(G-AAAU) GCu-uAUC-G C-GCUCAGGG AUAGCU-GGU UUUCC--UAG AA-AUUgGGU 2941 (-GUAA)GCU AA-AU-auug uuu------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< --cuaucauu 3121 guag-----u aauuauuuua cagaaua--- ---------- ---------- ---------- 3181 ----agaaag -uaguuuuug auagua---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gc-a -uaauuguaa gac-a--gg- aA-GG(-GAU 3481 AAG)CUUauu ua-gu----g c--aga-aga -uac-aaa-a gauuuuuaga aaauaauu-- 3541 ---------- -----cu-a- aauu--guaa aaa------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- -------(-- --)------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------uuu aUAGG-AG|- AA-UUUCA-- ---------- 4501 ---------- ---------- (uaagu-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| --UGAAAGUU AUAAUGU-UG 4681 AA|AUUAGUA -GAGA-GUA- a--------- (--gagca-- ---------- ---------- 4741 ---------- -----)---- ----u-|auu uuuugu-gga uuaa----uc a-----ggcc 4801 uaacau--ug ga-------- ---------- --)------- ---------- ---------- 4861 ----uggaa- -caau----- ---------- ---------- ---------- -------<-- 4921 uauucauuau cgggaaauua guuuguuaaa ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -guug--|-- 6481 ---UCUACU- -(AACACA)A G|uaaua--- ----(----- ------)--- ----uggu-| 6541 |---guaacc u--AAUUAAG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u aaAGAUUU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CCUUUG|u-- ---------- ---------- (aaagaaucu aac---)--- ---------- 6901 ------aua- UAA-AGGGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- uua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GCCUCU(-U AAAU-)GGGG GC|UG-GUAU GAAUGGCAAG A-CGGGAAUC 7261 AA-------- ---------- -------GCU GUCUCUCCCU UAU--au-c- ----UUGAAG 7321 UU|A|AUAUU UC-UG(U-GA AGAAG)CAGA AAU----GAG AUCGCAGGAC GAGAAG-ACC 7381 CUAUCG-|-A GCUUU--AGU AG|-aa--au aaga-ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uaacuu guuaauagug uuugu-gcug 7561 cu-aauucaa uuguuaaaaa caguuccuau aguuuuacug cuaaaaacau uaguguug-- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uau-a-ua -ua---A-UA CUUAGGUUG( 8161 GGG)CA-AC- C|GCGGAG(- --------AA UAAUUAU-C- )CUCC-GU|U |a|au---|< 8221 uuuauugaaa aaauaauuau uuuucaauau aagauuuauu uaaa------ ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------gag 8881 u|-----gau ccacuugaa- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a ug)--|---- 9001 gugAGCAAA- |AGA-AUAAG UUACCG|UAG G|GAUAACAG |C-GUA-A-U UUUUUUGGAG 9061 AG(U--UCAU )AUUGAUAAA --AAAGUUUG CG-ACCUCGA UGUU|GG--A U|C|GGGAU| 9121 UU-CC-UGGG GA-UG(--CA -GC)AGUUCC CGAU-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-C(GG GA)GCCAGGU CAGUUUCUAU 9241 CC|ACG---- --|-|<---- ---------- ---------- ----auuuua aaaaaaaua- 9301 >--------- ---------- --g-UUU-UU CU--(UAGU- AC(-GAAA)G GACC-)AGAA 9361 A--GG-<--- ---------- ---------- -------->c gguaccc-cu gc-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uuaaag-> 9541 ---------- ---------- guau-guacu guaacagugu ---------- ---------- 9601 ---------- -----ucugu (uaaaa---- ----a)a-ua aga~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.F.serra 10775 bp RNA RNA 19-MAR-1998 DEFINITION Mitochondrion Florometra serratissima.; . ACCESSION AF049132 KEYWORDS . SOURCE Mitochondrion Florometra serratissima. ORGANISM Mitochondrion Florometra serratissima. REFERENCE 1 (bases 1 to 16005) AUTHORS Scouras,A. and Smith,M.J. TITLE serratissima The complete mitochondrial genome of the crinoid Florometra JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16005) AUTHORS Scouras,A. and Smith,M.J. TITLE Direct Submission JOURNAL Submitted (17-FEB-1998) Biological Sciences, Simon Fraser University, 8888 University Blvd., Burnaby, BC V5A 1S6, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF049132 BASE COUNT 734 a 216 c 224 g 426 t 9175 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~aagac uaagcaauag 241 auuguaaauc uaauuaaaaa gguuaaauuc cuuuauuugu u--------a auaaauaaaa 301 |AAU--AGC| UCU------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---aua- aaagaa---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (gaccuuaaa 2041 a-)------- -----uuc-U UACCUU(UU- GUAUU)AUGG |UUU-AACaa caauaa-aa- 2101 ga-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------aua aaaa->---- --(------) ---------- ---------- --------uu 2701 caA-ACCCCG AA-ACCAA-G AG-AUCUAAU GAA-ACC-Cc aaca------ ---------- 2761 -(-------- ---------- ---------- ---------- ---uauggu) ---------- 2821 -uguaa---a guaU-UACU( GUUGCAA-A) AGUA-AAUaa --AGAGGAA- UCAUUAG-AC 2881 AU(G-AAAA) AUG-AAAC-G A-GCUUGGUA AUAGCU-GGU UUCCU--GAA AA-AUG-AGC 2941 (-UUAA)ACU CAugc-uuuu a--------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< auuaugacuu 3121 aaau-----a auauuaucau aaaaa----- ---------- ---------- ---------- 3181 -----uaaaa a---g-caa- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- -AACC--AA- AA-GG(-GAU 3481 AAA)CUUUUU GG-UU----u aagGAA(AAA -GCC)UAC-c uuaau-a-gu -ua-aaa--- 3541 --ucaaaaau uaaaaaa-a- gaauaauaaa c--------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->auagu-a GGC(CUAGAA 3781 GC-A)-GCCA -CCaa|a(a- ag)-|-AAAG C(--GUUAAA )GC|-aua-- -------- ---------- ---------| aaguuauaag AUAAUGU-UA 4681 AA|AUUAGUA -UUuu-uuu- ---------- ---------- ---------- ---------- 4741 ---------- ---------- -------ggu uaaaaaauuu uuaa----gc u-----auuc 4801 uaac------ ---------a aauau-auaa ug)------- -----g---- ---------- 4861 ---aa-gaaa gaaa------ ----|----- ---------- ---------- ---------- 4921 auauuuuuuu caagaaaa-- aaa-uuuuau aaaauagu-- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---uuuacc- -(aacacc)g g|aaacca-- ---------- ---------- ---aaaaau- 6541 ----uaa--a a--aaACAAG -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u aAAAGCUU|C GC---CUG-U UU(ACCAA)A AA-CAU--UG 6841 CUCCUU|--- ---------- ---------- (gaaaaauac uaaau-)--- ---------- 6901 ---------- AAG-GAGUA- CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CCC-A-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aaa)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUCUU(-U AAUU-)GAGG AC|UA-GUAU GAAAGGCAAC A-CGAAAGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UGAA-aa--- ----AAGAAA 7321 UU|A|UUAUC UU-CG(U-GA AGAAA)CAAA GAU----AAA AACGCAAGAC GAGAAG-ACC 7381 CUGUCG-|-A GCUUA--AGA AA|-au--uu uua--uag-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aauuaa aacacagaua auuuauauac 7561 uaaaaacca- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---aaua-aa -aa---U-AU CUUUGGUUG( 8161 GGG)CA-AC- C|ACGAAG(- --------AA AAAAAAA-C- )CUUC-GA|U |u|aa---|< 8221 aaaaagaaau aaacaaauuu aaaaauuuuu aaaau----- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 u|-----uaa aGAUC-CAG- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------aaaa ua)--|---- 9001 CUGAUCAAA- |GGA-AAAAG UUACCG-CAG G|-AUAACAG |C-GUU-A-U UCUCUUUAAG 9061 AG(U--UCAU )AUUGACAAG --AGAGUUUG CG-ACCUCGA UGUU|GG--A C|C|GGGAC| 9121 AC-CC-CAGA GG-UG(--CA -AC)AGCCUC UAAA-GGU|A GGUC(UGUUC )GACCU-UUA 9181 A--AGCCCU- --ACGCGAUC UGAGUUCAGA CC|GA-C(GC AA)GUCAGGU CAGUUUCUAU 9241 CU|ACG---- --|-|<---- ---------- ---------- ---------- -aaaaaagu- 9301 >--------- ---------- --a-guu-uu aU--(UAGU- AC(-GAAA)G GAau-)uuaa 9361 a--ac-u uaaaaaa-cu ac-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- -----ugaa- aacaaauaaa gaaaaacuua ucuuauaagu auuaaa---- 9541 ---------- ---------- guac-auuug acuucc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.lixul 10775 bp RNA RNA 19-JUL-1996 DEFINITION Mitochondrion Arbacia lixula.; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; D-loop region; F-0-ATPase subunit 6; F-0-ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION X80396 KEYWORDS 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; D-loop region; F-0-ATPase subunit 6; F-0-ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Arbacia lixula. ORGANISM Mitochondrion Arbacia lixula. REFERENCE 1 (bases 1 to 15719) AUTHORS De Giorgi,C., Martiradonna,A., Lanave,C. and Saccone,C. TITLE Complete sequence of the mitochondriac DNA in the sea urchin arbacialixula: conserved features of the echinoid mitochonfrial genome JOURNAL Mol. Phylogenet. Evol. 5, 323-332 (1996) STANDARD No information REFERENCE 2 (bases 1 to 15719) AUTHORS De Giorgi,C. TITLE Direct Submission JOURNAL Submitted (28-JUL-1994) C. De Giorgi, Nodo Nazionale Italiano, (Area di ricerca CNR-Bari), Via Amendola 168/5, 70126 Bari, ITALY STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X80396 BASE COUNT 578 a 258 c 269 g 449 t 9221 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~aaagU U--------- -----auaac 301 |UCU--AGG| CUA------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----agaa 841 cUU(AAUA)A Aaga------ ---------- ---------- ---------- ---------a 901 aa-------- ---------- |-aa-uuua- -cagG-U(-A UCAA)AUGAA -aauaa---- 961 -------<-- ---uuuuaac agugauc--- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- A-AGCUCAAC AGAA-ACA-- ----GUACC( -UAAA-)GGA ---AAg-GG- 1681 UGaaauaaua uuaauag--- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uac-A A-aaa- ggaAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--ccuaaua 2041 --)------- -----CUU-U UACCUU(GU- GUAUA)AUGG |AUU-AACGA CAcca--aa- 2101 gaa------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------aa aaga->---- --(------) ---------- ---------- --------uu 2701 cua-ugCUCG AA-ACUUG-G CG-AGCUAAC CcuaGUC-uu cUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uaga) ---------- 2821 -GAAuaaa-- --cc-UACU( GUUGCAA-U) AGUA-ggcua --aAAGAUU- AGGUUAG-AU 2881 GU(G-ACAU) ACU-AACC-G C-GCCCAGAG AUAGCU-AGC -UUCU--AAG AA-ACU-GGU 2941 (-CUAA)GCU AG-GC-UUUU GCU------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< u-cuaaaauu 3121 uuau-----a cguauauu-a aacuaua--- ---------- ---------- ---------- 3181 ----aaauua guuucuguau uuag------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- --au--ag-u AAAAA---gu gaGGC--CG- UG-UG(-GAU 3481 AAG)CACGCG GC-Cc----a agaUGG(AAA -ACC)CCA-a ucauu-u-ua -ga-uaa--- 3541 --agacaaaa aacauaa-u- aaauaguuua au-uaaa--- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- --------ac -->uaagu-a GGC(CUAAAA 3781 GC-A)-GCCA -CCUA|A(G- AA)-|AAAAG C(--GUUAAA )GC|-UUC-- -------- ---------- ---------| --UAAAAGAU AUAAUGU-UA 4681 AU|AUGAGUA -AGua-acu- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|ucu caccugauuu uuaa----ac a-----aaau 4801 uaaccu---- ---------- ---------- --)------- -----u---- ---------- 4861 ---gaauaa- -caaa----- ---------- ---------- ---------- -------<-- 4921 auauuuauuc uaaaaaaauu aucuuuuuau ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -uuug--|-- 6481 ---UCUUCC- -(AACACA)G G|agaga--- ----(----- ------)--- ---aaaaau| 6541 |---gaag-u a--AAAAAAU -AAGA-A-GA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u aUUAGUUU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CCCCCG|--- ---------- ---------- (aucacuuua uuuaua)--- ---------- 6901 ---------- UGG-GGGGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua uua)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGu-(AU -CUUG)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GUCUCC(-U AAAU-)AGAG AC|UA-GUAU GAAUGGCAAG A-CG-GAGCU 7261 UA-------- ---------- -------ACU GUCUCCUUuU UUUu-cu--- ----CAUAAA 7321 UU|C|ACUUU CC-CG(U-GA AGAGG)CGGG AAU----UUG CUCGCUAGAC GAGAAG-ACC 7381 CUGUCG-|-A GCUUA--AAG AA|-GU--UC UUa--GG--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuaaaa uuuacccuaa caucu-uacu 7561 aa-uuaauau agcuauaaga guuaaga-uu uuuagu---- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --cCC-A-AG -GA---U-AC UUUUGGUUG( 8161 GGG)CA-AC- C|ACGGAG(- --------AA AAUAAAU-C- )CUCC-GU|U |u|ac---|< 8221 uauauucaaa auguuuaaua auaagaagua cacuucuaua auaaauaaaa u--------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------uua 8881 a|----uaug UGACC-CGCu u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uu)--|--ag 9001 GCGAUUAAA- |GGA-AUAAG UUACCG|CAG G|GAUAACAG |C-GUU-A-U CUUUUUUGAG 9061 AG(U--UCAC )AUUGACAAA --AAGGUUUG CG-ACCUCGA UGUU|GG--A U|C|GGGAC| 9121 AU-CC-UAAG AG-UG(--CA -GA)AGCUUU UAAG-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-C(GA GA)GCCAGGU CAGUUUCUAU 9241 CU|ACG---- --|-|<---- ---------- ---------- ---------- ----agagc- 9301 >--------- ---------- --u-UCU-UU CU--(UAGU- AC(-GAAA)G GACC-)AGAA 9361 A--GA-<--- ---------- ---------- -------->g aaugucc-au gc-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -aaaaaau-> 9541 ---------- ---------- guaa-acauu -aacaaauua gaac~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.livid 10775 bp RNA RNA 11-JAN-191 DEFINITION Paracentrotus lividus. ACCESSION No information KEYWORDS No information. SOURCE Paracentrotus lividus. ORGANISM Paracentrotus lividus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: J04815 LOCUS J04815 15697 bp UNA 15-SEP-1989 DEFINITION Paracentrotus lividus mitochondrion. ACCESSION J04815 REFERENCE 1 (bases 1 to 15697) AUTHORS Cantatore,P., Roberti,M., Rainaldi,G., Gadaleta,M.N. and Saccone,C. TITLE the complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of paracentrotus lividus JOURNAL J. Biol. Chem. 264, 10965-10975 (1989) STANDARD unannotated staff_entry COMMENT Computer readable copy of sequence [1] kindly submitted by M. Roberti 26-JUL-1989. FEATURES from to/span description BASE COUNT 4830 a 3533 c 2697 g 4637 t ORIGIN BASE COUNT 580 a 291 c 275 g 405 t 9224 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~aaaaA U--------- ----uauuac 301 |CAU--AGG| CCU------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----AAAA 841 AAA(ACAC)U UUc------- ---------- ---------- ---------- ---------a 901 cu-------- ---------- |-au-uaAA- -GUAU-A(-A CCAC)UAGAA -Auuuu---- 961 -------<-- ---uuaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- A-GGACCAAC AGAA-AAA-- ----GUACC( -GAAA-)GGA ---AuAAUG- 1681 --aaauaaua cuaac----- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uua-A U-AUUA AG-AAGgaa- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---agauua 2041 --)------- --uucCUU-U UACCUU(GU- GUAUA)AUGG |AUU-AACGA GAcuac-cc- 2101 aaa------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------aa acua->---- --(------) ---------- ---------- --------uu 2701 uga-caCCCG AA-ACUGG-A CG-AGCUAAU CUU-CUC-CU CUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uua-) ---------- 2821 -GAAGAUUUA UCCU-UACU( GUUGCAA-U) AGUA-AGAGA --AAAGGGA- AGAUUAG-AU 2881 GU(G-AAAU) GCU-AACC-G C-GCCCAGAG AUAGCU-GGU UCUCC--AAG AA-AUU-AGU 2941 (-UUUA)GCU AA-GC-CUUU aaa------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< acaaaaauag 3121 aauu-----a cuuuaacaua uaaaacc--- ---------- ---------- ---------- 3181 ----aaaaag auugguuu-u uuuuuaa--- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gu-u -GAAG--guc aGGGC--UU- UA-GG(-GAU 3481 AAG)CCUAGA GC-CC----a aaaUGG(AAA -ACC)CCA-a uucug-a-ua -ga-aaa--- 3541 --agacaaua a-ccaca-u- aaauaguugc cccuaaa--- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->gaagu-a GGC(UUAGAA 3781 GC-A)-GCCA -CCUA|A(A- UA)-|AAAAG C(--GUUAAA )GC|-UUA-- -------- ---------- ---------| -uCAGAAGAG ACAAUGU-UA 4681 AU|AUGAGUA -AGaa-uac- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|UUU Caccugcguu uuau----ac c-----cccc 4801 uaaccu--ug ga-------- ---------- --)------- --aaua---- ---------- 4861 ---aaaacaa -ugag----- ---------- ---------- ---------- -------<-- 4921 --acuaaaaa aauuguuuua acu------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -auug--|-- 6481 ---UCCUCC- -(AACUCA)G G|agaaa--- ----(----- ------)--- ----GAAA-| 6541 |---AUUAau a--AAUUGGA -AAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------a cACAGUUU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 UCCCCG|--- ---------- ---------- (auaaauaac aaca--)--- ---------- 6901 ---------- UGA-GGAGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua aag)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUCUUC(-U AAAU-)AAAG AC|UA-GUAU GAAUGGCAAG A-CG-GAACU 7261 GA-------- ---------- -------ACU GUCUCUUUUC CAAa-ua-au ----CCGAAU 7321 UU|C|ACUUC UC-CG(U-GA AGAGG)CGGA GGgu---AAA AUCGUUAGAC GAGAAG-ACC 7381 CUGUCG-|-A GCUUUu-AGC AA|-AA--AC UUA--Ac--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uaguaa aacacuuaaa cuacu-cuag 7561 ua-aaugaau guaaguauaa cuaagcu-ac uaag------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --aUU-A-AG -UG---A-AG CUUUGGUUG( 8161 GGG)CA-AC- C|GCGGAG(- --------UA AAAGAAG-C- )CUCC-GC|U |a|aa---|< 8221 aaaauauuaa ccacuaaacu aaggacuacc auccuauaau caugaau--- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------gau 8881 u|----aaAU UGAUC-CAU- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uu ag)--|---- 9001 AUGACCAAA- |GGA-ACAAG UUACCG|CAG G|-AUAACAG |C-GUU-A-U CUUUUCUGAG 9061 AG(U--UCAC )AUUGACGAA --AAGGUUUG CG-ACCUCGA UGUU|GG--A U|C|GGGAC| 9121 AU-CC-UAAA GG-UG(--CA -GA)AGCUUU UAAG-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-C(GA AA)GC-AGGU CAGUUUCUAU 9241 CU|ACG---- --|-|<---- ---------- ---------- ---------- ----uauuu- 9301 >--------- ---------- --a-UUC-UC CU--(CAGU- AC(-GAAA)G GACC-)AGGA 9361 U--AA-<--- ---------- ---------- -------->g agugccc-au gc-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --agacau-> 9541 ---------- ---------- guauugcacu ucaauuaaaa acaug~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.pulch 10775 bp RNA RNA 24-NOV-1998 DEFINITION Mitochondrion Hemicentrotus pulcherrimus.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION AJ130798 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Mitochondrion Hemicentrotus pulcherrimus. ORGANISM Mitochondrion Hemicentrotus pulcherrimus. REFERENCE 1 (bases 1 to 1538) AUTHORS and Shimada,H. Ogawa,M., Amikura,R., Akasaka,K., Kobayashi,S., Kinoshita,T. TITLE from vegetal to animal pole in sea urchin embryos Graded distribution of mitochondrial 12S rRNA and 16S rRNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1538) AUTHORS Shimada,H. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Shimada H., Graduate Department of Gene Science, Faculty of Science, Hiroshima university, Kagamiyama, Higashihiroshima, Hiroshima 739-8526, JAPAN STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AJ130798 BASE COUNT 566 a 279 c 302 g 391 t 9237 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~gg| ugu------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----aAUA 841 GAA(AACA)C UCC------- ---------- ---------- ---------- ------uac- 901 ---------- ---------- |-uu-ucUA- -GUAA-A(-U UCAU)UUGAA -Aucuu---- 961 -------<-- ----auu--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- u-uaaCCGAA AGAA-ACA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauacuc auaau----- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-A C-UAAA AC-AGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (aaagacuag 2041 a-)------- -----CCUUU UACCUU(GU- GUAUA)AUGG |AUU-AACGA GAaaua-uaa 2101 ga-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------aaa guaau>---- --(------) ---------- ---------- ---------u 2701 cua-auCCCG AA-ACUGG-A CG-AGCUAAU CUU-uuc-uu CUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uua-) ---------- 2821 -GAAGAAU-A UCCC-CACU( GUUGCAA-U) AGUG-GAAAA --AAAGAAG- AGAUUAG-AU 2881 GU(G-AAAU) GCU-AACC-G C-GCCCAGAG AUAGCU-GGU UUCCC--AAA AA-AUU-AGU 2941 (-UUGA)GCU AA-GC-CCCu aug------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< agaaaaauaa 3121 aacu-----c cuuuaauagu auaa------ ---------- ---------- ---------- 3181 ------aaag aaucuuuuaa uuuu------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- --ug--aa-c -AGAG--guu aGGGC--CU- UA-AG(-GAU 3481 AAG)CUUAAG GC-CC----a aaaUGG(AAA -AAC)CCA-a cauug-a-ua -gu-aaa--- 3541 --agacaaca a-gcccc-a- aaauagcuau ucucgaa--- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ggaau-a GGC(CUAGAA 3781 GC-A)-GCCA -CUUA|A(C- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------- ---------- ---------| --CGGAAGAG ACAAUGU-UA 4681 AU|AUAAGUA -AGaa-agc- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|uuc accu-guguu uuau----gc g-----cuuu 4801 uaacca--ug ga-------- ---------- --)------- ---aga---- ---------- 4861 ---aaaaaca uugaa----- ---------- ---------- ---------- -------<-- 4921 --acuaagaa uccuguuuuu aag------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -aucg--|-- 6481 ---UCUUCC- -(AACUCA)G G|agaag--- ----(----- ------)--- ----aaaaa| 6541 |--uaa--ga ag-aagugaa -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u aaAGGUUU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 UCCCCG|--- ---------- ---------- (aauuuaaaa ca----)--- ---------- 6901 ---------- UAG-GGAGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua gag)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUCUCC(-U AAAU-)AGAG AC|UA-GUAU GAAUGGCAAG A-CGGAACCA 7261 AA-------- ---------- --------CU GUCUCuuuuu cac--aa-cc ----CUGAAU 7321 UU|C|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAA AUCGUUAGAC GAGAAG-ACC 7381 CUGUCG-|-A GCUUU-aAGC GG|-aa--ac uaa--aauu- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ----uuuacc cacuuuaccu uguga-cuaa 7561 cu-aauauau cuauccaaga gcaaguuuaa aacu------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --gUU-U-AG -Agg--A-AG CUUUGGCUG( 8161 GGG)CA-AC- C|GCGGAG(- --------UA AGAAGAU-C- )CUCC-GC|U |a|a----|< 8221 caagauauua uuauaaugag agcuacaauu cuacaaucaa aa-------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ------ugaa 8881 a|-----gag UGAUC-CAC- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ag)--|---- 9001 GUGAUCAAA- |GAA-ACAAG UUACCG|CAG G|GAUAACAG |C-GUU-A-U CUUUUCUGAG 9061 AG(U--UCAC )AUUGACGAA --AAGGUUUG CG-ACCUCGG UGUU|GG--A U|C|GGGAC| 9121 AU-CC-UAAG GG-UG(--CA -GA)AGCUUU UAAG-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-C(GA GA)GCCAGGU CAGUUUCUAU 9241 CU|ACG---- --|-|<---- ---------- ---------- ---------- ----uuaag- 9301 >--------- ---------- --g-UCU-CU CU--(UAGU- AC(-GAAA)G GACC-)AGAG 9361 A--GA-<--- ---------- ---------- -------->a agugucu-au gc-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -aaggaac-> 9541 ---------- ---------- guaa-gcacu ucaauuaaaa aaaaaaaaaa aaaaaaaaa~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.purpu 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Strongylocentrotus purpuratus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Strongylocentrotus purpuratus. ORGANISM Mitochondrion Strongylocentrotus purpuratus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X12631 Strongylocentrotus purpuratus LOCUS X12631 15650 bp UNA 15-JUN-1989 DEFINITION Sea urchin complete mitochondrial genome. ACCESSION X12631 REFERENCE 1 (bases 1 to 15650; enum. 1 to 15650) AUTHORS Jacobs,H.T. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases 1 to 15650; enum. 1 to 1560) AUTHORS Jacobs,H.T., Elliott,D.J., Math,V.B. and Farquharson,A. TITLE Nucleotide Sequence and gene organization of sea Urchin Mitochondrial DNA JOURNAL J. Mol. Biol. 202, 185-217 (1988) STANDARD unannotated staff_entry BASE COUNT 4499 a 3546 c 2872 g 4733 t ORIGIN BASE COUNT 559 a 282 c 292 g 392 t 9250 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~aaaaG U--------- ----uaugac 301 |UCU--AGG| ugc------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----aAUA 841 GAA(AACA)C UCU------- ---------- ---------- ---------- ------uac- 901 ---------- ---------- |-uc-ucUA- -GUAA-A(-U UCAU)UUGAA -Aucuu---- 961 -------<-- ----auu--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- u-uaaCCAAA AGAA-GCA-- ----GUACC( -GCAA-)GGG ---AAA-GA- 1681 UGaaauaccc auaau----- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-A C-UAAA AA-AGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (aaagacuaa 2041 a-)------- -----CCUGU GACCU-(GU- GUAUA)AUGG |AUU-AACGA GAaaua-uaa 2101 ga-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------aaa cuag->---- --(------) ---------- ---------- ---------u 2701 cua-auCCCG AA-ACUGG-G CG-AGCUAAU CUU-CCC-UC CUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----uua-) ---------- 2821 -GAAGGAU-A CCCC-CACU( GUUGCAA-U) AGUG-GAAAA --AAAGGGA- AGAUUAG-AU 2881 GU(G-AAAU) -CU-AACC-G C-GCCCAGAG AUAGCU-GGU UUCCC--AAA AA-AUU-AGU 2941 (-UUGA)GCU AA-GC-CUCu aua------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< agaaaaauaa 3121 aacu-----c cuuuaauauu auaa------ ---------- ---------- ---------- 3181 ------aaag aaucuuuuaa uuuu------ ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- --ua--ag-c -AGAG--guu aGGCC--CU- UA-AG(-GAU 3481 AAG)CUUAAA GC-CC----a caaUGG(AAA -AAU)CCA-a cauug-a-ua -gu-uaa--- 3541 --agacaaca a-gcccc-a- aaauagcuau ucucgaa--- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ggaau-a GGC(CUAGAA 3781 GC-A)-GCCA -CUUA|A(C- AA)-|GAAAG C(--GUUAAA )GC|-UCA-- -------- ---------- ---------| --CAGAAGAG ACAAUGU-UA 4681 AU|AUAAGUA -AGau-aac- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|uau accuagcguu uuau----ac g-----cuuu 4801 uaacca--ug ga-------- ---------- --)------- ---aga---- ---------- 4861 ---aaaacau -ugaa----- ---------- ---------- ---------- -------<-- 4921 --acuaaaaa uccucuuuuu aaa------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -gucg--|-- 6481 ---UCUUCC- -(AACUCA)G G|agaag--- ----(----- ------)--- ----aaaaa| 6541 |--uaaaa-- ---AAAGUGG -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- uaAGGUUU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 UCCCCA|--- ---------- ---------- (aaauuuaaa gcc---)--- ---------- 6901 ---------- UGG-GGAGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua gag)------ ---------- ---------| 7141 ---GUUA-AA C-|GG-C|-C -GCUGU-(AU -CUUG)ACCG U-|C(GGA)- GG-UAGCAUA 7201 AUC-AU-U-- |GUCUUC(CU AAUU-)AGAG AC|UA-GUAU GAAUGGCAAG A-GGGAAAUA 7261 AA-------- ---------- ---------u gacauUUUUU CUAu-ag-cc ----CUUAAU 7321 AC|U|ACCUC CC-CG(U-GA AGAGG)CGGG GAU----AAA ACGGUUAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUUuaAGC GG|-aa--GU UAA--Au--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuuaac acacuuaccu uguga-cuaa 7561 cu-aauauac cuauccaaca guaaguuuua aaca------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uUU-U-AG -Caa--A-AG CUUUGGUUG( 8161 GGG)CA-AC- -|GCGGAG(- --------UA AGAAGAC-C- )CUCC-GC|U |a|a----|< 8221 uaagauauua cuauaaaaag aauuacgguu cuacaaucaa aa-------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ------ugaa 8881 a|-----gaA UGAUC-CAC- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua ag)--|---- 9001 GUGAUCAAA- |GAA-ACAAG UUACCG|CAG G|-AUAACAG |C-GUU-A-U CUUUUCUGAG 9061 AG(U--UCAC )AUUGACGAA --AAGGUUUG CG-ACCUCGA UGUU|GG--A U|C|GGGAC| 9121 AU-CC-UAAG GG-UG(--CA -GA)AGCUUU UAAG-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-C(GA GA)GCCAGGU CAGUUUCUAU 9241 CU|ACG---- --|-|<---- ---------- ---------- ---------- ----uuaag- 9301 >--------- ---------- --g-UCU-CU CU--(UAGU- AC(-GAAA)G GACC-)AGAG 9361 A--GA-<--- ---------- ---------- -------->g agugucu-au gc-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -aaagaac-> 9541 ---------- ---------- guaa-gcacu ucaauuaaaa ac~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (9)-HEMICH 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.B.carno 10775 bp RNA RNA 21-APR-1998 DEFINITION Mitochondrion Balanoglossus carnosus.; . ACCESSION AF0510 7 KEYWORDS . SOURCE Mitochondrion Balanoglossus carnosus. ORGANISM Mitochondrion Balanoglossus carnosus. REFERENCE 1 (bases 1 to 15708) AUTHORS Castresana,J., Feldmaier-Fuchs,G. and Paabo,S. TITLE Codon reassignment and amino acid composition in hemichordate mitochondria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (7), 3703-3707 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15708) AUTHORS Castresana,J., Feldmaier-Fuchs,G. and Paabo,S. TITLE Direct Submission JOURNAL Submitted (25-FEB-1998) Institute of Zoology, University of Munich, Luisenstrasse 14, Munich D-80333, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF051097 BASE COUNT 466 a 381 c 295 g 356 t 9277 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- -GUAA-A(-G GCGA)UUGAA ---------- 961 ------------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- -----GUAAA ACUG-CAA-- ----GUACC( -GUAA-)GGG ---AAC-UA- 1681 UGaaa--aag cga------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ugaaa uagauguu-a agaacua--- ---------- ---------- ---------- 1861 ----->AAAA GAAGCG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CGC-G UACCUU(UU- GCAUC)AUGG |UUU-AGCAA ACcaa--ca- 2101 --ga-u-aa- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ag-------- ---------- ---------- ---------- ---ccaucuu 2701 u----UCCCG AA-GUCAG-A CG-AGCUAUU CCU-UUC-Ca gagg------ ---------- 2761 -(-------- ---------- ---------- -----uuaaa aguuaacgc) ---------- 2821 -ucuucgu-c cc-auUACU( GUCGCAA-U) AGUA-AAGGC --AGAGAAA- UGAAUAG-AG 2881 GU(G-AAAU) GCC-AACC-G C-GUCUGCCG AUAGCU-GGU UACAG--UCG AA-ACA-AGU 2941 (-AGAA)GCU UU-gc-acgc ccuc------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------g-g -gcga-ugUU AGGAU--UU- AA-GG(-GAC 3481 AAG)CUUUAA AU-UCca--g --aCAG(AAA -CAA)CUG-- cuaau-c-uu -aa-uaa--- 3541 --ggucaaua accacuu-a- auuuuucaau c--------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ------GU-A GGC(CUAGAA 3781 GC-A)-GCCA -Ccga|u(a- a-)-|aaauG C(--GUUACA )GC|-UUA-- ------------ ---------- 6781 ----|-(--- )--------- ucAGGUCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CCCCCG|a-- ---------- ---------- (--auaucca a-----)--- ---------- 6901 ------aca- UGG-GGGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uaa)------ ---------- ---------| 7141 ---UUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(GAA)- GG-UAGCACA 7201 AUC-AC-U-A |GCCCUC(-U AAAU-)AAGG GC|CG-GUAU GAAUGGCAAC A-CGAAGGCC 7261 UA-------- ---------- -------ACU GUCUCCUCUU UAac-ua--- ----ACGAAA 7321 CU|U|CUCUA GC-CG(U-GC AAAAG)CGGC UAU----UAA AGCGCUAGAC GAGAAG-ACC 7381 CUAUCG-|-A GCUUC--AGG GA|-ua-ag- aga------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-c-uc -cuu-uU-CC UUUUGGUUG( 8161 GGG)CA-AC- C|ACGGAG(- --------AA Uaucc-acc- )CUCC-GA|G |c|caa--|< 8221 acuaauuuua ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- --aa-ugac( --aucac--- )gucauaagc auaacccuua ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 g|--guu-ca UGAUC-CGGA ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------c cu)--|---U 9001 CCGAACAAC- |GAA-CAAAG UUACCG|UAG G|GAUAACAG |C-GUA-A-U CCCUCCUAAG 9061 AG(C--CCGC )AUUGCCGGA --GGGGUUUG CG-ACCUCGA UGUU|GG--A U|C|GGGGA| 9121 AU-CC-UGAU GG-UG(--CA -GC)CGCUAU CAAG-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AACCCC- --ACGUGAUC UGAGUUCAGA CC|GG-C(GA GA)GCCAGGU CGGCUUCUAU 9241 CU|Acgca-- --|-|<---- ---------- ---------- ---------- -----auuu- 9301 >--------- ---------- --G-CUA-CC CU--(AAGU- AC(-GAAA)G GACA-)AGGG 9361 U--AG-<--- ---------- ---------- -------->c cgagcca-au ag-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---gcccc-> 9541 ---------- ---------- cuac-gcucg acccca---- ---------- ---------- 9601 ---------- ----accugu (gaauuc--a acuaa)cc~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (8)-PROTOS 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (9)-ANNELI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.L.terre 10775 bp RNA RNA 11-JAN-191 DEFINITION Lumbricus terrestris. ACCESSION No information KEYWORDS No information. SOURCE Lumbricus terrestris. ORGANISM Lumbricus terrestris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U24570 LOCUS LTU24570 14998 bp DNA circular INV 09-SEP-1995 DEFINITION Lumbricus terrestris mitochondrion, complete genome. ACCESSION U24570 KEYWORDS . SOURCE common earthworm. ORGANISM Mitochondrion Lumbricus terrestris Eukaryotae; mitochondrial eukaryotes; Metazoa; Annelida; Oligochaeta; Haplotaxida; Lumbricina; Lumbricidae; Lumbricus. REFERENCE 1 (bases 1 to 14998) AUTHORS Boore,J.L. and Brown,W.M. TITLE Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris JOURNAL Genetics 141, 305-319 (1995) REFERENCE 2 (bases 1 to 14998) AUTHORS Boore,J.L. and Brown,W.M. TITLE Direct Submission JOURNAL Submitted (10-APR-1995) Jeffrey L. Boore, Cell Biology and Neuroanatomy, University of Minnesota, 321 Church St. SE, 4-135 Jackson Hall, Minneapolis, MN 55455, USA COMMENT NCBI gi: 984290 FEATURES Location/Qualifiers source 1..14998 /organism="Lumbricus terrestris" /mitochondrion CDS 1..>1540 /gene="COI" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984291" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit I" /translation="MRWFYSTNHKDIGTLYFILGVWAGMVGAGMSLLIRIELSQPGAF LGSDQLYNTIVTAHXFVMIFFLVMPVFIGGFGNWLLPLMLGAPDMAFPRLNNMSFWLL PPSLILLVSSAAVEKGAGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGASSILGAIN FITTVINMRWSGLRLERIPLFVWAVLITVVLLLLSLPVLAGAITMLLTDRNLNTSFFD PAGGGDPILYQHLFWFFGHPEVYILILPGFGAISHIVSHYTAKLEPFGALGMIYAMLG IAVLGFIVWAHHMFTVGLDVDTRAYFTAVTMIIAVPTGIKVFSWLATIHGSKIKYETP VLWALGFIFLFTTGGLTGIILSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIFAAFTH WFPLLTGLTLHHRWANAQFFLMFLGVNTTFFPQHFLGLSGMPRRYSDYPDAFMKWNVV SSFGSLLSFVALMLFIFILWEAFASQRSVISSPHMSSALEWSDPILPLDFHNLSETGI ITYPK" tRNA 1541..1601 /product="tRNA-Asn" CDS 1603..>2288 /gene="COII" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984292" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit II" /translation="MPNWGQVMFQDAASSVMLQLVSFHDHALLVLTLVLTVVGYALLA LMLNKQVNRYIMEAQTVETIWTILPALILLVLALPSLRILYITDEVSQPSITVKTIGH QWYWSYEYTDFLNVEMDSYMLPTSDLLPGDYRLLEVDNRMVVPMQLEIRMLITAADVI HSWTVPALGVKVDAVPGRLNQIGFTTTQPGVFYGQCSEICGANHSFMPIAVEAINTKS FMSWVSNFKP" tRNA 2289..2349 /product="tRNA-Asp" CDS 2350..>2509 /gene="ATPase8" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984293" /codon_start=1 /transl_table=5 /product="ATP synthase subunit 8" /translation="MPHLSPMSWITSMLMFWISVSILFSTLWWSNNYLFSSKMTNCAP KSLTPWNWL" tRNA 2510..2573 /product="tRNA-Tyr" tRNA 2572..2633 /product="tRNA-Gly" CDS 2635..>3413 /gene="COIII" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984294" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit III" /translation="MIRQPFHLVEYSPWPLTSSIGAFTLAIGLASWFHNHGFLCLTLA AFLIIVSMIQWWRDVVREGTYMGHHTSLVTTGLRWGMILFITSEVMFFLAFFWAFFHS SLSPTPEIGCSWPPTGIHPLNPFSVPLLNTAVLLASGVTVTWAHHSLMSGKRIDATQA LILTVCLGAYFTFLQAGEYMAAPFSIADSVYGTTFFVATGFHGLHVLIGSSFLAICLA RTWSHHFSAGHHFGFEAAAWYWHFVDVVWICLYLCIYWWGS" tRNA 3414..3482 /product="tRNA-Gln" CDS 3483..>3951 /gene="ND6" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984295" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 6" /translation="MILTSFMLMMIATTFTLYLASTPIVLGVNILMMALLLASTFASF MSSWFAFLIFLIYIGGMLVMFAYFLALTPNQQISNFNIMPYALITLLTFSALTYTTNI KIPTFSDISQGNSILYMSSTAPFLILLALILLLTMVIVVKLTSRSSGPLRPFSP" CDS 3952..>5089 /gene="cytb" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984296" /codon_start=1 /transl_table=5 /product="cytochrome b apoenzyme" /translation="MFKPIRTTHPAIKIINSTLIDLPAPNNISIWWNYGSLLGLCLVI QVLTGLFLSMHYVPNIEMAFSSVALISRDVNYGWLLRSIHANGASMFFLFIYLHAGRG LYYGSYNLSETWNIGVILFLLTMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGKT LVEWIWGGFAVDNATLNRFFAFHFILPFAIMGATILHIMFLHESGSNNPIGLNADSDR IPFHPYYSIKDTLGYTLAISALSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFL WMYAILRSIPNKLGGVMALFAAIVILFIPPLTSVMNKRSLSFYPLNKTMFWGLVASWA ILTWIGGRPVEDPFIIIGQVFTSLYFIYFISSPTISKLWDDSIII" tRNA 5156..5217 /product="tRNA-Trp" CDS 5220..>5913 /gene="ATPase6" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984297" /codon_start=1 /transl_table=5 /product="ATP synthase subunit 6" /translation="MMPDIFSSFDPYMFNTLFPLNSLFLVTNTAIILMIQSSFWVLNA RTSAFKSPVNDTIFTQLSRTSTTHLKGLSTPLSTIFFMLVMINLMGLIPYMFSTSSHL VFTLSLGFPIWLSLMISTFAHSPKKSTAHFLPDGAPDWLNPFLVLIETTSVFVRPLTL SFRLAANMSAGHIVLSLMGIYCAAAWFSSVSSTALLILTAIGYILFEVAICLIQAYIF CLLLSLYSDDHAH" tRNA 5914..5980 /product="tRNA-Arg" misc_feature 5981..6364 /note="Large unassigned region" tRNA 6365..6426 /product="tRNA-His" CDS 6427..>8150 /gene="ND5" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984298" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 5" /translation="MLRMFNTSLVASKLMWVIFTGMLAPTLYMVHCNSTLLLEWNLFS ISSTPMMMTIILDPLGLMFSCTVVMISANILKFSTIYMKEDKFINRFTVLVLLFVLSM NMLIFFPHLIILLLGWDGLGIVSFILVIYYQNPKSLAAGMITALTNRIGDVMLLLAIA WTLNQGHWNILHMWAVDENMYQALVIIIAAMTKSAQMPFSSWLPAAMAAPTPVSALVH SSTLVTAGVFLLIRFYNFLSSVWWFTTFLLFVAVSTTLMAGLSASSECDMKKIIALST LSQLGMMMAAMGLGMAHMAFFHMVTHAMFKALLFVCAGSFIHSHMHSQDLRWMGNLTK QMPTTTSCLIMANLALCGFPFMSGFYSKDMIVEASLYYPHNSLMINLILFAVGLTAFY STRFTMCVVLSPNNCGPYMHLEESNSLTSPMLLLASMSVISGSALTWILPLKQEMMMI PLDQKLKTLMLVTLGALMSWFFLTTTNMTKTCLYIRHPIINYFSCTMWFLVPLSSQFM MKLPMYVSHNYLKLTDQSWLELLGGQGINNVSSKASNIYLASLKSTPMNYLMMSSMLL LVATLVAI" tRNA 8151..8212 /product="tRNA-Phe" tRNA 8213..8277 /product="tRNA-Glu" tRNA 8276..8337 /product="tRNA-Pro" tRNA 8338..8401 /product="tRNA-Thr" CDS 8402..8698 /gene="ND4L" /note="Method: conceptual translation supplied by author. NCBI gi: 984299" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4L" /translation="MYSSIMSLVFLLPIVAVVNLISNQSHFLMTLLSLEGITLSLVLF VPISLSIMSASNVSISVILLTFGACEASLGLSLMVLMSRSYGTDMLNSLTANKC" CDS 8692..>10048 /gene="ND4" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984300" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4" /translation="MLKLQMVLMSLLLLPLIVNLYPWIIALTLSALLLPTCFNLVNSA SYSMFTEYMSSDMMSFTLSALTIWVTVMMILASTKIMHLNMYPKMFMTNLVILLIILI NCFLSPNLIMFYIWFEASLIPTMVLIMTWGYQPERSQASMYLMIYTVAASLPMLMVLC KIFIVSKTAMMPMFMNMEFPMDYPSMALAWVLTLGGFLVKLPMFTVHLWLPKAHVEAP IAGSMILAAILLKLGGYGILRMLSLFHYMAKSTSSLLSSVALVGAVSTSLICLRQSDL KSLIAYSSVGHMGLMVAGALMSSNWGFQAALAMMIAHGLSSSALFVMANMNYELTHTR SLFLMKGLLVLAPTLTMWWFLFTASNMAAPPSINLLSEIMLITSILKMSTSAFILLGL TSFFTAAYCLYMYTSMHHGPLMLTSNPIPQFKVKDLTLMTMHLVPTILIIFKPELITS WS" tRNA 10049..10113 /product="tRNA-Cys" tRNA 10114..10176 /product="tRNA-Met" rRNA 10177..10961 /product="small ribosomal subunit RNA" tRNA 10962..11023 /product="tRNA-Val" rRNA 11025..12269 /product="large ribosomal subunit RNA" tRNA 12270..12330 /product="tRNA-Leu(CUN)" tRNA 12331..12392 /product="tRNA-Ala" tRNA 12393..12455 /product="tRNA-Ser(UCN)" tRNA 12457..12521 /product="tRNA-Leu(UUR)" CDS 12523..>13447 /gene="ND1" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984301" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 1" /translation="MNIPFFTSVLMSLVLALLAMAFYTLMERKFLGYFHLRKGPNKVG LMGLPQPFADAIKLFVKEQAKPNPSNQTPFLFAPTMGLVLALLMWVIYPHSHQSFFIQ FSVLYFLCVSSMNVYTTFLAGWSSNSKYALLGALRGVAQTISYEVSMSLILLSSLIIL STMDFTKMFSYSWILFMFIPLAVVWFITNLAETNRTPFDFAEGESELVSGFNVEYSAG LFALIFMAEYANILIMSLFTSVIFMSTCASGMASDLVLILQTITLAMLFVWVRATYPR MRYDHLMNLTWKSFLPLSLALLMMSIPIAMML" tRNA 13448..13512 /product="tRNA-Ile" tRNA 13513..13576 /product="tRNA-Lys" CDS 13577..>13928 /gene="ND3" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984302" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 3" /translation="MILTALSSAIALLVPIIILGAAWVLASRSTEDREKSSPFECGFD PKSTARIPFSTRFFLLAIIFIVFDIEIVLLMPLPTILHTSDVFTTVTTSVLFLMILLI GLIHEWKEGSLDWSS" tRNA 13929..13992 /product="tRNA-Ser(AGN)" CDS 13993..>14998 /gene="ND2" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984303" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 2" /translation="MKYIKSPTMALAMSTLIMSTLMAVSSANWMFLWGAMELNLLSFI PIMMQSNNNQETEGAVKYFLAQALGSALLLMSSTSMWMTFSMISNFMPLTLMAAIMLK LGSVPCHFWYPSVMASISWVSCLILSSWQKLAPLSILAFLLPQKNMNFMLSMAAMNAL LGGVIGMNQTQLRTIMAYSSIGHIGWMMSLAAVYKPSSCIMYFVVYCILITPLFMTMG YLNMFSTKHMSKLSSYSSTVHMALLMVLLSLGGLPPFTGFMPKLMTIMLLMQSMKIIL LILIAGSIMNLFFYLNIIISSMPLPPHLKNVDSTDIKCSLKFVIPICTLSLGLSPFIM L" BASE COUNT 4476 a 3382 c 2370 g 4766 t 4 others ORIGIN BASE COUNT 460 a 243 c 193 g 349 t 9530 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~gcc-u auguu----- ---------- 301 |uau--cuu| auaaauaaaa a|cu------ ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----aaua 841 aaa(acac)u u--------- ---------- ---------- ---------- ---------- 901 ---------- ---------- |------aa- -acug-a(-u aauu)ucaua -auaaau--- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- -------cuu uaca-aua-- ----guacu( -auag-)agg ---aag-ua- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- --guc----- ---------- ---------- ---------- ---------- 1801 ---------- ----aaca-u a-<--au--- ---------- ---------- ---------- 1861 ----->aaag ua-gug---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--guuuaua 2041 --)------- -----cac-G UACCUU(GU- GCAUC)AUGG |UUU-UACAA GCcuc--aaa 2101 uu-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- -----aauaa 2701 uau-uaCCCG AA-UUCUAAG CG-AGCUGUC CCU-UCA-UA GCU------- ---------- 2761 -(-------- ---------- ---------- ---------- -----aag-) ---------- 2821 --AGCCCA-C CACU-AGUU( GUAGCAU-C) AACU-UUGGA --AAAUGGG- GGGAUAG-GG 2881 GC(u-acau) aCC-aauc-g c-GCUAGAAA AUCUCU-GGU Uuuca--gua aa-a-u-uua 2941 (-ccaa)uaa aa-ca-ugua gcgu<-ccac ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------c -uacacugca aGACU--AC- AG-AG(-GAU 3481 AAG)CCCUGU AU-UC----- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 -----aaaa- acu-agauau --gcccuccu ucca------ -->-gUAu-a GGC(CUAAAA 3781 AC-A)-GCCA -CUAA|-(-- --)-|UAGUA C(--CUCACC )GU|-AAA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aua aacug-aa|- au-uuuuga- ---------- 4501 ---------- ---------- (-------)< caaaccuuaa auc------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -uuaaaa--u auUAUGU-AA 4681 AA|AUAAGUA uuaau-uuu- auaa------ ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 -ccuaagu-- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---uacagc- -(uaccau)g u|augu---- ----(----- ------)--- ---auuau-| 6541 |---auau-u u--acaaCUU -AUAA-AGGA ACUUGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u ucUUAUUU|C GA---CUG-U UU(AACAA)A AA-CAUU-GC 6841 UCUcAG|ua- ---------- ---------- (-accuu--- ------)--- ---------- 6901 --------aa UUa-AGAGUA ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uaa)------ ---------- ---------| 7141 ----UUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GCCCAU(-U AAUU-)GUGG GC|UA-GAAU GAA-GGAUAA A-CG-AAAUA 7261 Aa-------- ---------- ------uACU GUCUCUAUAA Gccg--c--- ---uuAAAAA 7321 -U|A|CCCUC UA-AC(C-GA AGAGU)GUUA GAU----agc GUCGAAGGAC AAGAAG-ACC 7381 CUAUAG-|-A GCUUA--auu ua|--a-aua aau------| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----a-u-uu -ac---uaaa auUCGGUUG( 8161 GGG)CG-AC- C|aggga-(- --------au uaccca-uca )-ucc-cu|A |a|a----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ------caaa ag-------- ---auaaau- -g-------- ----uaucaa 8881 a-----acac UGACC-CUU- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------cu ac)--|---- 9001 AAGAUCAUU- |AAA-ACAAG CUACCU|UAG G|GAUAACAG |G-CUA-A-U CUCACUAGAG 9061 AG(U--CCUU )AUCAAUAGU --GAGGAUUG GC-CCCUCGA UGUU|GG--C U|U|AGGGa| 9121 AU-CU-CUAU GA-CG(--CA -AA)AGUCAU AUAA-AGA|U GGUU(UGUUC )AACCA-AUA 9181 A--CACCCU- --ACAUGAGC UGAGUUCAGA CC|GC-G(UA AG)C-CAGGU UAGUUUCUAU 9241 CC|UCGAUca c-|-|<---- ---------- ---------- ---------- -------uuu 9301 >--------- ---------- -aU-CUA-UU UA--(UAGU- AC(-GAAA)G GACC-)UAAU 9361 U--AG-<--- ---------- ---------- -------->a guaa------ ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --(uau--)> 9541 ---------- ---------- ------uuac ---------- ---------- ---------- 9601 ---------a cacagggaau (aaauau--a a-acc)a-uu -cu-aaguaa aauaaaucau 9661 aaacu--a-- ug~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.rubel 10775 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Lumbricus rubellus.; large subunit ribosomal RNA. ACCESSION Y08157 KEYWORDS large subunit ribosomal RNA. SOURCE Mitochondrion Lumbricus rubellus. ORGANISM Mitochondrion Lumbricus rubellus. REFERENCE 1 (bases 1 to 1121) AUTHORS Sturzenbaum,S.R., Morgan,A.J. and Kille,P. JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1121) AUTHORS Sturzenbaum,S.R. TITLE Direct Submission JOURNAL Submitted (17-SEP-1996) S.R. Sturzenbaum, University of Wales, Cardiff, School of Mol. and Med. Biosciences, PO Box 911, Cardiff, CF1 3US, UK STANDARD No information REFERENCE 3 (bases 1 to 1121) AUTHORS Sturzenbaum,S.R. TITLE Direct Submission JOURNAL Submitted (25-JUN-1997) S.R. Sturzenbaum, University of Wales, Cardiff, School of Mol. and Med. Biosciences, PO Box 911, Cardiff, CF1 3US, UK STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y08157 BASE COUNT 419 a 213 c 176 g 313 t 9654 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(-~~ ~~)~~~~-~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~-)~~ ~~~~~~~~~~ ~~-|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~--) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~-~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~-)~~~~~~~ ~~~~~~~~~G UACCUU(GU- GCAUC)AUGG |UUU-UACAA GUauc--aaa 2101 uu-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- -----aauaa 2701 uaa-uuCCCG AA-UUCUAAG CG-AGCUGCC CUA-UCA-UA GCU------- ---------- 2761 -(-------- ---------- ---------- ---------- -----aag-) ---------- 2821 --AGCCCA-C UACU-AGUU( GUAGCAA-C) AACU-UUGGA --AAAUGGU- AGGGCAG-GG 2881 GC(u-acau) ACC-aaac-g c-GCUAGAAA AUCUCU-GGU UCUCA--gua aa-a-u-uua 2941 (-uaaa)uaa aa-ca-ugua guca<-uu-- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------c -uacacugua aAAUU--AU- AG-AG(-GAU 3481 AAG)CCCUAU AA-UU----- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 -----aaa-- acu-agacgu uucaauuuac ccca------ ------AU-A GGC(CUAAAA 3781 AC-A)-GCCA -UUAA|-(-- --)-|UAAUA C(--CUUACC )GU|-AAU-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aaa aacug-aa|- au-uuucuga ---------- 4501 ---------- ---------- (-------)< uaaacuuuaa auc------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -uaaaaa--u auUCUGU-AA 4681 AA|AUAAGUA uuaau-cua- auaa------ ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 -ccuaaau-- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---------- 6481 ---uaaaac- --uaccua-u c-aaucc--- ---------- ---------- ---auaau-- 6541 ----accuaa u----auCUU -AUAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c ccUCAUUU|C GA---CUG-U UU(AACAA)A AA-CAUU-GC 6841 CC-AAG|u-- ---------- ---------- (-aagaa--- ------)--- ---------- 6901 ---------a UUU-GGGGUA ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u agu)------ ---------- ---------| 7141 ----UUC-AA C-|GG-C|-C -GCGGU-(AU -CCUA)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GCCCAU(-U AAUU-)GUGG GC|UA-GAAU GAAAGGAUUA A-CG-AAAUA 7261 Aa-------- ---------- ------agCU GUCUCUAUAA Gacc--c--- ---cuAAAAA 7321 UU|A|CCCUU UA-AC(C-GA AGAGU)GUUA AAU----agc GUCGAAGGAC AAGAAG-ACC 7381 CUAUAG-|-A GCUUA--auu aa|--a-aua aau------| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----a-u-uu -ac---uaaa auUCGGUUG( 8161 GGG)CG-AC- C|aggga-(- --------aa uuacuaauca )-ucc-cu|A |a|g----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ------uaaa ag-------- ---auaaau- -u-------- ----aaucua 8881 a-----ccau UGACC-CUU- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uc)--|---- 9001 AAGAUCACU- |AAA-ACAAG CUACCU|UAG G|GAUAACAG |G-CUA-A-U CUUACUAGAG 9061 AG(U--UCUU )AUCAAUAGU --AGGGUUUG GC-ACCUCGA UGUU|GG--C U|U|AGGGA| 9121 AU-CU-AUGU GG-CG(--CA -AA)AGUCAC AUAA-AGA|U GGUU(UGUUC )AACCA-AUA 9181 A--CACCCU- --ACAUGAGC UGAGUUCAGA CC|GGCG(UA AG)C-CAGGU UAGUUUCUAU 9241 CC|UCGAU-c a-|-|<---- ---------- ---------- ---------- -------uau 9301 >--------- ---------- -AU-CUA-UU UA--(UAGU- AC(-GAAA)G GACC-)UAAU 9361 C--AG-<--- ---------- ---------- -------->a guaa------ ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --(uau--)> 9541 ---------- ---------- ------uuac ---------- ---------- ---------- 9601 ---------a uggcuggaau (aaauau--a a-aac)a-uu -au-aaacaa cauaaaucac 9661 acacu--a-- ug~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (9)-Arthro 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (10)-Cheli 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.hebra 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Amblyomma hebraeum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Amblyomma hebraeum. ORGANISM Mitochondria Amblyomma hebraeum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L34316 ID MIAHRGDC standard; DNA; ORG; 456 BP. XX AC L34316; XX DT 25-NOV-1994 (Rel. 41, Created) DT 29-NOV-1994 (Rel. 41, Last updated, Version 65) XX DE Mitochondrion Amblyomma hebraeum 16S ribosomal RNA (16S rRNA) gene. XX KW 16S ribosomal RNA. XX OS Amblyomma hebraeum OC Eukaryota; Animalia; Metazoa; Arthropoda; Chelicerata; Arachnida; OC Acarina; Parasitiformes; Ixodida; Ixodoidea; Ixodidae. XX OG Mitochondrion XX RN [1] RP 1-456 RA Black W.C.IV., Piesman J.; RT "Phylogeny of hard and soft-tick taxa (Acari:Ixodida) based on RT mitochondrial 16S rDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 91:10034-10038(1994). XX CC NCBI gi: 508632 XX FH Key Location/Qualifiers FH FT source 1..456 FT /organism="Amblyomma hebraeum" FT /mitochondrion FT /dev_stage="adult" FT /sequenced_mol="DNA" FT /tissue_type="whole organism" FT rRNA 1..456 FT /gene="16S rRNA" FT /product="16S ribosomal RNA" XX SQ Sequence 456 BP; 175 A; 44 C; 73 G; 164 T; 0 other; BASE COUNT 175 a 44 c 73 g 164 t 10319 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~(~~~~~ ~~~~~~)~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)------ ---------- ---------| 7141 ----UUA-AA U-|UG-c|-U -GUGGU-(AU UUUGG)ACUA UA|C(AAA)- GG-Uauug-- 7201 --a-aa-U-A |AGACUU(-U AAUU-)GAGU GC|U--AAAA GAAUGGAUUA A-CA-GAAAA 7261 AU-------- ---------- -------UCU UUUUUAAUUU UAaa-aa--- -u--UAAAAU 7321 UA|U|UUUUG UU-AG(U-GA AGAAA)CUAC AAU----AAG AAUUAAGGAC AAGAAG-ACC 7381 CUAAGA-|-A UUUUG--AAU AA|--u-uuu auu--au--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- -aaaa-u--- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --aua-g-ua agaa--u-UA UUUUAAUUG( 8161 GGG)CG-AU- U|aacaaa(- --------aa uaa-aaaac- )uuug-uu|u |u|uc---|< 8221 uuua------ ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------a 8881 a|------aa AGAAC-cau- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uau u-)--|---- 9001 auuggucuu- |aug-gaAAA AUACUC|UAG G|GAUAACAG |C-GUA-A-U AAUUUUUAAU 9061 AG(U--UCAU )AUAGACAAA --AUAGUUUG CG-ACCUCGA UGUU|GG--A U|U|AGGAU| 9121 UC-UU-AGCU AA-UG(--AA -GA)AGUUAG UUA--AAG|A AGUU(UGUUC )AACUU-UUA 9181 A--AUUCCU- --ACUUGAUC UGAGUUCAGA CC|GG~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (10)-Crust 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.franc 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Artemia franciscana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Artemia franciscana. ORGANISM Mitochondria Artemia franciscana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X69067 LOCUS MTAFDNA 15770 bp DNA Circular INV 03-AUG-1993 DEFINITION A.franciscana complete mitochondrial DNA ACCESSION X69067 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATPase subunit 6; ATPase subunit 8; CoQH2-Cyt C reductase subunit b; cytochrome oxidase subunit I; cytochrome oxidase subunit II; cytochrome oxidase subunit III; mitochondrial DNA; mitochondrial genome; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-fMet; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu-cun; transfer RNA-Leu-uur; transfer RNA-Lys; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser-agy; transfer RNA-Ser-ucn; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Artemia franciscana ORGANISM Artemia franciscana Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiopoda; Sarsostraca; Anostraca; Artimiidae. REFERENCE 1 (bases 1 to 15770) AUTHORS Valverde,J.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) J.R. Valverde, University Autonoma of Madrid, Dept of Biochemistry, School of Medicine, c/ Arzobispo Morcillo 4, Madrid 28029, SPAIN STANDARD full automatic REFERENCE 2 (bases 1 to 15770) AUTHORS Valverde,J.R., Batuecas,B., Moratilla,C., Garesse,R. and Marco,R. TITLE Sequence and organization of Artemia mitochondrial DNA JOURNAL Unpublished STANDARD full automatic FEATURES Location/Qualifiers source <1..>15770 /organism="Artemia franciscana" /dev_stage="cyst" /clone="pMA-1 & pMA-3" /map="0-100" tRNA 1..63 /product="transfer RNA-fMet" CDS 64..954 /gene="ND-2" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /transl_table=5 /note="subunit 2" tRNA 953..1015 /product="transfer RNA-Trp" tRNA complement(1033..1095) /product="transfer RNA-Ile" tRNA complement(1104..1169) /product="transfer RNA-Gln" tRNA complement(1208..1268) /product="transfer RNA-Cys" tRNA complement(1281..1342) /product="transfer RNA-Tyr" CDS 1344..2882 /transl_table=5 /gene="CO-I" /EC_number="1.9.3.1" /product="cytochrome-c oxidase" /note="subunit I" tRNA 2878..2940 /product="transfer RNA-Leu(UUR)" CDS 2941..3627 /transl_table=5 /gene="CO-II" /EC_number="1.9.3.1" /product="cytochrome-c oxidase" /transl_except=(pos:2941..2943,aa:Met) /note="subunit II" tRNA 3623..3686 /product="transfer RNA-Lys" tRNA 3690..3751 /product="transfer RNA-Asp" CDS 3752..3913 /transl_table=5 /gene="ATP8" /EC_number="3.6.1.34" /product="H(+)-transporting ATP synthase" /note="subunit 8" CDS 3907..4566 /transl_table=5 /gene="ATP6" /EC_number="3.6.1.34" /product="H(+)-transporting ATP synthase" /note="subunit 6" CDS 4566..5339 /transl_table=5 /gene="CO-III" /EC_number="1.9.3.1" /product="cytochrome-c oxidase" /note="subunit III" tRNA 5341..5401 /product="transfer RNA-Gly" CDS 5402..5737 /gene="ND-3" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /transl_table=5 /note="subunit 3" tRNA 5767..5828 /product="transfer RNA-Ala" tRNA 5829..5892 /product="transfer RNA-Arg" tRNA 5893..5955 /product="transfer RNA-Asn" tRNA 5956..6020 /product="transfer RNA-Ser(AGY)" tRNA 6022..6087 /product="transfer RNA-Gln" tRNA 6085..6146 /product="transfer RNA-Phe" CDS complement(6147..7761) /transl_table=5 /gene="ND-5" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /note="subunit 5" tRNA complement(7769..7830) /product="transfer RNA-His" CDS complement(7821..8981) /transl_table=5 /gene="ND-4L" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /note="subunit 4L" tRNA 9277..9338 /product="transfer RNA-Thr" tRNA complement(9339..9399) /product="transfer RNA-Pro" CDS 9402..9869 /gene="ND-6" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /transl_table=5 /transl_except=(pos:9402..9404,aa:Met) /note="subunit 6" CDS 9880..11025 /transl_table=5 /gene="Cyt-b" /EC_number="1.10.2.2" /product="ubiquinol--cytochrome c reductase" tRNA 11029..11095 /product="transfer RNA-Ser(UCN)" CDS complement(11102..11998) /transl_table=5 /gene="ND-1" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /note="subunit 1" tRNA complement(12011..12072) /product="transfer RNA-Leu(CUN)" rRNA complement(12073..13225) /product="16S ribosomal RNA" tRNA complement(13226..13288) /product="transfer RNA-Val" rRNA complement(13289..14000) /product="12S ribosomal RNA" 3'UTR 14001..>15770 BASE COUNT 4888 a 2809 c 2785 g 5288 t ORIGIN BASE COUNT 386 a 196 c 219 g 352 t 9622 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~aucuuuauu uacaaauu>- ---------- |-----uauu 841 uaa(aaca)a uau------- ---------- ---------- ---------- ---------- 901 ---------- ---------- |uac-auUA- -GUAA-A(-a g-aa)UCGAA -Uuuau---- 961 -------<-- ---------- --ucaagguc u--------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- -----aa--- ----GUACU( -GAAA-)AGG ---AAA---- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- -------guc cacuaauua- ---------- 1861 ----->caaa gaaguu---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----auug 2041 --)------- -----uuu-G UACCUU(UU- GUAUC)AGGG |UUU-AUUaa auu----uu- 2101 aau------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------cu ucauu>---- --(------) ---------- ---------- --------gc 2701 uga-auCCCG AA-ACAAG-G UG-AUCUAUA UUG-GUU-A- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------A AG-AUGAUU( GUUUCAU-A) AAUC-UCUU- --CAAGACU- AAUAUCG-UU 2881 GC(G-AAA-) AUA-UUUC-G U-ACUUUU-- AUAUCU-GGU UGGCA--GAA UA--CU-CCU 2941 (-UUA-)GGG ---UAc---- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ----ucc(gc aa)gga---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ------aga- -UUUU--CU- AG-GG(-GAC 3481 GAG)CUCUAG AA-AA----a auua------ ---------- --uau-u--a -uaauuauca 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- --agaaaaac au>gac-U-A GGC(UUAAAA 3781 GU-U)-GCCU -Cggu|u(u- aa)-|uaacc a(--uuguua )gu|-aaa-- ------<-a- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -----ugaua auuu--caa| a--a-ua--- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- -----auuaa -u-----uaa gACUGGCC|- GA-UGCUAAu u--------- 4501 ---------- ---------- (acaua--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-----aa| uuUAGCAAUC ACAAUGA-UA 4681 GA|AUUAGUA -GAa------ ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---cua 5701 uaaaugcacu uaacacaaug uuc------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---cuca-c ----AAAAUC -CCAA-AG-A AUUCGGCAAA A--------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ------(--- )--------- cUCAUUUC|C GC---CUG-U UU(AACAA)A GA-CAUC-GC 6841 -UCUUa|--- ---------- ---------- (--a-uu--- ------)--- ---------- 6901 ---------- uGG-GAGGUC GAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G A--------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ug aa-)------ ---------- ---------| 7141 ----UUA-AA G-|GG-C|-C -GUGGU-(AU -ACUG)ACCA UG|C(GAA)- GGuuAGCAUA 7201 AUC-AU-U-A |GCCUUU(-U GAUU-)UGAG GC|UG-GAAU GAAUGGUUUG A-CGAGAGAU 7261 GG-------- ---------- -------UCU GUCUCUUCGA UUAA-A---- ----UUGAAG 7321 UU|A|AUCUU UA-AG(U-GA AAAAG)CUUA AAU----GUA CUUGGAGGGC GAUAAG-ACC 7381 CUAUAG-|-A UCUUU--ACA UU|--u-aau ucu--uu--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-ugucu- ---------- -ugcg-guag 7561 gu-aauu--- ---------- ----agacag ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --agu-a-a- --agc-A-AU GUUCGGUUG( 8161 GGG)CG-AC- G|GUAAGA(- --------AC AGAAUAAAC- )ACUU-AC|A |A|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------c auaaac--a( -caucaa--- )u---aa-au g--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -|------ac cauug-auc- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------cuua --)--|---- 9001 gaugaacaa- |AGA-CCAAG UUACCU|UAG G|GAUAACAG |C-GUA-Auu cuuuuuUGAG 9061 AG(U--UCAA )AUCGACAAA --AGAGUUUG CG-ACCUCGA UGUU|GG--U U|C|AGGGA| 9121 CC-CU-ACUC GG-UG(--CA -GC)AGCCUA G-AG-AGG|C AGUC(UGUUC )GACUG-UUA 9181 A--ACCCCU- --ACGUGAUC UGAGUUCAGA CC|GG-C(GU AA)GCCAGGU UAGUUUCUAC 9241 CC|CCAAG-- --|-|<---- ---------- ---------- ---------- -gcaaaucca 9301 >--------- ---------- ----CUC-AU GA--(UAGU- AC(-GAAA)G GACC-)UCUU 9361 G--AG-<--- ---------- ---------- -------->- ---------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ---------- ---------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )---auuuua u~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Arte.sp 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Artemia sp.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Artemia sp. ORGANISM Mitochondria Artemia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X12965,M21833 LOCUS SHRMTRGDA 1129 bp ss-RNA ORG 15-JUN-1989 DEFINITION Brine shrimp mitochondrial 16S ribosomal RNA gene, 3' end. ACCESSION M21833 KEYWORDS 16S ribosomal RNA; ribosomal RNA. SOURCE Brine shrimp (20-h-old) nauplii or adult, cDNA to ribosomal RNA, clone pArLSU-1. ORGANISM Mitochondrion Artemia sp. Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiopoda; Sarsostraca; Anostraca; Artimiidae. REFERENCE 1 (bases 518 to 1129) AUTHORS Palmero,I., Renart,J. and Sastre,L. TITLE Isolation of cDNA clones coding for mitochondrial 16S ribosomal RNA from the crustacean Artemia JOURNAL Gene 68, 239-248 (1988) STANDARD full staff_review REFERENCE 2 (bases 1 to 517) AUTHORS Sastre,L. JOURNAL Unpublished (1989), U. Autonoma, Arzobispo Morcillo.4 Spain 28029. STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly provided by L.Sastre, 01-MAR-1989. FEATURES from to/span description rRNA < 1 1129 16S ribosomal RNA refnumbr 518 518 numbered 1 in [1] refnumbr 1 1 numbered 1 in [2] BASE COUNT 380 a 194 c 216 g 339 t ORIGIN 68 bp upstream of AccI site. BASE COUNT 380 a 194 c 216 g 339 t 9646 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~auu 841 UAA(AACA)a uau------- ---------- ---------- ---------- ---------- 901 ---------- ---------- |uau-auUA- -GUAA-A(-a g-aa)UCGAA -Uuuau---- 961 -------<-- ---------- --ucaagguc u--------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- -----aa--- ----GUACU( -GAAA-)AGG ---AAA---- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- -------guc uacuaauua- ---------- 1861 ----->caaa gaaguu---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----auug 2041 --)------- -----uuu-G UACCUU(UU- GUAUC)AGGG |UUU-AUUaa auu----uc- 2101 aau------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------cu uuauu>---- --(------) ---------- ---------- --------gc 2701 uga-auCCCG AA-ACAAG-G UG-AUCUAUA UUG-GUU-A- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------A AG-AUGAUU( GUUUCAU-A) AAUC-UCUU- --CAAGACC- -AUAUCG-UU 2881 GC(G-AAA-) AUA-UUUC-G U-ACCUUU-- AUAUCU-GGU UGGCA--GAA UA--CU-CCU 2941 (-UUA-)GGG ---UAc---- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ----ucc(gc aa)gga---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ------aga- -UUUU--CU- AG-GG(-GAC 3481 GAG)CUCUAG AA-AA----a auua------ ---------- --uau-u--a -uaauuauca 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- --agaaaaac au>gac-U-A GGC(UUAAAA 3781 GU-U)-GCCU -Cggu|u(u- aa)-|uaacc a(--uuguua )gu|-aaa-- ------<-a- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -----ugaua auuu--caa| a--a-ua--- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- -----auuaa -u-----uaa gACUGGCC|- GA-UGCUAAu u--------- 4501 ---------- ---------- (acaua--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-----aa| uuUAGCAAUC ACAAUGA-UA 4681 GA|AUUAGUA -GAa------ ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---cua 5701 uaaaugcacu uaacacaaua uuc------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---cuca-c ----AAAAUC -CCAA-AGGA AUUCGGCAAA A--------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ------(--- )--------- cUCAUCUC|C GC---CUG-U UU(AACAA)A GA-CAUC-GC 6841 -UCUUa|--- ---------- ---------- (--a-uu--- ------)--- ---------- 6901 ---------- uGG-GAGGUC GAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------u- aa-)------ ---------- ---------| 7141 ----UUA-AA G-|GG-C|-C -GUGGU-(AU -ACUG)ACCA UG|C(GAA)- GG-UAGCAUA 7201 AUC-AU-U-A |GCCUUU(-U GAUU-)UGAG GC|UG-GAAU GAAUGGUUUG A-CGAGAGAU 7261 GG-------- ---------- -------UCU GUCUCUUCGA UUAA-A---- ----UUGAAG 7321 UU|A|AUCUU UA-AG(U-GA A-AAG)CUUA AAU----GUA CUUGGAGGGC GAUAAG-ACC 7381 CUAUAG-|-A UCUUU--ACA UU|--u-aau ucu--uu--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-ug-cu- ---------- -ugcg-guag 7561 gu-aauu--- ---------- ----agacag ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --agu-a-a- --aac-A-AU GUUCGGUUG( 8161 GGG)CG-AC- G|GUAAGA(- --------AC AGAAUAAAC- )ACUU-AC|A |A|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------c auaaac--a( -caucaa--- )u---aa-au g--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -|------ac cauug-auc- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------cuua --)--|---- 9001 gaugaauaa- |AGA-CCAAG U-ACCU|UAG G|GAUAACAG |C-GUA-A-U UCUUUUUGAG 9061 AG(U--UCAA )AUCGACAAA --AGAGUUUG CGAGCCUCGA UGUU|GGU-U U|C|AGGGA| 9121 CC-CU-ACUC GG-UG(--CA -GC)---CUA G-AG-AGG|C AGUC(UGUUC )GACUG-UUA 9181 A--ACCCCU- --ACGUGAUC UGAGUUCAGA CC|GA-C(GU AA)GCCAGGU UAGUUUCUAC 9241 CC|CCAAG-- --|-|<---- ---------- ---------- ---------- -gcaaaucca 9301 >--------- ---------- ----CUC-AU GA--(UAGUC AC(-GAAA)G GACC-)UCUU 9361 G--AG-<--- ---------- ---------- -------->- ---------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ---------- ---------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )---auuuua u~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.salin 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Artemia sp.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Artemia sp. ORGANISM Mitochondria Artemia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X12965,M21833 LOCUS X12965 1137 bp UNA 15-JUN-1989 DEFINITION Artemia mitochondrial 16S ribosomal RNA. ACCESSION X12965 REFERENCE 1 (bases ??) AUTHORS Sastre,L. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases 1 to 1137; enum. 1 to 1137) AUTHORS Sastre,L. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry BASE COUNT 382 a 197 c 218 g 340 t ORIGIN BASE COUNT 382 a 197 c 218 g 340 t 9638 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~auu 841 UAA(AACA)a uau------- ---------- ---------- ---------- ---------- 901 ---------- ---------- |uau-auUA- -GUAA-A(-a g-aa)UCGAA -Uuuau---- 961 -------<-- ---------- --ucaagguc u--------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- -----aa--- ----GUACU( -GAAA-)AGG ---AAA---- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- -------guc uacuaauua- ---------- 1861 ----->caaa gaaguu---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----auug 2041 --)------- -----uuu-G UACCUU(UU- GUAUC)AGGG |UUU-AUUaa auu----uc- 2101 aau------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------cu uuauu>---- --(------) ---------- ---------- --------gc 2701 uga-auCCCG AA-ACAAG-G UG-AUCUAUA UUG-GUU-A- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------A AG-AUGAUU( GUUUCAU-A) AAUC-UCUU- --CAAGACC- -AUAUCG-UU 2881 GC(G-AAA-) AUA-UUUC-G U-ACCUUU-- AUAUCU-GGU UGGCA--GAA UA--CU-CCU 2941 (-UUA-)GGG ---UAc---- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ----ucc(gc aa)gga---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ------aga- -UUUU--CU- AG-GG(-GAC 3481 GAG)CUCUAG AA-AA----a auua------ ---------- --uau-u--a -uaauuauca 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- --agaaaaac au>gac-U-A GGC(UUAAAA 3781 GU-U)-GCCU -Cggu|u(u- aa)-|uaacc a(--uuguua )gu|-aaa-- ------<-a- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -----ugaua auuu--caa| a--a-ua--- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- -----auuaa -u-----uaa gACUGGCC|- GA-UGCUAAu u--------- 4501 ---------- ---------- (acaua--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-----aa| uuUAGCAAUC ACAAUGA-UA 4681 GA|AUUAGUA -GAa------ ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---cua 5701 uaaaugcacu uaacacaaua uuc------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---cuca-c ----AAAAUC -CCAA-AGGA AUUCGGCAAA A--------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ------(--- )--------- cUCAUCUC|C GC---CUG-U UU(AACAA)A GA-CAUC-GC 6841 CUCUUa|--- ---------- ---------- (--acuu--- ------)--- ---------- 6901 ---------- uGG-GAGGUC GAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ug aa-)------ ---------- ---------| 7141 ----UUA-AA G-|GG-C|-C -GUGGU-(AU -ACUG)ACCA UG|C(GAA)- GG-UAGCAUA 7201 AUC-AU-U-A |GCCUUU(-U GAUU-)UGAG GC|UG-GAAU GAAUGGUUUG A-CGAGAGAU 7261 GG-------- ---------- -------UCU GUCUCUUCGA UUAA-A---- ----UUGAAG 7321 UU|A|AUCUU UA-AG(U-GA AAAAG)CUUA AAU----GUA CUUGGAGGGC GAUAAG-ACC 7381 CUAUAG-|-A UCUUU--ACA UU|--u-aau ucu--uu--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-ugucu- ---------- -ugcg-guag 7561 gu-aauu--- ---------- ----agacag ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --agu-a-a- --aac-A-AU GUUCGGUUG( 8161 GGG)CG-AC- G|GUAAGA(- --------AC AGAAUAAAC- )ACUU-AC|A |A|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------c auaaac--a( -caucaa--- )u---aa-au g--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -|------ac cauug-auc- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------cuua --)--|---- 9001 gaugaauaa- |AGA-CCAAG UUACCU|UAG G|GAUAACAG |C-GUA-A-U UCUUUUUGAG 9061 AG(U--UCAA )AUCGACAAA --AGAGUUUG CGAGCCUCGA UGUU|GG--U U|C|AGGGA| 9121 CC-CU-ACUC GG-UG(--CA -GC)AGCCUA G-AG-AGG|C AGUC(UGUUC )GACUG-UUA 9181 A--ACCCCU- --ACGUGAUC UGAGUUCAGA CC|GA-C(GU AA)GCCAGGU UAGUUUCUAC 9241 CC|CCAAG-- --|-|<---- ---------- ---------- ---------- -gcaaaucca 9301 >--------- ---------- ----CUC-AU GA--(UAGUC AC(-GAAA)G GACC-)UCUU 9361 G--AG-<--- ---------- ---------- -------->- ---------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ---------- ---------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )---auuuua u~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (10)-Trach 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (11)-Hexap 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (12)-Insec 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.D.melan 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Drosophila melanogaster. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Drosophila melanogaster. ORGANISM Mitochondria Drosophila melanogaster. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U37541 LOCUS DMU37541 19517 bp DNA INV 26-JAN-1996 DEFINITION Drosophila melanogaster mitochondrial genome, complete sequence. ACCESSION U37541 NID g1166529 KEYWORDS A+T-rich region; ATPase; circular; complete genome; cytochrome b; cytochrome c; cytochrome c oxidase; mitochondrial DNA; NADH dehydrogenase; ribosomal RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Drosophila melanogaster. ORGANISM Mitochondrion Drosophila melanogaster Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 408; 13319 to 19517) AUTHORS Lewis,D.L., Farr,C.L. and Kaguni,L.S. TITLE Drosophila melanogaster mitochondrial DNA: Completion of the nucleotide sequence and evolutionary comparsions JOURNAL Insect Mol. Biol. 4 (4), 263-278 (1995) REFERENCE 2 (bases 404 to 5272) AUTHORS de Bruijn,M.H. TITLE Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code JOURNAL Nature 304 (5923), 234-241 (1983) MEDLINE 83245048 REFERENCE 3 (bases 5269 to 5695) AUTHORS Clary,D.O., Wahleithner,J.A. and Wolstenholme,D.R. TITLE Transfer RNA genes in Drosophila mitochondrial DNA: related 5' flanking sequences and comparisons to mammalian mitochondrial tRNA genes JOURNAL Nucleic Acids Res. 11 (8), 2411-2425 (1983) MEDLINE 83220794 REFERENCE 4 (bases 12511 to 12682) AUTHORS Clary,D.O., Goddard,J.M., Martin,S.C., Fauron,C.M. and Wolstenholme,D.R. TITLE Drosophila mitochondrial DNA: a novel gene order JOURNAL Nucleic Acids Res. 10 (21), 6619-6637 (1982) MEDLINE 83090428 REFERENCE 5 (bases 804 to 1778) AUTHORS Satta,Y., Ishiwa,H. and Chigusa,S.I. TITLE Analysis of nucleotide substitutions of mitochondrial DNAs in Drosophila melanogaster and its sibling species JOURNAL Mol. Biol. Evol. 4 (6), 638-650 (1987) MEDLINE 88174373 REFERENCE 6 (bases 441 to 2967) AUTHORS Satta,Y. and Takahata,N. TITLE Evolution of Drosophila mitochondrial DNA and the history of the melanogaster subgroup JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87 (24), 9558-9562 (1990) MEDLINE 91088557 REFERENCE 7 (bases 5268 to 13619) AUTHORS Garesse,R. TITLE Drosophila melanogaster mitochondrial DNA: gene organization and evolutionary considerations JOURNAL Genetics 118 (4), 649-663 (1988) MEDLINE 88212147 REFERENCE 8 (bases 14215 to 14512) AUTHORS Ballard,J.W., Olsen,G.J., Faith,D.P., Odgers,W.A., Rowell,D.M. and Atkinson,P.W. TITLE Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods JOURNAL Science 258 (5086), 1345-1348 (1992) MEDLINE 93088057 REFERENCE 9 (bases 14917 to 19517) AUTHORS Lewis,D.L., Farr,C.L., Farquhar,A.L. and Kaguni,L.S. TITLE Sequence, organization, and evolution of the A+T region of Drosophila melanogaster mitochondrial DNA JOURNAL Mol. Biol. Evol. 11 (3), 523-538 (1994) MEDLINE 94285822 REFERENCE 10 (bases 1 to 19517) AUTHORS Lewis,D.L., Farr,C.L. and Kaguni,L.S. TITLE Direct Submission JOURNAL Submitted (03-OCT-1995) Laurie S. Kaguni, Biochemistry Department, Michigan State University, East Lansing, MI 48824-1319, USA COMMENT NCBI gi: 1166529 FEATURES Location/Qualifiers source 1..19517 /organism="Drosophila melanogaster" /mitochondrion /note="derived from new and previously submitted sequences; sequence is a composite containing sequences obtained from different Drosophila melanogaster strains" tRNA 1..65 /product="tRNA-Ile (GAU)" tRNA complement(97..165) /product="tRNA-Gln (UUG)" tRNA 171..239 /product="tRNA-f-met (CAU)" CDS 240..1265 /note="NCBI gi: 1166530" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 2" /db_xref="PID:g1166530" /translation="MFNNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPL LSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKNNMNNEINESFTSMIIMSALL LKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKYLLLISVILSVII GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLILFFFYSFLSFVLTFMFNIF KLFHLNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLT IMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMYMIMTFFSIFGLFLI SLFYFMF" tRNA 1264..1329 /product="tRNA-Trp (UCA)" tRNA complement(1322..1383) /product="tRNA-Cys (GCA)" tRNA complement(1403..1468) /product="tRNA-Tyr (GUA)" misc_feature 1470..1473 /note="ATAA, putative translation initiation codon for cytochrome c oxidase subunit I" CDS <1474..3009 /note="NCBI gi: 1166531" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit I" /db_xref="PID:g1166531" /translation="SRQWLFSTNHKDIGTLYFIFGAWAGMVGTSLSILIRAELGHPGA LIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWL LPPALSLLLVSSMVENGAGTGWTVYPPLSAGIAHGGASVDLAIFSLHLAGISSILGAV NFITTVINMRSTGISLDRMPLFVWSVVITALLLLLSLPVLAGAITMLLTDRNLNTSFF DPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIISQESGKKETFGSLGMIYAML AIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQLSYSP AILWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAVFAIMAGFI HWYPLFTGLTLNNKWLKSHFIIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTWNI VSTIGSTISLLGILFFFFIIWESLVSQRQVIYPIQLNSSIEWYQNTPPAEHSYSELPL LTN" tRNA 3012..3077 /product="tRNA-Leu (UAA)" CDS 3083..>3767 /note="incomplete stop codon, requires polyadenylation; NCBI gi: 1166532" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit II" /db_xref="PID:g1166532" /translation="MSTWANLGLQDSASPLMEQLIFFHDHALLILVMITVLVGYLMFM LFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDEINEPSVTLKSIGH QWYWSYEYSDFNNIEFDSYMIPTNELMTDGFRLLDVDNRVVLPMNSQIRILVTAADVI HSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFMPIVIESVPVNY FIKWISSNNS" tRNA 3768..3838 /product="tRNA-Lys (CUU)" tRNA 3840..3906 /product="tRNA-Asp (GUC)" CDS 3907..4068 /note="NCBI gi: 1166533" /codon_start=1 /transl_table=5 /product="ATPase 8" /db_xref="PID:g1166533" /translation="MPQMAPISWLLLFIIFSITFILFCSINYYSYMPNSPKSNELKNI NLNSMNWKW" CDS 4062..4736 /note="NCBI gi: 1166534" /codon_start=1 /transl_table=5 /product="ATPase 6" /db_xref="PID:g1166534" /translation="MMTNLFSVFDPLAIFNFSLNWLSTFLGLLMIPSIYWLMPSRYNI MWNSILLTLHKEFKTLLGPSGHNGSTFIFISLFSLILFNNFMGLFPYIFTSTSHLTLT LSLALPLWLCFMLYGWINHTQHMFAHLVPQGTPAILMPFMVCIETISNIIRPGTLAVR LTANMIAGHLLLTLLGNTGSSMSYMLMTFLLMAQIALLVLESAVAMIQSYVFAVLSTL YSSEVN" CDS 4736..5524 /note="NCBI gi: 1166535" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit III" /db_xref="PID:g1166535" /translation="MSTHSNHPFHLVDYSPWPLTGAIGAMTTVSGMVKWFHQYDISLF VLGNIITILTVYQWWRDVSREGTYQGLHTYAVTIGLRWGMILFILSEVLFFVSFFWAF FHSSLSPAIELGASWPPMGIISFNPFQIPLLNTAILLASGVTVTWAHHSLMENNHSQT TQGLFFTVLLGIYFTILQAYEYIEAPFTIADSIYGSTFFMATGFHGIHVLIGTTFLLV CLLRHLNNHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWGG" tRNA 5543..5607 /product="tRNA-Gly (UCC)" CDS 5608..5961 /note="NCBI gi: 1166536" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 3" /db_xref="PID:g1166536" /translation="MFSIIFIALLILLITTIVMFLASILSKKALIDREKSSPFECGFD PKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIIMKYSNIMIWTITSIIFILILLI GLYHEWNQGMLNWSN" tRNA 5981..6045 /product="tRNA-Ala (UGC)" tRNA 6055..6118 /product="tRNA-Arg (UCG)" tRNA 6119..6183 /product="tRNA-Asn (GUU)" tRNA 6184..6251 /product="tRNA-Ser (GCU)" tRNA 6252..6318 /product="tRNA-Glu (UUC)" tRNA complement(6337..6401) /product="tRNA-Phe (GUU)" CDS complement(<6401..8124) /note="incomplete stop codon, requires polyadenylation; NCBI gi: 1166537" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 5" /db_xref="PID:g1166537" /translation="MCSISFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSI VMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIIS PNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYG SWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS TLVTAGVYLLIRFNIILSTSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQ LGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIGIH MPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYS FRLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICL PIYMKLLTLFVCIVGGLFGYLISLSNLFFLNKSLFMYNLSTFLGSMWFMPYISTYGMI FYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFVFWIL ILLILLFL" tRNA complement(8140..8205) /product="tRNA-His (GUG)" CDS complement(<8205..9544) /note="incomplete stop codon, requires polyadenylation; NCBI gi: 1166538" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4" /db_xref="PID:g1166538" /translation="MLKIIFFLLFLIPFCFINNMYWMVQIMMFFISFIFLLMNNFMNY WSEISYFLGCDMLSYGLILLSLWICSLMLLASEMINKHNNYKNLFLLNIIILLLLLIL TFSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGLYLLFYTLLVSLPMLIGIFY VMNKIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVYLWLPKAHVEAPVSGSMI LAGIMLKLGGYGMLRVISFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAY SSVAHMGIVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLFCLANVSYERLGSRSMLINK GLLNFMPSMTLWWFLLSSANMAAPPTLNLLGEISLLNSIVSWSWISMILLSFLSFFSA AYTLYLYSFSQHGKLFSGVYSFSSGKIREYLLMLLHWLPLNLLILKSESFMLWL" CDS complement(9544..9834) /note="NCBI gi: 1166539" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4L" /db_xref="PID:g1166539" /translation="MIMILYWSLPMILFILGLFCFVSNRKHLLSMLLSLEFIVLMLFF MLFIYLNMLNYESYFSMMFLTFSVCEGALGLSILVSMIRTHGNDYFQSFSIM" tRNA 9837..9902 /product="tRNA-Thr (UGU)" tRNA complement(9903..9963) /product="tRNA-Pro (UGG)" CDS 9970..10494 /note="NCBI gi: 1166540" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 6" /db_xref="PID:g1166540" /translation="MIQLMLYSLIITTSIIFLNMIHPLALGLTLLIQTIFVCLLTGLM TKSFWYSYILFLIFLGGMLVLFIYVTSLASNEMFNLSMKLTLFSSLILIFMLILSFIM DKTSSSLFLMNNDMQSIINMNSYFMENSLSLNKLYNFPTNFITILLMNYLLITLIVIV KITKLFKGPIRMMS" CDS 10498..11634 /note="NCBI gi: 1166541" /codon_start=1 /transl_table=5 /product="cytochrome b" /db_xref="PID:g1166541" /translation="MNKPLRNSHPLFKIANNALVDLPAPINISSWWNFGSLLGLCLII QILTGLFLAMHYTADINLAFYSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRG IYYGSYKFTPTWLIGVIILFLVMGTAFMGYVLPWGQMSFWVATVITNLLYAIPYLGMD LVQWLWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDK IPFHPYFTFKDIVGFIVMIFILISLVLISPNLLGDPDNFIPATPLVTPAHIQPEWYFL FAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPINQVMFWSMLVTVI LLTWIGARPVEEPYVLIGQILTVVYFLYYLVNPLITKWWDNLLN" tRNA 11637..11702 /product="tRNA-Ser (UGA)" CDS complement(11720..12658) /note="NCBI gi: 1166542" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 1" /db_xref="PID:g1166542" /translation="MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKV GLMGIPQPFCDAIKLFTKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPFFVKLYSF NLGGLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFL IGSYNMIYFFFYQVYMWFLIILFPMALVWVSISLAETNRNPFDFAEGESELVSGFNVE YSSGGLALIFMAEYASILFMSMLFCVIFLPCDVFNLLIYMKLTFISFVFIWVRGTLPR FRYDKLMYLAWKCFLSFSLNYLLFFIGFKILLFSLL" tRNA complement(12669..12733) /product="tRNA-Leu (UAG)" rRNA complement(12734..14058) /product="large rRNA" tRNA complement(14058..14130) /product="tRNA-Val (UAC)" rRNA complement(14131..14916) /product="small rRNA" rep_origin 14917..19517 /note="A+T region containing origin of replication" repeat_unit 15566..15938 /note="repeat I-A" repeat_unit 15939..16276 /note="repeat I-B1" repeat_unit 16277..16621 /note="repeat I-C/A" repeat_unit 16622..16959 /note="repeat I-B2" repeat_unit 16960..17304 /note="repeat I-C" misc_feature 17407..17427 /note="deoxythymidylate stretch" repeat_unit 17428..17564 /note="partial repeat" repeat_unit 17565..18028 /note="repeat II-A" repeat_unit 18029..18492 /note="repeat II-B1" repeat_unit 18493..18956 /note="repeat II-B2" repeat_unit 18957..19420 /note="repeat II-C" misc_feature complement(19481..19501) /note="deoxythymidylate stretch" BASE COUNT 8152 a 2003 c 1479 g 7883 t ORIGIN BASE COUNT 539 a 79 c 147 g 560 t 9450 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~guuagu 781 uuuuauuuau uaauuuuuau uauuuuuuaa aaaauuau>- ---------- |---uagaa- 841 -au(aacu)a uaa------- ---------- ---------- ---------- ---------- 901 ---------- --aauuu-aa |agu-uuUA- -GUAU-U(-G UUUA)AAGAA -Aaaau---- 961 -------<-- -----aauuu uaauaauagu uuauu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAUU( -GUAA-)AAG ---AAA-AU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua------au uugaaaaaau uuuauuuu-- 1861 ----->aaaa gaaaau---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuaauuu 2041 --)------- -----auu-G UACCUU(GU- GUAUC)AGUG |UUU-AUUAA AU-aa--aa- 2101 aauaa----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- auau->---- --(------) ---------- ---------- ------uuau 2701 uuu--uCUCG AU-UUUAA-A AG-AGUUAAU AUA-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------u-U AA-GUUAAU( GUGAUAA-A) AUUA-UUUA- --UAAUAUU- AUAUUAG-AA 2881 AU(G-AAAU) GUU-AUUC-G U-UUUUAAAG GUAUCU-AGU UUUUU--AAG AA-AUA-AAU 2941 (-UUA-)AUU UA-GA-AAUU AUA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< aauuuacuua 3121 auua(((((( uuuauu)uaa uuaauua--- ---------- ---------- ---------- 3181 ----auu--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UA-U -AAUU--UUA AUGUU--UU- AU-GG(-GAU 3481 AAG)CUAUAA AA-UA----a auu---(--- ----)----- --uuu-a--a aaaua----- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ------uuaa auagauuuaa ua>AAUAU-A UGC(UUAGAA 3781 UU-A)-GCAA -UUAU|U(A- AA)-|AAAUG U(--GUUAUA )AU|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- uauu--uau| u--a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --uuuuaauu -a-----uuu aUUAA-AA|- UG-UUAGUUu u--a------ 4501 ---------- ---------- (a-uua-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------ua| aaAUUAAGUA AUAAUGA-UA 4681 AA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<-----u 5701 aauaauguua ---aaauuaa uu-------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---uaua-u gaaaaGUUUA -AAUA-AAGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a aUAAUAUU|C GC---CUG-U UU(AACAA)A AA-CAUG-UC 6841 UUU---|--- ---------- ---------- (-uugaauua uauau-)--- ---------- 6901 ---------- ----AAAGUC UAACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aau)------ ---------- ---------| 7141 ---UUUA-AA U-|GG-C|-C -GCAGU-(AU -UUUG)ACUG UG|C(AAA)- GGuuAGCUAA 7201 AUC-AU-U-A |GUCUUU(-U AAUU-)GAAG GC|UG-GAAU GAAUGGUUGG A-CGAAAUAU 7261 UA-------- ---------- -------ACU GUUUCAUUUA AAAU-UUUUA ----UAGAAU 7321 UU|U|AUUUU UU-AG(U-CA AAAAG)CUAA AAU----UUA UUUAAAAGAC GAGAAG-ACC 7381 CUAUAA-|-A UCUUU--AUA UU|--U-uuu uuu--auu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---uuaauua uauag-auua 7561 au-uaaauuu u--------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -aaua-a-au -aaa--A-AU AUUUUAUUG( 8161 GGG)UG-AU- A|UUAAAA(- --------UU UAA-AAAAC- )UUUU-AA|U |U|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u uuuaa-aaa( -ca-uaaa-- )uuuau--ga a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------uu UGAUC-cauu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa u-)--|---a 9001 auGAUUAAA- |AAA-UUAAG UUACUU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUGGAG 9061 AG(U--UCAU )AUCGAUAAA --AAAGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAU| 9121 AU-AAUUUUG GG-UG(--UA -GC)CGUUCA AA-U-UUU|A AGUC(UGUUC )GACUU-UUA 9181 A--AUUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-U(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUAAA-- --|-|<---- ---------- ---------- ---------- ----aaauua 9301 >--------- ---------- ---uGAU-AU UU--(UAGU- AC(-GAAA)G GACC-)AAAU 9361 A--UCa<--- ---------- ---------- -------->- aaaua----- ---------- 9421 -|-------- (auua-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- -----uauuu u--------- ---------- ---------- 9601 ---------- -----uuaua (agaaua-uu auuaa)u-au -aa------- -a~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.yakub 10775 bp RNA RNA 25-JAN-1985 DEFINITION Mitochondria Drosophila yakuba. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Drosophila yakuba. ORGANISM Mitochondria Drosophila yakuba. REFERENCE 1 (bases 1 to 1121) AUTHORS No information JOURNAL June 25 1985 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X03240 Phylo:Mitochondria,Animal,Insect,Drosophila BASE COUNT 554 a 79 c 142 g 551 t 9449 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~uuaua 781 uuuuauuuau uaauuuuaau uauuuuauau aaaaauau>- ---------- |---uagaa- 841 -au(aacu)a uaa------- ---------- ---------- ---------- ---------- 901 ---------- --auuua-aa |agu-uuUA- -GUAU-U(-G UUUA)AAGAA -Aaaau---- 961 -------<-- -----aauuu uaauaauagu auauu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAUU( -GUAA-)AAG ---AAA-AU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua------au uugaaaaaau uuuauuuu-- 1861 ----->aaaa gaaaau---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuaauuu 2041 --)------- -----auu-G UACCUU(GU- GUAUC)AGCG |UUU-AUUAA AU-aa--aa- 2101 aauaa----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- auau->---- --(------) ---------- ---------- ------uuau 2701 uuu--uCUCG AU-UUUAA-A AG-AGUUAAU AUA-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------u-U AA-GUUAAU( GUGACAA-A) AUUA-UUUA- --UAAUAUU- AUAUUAG-AA 2881 AU(G-AAAU) GUU-AUUC-G U-UUUUAAAG GUAUCU-AGU UUUUU--AAG AA-AUA-AAU 2941 (-UUA-)AUU UA-GA-AAUU AUA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< aauuuauuua 3121 auua-----( uuuauu)uaa uuaaaua--- ---------- ---------- ---------- 3181 ----auu--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UA-U -AAUU--UUA AUAUU--UU- AU-GG(-GAU 3481 AAG)CUAUAA AA-UA----a auu---(--- ----)----- --uuu-a--a aaaua----- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ------auaa auaaauuuaa ua>AAUAU-A UGC(UUAGAA 3781 UU-A)-GCAA -UUAU|U(A- AA)-|AAAUG U(--GUUAUA )AU|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- uauu--uau| u--a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --uuuuaauu -a-----uuu aUUAA-AA|- UA-UUAAUUu u--a------ 4501 ---------- ---------- (a-uau-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------ua| aaAUUAAGUA AUAAUGA-UA 4681 GA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<-----u 5701 aauauuguua ---aaauaaa uu-------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---uuua-u gaaaaGUUUA -AAUA-AAGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a aUAAUGUU|C GC---CUG-U UU(AACAA)A AA-CAUG-UC 6841 UUU---|--- ---------- ---------- (-uugaauua uauau-)--- ---------- 6901 ---------- ----AAAGUC UAACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aau)------ ---------- ---------| 7141 ---UUUA-AA U-|GG-C|-C -GCAGU-(AU -UUUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-A |GUCUUU(-U AAUU-)GAAG GC|UG-GAAU GAAUGGUUGG A-CGAAAUAU 7261 UA-------- ---------- -------ACU GUUUCAUUUA AAUU-UA-AA -a--UAGAAU 7321 UU|U|AUUUU UU-AG(U-CA AAAAG)CUAA AAU----UAA UUUAAAAGAC GAGAAG-ACC 7381 CUAUAA-|-A UCUUU--AUA UU|--U-uau uu---auu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---uuaauua uaaag-auua 7561 au-uuaauuu u--------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -aaua-a-au -uaa--A-AU AUUUUAUUG( 8161 GGG)UG-AU- A|UUAAAA(- --------UU UAA-AAAAC- )UUUU-AA|U |U|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u u-aaa-aaa( -cauuaa--- )uuuau--ga a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------au UGAUC-Cauu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa u-)--|---a 9001 auGAUUAAA- |AAA-UUAAG UUACUU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUGGAG 9061 AG(U--UCAU )AUCGAUAAA --AAAGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAU| 9121 AU-AAUUUUG GG-UG(--UA -GC)CGUUCA AA-U-UUU|A AGUC(UGUUC )GACUU-UUA 9181 A--AUUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-U(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUAAA-- --|-|<---- ---------- ---------- ---------- ----aaauua 9301 >--------- ---------- ---uAAU-AU UU--(UAGU- AC(-GAAA)G GACC-)AAAU 9361 A--UUa<--- ---------- ---------- -------->- aaaua----- ---------- 9421 -|-------- (auua-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- -----uauuu uu-------- ---------- ---------- 9601 ---------- -----auaua (agaaua-uu auuaa)u-au -au------- -aauaa~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.quadr 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Anophelies quadrimaculatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Anophelies quadrimaculatus. ORGANISM Mitochondria Anophelies quadrimaculatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L04272 LOCUS MSQNCATR 15455 bp ds-DNA INV 13-APR-1994 DEFINITION Anopheles quadrimaculatus NADH dehydrogenase subunits (1-4, 4L, 5-6); cytochrome oxidase subunits (1-3); adenosine triphosphatase subunits (6,8); cytochrome b; transfer RNA; ribosomal RNA (large and small subunits). ACCESSION L04272 KEYWORDS NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; adenosine triphosphatase subunit 6; adenosine triphosphatase subunit 8; cytochrome b; cytochrome oxidase subunit 1; cytochrome oxidase subunit 2; cytochrome oxidase subunit 3; ribosomal RNA large subunit; ribosomal RNA small subunit; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Val. SOURCE Mitochondrion Anopheles quadrimaculatus (strain Orlando, organelle Mitochondrion Anopheles quadrimaculatus) DNA. ORGANISM Mitochondrion Anopheles quadrimaculatus Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelelinae. REFERENCE 1 (bases 1 to 15455) AUTHORS Cockburn,A.F., Mitchell,S.E. and Seawright,J.A. TITLE Cloning of the Mitochondrial Genome of Anopheles quadrimaculatus JOURNAL Arch. Insect Biochem. Physiol. 14, 31-36 (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 15455) AUTHORS Mitchell,S.E., Cockburn,A.F. and Seawright,J.A. TITLE Complete Sequence of the Mitochondrial Genome of Anopheles quadrimaculatus JOURNAL Unpublished (1992) STANDARD full automatic COMMENT NCBI gi: 342501 FEATURES Location/Qualifiers tRNA 1..64 /anticodon=(pos:31..33,aa:Ile) /product="transfer RNA-Ile" /note="putative" tRNA complement(66..134) /anticodon=(pos:102..104,aa:Gln) /product="transfer RNA-Gln" /note="putative" tRNA 134..202 /anticodon=(pos:164..166,aa:Met) /product="transfer RNA-Met" /note="putative" tRNA 1227..1295 /anticodon=(pos:1257..1259,aa:Trp) /product="transfer RNA-Trp" /note="putative" tRNA complement(1295..1358) /anticodon=(pos:1327..1329,aa:Cys) /product="transfer RNA-Cys" /note="putative" tRNA complement(1359..1424) /anticodon=(pos:1391..1393,aa:Tyr) /product="transfer RNA-Tyr" /note="putative" tRNA 2960..3025 /anticodon=(pos:2989..2991,aa:Leu) /product="transfer RNA-Leu" /note="putative" tRNA 3712..3772 /anticodon=(pos:3742..3744,aa:Lys) /product="transfer RNA-Lys" /note="putative" tRNA 3787..3860 /anticodon=(pos:3823..3825,aa:Asp) /product="transfer RNA-Asp" /note="putative" tRNA 5483..5549 /anticodon=(pos:5514..5516,aa:Gly) /product="transfer RNA-Gly" /note="putative" tRNA 5902..5965 /anticodon=(pos:5931..5933,aa:Arg) /product="transfer RNA-Arg" /note="putative" tRNA 5966..6031 /anticodon=(pos:5995..5997,aa:Ala) /product="transfer RNA-Ala" /note="putative" tRNA 6033..6099 /anticodon=(pos:5063..5065,aa:Asn) /product="transfer RNA-Asn" /note="putative" tRNA complement(6100..6166) /anticodon=(pos:6142..6144,aa:Ser) /product="transfer RNA-Ser" /note="putative" tRNA 6168..6233 /anticodon=(pos:6199..6201,aa:Glu) /product="transfer RNA-Glu" /note="putative" tRNA complement(6232..6298) /anticodon=(pos:6264..6266,aa:Phe) /product="transfer RNA-Phe" /note="putative" tRNA complement(8029..8104) /anticodon=(pos:8072..8074,aa:His) /product="transfer RNA-His" /note="putative" tRNA 9746..9810 /anticodon=(pos:9776..9778,aa:Thr) /product="transfer RNA-Thr" /note="putative" tRNA complement(9811..9872) /anticodon=(pos:9844..9846,aa:Pro) /product="transfer RNA-Pro" /note="putative" tRNA 11542..11607 /anticodon=(pos:11570..11572,aa:Ser) /product="transfer RNA-Ser" /note="putative" tRNA complement(12578..12643) /anticodon=(pos:12612..12614,aa:Leu) /product="transfer RNA-Leu" /note="putative" rRNA complement(12644..13964) /product="ribosomal RNA large subunit" /note="putative" tRNA complement(13965..14036) /anticodon=(pos:14001..14003,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA complement(14037..14830) /product="ribosomal RNA small subunit" /note="putative" source 1..15455 /organism="Mitochondrion Anopheles quadrimaculatus" /strain="Orlando" /mitochondrion="Mitochondrion Anopheles quadrimaculatus" /sequenced_mol="DNA" /note="Sequence determined in part by overlap with internal peptide fragments" CDS 203..1228 /note="putative; NCBI gi: 471963." /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="IKKISNNIFFITLIFGTLVTISSNSWLGAWMGLEINLLSFIPLM NDNKKNLLTSESSLKYFLTQAFASSILLFAIIMLMFFYNNNFLLMNNYNEILILSTLL LKSGAAPFHFWFPEVMEGLSWINGLFLMTWQKIAPLMLISYNFIYNFFMISIILSMLI GSLGGLNQTSIRKLMAFSSINHLGWMLLAMMNNEMLWMTYFLIYSLLSISIVLMFNNF KLFYFNQIFNISLMNPIIKLLIFLNLLSLGGLPPFLGFLPKWLVIQNLTNMGQLFILT ISVCLTLITLFFYLRLSYSIFMLNYQKNSWMLKNNYNNKMSSINLLLNFISISGLIMI FMIYMIM" CDS 1423..2964 /partial /note="putative; NCBI gi: 471964." /product="cytochrome oxidase subunit 1" /codon_start=1 /translation="SRQWLFSTNHKDIGTLYFIFGAWAGMVGTSLSILIRAELGHPGA FIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWM LPPSLTLLISSSMVENGAGTGWTVYPPLSSGIAHAGASVDLAIFSLHLAGISSILGAV NFITTVINMRAPGITLDRMPLFVWSVVITAVLLLLSLPVLAGAITMLLTDRNLNTSFF DPAGGGEPNLYQHLFWFFGHPEVYILILPGFGMISHIITQESGKKETFGNLGMIYAML AIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATMHGTQLTYSP AMLWAFGFVFLFTVGGLTGVVLANSSIDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFI HWYPLLTGLTMNPNWLKLQFAMMFVGVNLTFFPQHFLGLAGMPRRYSDFPDSYLAWNI VSSLGSTISLFAILYFLFIIWESMITQRTPAFPMQLSSSIEWYHTLPPAEHTYAELPL LTNNF" CDS 3027..3711 /transl_except=(pos:3711..3711,aa:OTHER) /note="stop=T; putative; NCBI gi: 471965." /product="cytochrome oxidase subunit 2" /codon_start=1 /translation="MATWANLGLQDSSSPLMEQLNFFHDHTLLILTMITILVGYIMGM LMFNQFTNRYLLHGQTIEIIWTVLPAIILMFIALPSLRLLYLMDEINTPSITLKSVGH QWYWSYEYSDFLNLEFDSYMIPTNELETNGFRLLDVDNRVVLPVNNQIRILVTATDVL HSWTVPSLGVKVDATPGRLNQLNFLINRPGLFFGQCSEICGANHSFMPIVIESIPMNY FIKWITNMTNX" CDS 3861..4022 /note="putative; NCBI gi: 342505." /product="adenosine triphosphatase subunit 8" /codon_start=1 /translation="IPQMAPINWLILFFIFSITLVIFNILNYFCFSYTPMKTSQSLNI KFNKLNWKW" CDS 4016..4696 /note="putative; NCBI gi: 471966." /product="adenosine triphosphatase subunit 6" /codon_start=1 /translation="MMTNLFSVFDPSTTILNLSLNWLSTFLGLLLIPFSFWLLPNRFQ VVWNNILLTLHKEFKTLLGPSGHNGSTLMFISLFSLIMFNNFLGLFPYIFTSTSHLTL TLALAFPLWLSFMLYGWINHTQHMFAHLVPQGTPPVLMPFMVCIETISNVIRPGTLAV RLTANMIAGHLLLTLLGNTGPMTTNYIILSLILTTQIALLVLESAVAIIQSYVFAVLS TLYSSEVN" CDS 4696..5482 /transl_except=(pos:5482..5482,aa:OTHER) /note="stop=T; putative; NCBI gi: 471967." /product="cytochrome oxidase subunit 3" /codon_start=1 /translation="MSAHANHPFHLVDYSPWPLTGAIGAMTTVSGLVQWFHQYTMTLF ILGNIITILTMYQWWRDISREGTFQGLHTFPVTIGLRWGMILFIVSEIFFFISFFWAF FHSSLSPTIELGMTWPPVGIIAFNPFQIPLLNTAILLASGVTVTWAHHALMESNHSQA TQGLFFTIVLGIYFSILQAYEYIEAPFTIADAVYGSTFYMATGFHGLHVLIGTTFLLI CFLRHINFHFSKNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGSX" CDS 5550..5903 /note="putative; NCBI gi: 471968." /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MLMLSIMATIIFIITIVVMMLATLLSKKTLLDREKCSPFECGFD PMNSSRLPFALRFFLIAIIFLIFDVEIALLLPMVMIIKTSNLMNWTMTSFFFIFILLI GLYHEWNQGALEWNN" CDS complement(6298..8028) /note="putative; NCBI gi: 471969." /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="INYCKISFYFLLSISLSLFLISLKFLLKDLVYFIEWEAWVFKSM SIVMTFLFDWMSLMFMSFVLLISSLVIFYSNQYMEEDYNINRFILLVLMFVMSMMMLI ISPNLISILLGWDGLGLVSYCLVIYFQNVKSYNAGMLTALSNRIGDVALLLAIAWMLN YGSWNYIFYLEMMSKNTEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVH SSTLVTAGLYLLIRFNILLTDWWMGQFMLLISGLTMFMAGLGANFEFDLKKIIALSTL SQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMS MPLTCSCFNVANLALCGMPFLAGFYSKDLILEMVSLSYVNVFSFFLFFFSTGLTVCYS FRLVYYSMTGDFNSSVLHPLNDSGWTMLFSIFFLMIMAVIGGSMLSWLMFLNPSMICL PFDLKMLTLFVCILGGLIGYLLSNVSLFFTNKALYFYNFTYFAGSMWFMPVVSTIGVI NYPLKLGLYSYKSFDQGWSEFFGGQMIYNQLKNYSLYLQEFQMNSLKIYLLSYMLWFI VLLMLVVLVN" CDS complement(8103..9446) /partial /note="putative; NCBI gi: 471970." /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKLIFMMLFMFPLSFLKNSYWMVQNLIFLLAFIFMINLSSMNY FNYISYYFGLDMISYGLILLSFWICGLMLMASEKVFTYNNYKNLFIFMILFLLFMLVL TFSSMSVFMFYLFFEASLIPTLFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFY ILNFMDTLSFTLLLNYMFTDMNLLYLSLIFAFLVKMPMFLVHLWLPKAHVEAPVSGSM ILAGILLKLGGYGLLRMFSLLQVSGIKYNYWWISVSLIGGVLISLVCLRQTDLKALIA YSSVAHMGIVLSGLLTMTYWGLTGSYALMIAHGLCSSGLFCLANISYERMGSRSLLIN KGLLNFMPTLSLWWFLLCSGNMAAPPTLNLLGEISLLNSIVSWSWVTMIMLAFLSFFS AAYSLYLFAYSQHGKIFSGVYFFSVGTTREFLLLMLHWLPLNMLILKSGFCMLWLY" CDS complement(9440..9739) /note="putative; NCBI gi: 471971." /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MANMFLMFYLSMIMFLFGCMVFVSNRKHLLSTLLSLEYMVLSLF IFLFFYLNFMNYEMYFSMFFLTFCVCEGVLGLSILVSMIRTHGNDYFQSFSILQC" CDS 9879..10403 /note="putative; NCBI gi: 471972." /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="ITKLIIMTICLIISFIFMQMKHPLSMGLMLLTQTFLTCLLTGIY VKTFWFSYVLFLIFLGGMLILFIYVHSLSSNEMFTMSFNLTTLSLLIFFLMTLFFFII DKSLIEQFISNMEMEMFSFNNNLINENILFLNKMYNFPTNLITLLLINYLFLTLLVTV KITKKFYGPLRPMN" CDS 10403..11539 /note="putative; NCBI gi: 471973." /product="cytochrome b" /codon_start=1 /translation="MFKPIRKTHPLISIANNALVDLPAPSNISAWWNFGSLLGLCLML QILTGLFLAMHYAADIETAFNSVNHICRDVNNGWFLRICHANGASFFFACLFMHVGRG VYYESYLYHMTWNTGVIILFLTMATGFLGYVLPWGQMSFWGATVITNLLSAVPYLGMD LVQWIWGGFAVDNTTLTRFFTFHFIFPFIILALMMIHLLFLHQTGSNNPLGLNSNVDK IPFHPYFIYKDIFGFIVFYWILIRFIWKFNYLLMDPENFIPANPLVTPVHIQPEWYFL FAYAILRSIPNKLGGVIALVLSIAILLILPFTHSSKFRGLQFYPLNQILFWNMVVVAS LLTWIGARPVEDPYVLTGQILTVLYFSYFIINPLLAKYWDKLLN" CDS complement(11627..12571) /note="putative; NCBI gi: 471974." /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="IFDKIMPLIGSLLLVICVMVGVAFLTLLERKVLGYIQIRKGPNK VGFNGLLQPFSDAVKLFTKEQTYPLLSNYISYYFSPIFSLFLSLVIWMCIPYLIKLYS FNLGVLFFLCCTSLGVYTVMIAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIF LIGNYNFLNFYSYQSYIWFIFFCFPLGLVWLASCLAETNRTPFDFAEGESELVSGFNV EYSSGGFALIFLAEYSSILFMSMLFVVIFLGSDIYSLMFFFKLTFISFVFIWVRGTLP RFRYDKLMYLAWKSFLPLSLNYLFFFVGLKIFFISLLF" BASE COUNT 6221 a 2067 c 1432 g 5735 t ORIGIN BASE COUNT 505 a 78 c 157 g 581 t 9454 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~uaaa 781 auuuauuuau uaauuauuuu uuuuuauuug auuauuaa>- ---------- |-----uaa- 841 -aa(auaa)u uuuaaau--- -uua------ ---------- ---------- ---------- 901 ---------- --------au |agu-uuUA- -GUAA-U(-U UAUA)AUGAA -Auaau---- 961 -------<-- -----aauuu uaauuauagu guauu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAUU( -UUAA-)AAG ---AAU-AU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua------au uugaaaaauu uuuauuuu-- 1861 ------aaaa gaaaau---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuaauuu 2041 --)------- -----auu-G UACCUU(GU- GUAUC)AGGG |UUU-AUUaa au-aaa-ua- 2101 auuau----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- uaua->---- --(------) ---------- ---------- ------uuaa 2701 uuu-uuCUCG AA-UUUUA-A AG-AUUUAAU UAU-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------g-A AA-GUUAUU( GUGGAAU-A) ACUA-UUUU- --ACAUAUA- UAAUUAG-AA 2881 AU(G-AAAU) GUU-AAUC-G U-UUUAAAAU AUAUCU-AGU UUUUU--AAG AA-AUA-AAU 2941 (-UUA-)AUU UA-GG-UUUA UUU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< auuuuauuag 3121 uauu(((((( -uuuuu)aau -uuaaua--- ---------- ---------- ---------- 3181 ----aau--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GG-A -UAAU-AAUA AUAUU--UU- AA-GG(-GAU 3481 UAG)CUUUAA AA-UA----a auu---(--- ----)----- --uuu-a-ua -uuuuu---- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- -------agu aauuuuaaaa ua>aauaU-A AGC(UUAAAA 3781 AU-A)-GCUA -Uuau|U(G- AU)-|AAUUU U(--GUUAUA )AU|-UUA-- -------- ---------- -------aa| aaAUUUAUUA AUUAUGA-UA 4681 AA|AUUAGUA -UA------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------u uaguuuauaa aauguaauuu auuugauag- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |--------- -----GUUUU -AAUG-AAGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )------uua aAUAUAUU|C AC---CUG-U UU(AACAA)A AA-CAUG-UC 6841 UUU---|--- ---------- ---------- (-uuguauuu uauuu-)--- ---------- 6901 ---------- ----AAAGUC UAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aau)------ ---------- ---------| 7141 ----UUA-AA G-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AA-U-A |GUCUUU(-U AAUU-)GAAG GC|UG-GUAU GAAUGGUUGA A-UGAGAUAU 7261 AU-------- ---------- -------ACU GUUUUUUUAA AAUu-uu-ua ----UAGAAC 7321 UU|U|AUUUU UU-AG(U-UA AAAAG)CUAA AAU----UUA AUUAAAGGAC GAGAAG-ACC 7381 CUAUAG-|-A UCUUU--AUU UU|------- ---------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uauaaa uuauaaauua uaaagaauuu 7561 uaaaauuuau auuuuaaau- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------- ------A-AA AUUUUACUG( 8161 GGG)UG-GU- A|UUAAAA(- --------UU UAA-UAAAC- )UUUU-AU|U |U|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u uauu--uaa( -cauuga--- )uu-u-auga a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 u|------ua AGAUC-cugu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au u-)--|---a 9001 uggauuaAA- |AAA-UUAAG UUACCU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUAGAG 9061 AG(U--UCAU )AUCGAUAAA --AAAGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAG| 9121 UU-AUUUUUA GG-UG(--UA -GA)AGUUUA AA-G-UUU|A GGUC(UGUUC )GACCU-UUA 9181 G--AUUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-C(GU AA)--CAGGU UGGUUUCUAU 9241 CC|UUAAU-- --|-|<---- ---------- ---------- ---------- ----uaauua 9301 >--------- ---------- ---uUAU-AU UG--(UAGU- AC(-GAAA)G GACC-)UAAU 9361 A--UAa<--- ---------- ---------- -------->- aaaau----- ---------- 9421 -|-------- (aua--)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- -----auuuu -aau------ ---------- ---------- 9601 ---------- -----uaauu (gaaaa---u uauu-)a-au -auu------ -auuu~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.gambi 10775 bp RNA RNA 26-APR-1995 DEFINITION Mitochondria Anopheles gambiae str. G3; NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; adenosine triphosphatase subunit 6; adenosine triphosphatase subunit 8; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION L20934 KEYWORDS NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; adenosine triphosphatase subunit 6; adenosine triphosphatase subunit 8; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondria Anopheles gambiae str. G3. ORGANISM Mitochondria Anopheles gambiae. REFERENCE 1 (bases 1 to 15363) AUTHORS Beard,C.B., Hamm,D.M. and Collins,F.H. TITLE The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects JOURNAL Insect Mol. Biol. 2, 103-104 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L20934 BASE COUNT 567 a 88 c 174 g 616 t 9330 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aga uaagucguaa 661 cauaguagau guacuggaaa guguaucuag aaugacaauu uaaagcuuaa uuaguaaagu 721 auuucauuua cauugaaaag aaauuugugc aaaucaauuu aaauuga[ua auaauuauuu 781 auuaauuauu uuuuuuuauu uauaauuauu aauaaaaa>- ---------- |--------- 841 -ua(auuu)u auuuuuu--- -au------- ---------- ---------- ---------- 901 ---------- ---------- |agu-uuUA- -GUAA-U(-U UAUA)AUGAA -auaau---- 961 -------<-- -----aauuu uaauuauagu guauu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAUU( -UUAA-)AAG ---AAU-AU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua------au uugaaaaauu uuuaauuu-- 1861 ----->uuaa gaaaau---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuaauuu 2041 --)------- -----auu-G UACCUU(GU- GUAUC)AGGG |UUU-AUUaa au-aau-aa- 2101 auuau----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- uaua->---- --(------) ---------- ---------- ------auaa 2701 uuu-uuCUCG AA-UUUUA-A AG-AUUUAAU UAU-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------a-A AA-GUUAUU( GUGGAAU-A) ACUA-UUUU- --AAAUAUG- UAAUUAG-AA 2881 AU(G-AAAU) GUU-AAUC-G U-UUUAAAAU AUAUCU-AGU UUUUU--AAG AA-AUG-AAU 2941 (-UUA-)AUU UA-GC-UUAU UUA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuuuauuaag 3121 uuaa-----( uuuu)uuaau uuaauaa--- ---------- ---------- ---------- 3181 ----u----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UA-A -AUAA-agua AUAUU--UU- AA-GG(-GAU 3481 GAG)CUUUAA AA-UA----a aau---(--- ----)----- --uuu-a--u -a-------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- -uuuuuuaua auuuuuaaau aa>-aUAU-A AGC(UUAAAA 3781 AU-A)-GCUA -Uua-|u(u- aa)u|AAAUU U(--GUUAUA )AU|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- -------uu| u--a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---uuaaauu -a-----uuu auUAA-AA|- UU-UAAAUUu u--------- 4501 ---------- ---------- (aauaa-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------aa| aaAUUUAGUA AUUAUGA-UA 4681 AA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<----ua 5701 aauuuauaua aaguaauuaa uuugauagg- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |--------- ------UUUU -AAUG-AAGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )------uua aAUAUAUU|C AC---CUG-U UU(AACAA)A AA-CAUG-UC 6841 UUU---|--- ---------- ---------- (-uuguauuu uauuu-)--- ---------- 6901 ---------- ----AAAGUC UAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- guu)------ ---------- ---------| 7141 ----UUA-AA G-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AA-U-A |GUCUUU(-U AAUU-)GAAG GC|UG-GUAU GAAUGGUUGA A-UGAGAUAU 7261 AU-------- ---------- -------ACU GUUUUUUUAA AAuu-ua-ua ----UAGAAC 7321 UU|U|AUUUU UU-AG(U-UA AAAAG)CUAA AAU----UUA AUUAAAAGAC GAGAAG-ACC 7381 CUAUAG-|-A UCUUU--AUU UU|--u--au aaa--uua-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------uaaa uuaua-aa(g 7561 aa-u)uuuaa aauuuau--- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -auuu-u-aa -au---A-AA AUUUUACUG( 8161 GGG)UG-GU- A|UUAAAA(- --------UU AAA-UAAAC- )UUUU-AU|U |A|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u uu-au--uu( acauuga--- )uuuau--ga a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------aa AGAUC-cugu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uu u-)--|---a 9001 uggAUUAAA- |AAU-UUAAG UUACCU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUAGAG 9061 AG(U--UCAU )AUCGAUAAA --AAAGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAG| 9121 UU-AUUUUUA GG-UG(--UA -GA)AGUUUA AA-G-UUU|A GGUC(UGUUC )GACCU-UUG 9181 A--AUUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-C(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUAAU-- --|-|<---- ---------- ---------- ---------- ----aaauua 9301 >--------- ---------- ---UUAU-AU UG--(UAGU- AC(-GAAA)G GACC-)UAAU 9361 A--UAA<--- ---------- ---------- -------->- aaaa------ ---------- 9421 -|-------- (uauaa)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ------uuuu auu------- ---------- ---------- 9601 ---------- -----uaaau (-gaaaa-uu auua-)a-aa uaa------- uuu]~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.dispa 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Lymantria dispar. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Lymantria dispar. ORGANISM Mitochondria Lymantria dispar. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L32141 LOCUS LYARRLSUB 1355 bp ss-rRNA RNA 28-APR-1994 DEFINITION Mitochondrion Lymantria dispar ribosomal RNA large subunit. ACCESSION L32141 KEYWORDS ribosomal RNA large subunit. SOURCE Mitochondrion Lymantria dispar (organelle Mitochondrion Lymantria dispar) (library: lambda ZAP) female instar, last larval brain cDNA to rRNA. ORGANISM Mitochondrion Lymantria dispar Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Noctuoidea; Lymantriidae. REFERENCE 1 (bases 1 to 1355) AUTHORS Davis,R.E., Kelly,T.J., Masler,E.P., Thyagaraja,B.S., Rote,C.A. and Imberski,R.B. TITLE Complete base sequence for the mitochondrial large subunit ribosomal RNA of the gypsy moth, Lymantria dispar (L.):an abundant sequence in gypsy moth cDNA libraries JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 475797 FEATURES Location/Qualifiers rRNA 1..1355 /product="ribosomal RNA large subunit" /partial /note="putative" source 1..1355 /organism="Mitochondrion Lymantria dispar" /mitochondrion="Mitochondrion Lymantria dispar" /dev_stage="instar, last larval" /sequenced_mol="cDNA to rRNA" /sex="female" /tissue_type="brain" /tissue_lib="lambda ZAP" BASE COUNT 560 a 69 c 146 g 580 t ORIGIN BASE COUNT 560 a 69 c 146 g 580 t 9420 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ua aaauauuaaa 781 uaaaaaaauu uu-------- ---------- ---------- ---------- ---------- 841 -ua-aauu-u auuaagu--- -auuuuaaug ggg------- ---------- ---------- 901 ---------- ---------- |-gu-uaAA- -GUAU-U(-- UUAA)UAGAA -Aaaau---- 961 -------<-- -----uuaaa uuuuuauagu uaacu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAUU( -GUGA-)GAG ---AAA-UU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua-------a uuauaaaaua uaaauuuauu 1861 a---->aaaa guaauu---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuuauuu 2041 --)------- -----agu-G UAUCUU(GU- GUAUC)AGAG |UUU-AUUaa aa-auu-ua- 2101 uuu------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------ug guua->---- --(------) ---------- ---------- --------aa 2701 auu-uuCUCG AA-UUUAA-A AG-AGCGAAU UAA-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------a-A AA-GUUAUU( GUAGUAA-A) AAUA-UUUU- --UAAUAUU- UAAUUUG-AA 2881 AU(G-AAAU) GUU-AUUC-G U-UUUUAAAU AUAUCU-AGU UUUUU--UAG AA-AAA-AAU 2941 (-UUA-)AUU UU-AA-AUUG AUU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuuaaacauu 3121 uau-----(a uuuuauua)a uaaauuu--- ---------- ---------- ---------- 3181 ----uuaa-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GA-U -UAAU--UUU AUAUU--UU- AA-GG(-GAU 3481 AAG)CUUUAA AU-UA----a auu---(--- ----)----- --aau-a--u -a-------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- --auauuuaa uuuaauauug a--------- ---------- 3781 ---------- -------(-- --)--gaauu ----guauaa uuuauauug- uu-----aaa 3841 a--aauu--u uau--uuuau uauaaauaau uucaauuaau auaaaauuua auuaaaa--- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- -------uu| u--a-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- -----auuuu -a-----uaa gAAAA-UU|- AU-auuuaau a--a------ 4501 ---------- ---------- (--uau-a)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -aUUUAAGUU AUAAUGA-UA 4681 AA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<--aauu 5701 uuuauuaaua uuauuaaauu uaauuuaag- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |--------- -----GUAUU -UUAA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------au uUUAUAUU|C AC---UUG-U UU(AUCAA)A AAgCA-C-UA 6841 UUU---|--- ---------- ---------- (-uugaaaau aauuu-)--- ---------- 6901 ---------- ----AAAGUC UAAUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G AUu------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aau)------ ---------- ---------| 7141 -a-AUUA-AA G-|GG-C|-U -GCAGU-(AU -UUUG)ACUG UA|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-A |GUCAUU(-U AAUU-)GAUG AC|UU-GUAU GAAAGAUUGG A-UGAAAUAU 7261 GA-------- ---------- -------ACU GUCUUUAAAU UAAa-ua--- ----UAGAAU 7321 UU|A|AUUUU UA-AG(U-UA AAAAG)CUUA AAU----AAU UUAAAAAGAC GAGAAG-ACC 7381 CUAUAG-|-A GUUUU--AUU AU|--u-uau uu---aaa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- --uuaauauu uuuau-aa(u 7561 ua-g)uuaua uuuauguuaa u--------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uuu-u-aa -uaa--A-UA AUUUUAUUG( 8161 GGG)UG-AU- A|AAAAAA(- --------UU UAA-UUAAC- )UUUU-UU|A |A|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u uuaaa--aa( aca-uaaa-- )uaagu--ga a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------uu UGAUC-caua ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uu u-)--|---u 9001 augAUUAUA- |AGA-AAAAA UUACCU|UAG G|GAUAACAG |C-GUA-A-U UUUAUUUUUU 9061 AG(U--UCAA )AUAAGAAAU --AGAGUUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAU| 9121 AA-AA-UUCA AA-UG(--CA -GA)AGUUUA AAAG-UUU|U GAUC(UGUUC )GAUCA-UUA 9181 A--AAUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-U(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUUAA-- --|-|<---- ---------- ---------- ---------- ----aaauaa 9301 >--------- ---------- ---aAAU-AU UU--(UAGU- AC(-GAAA)G GAUU-)AAAU 9361 A--UUu<--- ---------- ---------- -------->- aaau------ ---------- 9421 -|-------- (uau--)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ------auuu uuu------- ---------- ---------- 9601 ---------- -----aauuu (-gaauu-uu auua-)a-au aua------- ---------- 9661 ---------- ------------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAUU( -GUGA-)AAG ---AAU-UU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua-------a augaaaaaug aaauuaguu- 1861 ----->aaaa guaaau---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuaauuu 2041 --)------- -----auu-G UAUCUU(GU- GUAUC)AGAG |UUU-AUUaa uu-aaa-aa- 2101 uua------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------ua guuu->---- --(------) ---------- ---------- --------ua 2701 aua-UUCUCG AA-UUUAA-A AG-AGAUAAU UAA-UUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------a-A AA-GUUAUU( GUAGCAU-A) AAUA-UUUU- --AAAUAAU- UAAUUGG-AA 2881 AU(G-AAAU) GUU-AUUC-G U-UUUUAAAU AUAUCU-AGU UUUUU--UAG AA-AAA-AAU 2941 (-UUA-)AUU UU-AU-AUUA UUU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< aaauaaaaaa 3121 uuaa-----( uuaa-)uuaa uuuuuua--- ---------- ---------- ---------- 3181 ----uuu--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-A -UAAU--auu AUAUU--UU- AA-GG(-GAU 3481 AAG)CUUUAA UU-UA----a auu---(--- ----)----- --uau-a--u -a-------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ----aauuuu auuuuaauuu aauuaagauu uuuauaauuu au>------- ---------- 3781 ---------- -------(-- --)------- ---------- ---------- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- -------uu| u--a-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --uuauuuau -a-----aaa aAAAA-AU|- UA-AAAUUU- ---------- 4501 ---------- ---------- (--uau--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| aAAAUUUGAU AUAAUGA-UA 4681 AA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<--uaau 5701 aagauauuaa aauuauaaaa uu-------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |------a-u uuuagUUAAU -AAAA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ua uAUAUAUU|C AC---UUG-U UU(AUCAA)A AA-CAUG-UC 6841 UUU---|--- ---------- ---------- (-uugaauuu aauau-)--- ---------- 6901 ---------- ----AAAGUC UAAUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G AUau------ ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------uau aau)------ ---------- ---------| 7141 au-AUUA-AA G-|GG-C|-U -GCAGU-(AU -AUUG)ACUG UA|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-A |GUCAUU(-U AAUU-)GAUG AC|UU-GUAU GAAAGAUUGG A-UGAAAUAU 7261 AA-------- ---------- -------GCU GUCUCUUUAU UAU--UU-UA ----UAGAAU 7321 UU|A|AUUUU UU-AA(U-UA AAAAG)UUAA AAU----AAA UUAAAAAGAC GAGAAG-ACC 7381 CUAUAG-|-A GUUUU--AUA UU|--U-aaa gu---aau-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -----ugaga uuauu-uaua 7561 aa-guuuuua auuaaa---- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --auu-a-uu -uua--A-uU AUUUUGUUG( 8161 GGG)UG-AC- A|AAAAAA(- --------UA UAA-AAAAC- )UUUU-UU|U |A|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u u--au-uua( aca-uaaa-- )uaagu--ga g--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------ua UGAUC-CAau ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au u-)--|---a 9001 uUGAUUAUA- |AGA-AAAAA UUACCU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUUUUU 9061 AG(U--UCGA )AUAAAAAAA --AGAGUUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAU| 9121 AA-AA-UUUA AA-UG(--UA -GA)AGUUUA AA-A-UUU|U GAUC(UGUUC )GAUCA-UUA 9181 A--AAUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-U(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUUAA-- --|-|<---- ---------- ---------- ---------- --uaaauaua 9301 >--------- ---------- ---aAAU-AU UU--(UAGU- AC(-GAAA)G GAUC-)AAAU 9361 A--UUu<--- ---------- ---------- -------->- aaau------ ---------- 9421 -|-------- (uaa--)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ------auuu auuaa----- ---------- ---------- 9601 ---------- -----auaau (-gaaua-uu auua-)a-uu uauu------ -uuaa~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.mig.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Locusta migratoria. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Locusta migratoria. ORGANISM Mitochondria Locusta migratoria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X80245 LOCUS MTLMCOMP 15722 bp DNA circular INV 06-FEB-1996 DEFINITION L.migratoria mitochondrion complete genome. ACCESSION X80245 NID g1182014 KEYWORDS ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; cytochrome b; D-loop region; ND1 gene; ND2 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; repeat region; rRNA large subunit gene; rRNA small subunit gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-fMet; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE migratory locust. ORGANISM Mitochondrion Locusta migratoria Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Orthopterodea; Orthoptera; Caelifera; Acrididae; Locustinae; Locusta. REFERENCE 1 (bases 1 to 15722) AUTHORS Flook,P.K., Rowell,C.H.F. and Gellissen,G. TITLE The sequence, organisation and evolution of the Locusta migratoria mitochondrial genome JOURNAL J. Mol. Evol. 41, 928-941 (1995) REFERENCE 2 (bases 1 to 15722) AUTHORS Flook,P.K. TITLE Direct Submission JOURNAL Submitted (02-SEP-1994) P.K. Flook, Zoologisches Institut der Univ. Basel, Rheinsprung 9, Basel, SWITZERLAND REMARK sequence revised by author, 25-OCT-94 COMMENT Sequences overlapping with: X13975, X05286, X05287. NCBI gi: 1182014 FEATURES Location/Qualifiers source 1..15722 /organism="Locusta migratoria" /sub_species="migratorioides" /mitochondrion tRNA 1..65 /anticodon=(pos:30..32,aa:Ile) /product="transfer RNA-Ile" tRNA complement(63..131) /anticodon=(pos:99..101,aa:Gln) /product="transfer RNA-Gln" tRNA 131..199 /anticodon=(pos:161..163,aa:Met) /product="transfer RNA-f-Met" CDS 200..1228 /gene="ND2" /note="NCBI gi: 1182024" /codon_start=1 /transl_table=5 /db_xref="PID:g1182024" /translation="MYNNSMKLLFLSSLMMGTYLSISSTPWLGTWMGLEINLLSIIPM LTDNKNSMINEPAIKYFIIQSMASTMLLISILIIQMKYMMWWDNKNIPSMMIMSSMMM KMGAAPFHFWLPEVMSSTSWINCLMLMTWQKIAPMMTMSYCIKMSSFLFVVIMMGIIV GAMGGLNQTSLRQILAYSSISHLGWMISSMTISENTWEFYFLIYSTLNVIIIFMFKTM NLFFLNQIYSASYFKTEIKFMMMTSLLSLGGLPPMLGFLPKWIVMQSLIDNKMTALVL LMITFTTITLYYYMRISFSAIIMLHNENSWLTSIKMNKLVVALPILSMISTMGLICTS NFMLLLSS" tRNA 1219..1285 /anticodon=(pos:1249..1251,aa:Trp) /product="transfer RNA-Trp" tRNA complement(1278..1344) /anticodon=(pos:1313..1315,aa:Cys) /product="transfer RNA-Cys" tRNA complement(1355..1422) /anticodon=(pos:1388..1390,aa:Tyr) /product="transfer RNA-Tyr" unsure 1429..1432 /note="4bp start codon for COI" CDS <1433..2968 /gene="COI" /note="NCBI gi: 1182015" /codon_start=1 /transl_table=5 /db_xref="PID:g1182015" /translation="TQKWLFSTNHKDIGTLYFMFGAWAGMVGTSMSMIIRAELGQPGT MINDDQLYNVIITAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWL LPPSLTLLLMSSVVDNGAGTGWTVYPPLASVIAHSGASVDLAIFSLHLAGVSSILGAI NFITTAINMRSNNMTLDQTPLFVWSVAITALLLLLSLPVLAGAITMLLTDRNLNTSFF DPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVCQESGKIESFGTIGMIYAML SIGLMGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKVFSWMATLYGTKFKFNP PLLWALGFIFLFTMGGLTGLVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGII QWYPLFTGLTMNSKWLKIQFTIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTSWNV ISSIGSTISITGIIMFILIMWESMIKQRNVFIWTNMSSSTEWLQNNPPAEHSYSELPL INL" tRNA 2971..3036 /anticodon=(pos:3000..3002,aa:Leu) /product="transfer RNA-Leu" CDS 3041..3724 /gene="COII" /note="NCBI gi: 1182026" /codon_start=1 /transl_table=5 /db_xref="PID:g1182026" /translation="MATWSNLSLQDGASPLMEQLSFFHDHTMIDLLLITMIVGYSLSY MLLTKYTNRNMLHGHLIETIWTALPAITLIFIALPSLRLLYLLDDSSDAMITIKTIGR QWYWSYEYSDFINVEFDTYMTPENELNTDEFRLLEVDNRTTLPMNTEVRVLTSASDVL HSWAVPALVLKIDATPGRLNQGMFMINRPGLFFGQCSEICGANHSFMPIVIESTSIKL FIKWLSNMM" tRNA 3723..3786 /anticodon=(pos:3753..3755,aa:Asp) /product="transfer RNA-Asp" tRNA 3790..3860 /anticodon=(pos:3820..3822,aa:Lys) /product="transfer RNA-Lys" CDS <3878..4036 /note="NCBI gi: 1182021" /codon_start=1 /transl_table=5 /product="ATPase 8" /db_xref="PID:g1182021" /translation="IPQMSPMMWFSLFIMFSMTMMLFNQLNFFSYKPNKIMSSNNKIK KKNINWMW" CDS 4030..4707 /note="NCBI gi: 1182019" /codon_start=1 /transl_table=5 /product="ATPase 6" /db_xref="PID:g1182019" /translation="MMTNLFSTFDPSTNLFNLSLNWTSTFLGLLLIPSMFWLMPSRIN ILWNKMNLNLHNEFKTLLGKNSFQGSTLILISIFIMMLFNNFMGLFPYIFTSTSHMTL TFSIALPMWMSFMLFGWINNTNHMFTHLVPQGTPNALMSFMVLIETISNVIRPGTLAV RLAANMIAGHLLLTLLGNTGPSLTTSIMLFLIIGQMLLLILESAVAMIQAYVFSILST LYSSEVY" CDS 4712..5503 /gene="COIII" /note="NCBI gi: 1182017" /codon_start=1 /transl_table=5 /db_xref="PID:g1182017" /translation="MLTNNNNHPFHMVDYSPWPLTGAIGAMILTSGMTKWFHTFNMNL LMIGMTVIVLTMIQWWRDVVREGTFQGLHTKLVSKGLRWGMILFIASEVLFFASFFWA FFNSSLAPTIELGMKWPPMGIQPFNPIQIPLLNTAILLASGVTITWAHHSIMECNHSQ ALQGLFFTVMLGFYFTLLQMYEYWEAPFTIADAVYGSTFFVATGFHGLHVIIGTTFLL TCLIRHMMNQFSSNHHFGFEAAAWYWHFVDVVWLFLYLSIYWWGS" tRNA 5507..5569 /anticodon=(pos:5537..5539,aa:Gly) /product="transfer RNA-Gly" CDS 5570..5917 /gene="ND3" /note="NCBI gi: 1182016" /codon_start=1 /transl_table=5 /db_xref="PID:g1182016" /translation="MMMLMTSITISFLLPMIVMLLATTLSKKSINDREKSSPFECGFD PKLNMPFSIQFFLIAVIFLIFDVEIALILPIVIIMKTSNIMVWTLSTMLFIIILLVGL YYEWNQGALKWAN" tRNA 5916..5980 /anticodon=(pos:5945..5947,aa:Ala) /product="transfer RNA-Ala" tRNA 5986..6050 /anticodon=(pos:6015..6017,aa:Arg) /product="transfer RNA-Arg" tRNA 6051..6115 /anticodon=(pos:6081..6083,aa:Asn) /product="transfer RNA-Asn" tRNA 6116..6182 /anticodon=(pos:6141..6143,aa:Ser) /product="transfer RNA-Ser" tRNA 6183..6249 /anticodon=(pos:6214..6216,aa:Glu) /product="transfer RNA-Glu" tRNA complement(6248..6314) /anticodon=(pos:6279..6281,aa:Phe) /product="transfer RNA-Phe" CDS complement(<6315..>8031) /gene="ND5" /translation="ICSLSFFFLFLFSTLFFILGIYYLMIDYSLFIEWELFSLNSSMV VMTFIIDWMSLVFMSFVMYISSLVIYYSNDYMHNEKNINRFIMIVLMFILSMAFLIIS PNLISILLGWDGLGLVSYCLVIYYQNVKSYNAGMLTALSNRIGDVAILISISWMLNFG SWNYIYYYYFISDSFEMKIITLLIILAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS TLVTAGVYLLIRFNPMLMVYDFGWYILFIGCLTMFMSGLGANFEFDLKKIIALSTLSQ LGLMMSILSMGYSDLAFFHLLTHALFKALLFMCAGSMIHNLRDSQDIRFMGSIIHFMP LTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASYSFR LFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPW YLKFLTLLTIILGSYFGYVISDFVYSYELFSLNFLSFVMFTGSMWFMPFLSTNYVSYL PLSFGYYSLKSFDSGWGELLGGQGLYSFFVYLINYIQSLYDSNFKVYLLTFVFWMFIL FVLFFL" tRNA complement(8047..8111) /anticodon=(pos:8077..8079,aa:His) /product="transfer RNA-His" CDS complement(8113..9447) /gene="ND4" /note="NCBI gi: 1182022" /codon_start=1 /transl_table=5 /db_xref="PID:g1182022" /translation="MLKYLFMIIFLIPICLLGNCWWLVHSLIFLLSFIFMISLYSYSD LSMISYYFGVDFYSFMLILLSLWICCLMITASSSIYSSSYHPNFFVFVVLLLLIMLFC SFSSLNLFSFYIFFESSLVPTLFLILGWGYQPERLQAGVYLMFYTLVASLPLLLVLFS INDLFNTLYYPLLIDFGSFYFLFYVFSIFAFLVKMPIFLFHLWLPKAHVEAPISGSMI LAGILLKLGGYGIFRMMKVISCLGLSFNYFVLSLSLFGGVIISFVCFRQVDLKSLIAY SSVAHMSLVICGLMTMNWWGCMGSLSLMIGHGISSSGLFCLSNIIYELLGSRSLLINK GMINLMPSMTIWWFLLSSSNMASPPSLNLLGEFSLLNSIISWSSYMILLLIFLSFFSA VYTLYMYSYSQHGLYYSGVYTCSLGYFREYHLLFLHWFPLNLLCLKGEYFYF" CDS complement(9441..9734) /gene="ND4L" /note="NCBI gi: 1182020" /codon_start=1 /transl_table=5 /db_xref="PID:g1182020" /translation="MSMFGLFTCLSIYFSGVYVFCSKRKHLLVVLLSLEYIVLSLFML IVLFLVEFDYDYFFPVIFLVFSVCEGALGLSILVSMIRSHGNDFFNSFFLSLC" tRNA 9737..9800 /anticodon=(pos:9767..9769,aa:Thr) /product="transfer RNA-Thr" tRNA complement(9801..9867) /anticodon=(pos:9835..9837,aa:Pro) /product="transfer RNA-Pro" CDS 9870..10391 /gene="ND6" /note="NCBI gi: 1182023" /codon_start=1 /transl_table=5 /db_xref="PID:g1182023" /translation="MMKMMIMSSSNLMNINFMKMNHPMSIMMTIIIQTLFISMMTGTM MESFWLSYILLLTFLGGMMVLFIYITSIASNEMFKIKINSIIIIVYMMIILSTLMYKL DKTISTEMIKNSEIMNLNYSINFKEMSTSLVKLYNNPTVIITIMMMIYLFITLLAVVK ITNINQGPMRKMS" CDS 10396..11535 /note="NCBI gi: 1182025" /codon_start=1 /transl_table=5 /product="Cytochrome B" /db_xref="PID:g1182025" /translation="MNKPLRIKHPMIKIINNSLNDLPAPTNISMWWNLGSLLGMCLMI QIVTGLFLTMHYTPNIEMAFSSVVHICRDVNNGWLIRTLHANGASMFFICMYLHVGRG IYYGSYMYMNTWMTGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD IVQWVWGGFAVDNATLNRFYTFHFVLPFIVMAMVMIHLFFLHQTGSNNPIGLNSNIDK IPFHPYFTYKDMITFIILMMILIMLCLIDPYMLGDPDNFVPANPLVTPIHIQPEWYFL FAYAILRSIPNKLGGVIALVMSISILMIMPFYNKTKFRGNQFYPMNQIMFWIMVIVIC LLTWIGKRPVEEPYIMTGQILTIIYFSYFLFNVHIAKMWDTLIKT" tRNA 11535..11604 /anticodon=(pos:11565..11567,aa:Ser) /product="transfer RNA-Ser" CDS complement(11624..12565) /gene="ND1" /note="NCBI gi: 1182018" /codon_start=1 /transl_table=5 /db_xref="PID:g1182018" /translation="MMYDLFMFVLNFLLLIICVLISVAFLTLMERKVLGYIHIRKGPN KVGFLGIPQPFSDAIKLFCKEQPIPFMSNYFLYYFSPVFNLMLSLLIWVIFPYLTYMC SFPYGFYFLCCTSLSVYTFMIAGWSSNSNYALLGSLRSVAQTISYEVSLALILLSLII LIGSFNMLYFMNFQLYCWFIVFSFPLALSFFGSSLAETNRTPFDFAEGESELVSGFNI EYSTGGFTLIFLAEYSSIIFMSMLFSLIFLGGDFYSFYFFFKLSLVSFFFVWVRGTLP RFRYDKLMYLAWKSYLPLSLNFLFFFIGLSVMFFSII" tRNA complement(12569..12635) /anticodon=(pos:12606..12604,aa:Leu) /product="transfer RNA-Leu" rRNA complement(12636..13949) /note="large subunit rRNA" tRNA complement(13950..14020) /anticodon=(pos:13985..13987,aa:Val) /product="transfer RNA-Val" rRNA complement(14021..14847) /note="small subunit rRNA" repeat_region 14797..14951 /note="A+T rich region Rpt 1" D-loop 14848..15722 /note="A+T rich region" repeat_region 14952..15097 /note="A+T rich region Rpt 2" BASE COUNT 7002 a 2293 c 1586 g 4841 t ORIGIN BASE COUNT 444 a 106 c 172 g 592 t 9461 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~aa aauuaauuua 781 uuauuuguuu uuuugauguu uacuuaauuu aaUAAAAA>- ---------- |--------- 841 -ua(auuu)u aauuauu--- -uu------- ---------- ---------- ---------- 901 ---------- ---------- |ugu-cuUA- -GUAU-A(-U UUUA)UUGAA -auaau---- 961 -------<-- -----uuuuu uaauuauauu uucau----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAAU( -GUUA-)AUG ---AAU-ua- 1681 au-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aau ua------uu aauuuaaauu aua------- 1861 ----->auaa guagga---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuauuu 2041 --)------- -----ucu-U UACCUU(UU- GUAUC)AGGG |UUU-AUCAA aa-uu--uu- 2101 aauuu----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- guau->---- --(------) ---------- ---------- ------aaau 2701 uaa--uCUCA AU-UUAGG-U UG-AUCUAUA AAU-AAA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------G-A UA-UUUAUU( GUUUCAU-A) AAUA-UUAU- --UAAUUUA- UUUAUAG-AA 2881 AU(G-AAAU) GUU-AUUC-G U-UUCCUAAU AUAUUU-AGU UUCUU--AAG AA--AA-AAU 2941 (-UUA-)AUU UU-UU-AAAA UUA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< augcuuuuau 3121 uuaa-----( uuuu-)uuag uauaaag--- ---------- ---------- ---------- 3181 ----uau--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UA-A -UUUA--UUA AUUUU--UU- AG-GG(-GAU 3481 AAG)CUCUAA AA-AU----u aau---(--- ----)----- --aac-c--u -auaauu--- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ----uauuaa uugaaauauu ua>AUAAU-A AGC(UUAGUA 3781 CC-A)-GCUA -Uuu-|u(u- -u)-|GAUUA C(--GUUAUA )GU|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------aau uauu--uua| g--g-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -g-----uuu aUUAA-GA|- UG-AUGAAUu u--------- 4501 ---------- ---------- (aauuu-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------aa| agUUUUUGUA AUAAUGA-UG 4681 GA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---auu 5701 auuuuguuuu auuuuauuuu a--------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---uaga-a -----UUUAU -UAUA-AGGA ACUAGGCAAU ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a uAAAUUUC|C GC---CUG-U UU(AUCAA)A AA-CAUG-UC 6841 UUC---|--- ---------- ---------- (-uugauaau auuuu-)--- ---------- 6901 ---------- ----GAAGUC UAACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-CU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu aau)------ ---------- ---------| 7141 ----UUA-AA G-|GG-U|-C -GCGGU-(AU -UAUG)ACUG UG|C(AAA)u GG-UACCAUA 7201 AUC-AU-U-A |GUUUCU(-U AAUU-)GGGG AC|UG-GAAU GAAUGGUUGG A-CGAGAAAU 7261 UU-------- ---------- -------ACU GUCUCUUAAU AAUA-UU-UU ----UAGAAU 7321 UU|A|ACUUU UA-AG(U-UA AAAGG)CUUA AAU----AUU UCUUG-GGAC GAGAAG-ACC 7381 CUAUAG-|-A GCUUU--ACA UU|--U-auu aa---auu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -------aau uuuua-uu(a 7561 ua-u)aguuu aauuuu---- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -aaug-u-ua -auuuuU-AU GUUUUGUUG( 8161 GGG)UG-AC- A|UGAAGA(- --------AU AAU-UAAAC- )UCUU-CA|U |u|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------a u-----aaa( ucauuaa--- )uuuau---g u--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------uu 8881 a|------uu UGAUC-Caua ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au u-)--|---u 9001 guGAUUAUA- |AGA-UUAAG UUACCU|UAG G|GAUAACAG |C-GUA-A-U CAUUUUUUAG 9061 AG(U--UCUU )AUCGGUAAA --AUGGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAU| 9121 UA-AUUAUUG GG-UG(--UA -GU)AGCUCA AU-A-AUU|A -GUC(UGUUC )GACCU-UUA 9181 A--AUUCUU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU GA)GCCAGGU CGGUUUCUAU 9241 CC|UAAGA-- --|-|<---- ---------- ---------- ---------- --auaaguau 9301 >--------- ---------- ---uAUU-AU AU--(UAGU- AC(-CAAA)G GACC-)AUAU 9361 A--AUa<--- ---------- ---------- -------->- aaaa------ ---------- 9421 -|-------- (uau--)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ------uuuu uauu------ ---------- ---------- 9601 ---------- -----uauug (auuaaa-au -----)u-aa -ua------- -uuu~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.mig.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Locusta migratoria. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Locusta migratoria. ORGANISM Mitochondria Locusta migratoria. REFERENCE 1 (bases 1 to 15363) AUTHORS Uhlenbusch,I., McCracken,A. and Gellissen,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X05287 LOCUS LMIMTLM16 1372 bp ds-DNA ORG 30-SEP-1988 DEFINITION Locusta migratoria mitochondrial gene for 16S rRNA. ACCESSION X05287 KEYWORDS 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Val. SOURCE Mitochondrion Locusta migratoria. ORGANISM Mitochondrion Locusta migratoria Eukaryota; Metazoa; Arthropoda; Acrididae. REFERENCE 1 (bases 1 to 1372; enum. 1 to 1372) AUTHORS Uhlenbusch,I., McCracken,A. and Gellissen,G. TITLE The gene for the large (16S) ribosomal RNA from the Locusta migratoria mitochondrial genome JOURNAL Curr Gen 11, 631-638 (1987) STANDARD simple automatic FEATURES from to/span description tRNA < 1 37 tRNA-Leu (CUN) rRNA 38 1351 16S rRNA tRNA 1352 > 1372 tRNA-Val BASE COUNT 461 a 114 c 184 g 613 t ORIGIN This sequence has two changes relative to the .old sequence. It now has a G @ e.coli position 1933, and a G at e.coli postion 2659. BASE COUNT 444 a 104 c 174 g 592 t 9461 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~aa aauuaauuua 781 uuauuuguuu uuuugauguu uacuuaauuu aaUAAAAA>- ---------- |--------- 841 -ua(auuu)u aauuauu--- -uu------- ---------- ---------- ---------- 901 ---------- ---------- |ugu-cuUA- -GUAU-A(-U UUUA)UUGAA -Auaau---- 961 -------<-- -----uuuuu uaauuauauu uucau----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAAU( -GUUA-)AUG ---AAU-ua- 1681 au-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aau ua------uu aauuuaaauu aua------- 1861 ----->auaa guagga---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuauuu 2041 --)------- -----ucu-U UACCUU(UU- GUAUC)AGGG |UUU-AUCAA aa-uu--uu- 2101 aauuu----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- guau->---- --(------) ---------- ---------- ------aaau 2701 uaa--uCUCA AU-UUAGG-U UG-AUCUAUA AAU-AAA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------G-A UA-UUUAUU( GUUUCAU-A) AAUA-UUAU- --UAAUUUA- UUUAUAG-AA 2881 AU(G-AAAU) GUU-AUUC-G U-UUCCUAAU AUAUUU-AGU UUCUU--AAG AA--AA-AAU 2941 (-UUA-)AUU UU-UU-AAAA UUA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< augcuuuuau 3121 uuaa-----( uuuu-)uuag uauaaag--- ---------- ---------- ---------- 3181 ----uau--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UA-A -UUUA--UUA AUUUU--UU- AG-GG(-GAU 3481 AAG)CUCUAA AA-AU----u aau---(--- ----)----- --aac-c--u -auaauu--- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ----uauuaa uugaaauauu ua>AUAAU-A AGC(UUAGUA 3781 CC-A)-GCUA -Uuu-|u(u- -u)-|GAUUA C(--GUUAUA )GU|-UCA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------aau uauu--uua| g--g-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -g-----uuu aUUAA-GA|- UG-AUGAAUu u--------- 4501 ---------- ---------- (aauuu-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------aa| agUUUUUGUA AUAAUGA-UG 4681 GA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---auu 5701 auuuuguuuu auuuuauuuu a--------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---uaga-a -----UUUAU -UAUA-AGGA ACUAGGCAAU ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a uAAAUUUC|C GC---CUG-U UU(AUCAA)A AA-CAUG-UC 6841 UUC---|--- ---------- ---------- (-uugauaau auuuu-)--- ---------- 6901 ---------- ----GAAGUC UAACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-CU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu aau)------ ---------- ---------| 7141 ----UUA-AA G-|GG-U|-C -GCGGU-(AU -UAUG)ACUG UG|C(AAA)u GG-UAGCAUA 7201 AUC-AU-U-A |GUUUCU(-U AAUU-)GGGG AC|UG-GAAU GAAUGGUUGG A-CGAGAAAU 7261 UU-------- ---------- -------ACU GUCUCUUAAU AAUA-UU-UU ----UAGAAU 7321 UU|A|ACUUU UA-AG(U-UA AAAGG)CUUA AAU----AUU UCUUG-GGAC GAGAAG-ACC 7381 CUAUAG-|-A GCUUU--ACA UU|--U-auu aa---auu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -------aau uuuua-uu(a 7561 ua-u)aguuu aauuuu---- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -aaug-u-ua -auuuuU-AU GUUUUGUUG( 8161 GGG)UG-AC- A|UGAAGA(- --------AU AAU-UAAAC- )UCUU-CA|U |u|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------a u-----aaa( ucauuaa--- )uuuau---g u--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- --------uu 8881 a|------uu UGAUC-Caua ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au u-)--|---u 9001 guGAUUAUA- |AGA-UUAAG UUACCU|UAG G|GAUAACAG |C-GUA-A-U CAUUUUUUAG 9061 AG(U--UCUU )AUCGGUAAA --AUGGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAU| 9121 UA-AUUAUUG GG-UG(--UA -GU)AGCUCA AU-A-AUU|A -GUC(UGUUC )GACCU-UUA 9181 A--AUUCUU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU GA)GCCAGGU CGGUUUCUAU 9241 CC|UAAGA-- --|-|<---- ---------- ---------- ---------- --auaaguau 9301 >--------- ---------- ---uAUU-AU AU--(UAGU- AC(-GAAA)G GACC-)AUAU 9361 A--AUa<--- ---------- ---------- -------->- aaaa------ ---------- 9421 -|-------- (uau--)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ------uuuu uauu------ ---------- ---------- 9601 ---------- -----uauug (auuaaa-au -----)u-aa -ua------- -uuu~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.mel.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Apis mellifera. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Apis mellifera. ORGANISM Mitochondria Apis mellifera. REFERENCE 1 (bases 1 to 15363) AUTHORS Vlasak,I., Burgschwaiger,S. and Kreil,G. TITLE Nucleotide sequence of the large ribosomal RNA of honeybee mitochond JOURNAL Nucleic Acids Res. 15, 2388 (1987) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X05011 Phylo:Mitochondria,Animal,Insect, BASE COUNT 512 a 68 c 136 g 545 t 9514 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~aaaag>- ---------- |--------- 841 -uu(uaua)a gg-------- ---------- ---------- ---------- ---------- 901 ----auu-uu auuuagg--- |-UU-AAAU- ---UA-A(-U UAUU)UUNAA -A-UAA---- 961 -------<-- -----uuuaa aauuuuauag uuuaa----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAAU( -GUAA-)AUn ---AAA-au- 1681 uu-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua------un a--------- ---------- 1861 ----->aaaa guagaa---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---uaauuu 2041 --)------- -----uuu-G UACCUU(UU- GUAUC)AGGG |UUG-AUUAA AA-uu--ua- 2101 uuuaa----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------u gauu->---- --(------) ---------- ---------- ------uuaa 2701 aua--uCUCC AA-AAAUA-A GGnAGCUAAA UUU-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------u-A UU-UUUUUU( GUAGCAA-U) AAAA-UUAU- --AAAUAUA- GAUUUAG-AA 2881 AU(U-AAAU) GUU-AAACnA A-CUUAUUA- AUAUCU-AGU UUUUU--UAn AA-AUA-AAU 2941 (-UUA-)AUU UA-GA-UAUA AUU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- ------au(- --------)< uuuaguaaau 3121 uaaa(((((( uuuuau)uuu aauuuau--- ---------- ---------- ---------- 3181 ----uaau-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAUA--UUA AAAAU--UU- AU-GG(-G-U 3481 AAU)CUAUAA AU-UU----a aga---(--- ----)----- --uaa-a--a -auu-uaa-- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- -------uuu uaauuuuuaa ug>uuauA-G AGA(UAAUAU 3781 UU-U)-UCUU -Aauu|-(uu aa)u|aauuu a(--auaauu )ua|-aua-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -----uuaaa uuua--uau| u--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- -------uuu -u-----ucu aUAAA-AA|- UU-UAUAUUu u--a------ 4501 ---------- ---------- (-auua-a)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------ua| aaAUAUAGAA AUAAUGA-UU 4681 AG|AUUAGUA -AU------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---aaa 5701 guuauauuuu auaaugauau u--------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |----uug-u auuauAUAAU -UUAA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u aUAUUAUU|C AC---CUG-U UU(AUCAA)A -A-CAUG-UC 6841 CUG---|--- ---------- ---------- (-uugauuau aauuu-)--- ---------- 6901 ---------- ----UAGGUC GAU-CU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uau)------ ---------- ---------| 7141 ---UUUA-AA U-|AG-C|-U -GCAGU-(AU -GUUG)ACUG UA|C(AAA)- GG-UAGCAUA 7201 AUA-AA-U-U |GUCUUU(-U AAUU-)GAAG AA|UU-GUAU GAAAGAAUUA A-UGAAAUAA 7261 UA-------- ---------- -------ACU GUCUCUAAAU UAU--ua-a- ----AUGAAU 7321 UU|A|AAUUU UU-AG(U-UA AAAUU)CUAA AAU----UUA AUUAUGGGAC GAUAAG-ACC 7381 CUAUAG-|-A AUUUA--AUU UA|--a-uuu uua--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuuauu uauaauuuua auaaauaua- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uuu---aa -gau--U-AA AUUUGAUUG( 8161 GGA)GG-AU- U|GGUAAA(- --------UU UAA-UAAAC- )UUUA-UU|U |a|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 --------ag auuuaauuu( -ugauau--- )aaagauaau u--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -|------uu UGAAU-Uaua ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa u-)--|---u 9001 guAAUUAAA- |AGA-AUAAA UUACCU|UAG G|GAUAACAG |C-GUA-A-U AUCUUUUGAU 9061 AG(A--CCAU )AUAGAUAAA --GAUGUUUG CG-ACCUCGA UGUU|GA--A U|U|AAGAU| 9121 GA-AA-AUUA GG-CG(--CA -GU)AGUUAA AGUU-UUU|A AGUC(UGUUC )GACUU-UUA 9181 A--AAUCUU- --ACAUGAUU UGAGUUCAAA UC|GA-C(GU AA)GUCAGAU UGGUUUCUAU 9241 CU|AUAAU-- --|-|<---- ---------- ---------- ---------- ----aaaaua 9301 >--------- ---------- ---uUAA-UU AA--(UUGU- AC(-GAAA)G GACU-)UUAA 9361 U--UUu<--- ---------- ---------- -------->- uaaa------ ---------- 9421 -|-------- (uua--)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ------uuua -uaaau---- ---------- ---------- 9601 ---------- -----uaaua (auaaau-a- -----)u-au -uau------ -guaa~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.mel.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Apis mellifera. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Apis mellifera. ORGANISM Mitochondria Apis mellifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L06178,S51650 LOCUS S121689 16343 bp DNA Circular INV 23-FEB-1993 DEFINITION tRNA-Glu...rRNA small subunit [Apis mellifera=honeybees, ligustica, Mitochondrial Complete, 37 genes, 16343 nt] ACCESSION S51650 L06178 KEYWORDS . SOURCE honeybees ligustica ORGANISM Mitochondrion Apis mellifera Unclassified. REFERENCE 1 (bases 1 to 16343) AUTHORS Crozier,R.H. and Crozier,Y.C. TITLE The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. JOURNAL Genetics 133, 97-117 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 121689] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 3. FEATURES Location/Qualifiers tRNA 1..66 /note="Description: tRNA-Glu" tRNA 116..178 /note="Description: tRNA-Ser" tRNA 221..286 /note="Description: tRNA-Met" tRNA 296..358 /note="Description: tRNA-Gln" tRNA 360..429 /note="Description: tRNA-Ala" tRNA 433..501 /note="Description: tRNA Ile" tRNA 1503..1571 /note="Description: tRNA-Cys" tRNA 1592..1659 /note="Description: tRNA-Tyr" tRNA 1722..1793 /note="Description: tRNA-Trp" tRNA 3354..3424 /note="Description: tRNA-Leu" tRNA 4294..4362 /note="Description: tRNA-Asp" tRNA 4370..4438 /note="Description: tRNA-Lys" tRNA 6119..6184 /note="Description: tRNA-Gly" tRNA 6572..6638 /note="Description: tRNA-Arg" tRNA 6734..6802 /note="Description: tRNA-Asn" tRNA 6810..6878 /note="Description: tRNA-Phe" tRNA 8557..8624 /note="Description: tRNA-His" tRNA 10267..10344 /note="Description: tRNA-Thr" tRNA 10365..10432 /note="Description: tRNA-Pro" tRNA 12201..12267 /note="Description: tRNA-Ser" tRNA 13220..13290 /note="Description: tRNA-Leu" tRNA 14662..14731 /note="Description: tRNA-Val" rRNA 13291..14661 /note="Description: rRNA large subunit" rRNA 14732..15517 /note="Description: rRNA small subunit" CDS 502..1503 /note="Authors indicate ATC start codon. ND2; For the protein sequence (NCBI gibbsq 121690): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 2" /codon_start=1 /translation="IFFMNFKYHWFIYFLITIFVLMMNSNNIFIQWMLMEFGTIISIS LINIKSTNKTPSLIYYSVSVISSIFLFFMIIVYLSSISFTKTDTFNFMVQMMFFLKIG TFPFHFWMIYSYEMMNWKQIFLMSTLIKFIPIYMMVSMTKINSWTLYFLITNSLYISF YANKFYTLKKLLACSTIFNSFYFIFILELNKNMFIAMIILYSFNYFLLISFLNKFNIQ NFNFMFYNKYQMYTFLTLMFNYSMYPIFLSFVIKWNLIFMMVSVKAYNWILFLLMISS MLMIWNYIIILKRVFLKMNFYKNNFIDDKDNKYMYHSYFALTLLSFNISFFITLNFL" CDS 1794..3353 /note="Authors indicate TTT stop codon. COI; For the protein sequence (NCBI gibbsq 121691): Method: conceptual translation supplied by author. This sequence comes from Fig. 3. Author-given protein sequence differs from the conceptual translation for reasons explained in citation" /product="cytochrome oxidase I" /codon_start=1 /translation="MMKWFMSTNHKNIGILYIILALWSGMLGSSMSLIIRMELSSPGS WISNDQIYNTIVTSHAFLMIFFMVMPFLIGGFGNWLIPLMLGSPDMAFPRMNNISFWL LPPSLFMLLLSNLFYPSPGTGWTVYPPLSAYLYHSSPSVDFAIFSLHMSGISSIMGSL NLMVTIMMMKNFSMNYDQISLFPWSVFITAILLIMSLPVLAGAITMLLFDRNFNTSFF DPMGGGDPILYQHLFWFFGHPEVYILILPGFGLISHIVMNESGKKEIFGNLSMIYAML GIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAVPTGIKVFSWLATYHGSKLKLNI SILWSLGFIMLFTIGGLTGIMLSNSSIDIILHDTYYVVGHFHYVLSMGAVFAIISSFI HWYPLITGLLLNIKWLKIQFIMMFIGVNLTFFPQHFLGLMSMPRRYSDYPDSYYCWNS ISSMGSMISLNSMIFLIFIILESLISKRMLLFKFNQSSLEWLNFLPPLDHSHLEIPLL IKNLNLKSILIK" CDS 3618..4295 /note="Authors indicate ATT start codon. COII; For the protein sequence (NCBI gibbsq 121692): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="cytochrome oxidase II" /codon_start=1 /translation="ISTWFMFMFQESNSYYADNLISFHNMVMMIIIMISTLTVYIILD LFMNKFSNLFLLKNHNIEIIWTIIPIIILLIICFPSLKILYLIDEIVNPFFSIKSIGH QWYWSYEYPEFNNIEFDSYMLNYNNLNQFRLLETDNRMVIPMKIPLRLITTSTDVIHS WTVPSLGIKVDAVPGRINQLNLISKRPGIFFGQCSEICGMNHSFMPIMIESTSFQYFL NWVNKQI" CDS 4444..4602 /note="Authors indicate ATT start codon. For the protein sequence (NCBI gibbsq 121693): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="ATPase8" /codon_start=1 /translation="IPQMMPMKWFLIYFIYLLIFYLFIMLINSMLIKTKINKETLKIK LKKWNWFW" CDS 4584..5264 /note="For the protein sequence (NCBI gibbsq 121694): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="ATPase6" /codon_start=1 /translation="MKLILMMNLFEMFDPSTSNNLSMNWLFMMLPIIIFPSIFWLIQS RIMFIMKTLMNFMYNEFKVVSKSKYQSNIIIFISLMLYIMITNIFSLIPYVFTLTSHL LLNMILSLTLWFSFLIYLIYNNYIMFLSHLVPLNSPVFLMNFMVIIELISLIIRPWTL SIRLSANLISGHLILTLLGIFISNFISILPINLMIQNMLLTLEIFMSMIQSYVFSILL ILYFSESN" CDS 5285..6064 /note="COIII; For the protein sequence (NCBI gibbsq 121696): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="cytochrome oxidase III" /codon_start=1 /translation="MKKNFPFHMVTNSPWPIILSFSFMNTLISTVIWIYSSISMFMIL NFINSILIMMLWFRDIIRESTFQGMHSMFITNFLKFSMILFILSELMFFISFFWTFFH SSISPNIEINMTWPPKNIKFFNPMEIPLLNSFILVSSGFTVTLSHYYLIINNLKLSKS YLLLTILLGIYFTILQTIEYSNSFFCFNDSIYGSIFFMATGFHGLHVLIGSIFLLISL YRMMNIHFSNMHNMNFELAIWYWHFVDVIWLFLYTFIYLLI" CDS 6185..6538 /note="ND3; For the protein sequence (NCBI gibbsq 121697): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 3" /codon_start=1 /translation="MKFIFMYFIFIILISSILLLLNKFISIYKKKDYEKSSPFECGFN PITKANLPFSLPFFLMTMMFLIFDVEIILFLPIIFYLKSSSTMISYLMISIFLILLIT TLILEWMNNYLNWLF" CDS complement(6892..8556) /note="Authors indicate ATT start codon. ND5; For the protein sequence (NCBI gibbsq 121698): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 5" /codon_start=1 /translation="IIKMMVCGILLFEFSFLMMLMSLYLLYLNKEFFFEWNIYTFNSM KFNFLLLIDYKSLMFIFLVSMIFSMIIIYSISYMDLSELKMDRFLYLMILFLISMYML ILSPNMLSIILGWDGLGLISYCLVIYYMKMKSFTSGMVTILLNRLGDIGLLLIMGLMT YYGSWNLSFYKMNEFMMIYILLMAFTKSAQIPFSTWLPMAMMAPTPVSSLVHSSTLVT AGIYLLIRYVNLLDFNYKNYIMLIASLTMLFAGLVANFELDLKKVVAYSTLSQLGFMM SMLSIGSTELVFLHLFIHAMFKSLMFMCVGSYMHYMYSNQDIRMYYGMYYIYPMKSMI LIFSILSLCGFPFLVGYYSKDLIIEMFFFSKMIYFSMINLIIGTIFTVSYSFRMILVL TSKFLMMNVIYSKEDKIMCISMMMMMIFSLIYSKLIFNLMNFNLLGINLLMIYKLMVF KMIMVGLIMGFNFYKLILLNNKIGYFKMSFLFMNLIYKIIYKKIIMMMFTYEVYIEKS IIEILSSKFMSVTLNIYELKISNLMINIYLTILIYLIYLLIYLINF" CDS complement(8644..9987) /note="NAD4; For the protein sequence (NCBI gibbsq 121701): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 4" /codon_start=1 /translation="MYLLLLLIMLNMLMMSMIYLFMLFMNKMKNNLNLIIGNLIIINL LLNLFNLNWIDWIYIFCNLSFNMYSYGLIMLTLWIFGLIFISLNNNSLNCLFMNLLLM ISLLLVFLSMNLLLFYLFYEFGLLLIFYLVVKWGYSENRWLSGFYLMFYTMIFSLPML YIIYYIYLIDYSLNFMLMEMLNLNLNMMLFIYLLMSFLVKIPIYLFHGWLLKAHVEAP YYGSMILASIMLKLGGYGMLRLMIIYKNEFILIQKILVMINSFGVLILSLMCLSQFDM KSIIAISSIVHMGLMIMSMMTFLKISLIGGYLMMISHGLSSSGLFFLVNVIYSQTNSR LMFINKGMINFMPSMSLLWFMLCSSNMGSPVSLNLISEVMLLIGMISWLKFMMLILMM YCLFSFIYSIYLFMFINHGKIFIMFKIKNGILVEYFVLLLHWIPLNLMFLKLYFI" CDS complement(9991..10254) /note="Authors indicate ATT start codon. ND4L; For the protein sequence (NCBI gibbsq 121702): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 4L" /codon_start=1 /translation="IKLLFVMMLLFFMFLWYYNVNFLSFLILMEFLVITVLFFIIGYE INSWLFLIFLVFSVCELVLGLSLLVSMNYELGHQKLSVMDLIY" CDS 10441..10944 /note="Authors indicate ATT start codon. ND6; For the protein sequence (NCBI gibbsq 121703): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 6" /codon_start=1 /translation="IMLTIIMLSKIFMSSLISMILTIYLNNIFNSPSMLLIYLISYSI YMSLMMFTMCSMNSLLILMILIVFLSGMLIMFSYFISLINEPLKLKMKPFIQTLFLII ITMKIYNKLSQNEHYFNYFKNIDLMYLYMKMNSTLFFIMILMLIITLILMTKITYIEK KTLRKKK" CDS 11004..12155 /note="Cyt b; For the protein sequence (NCBI gibbsq 121704): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="cytochrome b" /codon_start=1 /translation="MKKFMNFFSSNEFLKMIMSTIYLPTPVNINYMWNFGSILGIFLM IQIISGFILSMHYCPNIDIAFWSITNIMKDMNSGWLFRLIHMNGASFYFLMMYIHISR NLFYCSYKLNNVWGIGIMILLMSMAAAFMGYVLPWGQMSYWGATVITNLLSAIPYIGD TIVLWIWGGFSINNATLNRFFSLHFILPLLILFMVILHLFALHLTGSSNPLGSNFNNY KISFHPYFSIKDLLGFYIILFIFMFINFQFPYHLGDPDNFKIANPMNTPTHIKPEWYF LFAYSILRAIPNKLGGVIGLVMSILILYIMIFYNNKMMNNKFNMLNKIYYWMFINNFI LLTWLGKQLIEYPFTNINMLFTTTYFLYFFLNFYLSKLWDNLIWNSPLN" CDS complement(12302..13219) /note="Authors indicate ATT start codon. ND1; For the protein sequence (NCBI gibbsq 121705): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 1" /codon_start=1 /translation="IWVLINLLILMIMVLISVAFLTLLERKILGYIQDRKGPNKIMLF GMFQPFSDALKLLSKEWFFFNYSNLFIYSPMLMFFLSLVMWILYPWFGFMYYIEFSIL FMLLVLGLSVYPVLFVGWISNCNYAILGSMRLVSTMISFEINLFFLVFSLMMMVESFS FNEFFFFQNNIKFAILLYPLYLMMFTSMLIELNRTPFDLIEGESELVSGFNIEYHSSM FVLIFLSEYMNIMFMSVILSLMFYGFKYWSIKFILIYLFHICLIIWIRGILPRIRYDK LMNMCWTEMLMLVMIYLMYLYFMKEFLCI" BASE COUNT 7061 a 1570 c 905 g 6807 t ORIGIN BASE COUNT 555 a 66 c 146 g 605 t 9403 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~uaauuaaaa 721 uuauuaauaa aauuauuugg uuauauuuau auauauauau auauauauau auauauauau 781 auauauuaau aauaauaauu uauuuuuuuu uuuaaaag>- ---------- |--------- 841 -uu(uaua)a ag-------- ---------- ---------- ---------- ---------- 901 ----auu-uu auuuagg--- |-UU-AAAU- ---UA-A(-U UAUU)UUGAA -A-UAA---- 961 -------<-- -----uuuaa aauuuuauag uuuaa----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---AGUAAU( -GUAA-)AUG ---AAA-au- 1681 uu-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ug------ug a--------- ---------- 1861 ----->aaaa guagaa---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---uaauuu 2041 --)------- -----uuu-G UACCUU(UU- GUAUC)AGGG |UUG-AUUaa aa-uu--ua- 2101 uuuaa----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------u gauu->---- --(------) ---------- ---------- ------uuaa 2701 aua--uCUCG AA-AAUAA-G GG-AGCUAAA UUU-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------u-A UU-UUUUUU( GUAGCAA-U) AAAA-UUAU- --AAAUAUA- GAUUUAG-AA 2881 AU(U-AAAU) GUU-AAAC-G A-ACUUAUUA AUAUCU-AGU UUUUU--UAG AA-AUA-AAU 2941 (-UUA-)AUU UA-GA-UAUA AUU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- ------au(- --------)< uuuaguaaau 3121 uaaa(((((( uuuuau)uuu aauuuau--- ---------- ---------- ---------- 3181 ----uaau-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAUA--UUA AAAAU--UU- AU-GG(-GAU 3481 AAU)CUAUAA AU-UU----a aga---(--- ----)----- --uaa-a--a -auu-uaa-- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- -------uuu uaauuuuuaa ug>uuauA-G AGA(UAAUAU 3781 UU-U)-UCUU -Uaau|u(uu aa)u|aauuu a(--auaauu )ua|-aua-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -----uuaaa uuua--uau| u--u-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- -------uuu -u-----ucu aUAAA-AA|- UU-UAUAUUu u--a------ 4501 ---------- ---------- (-auua-a)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------ua| aaAUAUAGAA AUAGUGA-UU 4681 AG|AUUAGUA -AU------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---aaa 5701 guuauauuuu auaaugauau u--------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |----uug-u auuauAUAAU -UUAA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u aUAUUAUU|C AC---CUG-U UU(AUCAA)A AA-CAUG-UC 6841 CUG---|--- ---------- ---------- (-uugauuau aauuu-)--- ---------- 6901 ---------- ----UAGGUC GAU-CU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uau)------ ---------- ---------| 7141 ---UUUA-AA U-|AG-C|-U -GCAGU-(AU -GUUG)ACUG UA|C(AAA)- GG-UAGCAUA 7201 AUA-AA-U-U |GUCUUU(-U AAUU-)GAAG AA|UU-GUAU GAAAGAAUUA A-UGAAAUAA 7261 UA-------- ---------- -------ACU GUCUCUAAAU UAU--ua-a- ----AUGAAU 7321 UU|A|AAUUU UU-AG(U-UA AAAUU)CUAA AAU----UUA AUUAUGGGAC GAUAAG-ACC 7381 CUAUAG-|-A AUUUA--AUU UA|--a-uuu uua--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuuauu uauaauuuua auaaa-uaua 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uuu---aa -gau--U-AA AUUUGAUUG( 8161 GGA)GG-AU- U|GGUAAA(- --------UU UAA-UAAAC- )UUUA-UU|U |a|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 --------ag auuuaauuu( -ugauau--- )aaagauaau uu-------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -|------uu UGAAU-uaua ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa u-)--|---u 9001 guaAUUAAA- |AGA-AUAAA UUACCU|UAG G|GAUAACAG |C-GUA-A-U AUCUUUUGAU 9061 AG(A--UCAU )AUAGAUAAA --GAUGUUUG CG-ACCUCGA UGUU|GA--A U|U|AAGAU| 9121 GA-AA-AUUA GG-CG(--CA -GU)AGUUUA AGUU-UUU|A AGUC(UGUUC )GACUU-UUA 9181 A--AAUCUU- --ACAUGAUU UGAGUUCAAA UC|GA-C(GU AA)GUCAGAU UGGUUUCUAU 9241 CU|AUAAU-- --|-|<---- ---------- ---------- ---------- ----aaaaua 9301 >--------- ---------- ---uUAA-UU AA--(UUGU- AC(-GAAA)G GACU-)UUAA 9361 U--UUu<--- ---------- ---------- -------->- uaaa------ ---------- 9421 -|-------- (uua--)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- ------uuua -uaaau---- ---------- ---------- 9601 ---------- -----uaaua (auaaau-a- -----)u-au -uau------ -auag~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.garma 10775 bp RNA RNA 24-JAN-1996 DEFINITION Mitochondria Ropronia garmani. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Ropronia garmani. ORGANISM Mitochondria Ropronia garmani. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U06968 BASE COUNT 205 a 27 c 42 g 188 t 10313 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~cu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------aau uaa)------ ---------- ---------| 7141 ---AUUA-AA U-|AG-C|-U -GCAAU-(AU -UUUA)AUUG UA|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUUUUU(-U AAUU-)GAAA AC|UU-GUAU GAAAGAUUGA A-UGAAAUAU 7261 UA-------- ---------- -------ACU GUCUCAaaau uaau-uaa-- ----auaaau 7321 uu|a|AUAUU UA-AG(U-UA AAAAU)CUUA AAU----AAU UAAAAUAGAC GAUAAG-ACC 7381 CUAUAG-|-A AUUUA--AAU UA|-uu-uua aau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-auuuau uuuuaauuua aaauaauuaa 7561 au-------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-u-uu -aua--U-AA UUUUAAUUG( 8161 GGG)GG-AU- U|AUAAAA(- --------UU AAA-AAAAC- )UUUU-AU|U |--------- 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- ---------- ---------- 8761 ---------- -uuuaaaaa( --cauaaa-- )uu-u-auga a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -aauuuuuaa UGAAU-UAU- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------uuau u-)--|---- 9001 AUAAUUAUA- |AGA-AUAAA UUACCU|UAG G|GAUAACAG |C-AUA-A-U UUUUUUUUAU 9061 AG(U--UCAU )AUUGAAAAA --AAAGUUUA UG-ACCUCGA UGUU|GA--A U|U|AAAAU| 9121 UA-AU-UUUU AA-UG(--AA -AA)UAUUAA AAAA-UU~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.termi 10775 bp RNA RNA 24-JAN-1996 DEFINITION Orussus terminalis. ACCESSION No information KEYWORDS No information. SOURCE Orussus terminalis. ORGANISM Orussus terminalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U06956 BASE COUNT 176 a 43 c 73 g 163 t 10320 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~cu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-UU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- gaa)------ ---------- ---------| 7141 ---AUUU-AA A-|GG-C|-U -GCAGU-(AA -ACUG)ACUG CA|C(AAA)- GG-UAGCAUA 7201 AUC-AA-U-A |GUUUCU(-U AAUU-)GGAA GC|UU-GUAU GAAGGAUUGA A-CGAGAUAA 7261 CU-------- ---------- -------ACU UUCUAAAAAU AAUU-guaug ----augaaU 7321 UU|A|AUCUU UA-GA(U-UA AAAAG)UCUA AAU----AAU AUUAAUAGAC GAUAAG-ACC 7381 CUAUAG-|-A AUUUU--AUA AU|------- ---------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uauauu gauuugauua ugagauaaac 7561 uuugauuaaa uaaguauu-- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------- ------A-UU AUUUUGUUG( 8161 GGG)AG-AU- A|UUAAGA(- --------UU AAA-AUAAC- )UCUU-AA|u |u|uuu--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- ---------- ---------- 8761 ---------a uaau--caa( -uaauuu--- )uu-g-auaa aaga------ ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- UGAUC-CUGU ---------- ---------- ---(------ ---------- 8941 --------au ---------- ---------- ---------- ---------- u-)--|---A 9001 CAGa-auua- |AGA-ACAAA UUACCU|UAG G|GAUAACAG |C-GUA-A-U UCUUUUUGAA 9061 AG(U--UCAU )AUUAAUAAA --AGAGGUUG CG-ACCUCGA UGUU|GA--A U|U|AAGAU| 9121 AA-AU-UUAA GG-UG(--UA -GG)AGCUUA UAUA-UU~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.I.promi 10775 bp RNA RNA 24-JAN-1996 DEFINITION Mitochondria Ichneumon promissorius. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Ichneumon promissorius. ORGANISM Mitochondria Ichneumon promissorius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U06960 BASE COUNT 172 a 30 c 61 g 178 t 10334 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~cu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------uau aua)------ ---------- ---------| 7141 ---UUUA-AA U-|AG-C|-U -GCGGU-(AU -AUUA)ACCG UA|C(AAA)- GG-UAGCAUA 7201 AUC-AA-U-A |GUUUUU(-U AAUU-)GAAA GC|UG-GAAU GAAUGAUUUG A-UGAAAUGA 7261 AU-------- ---------- -------UUU GUCUCAAAUU UAUu-aauau ----uagaau 7321 uu|u|uu-uU UU-AG(U-AA AAAUA)CUAA UUU----UUU UUUAAAAGAC GAGAAG-ACC 7381 CUAUAG-|-A UUUUU-uAUA AU|--u-ugu uuu--uu--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuaaa- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --aaa-a-aa -caauaAAUU AUUUGGUUG( 8161 GGG)AA-AU- U|AUUAAA(- --------UU AAU-UAAAU- )UUUA-AU|U |U|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- ---------- ---------- 8761 ---------- uuuu--aaa( -caauga--- )uu-u-uuga u--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------ua UGAUC-uuga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------uuuu u-)--|---u 9001 gggauuaaaa |AGA-AUAAA AUACCU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUAGAG 9061 AG(A--UCAU )AUUAAUAAA --AAAGUUUG CG-ACCUCGA UGUU|GA--A U|U|AAGAU| 9121 AA-AA-UUUU AA-UG(--AA -GA)AGUUAA AAAU-UU~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.trima 10775 bp RNA RNA 25-JAN-1996 DEFINITION Mitochondria Hartigia trimaculata. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Hartigia trimaculata. ORGANISM Mitochondria Hartigia trimaculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U06955 BASE COUNT 169 a 40 c 70 g 206 t 10290 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~cu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- guu)------ ---------- ---------| 7141 ---UUGA-AA U-|GG-A|-C -GCGGU-(AU UUU-G)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-A |GUUUUU(-U AAUU-)GAAA GC|UU-GUAU GAACGAUUGA A-UAAGAUAC 7261 UA-------- ---------- -------AUU GUCUCAugau uauu-uaaua ----uaaaau 7321 uu|a|auuuU UG-AG(U-UA AAAAG)CUUA AAU----AUU AUUAGAGGAC GAGAAG-ACC 7381 CUAUAG-|-A UUUUU--AUA AA|--a-uaa uua--uu--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuaaua uauuaauuuu auuuuuuuuu 7561 uu-------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --aau-a-cu -uauu-U-UU AUUUUGUUG( 8161 GGG)UG-AC- A|UUAAAA(- --------UU UAA-UUAAC- )UUUU-AA|U |U|u----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- ---------- ---------- 8761 ---------a aauu--aaa( -cauuaa--- )uu-u-auga a--------- ---------- 8821 ---------- ---------- ---------- uuuuuaauaa uuuguuuuua uuauuaa--u 8881 u|------au UGACC-cuga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au u-)--|---u 9001 uagguuauu- |AGA-UUAAA AUACCU|UAG G|GAUAACAG |C-GUA-A-U UUAUUUGGAG 9061 AG(A--UCAU )AUUAAUAAA --UAAGUUUG CG-ACCUCGA UGUU|GA--A U|U|AAGAA| 9121 UA-UA-UUUA GG-UG(--UA -GG)UGCUUA AAUU-CA~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.areol 10775 bp RNA RNA 25-JAN-1996 DEFINITION Mitochondria Disogmus areolator. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Disogmus areolator. ORGANISM Mitochondria Disogmus areolator. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U39953 BASE COUNT 168 a 26 c 49 g 161 t 10371 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~cu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------uaa aau)------ ---------- ---------| 7141 ---AUUA-AA U-|AG-C|-U -GCAGU-(AU AUU-G)ACUG UA|C(AAA)- GG-UAGCAUA 7201 AUC-AA-U-U |GUUUUU(-U AAUU-)GAAA AC|UU-GUAU GAAAGAUUGA A-UGAAAUAU 7261 UA-------- ---------- -------UCU GUUUCAUAAU AAAu-ua--- ----uugaau 7321 uu|a|uauuU UA-GA(U-AA AAAUA)UCUA AAU----UUA AUUAUUAGAC GAUAAG-ACC 7381 CUAUAG-|-A AUUUU--AUU AU|------- ---------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuuuaa uuaauuaaaa uuaaauuaa- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------- ------A-UA AUUUAAUUG( 8161 GGG)GG-AU- A|AAAAAA(- --------UU UUU-AAUUU- )UUUU-aa|u |a|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- ---------- ---------- 8761 -gguuaacaa auau--aau( -ugguaa--- )au-u-au-- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- aGAau-auua ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au u-)--|---u 9001 auagauauu- |AGA-UUAAA UUACCU|UAG G|GAUAACAG |C-AUA-A-U UUUUUUGGAA 9061 AG(U--UCAA )AUUUAUAAA --AAAGAUUA UG-ACCUCGA UGUU|GA--A U|U|A~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Diph.sp 10775 bp RNA RNA 25-JAN-1996 DEFINITION Mitochondria Diphoropria sp.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Diphoropria sp. ORGANISM Mitochondria Diphoropria sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U39952 BASE COUNT 168 a 27 c 47 g 175 t 10358 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~~~ ~(~~~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 6541 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 6601 )~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~)<~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ 6781 ~~~~|~(~~~ )~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 6841 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~cu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------aa uuu)------ ---------- ---------| 7141 ---AUUA-AA U-|AG-C|-U -GCAGU-(AU UUU-G)ACUG UA|C(AAA)- GG-UAGCAUA 7201 AUC-AA-U-U |GUUUUU(-U AAUA-)GGGA UC|UA-GUAU GAAGGAUUUA A-UGAAAUAG 7261 UA-------- ---------- -------ACU GUCUCAuaau aaua-uuuuu -----uuaaU 7321 UU|A|UUUUU UU-UG(U-AA AAAUA)CAAA AAU----UUA AUUAAAAGAC GAUAAG-UCC 7381 CUAUAG-|-A AUUUA--AUA UA|------- ---------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuuauu uauauaaaau uaauuuaaaa 7561 uuuuauauuu auaua----- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------- ------U-AU AUUUUAUUG( 8161 GGG)GU-AU- A|AAAAAA(- --------UU AAA-UUAAU- )UUUU-UU|a |a|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- ---------- ---------- 8761 ---------- aaaa--aau( -cauuua--- )ua-a-a--- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- uGAuu-uuu- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- uuaauuuuua u-)--|---- 9001 aaaaaaauu- |AGA-AUAAA UUACCU|UAG G|GAUAACAG |C-AUA-A-U UUUUUUGGAU 9061 AG(U--UCAU )AUUGAUAAA --AAAGAUUG UG-ACCUCGA UGUU|GA--A U|U|A~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.alb.1 10775 bp RNA RNA ~?~???? DEFINITION Aedes albopictus (mosquito) mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Aedes albopictus (mosquito) mitochondria. ORGANISM Aedes albopictus (mosquito) mitochondria. REFERENCE 1 (bases 1 to 15363) AUTHORS No information JOURNAL 7771-7785(1984) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X01078 Phylo:Mitochondria,Animal,Insect, The N at E.coli poistion 2025 has been replaced with an U. Confirmed via genbank. (-JCC) BASE COUNT 518 a 76 c 152 g 589 t 9440 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ uaaauuuuau 781 uuauuaauuu uauuuauuua aguauuauau uuaauaa->- ---------- |--------- 841 -aa(AUAA)u uuuaauu--- -ca------- ---------- ---------- ---------- 901 ---------- -----gu-au |agu-uuUA- -GUAU-U(-U UUUA)AAGAA -Auaau---- 961 -------<-- -----aauuu uaauaauagu uuauu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---UGUAUU( -GUAA-)AAG ---AAG-AU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua------au uugaaaaauu uuuauuuu-- 1861 ----->aaaa gaaaau---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuaauuu 2041 --)------- -----auu-G UACCUU(GU- GUAUC)AGGG |UUU-AUUaa uu-aau-ua- 2101 auuau----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- uaua->---- --(------) ---------- ---------- ------guaa 2701 uuu-uuCUCG AA-UUUUA-A AG-AUUUAAU UAU-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------a-A AA-GUUAUU( GUGGAAU-A) AUUA-UUUU- --UAAUAUA- UAAUUAG-AA 2881 AU(G-AAAU) GUU-AAUC-G U-UUUAAAAU AUAUCU-AGU UUUUU--AAG AA-AUA-AAU 2941 (-UUA-)AUU UA-GA-UUUA UAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auuaaaagu 3121 auua(((((( uuuauu)uaa uauuuuu--- ---------- ---------- ---------- 3181 ----aau--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-A -UAAA-AUUA AUAUU--UU- AA-GG(-GAU 3481 UAG)CUUUAA AA-UA----a auu---(--- ----)----- --uuu-a-aa -uuuUAA--- 3541 --aaa----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- -aguauuuaa ua>AAUGU-A AGC(UUAAAA 3781 AU-A)-GUUA -UCAU|U(A- AU)-|AAAUU U(--GUUAUA )AU|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|au uaua--aaa| uu-a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --------uu -a-----uuu aUUAA-AA|- UA-UAAAUUu u--------- 4501 ---------- ---------- (aauau-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------aa| ugAUUUAUAA AUUAUGG-UA 4681 AA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---uuu 5701 aauuuauaua aauuauuuaa au-------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---ugag-a g----GUUUA -AAUA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u uAUAUAUU|C AC---CUG-U UU(AUCAA)A AA-CAUG-UC 6841 UUU---|--- ---------- ---------- (-uuguauuu aauuu-)--- ---------- 6901 ---------- ----AAAGUC UAACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G GU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a gau)------ ---------- ---------| 7141 ---AUUA-AA G-|GG-C|-C -GCAGU-(AU -UUUG)ACUG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AG-U-A |GUCUUU(-U AAUU-)GAAG GC|UU-GUAU GAAUGGUUGA A-UGAGAUAU 7261 AU-------- ---------- -------ACU GUCUUUUUUA AAUU-UU-UA ----UAGAAU 7321 UU|U|AUUUU UU-AA(U-UA AAAAG)UUAA AAU----AUA AUUAAAAGAC GAGAAG-ACC 7381 CUAUAG-|-A UCUUU--AUU UU|--U-uuu aau------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uauaag uuaaaaagaa uaauuaaauu 7561 uaua------ ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -guuu-u-au -aa---A-AA AUUUUACUG( 8161 GGG)UG-GU- A|UUAAAA(- --------UU UAA-UUAAC- )UUUU-AU|U |a|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u uugu--uua( -cauuaa--- )ua-u-augu a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------uu UGAUC-Caau ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uu u-)--|---a 9001 uuGAUUAAA- |AAA-UUAAG UUACCU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUUUAG 9061 AG(U--UCUU )AUCGACAAA --AAAGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAA| 9121 UU-AUUUUUA GG-UG(--UA -GA)AGUUUA AA-G-UUU|A GGUC(UGUUC )GACCU-UUG 9181 A--AUUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-C(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUAAU-- --|-|<---- ---------- ---------- ---------- ----aaauua 9301 >--------- ---------- ---uUAU-AU UA--(UAGU- AC(-GAAA)G GACC-)UAAU 9361 A--UAa<--- ---------- ---------- -------->- aaaau----- ---------- 9421 -|-------- (auaa-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- -----auuuu -aaa------ ---------- ---------- 9601 ---------- -----uuuau (gaauu---a uauua)a-ua -uuu------ aauaaa~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.alb.2 10775 bp RNA RNA ~?~???? DEFINITION Mitochondria Aedes albopictus (mosquito). ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Aedes albopictus (mosquito). ORGANISM Mitochondria Aedes albopictus (mosquito). REFERENCE 1 (bases 1 to 15363) AUTHORS No information JOURNAL 7771-7785(1984) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X01078 Phylo:Mitochondria,Animal,Insect, BASE COUNT 518 a 76 c 152 g 588 t 9441 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ uaaauuuuau 781 uuauuaauuu uauuuauuua aguauuauau uuaauaa->- ---------- |--------- 841 -aa(AUAA)u uuuaauu--- -ca------- ---------- ---------- ---------- 901 ---------- -----gu-au |agu-uuUA- -GUAU-U(-U UUUA)AAGAA -Auaau---- 961 -------<-- -----aauuu uaauaauagu uuauu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---UGUAUU( -GUAA-)AAG ---AAG-AU- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<----aaa ua------au uugaaaaauu uuuauuuu-- 1861 ----->aaaa gaaaau---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuaauuu 2041 --)------- -----auu-G UACCUU(GU- GUAUC)AGGG |UUU-AUUaa uu-aau-ua- 2101 auuau----- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- uaua->---- --(------) ---------- ---------- ------guaa 2701 uuu-uuCUCG AA-UUUUA-A AG-AUUUAAU UAU-AUA-U- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------a-A AA-GUUAUU( GUGGAAU-A) AUUA-UUUU- --UAAUAUA- UAAUUAG-AA 2881 AU(G-AAAU) GUU-AAUC-G U-UUUAAAAU AUAUCU-AGU UUUUU--AAG AA-AUA-AAU 2941 (-UUA-)AUU UA-GA-UUUA UAA-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< -auuaaaagu 3121 auua(((((( uuuauu)uaa uauuuuu--- ---------- ---------- ---------- 3181 ----aau--- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-A -UAAA-AUUA AUAUU--UU- AA-GG(-GAU 3481 UAG)CUUUAA AA-UA----a auu---(--- ----)----- --uuu-a-aa -uuuUAA--- 3541 --aaa----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- -aguauuuaa ua>AAUGU-A AGC(UUAAAA 3781 AU-A)-GUUA -UCAU|U(A- AU)-|AAAUU U(--GUUAUA )AU|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|au uaua--aaa| uu-a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --------uu -a-----uuu aUUAA-AA|- UA-UAAAUUu u--------- 4501 ---------- ---------- (aauau-u)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------aa| ugAUUUAUAA AUUAUGG-UA 4681 AA|AUUAGUA -UA------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<---uuu 5701 aauuuauaua aauuauuuaa au-------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ---------- ---------- ---------| 6541 |---ugag-a g----GUUUA -AAUA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u uAUAUAUU|C AC---CUG-U UU(AUCAA)A AA-CAUG-UC 6841 UUU---|--- ---------- ---------- (-uuguauuu aauuu-)--- ---------- 6901 ---------- ----AAAGUC UAACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-CU|G GU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a gau)------ ---------- ---------| 7141 ---AUUA-AA G-|GG-C|-C -GCAGU-(AU -UUUG)ACUG UG|C(GAA)- GG-UAGCAUA 7201 AUC-AG-U-A |GUCUUU(-U AAUU-)GAAG GC|UU-GUAU GAAUGGUUGA A-UGAGAUAU 7261 AU-------- ---------- -------ACU GUCUUUUUUA AAUU-UU-UA ----UAGAAU 7321 UU|U|AUUUU UN-AA(U-UA AAAAG)UUAA AAU----AUA AUUAAAAGAC GAGAAG-ACC 7381 CUAUAG-|-A UCUUU--AUU UU|--U-uuu aau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uaaguu aaaaagaaua auuaaauuua 7561 ua-------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -guuu-u-au -aa---A-AA AUUUUACUG( 8161 GGG)UG-GU- A|UUAAAA(- --------UU UAA-UUAAC- )UUUU-AU|U |a|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- --|------- ---------- 8761 ---------u uugu--uua( -cauuaa--- )ua-u-augu a--------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|------uu UGAUC-Caau ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uu u-)--|---a 9001 uuGAUUAAA- |AAA-UUAAG UUACCU|UAG G|GAUAACAG |C-GUA-A-U UUUUUUUUAG 9061 AG(U--UCUU )AUCGACAAA --AAAGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAGAA| 9121 UU-AUUUUUA GG-UG(--UA -GA)AGUUUA AA-G-UUU|A GGUC(UGUUC )GACCU-UUG 9181 A--AUUCUU- --ACAUGAUC UGAGUUCAAA CC|GG-C(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUAAU-- --|-|<---- ---------- ---------- ---------- ----aaauua 9301 >--------- ---------- ---uUAU-AU UA--(UAGU- AC(-GAAA)G GACC-)UAAU 9361 A--UAa<--- ---------- ---------- -------->- aaaau----- ---------- 9421 -|-------- (auaa-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ---------- ---------- -----auuuu -aaa------ ---------- ---------- 9601 ---------- -----uuuau (gaauu---a uauua)a-ua -uuu------ aauaaa~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (9)-Mollus 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.M.eduli 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mytilus edulis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mytilus edulis. ORGANISM Mitochondrion Mytilus edulis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M83756 LOCUS MSLMTFR1A 5314 bp ds-DNA ORG 09-JUL-1992 DEFINITION Mytilus edulis mitochondrial NADH dehydrogenase subunit 5 (ND5) gene, 3' end; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; and cytochrome b (cyt b), 5' end. ACCESSION M83756 KEYWORDS NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; large subunit ribosomal RNA; small subunit ribosomal RNA; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Phe; transfer RNA-Tyr. SOURCE Mitochondrion Mytilus edulis (chromosome Mitochondrion Mytilus edulis) adult DNA. ORGANISM Mitochondrion Mytilus edulis Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Isofilibranchia; Mytiloida; Mytilaceae; Mytilidae. REFERENCE 1 (bases 1 to 5314) AUTHORS Brown,W.M., Boore,J.L. and Hoffmann,R.J. TITLE A novel mitochondrial genome organization for the blue mussel, Mytilus edulis JOURNAL Genetics 131, 397-412 (1992) STANDARD full staff_review FEATURES Location/Qualifiers CDS <1..245 /product="NADH dehydrogenase subunit 5" /gene="ND5" /note="putative" /codon_start=1 /translation="EDVVYRKFNFSSWEGVFFKGSRTVAQSLDQGWLELLGPQGVHAG LGQFSCLNEIVQKNYFTYQLVVWGLLVAGGVSLIIFM" /citation=[1] CDS 246..722 /product="NADH dehydrogenase subunit 6" /gene="ND6" /note="putative" /codon_start=1 /translation="MRVMIMCVSLMSVFSIVLIAKQPISLGLVFIEGSMIACVEIALE VRSLLGFLLFLTYVRGVMVLFLYVLSIYPNEVYRFNLEFVMIVRRCCAMMGLVGLMNY EYVEISGSIIFKVYGWRKGVKPMYPNSRRFAVCDVSGVVFVYKNHSAFAKSKMRSR" /citation=[1] tRNA 725..792 /anticodon=(pos:755..757,aa:Phe) /product="tRNA-Phe" /note="putative" /citation=[1] rRNA 793..1737 /note="Location of 5' and 3' ends imprecisely known. Nucleotides 997-1539 not determined from both DNA strands." /product="small subunit rRNA" /note="putative" /citation=[1] tRNA 1738..1803 /anticodon=(pos:1769..1771,aa:Gly) /product="tRNA-Gly" /note="putative" /citation=[1] tRNA 1804..1868 /anticodon=(pos:1835..1837,aa:Asn) /product="tRNA-Asn" /note="putative" /citation=[1] tRNA 1869..1933 /anticodon=(pos:1899..1901,aa:Glu) /product="tRNA-Glu" /note="putative" /citation=[1] tRNA 1935..2002 /anticodon=(pos:1969..1971,aa:Cys) /product="tRNA-Cys" /note="putative" /citation=[1] tRNA 2003..2069 /anticodon=(pos:2034..2036,aa:Ile) /product="tRNA-Ile" /note="putative" /citation=[1] tRNA 2085..2151 /anticodon=(pos:2114..2116,aa:Gln) /product="tRNA-Gln" /note="putative" /citation=[1] tRNA 2157..2221 /anticodon=(pos:2187..2189,aa:Asp) /product="tRNA-Asp" /note="putative" /citation=[1] rRNA 2222..3465 /note="Locations of 5' and 3' ends imprecisely known. Nucleotides 2222-3293 not determined from both DNA strands." /product="large subunit rRNA" /note="putative" /citation=[1] misc_feature 3466..4623 /function="unknown" /note="May contain replication origin. No known coding function." /note="putative" /citation=[1] tRNA 4624..4690 /anticodon=(pos:4655..4657,aa:Tyr) /product="tRNA-Tyr" /note="putative" /citation=[1] /partial CDS 4692..>5314 /gene="cyt b" /note="putative" /codon_start=1 /translation="MVGNNTAYNTNAPKRVGPWRSTNKLVKIMNDRFYDLPCPVNLNA WWRFGSMLGLCLVIQLLRGLLLSAHYTAHEDMAFDSVVHIMRNVEKGWMLRNIHANGS SMFFICIYAHIARGLYYGSYLDKTVWYFGVHLFLLTMAEAFLGYTLPWGQMSYWGATV ITNMLRVRPVVGERMLRYVWGGXTVCNATLKRFYTLHFLLPFCNSGG" BASE COUNT 1620 a 727 c 1236 g 1727 t 4 others ORIGIN BASE COUNT 397 a 165 c 265 g 415 t 9533 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aag uu-------- ---------a 301 |ucu--uu-| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 acu(aaaa)a g--------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- --acg-u(-g caua)auu-- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ----guuuu( -guga-)aaa ---gug-ga- 1681 c--------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ----uuga-a c-guua guaUAA---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auaaauu 2041 --)------- -----UUA-G UACCUU(UU- GCAUA)AGGG |UUU-UUCAA GA--uc-aa- 2101 uuua-a---- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- gaau->---- --(------) ---------- ---------- ------uu-a 2701 auu-uuCCCG AA-UAAAA-G AG-AGUUAUU UUU-UUG-ag ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 ------uu-a gg-A-AAUC( GUGGUAG-A) GAUU-Ugauu --aaACUAA- AGAAUGG-CG 2881 GC(U-AGAU) ACU-AUUC-G C-GCUUUUAG AUAUCU-GGn nGGCU--UAA AA-AAA-UGU 2941 (-GUAA)GCA UU-UU-cuuu aa---- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-u -aagg-ggua aAAUU--UU- UU-GG(-GUU 3481 AAG)CUGAAA AA-UG----- gugaaa(uug -aug)uuu-a -aaaa-uuu- -----uuggu 3541 u--------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ucuauca ggc(uuuaaa 3781 cu-g)-gcua -uuag|g(u- au)-|uagug u(--auuuua )ac|-uaa-- ------<--a 3841 accaaacgga gaaaaagauu aauugggguc aucaucu--- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| a--u-uu|a- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aaa aUAAG-CC|- UA-UGAUC-- ---------- 4501 ---------- ---------- (ggag---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| --GGUCAGUA AUUAUGAuAA 4681 AA|ACGAGUA -AAAA-UAu- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |---uaaa-U A--AAGGUUU -UUAA-AUGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------cu aAACUUCU|C GA---CUG-U UU(AACAA)A AA-CAUU-UC 6841 CUUUUG|--- ---------- ---------- (-auguaag- ------)--- ---------- 6901 ---------- UAA-AAGGUA GUCCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G CAac------ ---------- 7021 --------ua ga(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------gua aug)ucu--- ---------- ---------| 7141 gu-UGUA-AA C-|GG-C|-G -GCGUU-(AA -CGUG)AGCG UC|C(UAA)- GG-UAGCGCG 7201 AUA-AU-U-U |GCUUUU(-C AAUU-)GAAG GA|UG-GUAU GAAAGGGUUA A-CGAAGAAG 7261 GU-------- ---------- -------GCU GUGUCUAAAA AUUC--a-au ----uu-AAA 7321 CU|A|ACUUU AA-GG(U-GA AGAGG)CCUU UAU----GUA AAAGAAGGAC GACAAG-ACC 7381 CUAUGA-|-A GCUUU--AUC UU|-aa--uu gga--gcu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-cuca-- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ggcu-c-uu -au---A-CG AUUUUGAUG( 8161 GGA)GA-UC- A|GUAGAA(- --------au aa----guc- )UUCU-AC|U |a|uc---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- -------aua uu-------- ---aaucuu- -a-------- ----cuagua 8881 u|-------- -uucc-ua-- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ac uu)--|---- 9001 -ua-UAUgu- |gug-GCUAG CUACUC|UAG G|GAUAACAG |C-GCA-A-U UUCUCCCGAA 9061 AG(A--UGGU )AUUGGAGGG --GAAGAUUG CG-ACCUCGA UGUU|GG--C U|U|UAGAU| 9121 AU-CC-UAGA GG-CG(--GA -GA)AGCUUC UGAU-GGU|G GGUC(UGUUC )GCCCU-UUA 9181 A--AAUCUA- --ACAUGAGC UGAGUUCAGA AC|GG-C(GU GA)GCUAGUU CAGUUUCUAU 9241 CC|UCUUU-- --|-|<---- ---------- ---------- ---------- -uugaaaug- 9301 >--------- ---------- --a-gcu-aa uu--(UUGU- AC(-GAAA)G GACU-)uuuu 9361 c--gc-<--- ---------- ---------- -------->u aaagc----- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----aau-> 9541 ---------- ---------- -----gcuuu gucacaaa-- ---------- ---------- 9601 ---------- -----ucugu (gguugc-au aaaua)a-ua -gg------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cu-(auagga a--)-ggguu a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.maxim 10775 bp RNA RNA 30-SEP-1996 DEFINITION Mitochondrion Pecten maximus.; 12S ribosomal RNA; 16S ribosomal RNA; COI gene; cytochrome oxidase subunit 1; NADH dehydrogenase subunit 1; ND1 gene; transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Lys; tRNA-Ala gene; tRNA-Asn gene; tRNA-Gly gene; tRNA-Ile gene. ACCESSION X92688 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; COI gene; cytochrome oxidase subunit 1; NADH dehydrogenase subunit 1; ND1 gene; transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Lys; tRNA-Ala gene; tRNA-Asn gene; tRNA-Gly gene; tRNA-Ile gene. SOURCE Mitochondrion Pecten maximus. ORGANISM Mitochondrion Pecten maximus. REFERENCE 1 (bases 1 to 5529) AUTHORS Sellos,D., Mommerot,M. and Rigaa,A. TITLE the putative origin of replication Molecular cloning and sequencing of a 5.5kbp fragment flanking JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5529) AUTHORS Sellos,D.Y. TITLE Direct Submission JOURNAL Submitted (31-OCT-1995) D.Y. Sellos, College de France/CNRS, Laboratoire de Biologie Marine, BP 225, 29182 Concarneau Cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X92688 Related sequences: X67246, X82501, X80659 & X80660. BASE COUNT 396 a 195 c 372 g 448 t 9364 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~gguaaau ca-------- ----uuuuuu 301 |auu--gu-| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 -cu(uagu)a gaggaga--- ---------- ---------- ---------- ---------- 901 ------(--- --)-uagaau |uagacguu- -uaag-c(-g gcga)ua--- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ------gaua auag-aua-- ----guagc( -guga-)gug ---aag-gu- 1681 uaaauaaauu a--------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- --aacagu-g a-<------- ---------- ---------- ---------- 1861 ----->agua ucgguggu-- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----gagc- 2041 --)------- ---acu-c-G CACCUU(UU- GCAUC)AUGG |CUUaUACUA CU-----uu- 2101 uu-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ------augc ugag->---- --(------) ---------- ---------- ---------g 2701 aaguauCCCG AA-AGUUUUG UG-AUCUACU UUC-UUA-cu u--------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 ------ua-C AG-GuUGGC( GUUAUAUuU) GCUA-UCUGG --AGAUGGG- GAGAUAG-UG 2881 GC(G-AAAU) ACU-uuuc-g c-ACUGGUUG AUAGCU-GGU UAUUC--CGG AA-AUA-UAU 2941 (-UUAA)GUA UA-g--ucuu cggu-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------uc-g -aagg-gguc aGCCC--CC- UC-AG(-GCU 3481 AAG)CUGAGG GG-GC---ua uuuuaa(agg augg)uua-a uuaag-aaug ga---aaggc 3541 uaa------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->gaagu-g ggc(uugaag 3781 g--a)-guua -ucuu|u(a- ug)-|gagug g(--guuaaa )cc|-aca-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| u--c-uu|ug ugu------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------ugu aCGGA-AU|- cu-cuuuuu- g---a----- 4501 ---------- ---------- (-------)< aacaauaa-- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------uu| -auagagguG AUAAUGU-AA 4681 AG|AUGAGUA -GUcg-aga- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 aguuguaagu guuuuaaggu cggggaaaga aacguaaggu uauguuccgu ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |--auuuu-u a--aaaaAAG -CUAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u aaGGGGAC|C GC---CUG-U UU(AUCAA)A AA-CAUG-GC 6841 UCCCUG|--- ---------- ---------- (-agcaaua- ------)--- ---------- 6901 ---------- UGG-GGGGUC GUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->U CC-CG-GU|G AGcu------ ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u gcg)------ ---------- ---------| 7141 -ggcuuA-AA C-|GG-A|-C -GCGGU-(AA ---AG)--CG UG|C(UAA)- GG-UAGCUAA 7201 AUU-au-g-- |GCCUAU(-U AAUU-)GUAG GU|CC--ugU GAAUGGUUUG A-CGAGUUUC 7261 CA-------- ---------- -------ACU GUCUCUAGUU UUUu-uu-g- ----GUGAAC 7321 UU|G|AAUUG GA-UG(U-GC AAAUG)CUUC CAU----GGG UAAGAAAGAC GAGAAG-ACC 7381 CCGUGA-|-A GUUag-aaau uu|-aa--gu uau--uggg| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaguuc caaggcuauu ugugg-ccga 7561 au-cguugag gagcacuaga acuuaguguu ucagaagg-- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---g gugaa-u-aa -uag--c-AG UUUUGGCUG( 8161 GGG)CA-GC- A|AAGGAG(- --------ca aa--gcuaga )CUCC-UU|u |a|ggg--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ----uguaaa 8821 ac-agau-gu guuacga--- ---------- ---------- ---------- --------cc 8881 c|---ac-aa ac----auua ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------agg ug)--|---u 9001 gau-uauca- |-ga-AGAAG UUACUC|CGG G|GAUAACAG |C-GUA-A-U CUGUCUUGAU 9061 AG(U--UCUU )AUAGAUGGG --CGGGUUUG CG-ACCUCGA UGUU|GG--C U|C|UGGAU| 9121 AU-CC-UAAG GC-UU(--gu agg)CGGUCU UGAG-GGU|U GGUU(CGUUC )GCCCA-UAA 9181 A--AAUCUG- --ACGUGAGC UGAGUUCAGA UC|GG-U(GA AA)GCUAGGU CGGUUUCUAU 9241 CU|UCUUU-- --|-|<---- ---------- ---------- --------cu uuuaaaauu- 9301 >--------- ---------- --g-ggc-uu ua--(GGGU- AC(-GAAA)G GACA-)uuua 9361 g--uu-<--- ---------- ---------- -------->c caggu----- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----gaug-> 9541 ---------- ---------- -----gccug uagugugu-- ---------- ---------- 9601 ---------- ---gauuuua (gaauaauuu uaaua)u-aa -aa------- ---------- 9661 ---------- -------~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.bleek 10775 bp RNA RNA 25-DEC-1997 DEFINITION Mitochondrion Loligo bleekeri.; tRNASerGCU; tRNA-Lys; tRNA-Trp; 12s rRNA; tRNA-Val; 16s rRNA; tRNA-Ile; tRNA-Gln; NADH dehydrogenase 1; tRNA-Pro; NADH dehydrogenase 6; cytochrome b apoenzyme; tRNA-Ser; NADH dehydrogenase 3; cytochrome c oxidase 2. ACCESSION AB0098 8 KEYWORDS tRNASerGCU; tRNA-Lys; tRNA-Trp; 12s rRNA; tRNA-Val; 16s rRNA; tRNA-Ile; tRNA-Gln; NADH dehydrogenase 1; tRNA-Pro; NADH dehydrogenase 6; cytochrome b apoenzyme; tRNA-Ser; NADH dehydrogenase 3; cytochrome c oxidase 2. SOURCE Mitochondrion Loligo bleekeri. ORGANISM Mitochondrion Loligo bleekeri. REFERENCE 1 (bases 1 to 8148) AUTHORS Tomita,K., Ueda,T. and Watanabe,K. TITLE Completing of squid (Loligo breekeri) mitochondiral genome sequencing JOURNAL Unpublished (1998) STANDARD No information REFERENCE 2 (bases 1 to 8148) AUTHORS Tomita,K. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) to the DDBJ/EMBL/GenBank databases. Kozo Tomita, University of Tokyo, Department of Chemistry & Biotechnology; 7-3-1, Hongo, Bunkyo-ku, Tokyo 113, Japan (E-mail: tomita@kwl.t.u-tokyo.ac.jp, Tel: 03-3812-2111, Fax:03-5800-6950) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AB009838 BASE COUNT 448 a 98 c 235 g 521 t 9473 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~uaaagaa uuaaguuaca aagug----- -----uugua 301 |uuuu-aau| gua------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 -au(aaaa)a u--------- ---------- ---------- ---------- ---------- 901 ------(--- --)-uguuua |uuauuuag- -guau-u(aa uagc)auaga ua-------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ----aauuuu gguu-uaa-- ----guacu( -guaa-)agg ---aua-ga- 1681 agua------ ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -uauuugu-u u-<------- ---------- ---------- ---------- 1861 ----->uuua guaaagau-- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----aaa- 2041 --)------- ---auuuu-G UACCUU(UU- GUAUA)AUGG |GUU-GAUga uauuauuag- 2101 uu-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ------guuu auag->---- --(------) ---------- ---------- ---------a 2701 gcu-auCUCG AA-UUGAA-A GG-AUUUAUU UGA-uaa-u- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------a-u au-guUAAC( GUGGUAA-A) GUUA-uaugu --uGAUUAU- UGAAUGG-UA 2881 AU(G-AAAU) GUU-uauc-g u-UUUUCAGU AUAGCU-AGU UUAUU--AGU GAUAAG-UAU 2941 (-uuaa)GUA CU-au-agug uu---- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------a-a -cauuaguuu auUGU--AU- GA-GG(-GAU 3481 AAG)CUUUAU AU-AA----- gaaugu(aga -auauuua-g ua-------- --guaauauu 3541 uauuauaauu ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uaaguag ggu-uaaaga 3781 uauu--guuu uucuu|a(a- ug)-|auuua a(--guuuua )ug|-u---- ---------a 3841 uguauaugua uucaggua-- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------gaa gUUAA-UA|- aa-ugguuau u--------- 4501 ---------- ---------- (-------)< aaugua---- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- --------a| guaacuaaau AUAAUGU-UA 4681 AU|AUGAGUA -Uuag-gu-- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |---uaag-u a--aaaUAAA -AUAA-AGGA AUUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u aGUAAUCU|C GC---CUG-U UU(AUCAA)A AA-CAUC-UC 6841 UCUUUG|U-- ---------- ---------- (-aauuuau- ------)--- ---------- 6901 ------AUA- UAA-GGAGUU GGGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CG-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aau)------ ---------- ---------| 7141 ----UUU-AA C-|AG-C|-U -GCGGU-(AU -UUUA)ACUG UA|C(UAA)- GG-UAGCAUA 7201 AUA-AU-U-U |GCCUUA(-U AAUU-)UGAG GC|UA-GAAU GAAUGGUUUG A-CGAAGGUU 7261 AA-------- ---------- -------UCU GUCUCUAUUU UAuu-uc-u- ----UAGAAA 7321 UU|A|AUUUU CAUAG(U-GA AAAAG)CUUG AAU----ucu UUAAAGGGAC GAGAAG-ACC 7381 CUAUauu|uA AUUcu--uau --|-u---au uu-------| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ------a-ga -u----u-ua uuUUAAUUG( 8161 GGG)UG-AU- U|AAGGAA(u aaaguauauu aguuaguaac )UUCC-UU|a |g|uag--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- gauaua---u u--------- ---g------ ---------- --------uu 8881 g|--aauaaa guaac-cgau au-uacg--- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ----uauaga ac)-c|guau 9001 auugcuuau- |-aa-UAUAG UUACCA|UAG G|GAUAACAG |C-GUA-A-U UUAUUUAGAG 9061 AG(U--UCUU )AUUGAAAAA --UAAGAUUG CG-ACCUCGA UGUU|GG--A U|U|AAAGU| 9121 AA-CC-UUAA GG-UG(--CA -GA)AGCUUU AAUA-GGU|A AAUC(UGUUC )GAUUU-UUA 9181 A--AACUUU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU GA)GCCAGGU UGGUUUCUAU 9241 CU|UUUAA-- --|-|<---- ---------- ---------- --------ag auuguuauu- 9301 >--------- ---------- --g-cuu-cu uu--(UAGU- AC(-GAAA)G GAUC-)gaag 9361 a-aag-<--- ---------- ---------- -------->c uaaa------ ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----guu-> 9541 ---------- ---------- ------uuua u--------- ---------- ---------- 9601 ---------- -----uaaac (gugaauaaa auaa-)g-uu -ua------- ---------- 9661 ---------- -------~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.coeru 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Albinaria coerulea. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Albinaria coerulea. ORGANISM Mitochondrion Albinaria coerulea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X83390 LOCUS MIACDNA 14130 bp DNA UNA 05-SEP-1995 DEFINITION A.coerulea complete mitochondrial DNA. ACCESSION X83390 KEYWORDS ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; cytb gene; lrRNA; ND1 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; srRNA; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Albinaria coerulea. ORGANISM Mitochondrion Albinaria coerulea Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Mesurethra; Clausiliacea; Clausiliidae. REFERENCE 1 (bases 1 to 14130) AUTHORS Hatzoglou,E., Rodakis,G.C. and Lecanidou,R. TITLE The complete sequence of the mitochondrial genome of the land snail Albinaria coerulea JOURNAL Genetics 140, 1353-1366 (1995) REFERENCE 2 (bases 1 to 14130) AUTHORS Rodakis,G.C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1994) to the EMBL/GenBank/DDBJ databases. G.C. Rodakis, Univ.of Athens, Dep. of Biochemistry, Cell and Mol. Biology and Genetics, Panepistimiopolis, Athens 157 01, GREECE COMMENT NCBI gi: 975668 FEATURES Location/Qualifiers source 1..14130 /organism="Albinaria coerulea" /mitochondrion CDS 11..1648 /gene="ND5" /note="starting codon=ATT, termination codon=TAG; pid:e197105; NCBI gi: 975669" /codon_start=1 /transl_table=5 /translation="MLLGVLCAIMGVIYMVLNMQNSSYLLMFNLFSTQSVNFNLALIC DKVSTSFLVVVLLISSCVFLFANEYMSEDHYNIRFGWILISFVASMGILILSGSIFTL LLGWDGLGLTSFALIAYYDNYNASSSAFLTLMTNRLGDVLIIATFSVILVTGLTVHFP PYTLVWLSSILFTIASFTKSAQYPFSAWLPAAMAAPTPVSALVHSSTLVTAGIYLMIR CFMVDGAPAEMYSLMGLVGSITCLLGGSVALFEYDLKKVIALSTLSQLGVMMYSLSLN LPYLALLHLYGHAMFKAMLFLGAGLILMMSYGTQDLRLLGSLLYSSPIVISLLNISML CLMGFPFVSSFYSKHLILEKMLDMNCNFFTSMMFMLGTLLTGMYSIRLMKFLCWGNNN NKPSYCNMSWQSKMSMFPLAALAVLSGQLMSYLDSSYMTFSWSTNQYNLILWGVLFLS IFFGIVMKFGNFYPTLMSSMMFLGPTSYNLLHYTKSLLIYMKRIDLSISEPNWVMSNL MYSSSWRVMSLFNWLTNYMLVTWFLLVWLMIMSILMW" CDS 1642..2541 /gene="ND1" /note="starting codon=ATG, termination codon=TAA; pid:e197094; NCBI gi: 975670" /codon_start=1 /transl_table=5 /translation="MVVFKSLLLNLCILLSVAFYTLLERKVLSSMQIRKGPNKVGLYG IIQPIADALKLFLKEFFIPVNSNSFMFMILPLLGLTLSLMLWAVFPSMWMFNFHSYLL MLFVALTGTFVYVIIFAGWSSNSKYSFLGGMRAAAQTISYEVSMLLLLFFAVLMYRTY SWYEAGLSSPIGIIIFIIMFIWFASCLAETNRAPFDFAEGESELVSGFNIEYYGGMFA LLFLAEYSSILFMCMMSTVWFLYSDMIFIMTLLILLIAMAFLFARGVYPRHRYDLLMN LCWKSFLPFSLCCICYSMLLWIV" CDS 2549..2846 /gene="ND4L" /note="incomplete termination codon=T; pid:e197095; NCBI gi: 975671" /codon_start=1 /transl_table=5 /translation="MTIYSYLLLLCMVMFVTFFTQKNNILSLMVVLESLMLITLSSVA VSLNYMAGSSMVMILLLCFAAAEAALSLSLLVCFIQVNSSCEMLAMNKILFAKKS" CDS 2847..3949 /gene="cytb" /note="starting codon=ATA incomplete termimnation codon=TA; pid:e197101; NCBI gi: 975672" /codon_start=1 /transl_table=5 /translation="MAESMLSLPTPLNISIWWNMGSILGMILGLQLLTGILLSMHYSS QLEMAFSSIIHIIRDVPGGWFLRLLHANGASLFFLFMYAHIGRGLYYQSYIIHPRVWM VGVTIFLVSMATAFLGYVLPWGQMSFWGATVITNLLSAVPYFGPSMVEWVWGGFSVGH ATLNRFFSLHFLLPFLISGLALLHIIFLHDKGSSNPLGNLFHLSKKPFHPYFTIKDSV GFLMVFGVLLMITFFSPSLLLDPENYISANPMVTPTHIQPEWYFLFAYAILRSIPSKL GGVVALLMSILILYFLPLSSYGKSIPVSMNIIYQVLFWILVVTFIILTWLGACEIEEP YLSLAGPLTLLYFLMFLLLGMSNNLNFNLIQLK" tRNA 3950..4016 /anticodon=(pos:3981..3983,aa:Asp) /product="tRNA-Asp" tRNA 4012..4079 /anticodon=(pos:4044..4046,aa:Cys) /product="tRNA-Cys" tRNA 4080..4149 /anticodon=(pos:4115..4117,aa:Phe) /product="tRNA=Phe" CDS 4153..4827 /gene="COII" /note="pid:e197096; NCBI gi: 975673" /codon_start=1 /transl_table=5 /translation="MSTWGQINLMDPASPIQMEMMLFHDHAMAILIGIFTLVSLLGVK LCFNTLSTRTMHEAQLLETLWTILPAFLLVWLALPSLRLLYLLDEQGSEGIILKAIGH QWYWSYEMPSMNISNFDSYMIPEEDLKPGDYRLLEVDNRPMVPYGLDINVITTSADVI HAWALPSMGVKMDAVPGRLNSMGFHANLPGIYYGQCSEICGANHSFMPITVEAIDVKD FIKMCN" tRNA 4849..4912 /anticodon=(pos:4879..4881,aa:Tyr) /product="tRNA-Tyr" tRNA 4908..4975 /anticodon=(pos:4939..4941,aa:Trp) /product="tRNA-Trp" tRNA 4977..5043 /anticodon=(pos:5008..5010,aa:Gly) /product="tRNA-Gly" tRNA 5040..5107 /anticodon=(pos:5072..5074,aa:His) /product="tRNA-His" tRNA complement(5112..5172) /anticodon=(pos:5142..5144,aa:Gln) /product="tRNA-Gln" tRNA complement(5171..5237) /anticodon=(pos:5204..5206,aa:Leu) /product="tRNA=Leu(UUR)" CDS complement(5254..5421) /gene="ATPase8" /note="start codon=CAT, termination codon=CTA; pid:e197106; NCBI gi: 975674" /codon_start=1 /transl_table=5 /translation="MPQLSPMNGLLIMFSVTLMLLIVLVINHFMLTPMASPLLASHLK TKKSGGEKLYY" tRNA complement(5423..5483) /anticodon=(pos:5453..5455,aa:Asn) /product="tRNA=Asn" CDS complement(5484..6126) /gene="ATPase6" /note="start codon=CAT, incomplete termination codon=A; pid:e197103; NCBI gi: 975675" /codon_start=1 /transl_table=5 /translation="MMVDLFSSLDGMTSLWSWLTPMFLSVFMIWNKTWSMDQNNIIKY LAASNWNNSTYNLTKSLLTIMMVLIIFNNLLGMAPFTYGITTSLWVNMTLALLLWGLI LLSGYIKSPKKSLAHLAPSGAPLLLLPFLILIESISIMIRPLTLTVRLVANMSAGHII LALMASVLSSNLSNTSLSLSYLIMVGYYLFEFFVCFIQAYIFTLLLSLYMNEHP" tRNA complement(6128..6194) /anticodon=(pos:6162..6164,aa:Arg) /product="tRNA-Arg" tRNA complement(6198..6269) /anticodon=(pos:6133..6235,aa:Glu) /product="tRNA-Glu" rRNA complement(6270..7028) /product="srRNA" tRNA complement(7029..7089) /anticodon=(pos:7057..7059,aa:Met) /product="tRNA-Met" CDS complement(7090..7441) /gene="ND3" /note="starting codon=TAT, incomplete termination codon=A; pid:e197097; NCBI gi: 975676" /codon_start=1 /transl_table=5 /translation="MILYVLPTSLSLCLLLMIIYLLTANLFKFASYELKTPFECGFDP LSNMRSPMTTRFFILTVLFLIFDVEVVLLFPVLSMVSFMTSPLIIMSIILFMMVLLIG LLYEMYYGVLDWVLN" tRNA complement(7451..7518) /anticodon=(pos:7486..7488,aa:Ser) /product="tRNA-Ser(UNC)" tRNA complement(7507..7564) /anticodon=(pos:7528..7530,aa:Ser) /product="tRNA-Ser(AGN)" CDS 7565..8878 /gene="ND4" /note="pid:e197102; NCBI gi: 975677" /codon_start=1 /transl_table=5 /translation="MTYLILLGASICLFPFWEVTMLTLAFIIPMSLTYLNINFTFSFS SELIWLTPIGTALIFLTLMVTLLVLIGTYNIKNYKYIGCLSSLNLVLMMAFCVCDFLT FYVMFEVSLIPTLLLILLWGYQPERMQAGFYLMLYTVTASLPLLLLLLYLYYTVGSLN FYIIMVYYSFNNNPLMLVGLMMAFLVKLPIYTCHLWLPKAHVEAPLGGSMVLAGVLLK LGGYGLYMLINFIISKSSSLVISVIITLSLWGAVIASIICIQQVDIKALVAYSSVAHM SLVSAGILMMSNWSYTCAKMTMIAHGYTSSALFVLANLSYLKIKSRSLMFMKGLLAIF PAMAFYWFLFSCMNMAAPPTLNFIGELLIIPSMYIASYMLLILMCIIMFISAGYSLYM YMTVNHGELGLYITPSIQLKNVDYHVLTAHLLPTFILLIPQLFSV" tRNA complement(8888..8953) /anticodon=(pos:8919..8921,aa:Thr) /product="tRNA-Thr" CDS complement(8961..9740) /gene="COIII" /note="start codon=CAT, termination codon=TAA; pid:e197104; NCBI gi: 975678" /codon_start=1 /transl_table=5 /translation="MQKTPFHLVEYSPWPLLVSLSLTSMPLGLIYYIRFGSIYLLLYG MLLTSIIAYMWWRDIVREATYQGHHTTYVVKGLKLGMALFILSEVCFFFAFFWAYFHS SLAPSIEIGSVWPPIGITVLNVFQVPLLNTSVLLLSGVSITWAHHALTEGKYYSTLSG LFFTVLLGVYFLMLQYGEYNETSFSIADGVYGSTFFMATGFHGLHVMVGTLFLFVNLV RTYYYHFSTTHHVGFLAAAWYWHFVDVVWLFLYISIYWWGS" tRNA 9783..9849 /anticodon=(pos:9814..9816,aa:Ile) /product="tRNA-Ile" CDS 9850..10773 /gene="ND2" /note="pid:e197099; NCBI gi: 975679" /codon_start=1 /transl_table=5 /translation="MTLQSVLLGAMIILGPILSMTSSNWIIIWIGLEISLLGFVSYYM LMKKIMSGEGIMMYFLIQSVSSTVMLLNGLYIFVNHASSYIYLFIFITMLMLKIGMFP LHFWIIPVYSKLSYLNIGIVGLLLKIVPMWILMHMGCITSEMLNLITMLSVTSMLFGA LIGMNLSKMRMVLGASTITHNGWLGMSCISGSLFKYFITYGFSLVILLVFLYLGDKMS ISLSLLSLSGLPPFMLFIGKINVLLMMMETNLWFIVLVFAILSAVISLVYYLKFSVMF FMNMKNNYLKHYKMAMFLLVNVTFGMLLFLT" tRNA 10774..10840 /anticodon=(pos:10805..10807,aa:Lys) /product="tRNA-Lys" CDS 10834..12363 /note="start codon=TTG, incomplete terminition codon=TA; pid:e197098; NCBI gi: 975680" /codon_start=1 /transl_table=5 /translation="MRWFYSTNHKDIGTLYMLFGIWCGMVGTGLSLLIRLELGTSGTL TDDHFYNVIVTAHAFVMIFFMVMPIMIGGFGNWMVPLLIGAPDMSFPRMNNMSFWLLP PAFILLICSSMVEGGAGTGWTVYPPLSSSLAHSGASVDLAIFSLHLAGMSSILGAINF ITTIFNMRSPGMTMERVSLFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDP AGGGDPILYQHLFWFFGHPEVYILILPGFGMISHILGNSAMKQPFGTLGMIYAMISIG ILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAIPTGIKVFSWLMTIYGSKVQYTASMY WVLGFIFLFTLGGLTGIVLSNSSLDIMLHDTYYVVAHFHYVLSMGAVFAIFAGFNFWF PVMTGLILHERLAKAQFVVMFIAVNMTFFPQHFLGLAGMPRRYSDYPDSYFMWNQLSS YGSLMSVFAVLLFVLIVWEAFLSQRSLLFVDATLYSREWSDGYFPPDFHSNIYQSYIT I" tRNA 12363..12427 /anticodon=(pos:12395..12397,aa:Val) /product="tRNA-Val" rRNA 12428..13462 /product="lrRNA" tRNA 13463..13526 /anticodon=(pos:13491..13493,aa:Leu) /product="tRNA-Leu(CUN)" tRNA 13523..13587 /anticodon=(pos:13552..13554,aa:Pro) /product="tRNA-Pro" tRNA 13586..13655 /anticodon=(pos:13617..13619,aa:Ala) /product="tRNA-Ala" CDS 13663..14130 /gene="ND6" /note="pid:e197100; NCBI gi: 975681" /codon_start=1 /transl_table=5 /translation="MMSLTFMAGLIFPVFMMLKGINPMSLLLALLTLSLCAVLWLGSF MSSWYAYILFIVYIGGILVLFIYVCMISSNYIASQHMYKSLLYAWGAVMLMSLTMETD TFIILGSNMMYTSVNIPMTILIFLSIYLLIVFFAVVNLMVNMTSILMVESSQV" misc_feature 10834..12362 /gene="COI" BASE COUNT 4628 a 1951 c 2196 g 5355 t ORIGIN BASE COUNT 398 a 128 c 150 g 359 t 9740 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~aaaucuaaa ua-------- ---------- 301 |uua--ac-| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---aauacu( gguga-)aga ---uc--aa- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -------c-a u-<------- ---------- ---------- ---------- 1861 ----->--aa aaagu----- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----aaa- 2041 --)------- ------ac-A UACCUU(UU- GCAUA)AUGG |UGA-UACUA AA-uuu-auu 2101 cuaa------ ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- gauu->---- --(------) ---------- ---------- ------uuau 2701 -au-uuCCCG AA-AAUAA-A AG-AUCUAAC UUU-UCA-Ug cgaaauuauu ag-------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -aacacaa-a au-c-UAUU( GUGGCAU-A) AAUA-gaccu --cAAUGAA- AAGUUAG-UA 2881 GU(G-AAAC) ACU-uuca-c --UUUUAUUG AUAUCU-GGa uauag--aaU AA-AUA-UAU 2941 (uuagu)AUA UA-aa----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- -------uac auucu--ua- aa-gc(-gau 3481 aag)guuuua ag-cg----a agaauu(uua -uau)aac-a guaaaaauuu --cuaauuaa 3541 ua-------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->auauu-- aac(ugguag 3781 uuuu)-auug --aua|u(a- ca)-|ua-ua u(--uuauau )au|-uaa-- ------<--a 3841 uuc------- ---cuu---- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------gaa auucu-au|- uuauauauu- ----ac---- 4501 ---------- ---------- (aaccg--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -------gu| caguauacua AUAAUGU-AU 4681 CA|AUUAGUA -aaua-gg-- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |---uaua-a u--aaAUAUU -AGUA-AGGA ACUCGACAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------ua auUGCUUA|C GA---CUG-U UU(AUCAA)A AA-CAUA-GC 6841 CAAAAG|--- ---------- ---------- (-uagaua-- ------)--- ---------- 6901 ---------- UUU-UUGGUG UUAUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aaa)------ ---------- ---------| 7141 ---UUUU-AA C-|GG-C|-C -GCAGU-(AC -CUUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUA-AU-U-U |GACUUU(-U AAAU-)GGAG CC|UA-GAAU GAAAGAAAGA A-CG-UAUGC 7261 AA-------- ---------- -------CUU GUCUCAUUGA UAUu-ac-u- ----uuaaau 7321 uU|A|AUGGU UG-AG(U-GA AAAUA)CUCA UAau---uuu aauAAUAGAC GAGAAG-ACC 7381 CUU-AG-|-A AUUUU-uAAA ag|--c--aa uaa--gua-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- auucu-u-au -ua---g-aU UUUUUGUUG( 8161 GGG)CA-AC- A|AUAUUU(- --------ca aa---uaau- )AAAU-AU|a |u|ua---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 a----ug-aa aguaa-uaag ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc ga)--|---u 9001 uaaAUAAUUa |uag-AAAAA UUACCU|AAG G|GAUAACAG |C-AUA-A-u uu-------- 9061 --(uauuaau )--------- ---aagcUUG UG-ACCUCGA UGUU|GG--A C|U|AGGUA| 9121 CU-AU-UAAG GC-UA(--AU -CG)UUUUAA UAUA-AUA|U GUUC(UGUUC )GAAC--UUU 9181 G--UUACCU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU AA)GCCAGGU CAGUUUCUAU 9241 CU|UUuau-- --|-|<---- ---------- ---------- ---------- ------cug- 9301 >--------- ---------- --g-ccu-au aa--(UAGU- AC(-GAAA)G GACC-)uuau 9361 a--gg-<--- ---------- ---------- -------->c acuua----- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----uuca-> 9541 ---------- ---------- -----uaagu aua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.nemor 10775 bp RNA RNA 11-JAN-191 DEFINITION Cepaea nemoralis. ACCESSION No information KEYWORDS No information. SOURCE Cepaea nemoralis. ORGANISM Cepaea nemoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U23045 ID MICNMU230 standard; circular DNA; ORG; 14100 BP. XX AC U23045; XX DT 19-MAY-1995 (Rel. 43, Created) DT 19-MAY-1995 (Rel. 43, Last updated, Version 1) XX DE Cepaea nemoralis complete mitochondrial genome. XX KW . XX OS Cepaea nemoralis OC Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; OC Stylommatophora; Sigmurethra; Holopoda; Helicacea; Helicidae. XX OG Mitochondrion XX RN [1] RP 1-14100 RA Terrett J.A., Miles S., Thomas R.H.; RT "Complete DNA sequence of the mitochondrial genome of Cepaea RT nemoralis (Gastropoda: Pulmonata)"; RL Unpublished. XX RN [2] RP 1-14100 RA Thomas R.H.; RT ; RL Submitted (18-MAR-1995) to the EMBL/GenBank/DDBJ databases. RL Richard H. Thomas, Department of Zoology, The Natural History RL Museum, Cromwell Road, London, SW7 5BD, England XX CC NCBI gi: 733433 XX FH Key Location/Qualifiers FH FT source 1..14100 FT /organism="Cepaea nemoralis" FT /tissue_type="hepatopancreas" FT /dev_stage="Adult" FT /mitochondrion FT CDS 1..1530 FT /note="NCBI gi: 733434" FT /codon_start=1 FT /product="cytochrome oxidase subunit 1" FT tRNA 1531..1590 FT /anticodon=(pos:1561..1563,aa:Val) FT /product="tRNA-Val" FT rRNA 1586..2800 FT /note="16S rRNA" FT tRNA 2805..2864 FT /anticodon=(pos:2834..2836,aa:Leu) FT /product="tRNA-Leu(CUN)" FT tRNA 2866..2927 FT /anticodon=(pos:2896..2898,aa:Ala) FT /product="tRNA-Ala" FT CDS 2922..>3413 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733435" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 6" FT tRNA 3417..3479 FT /anticodon=(pos:3446..3448,aa:Pro) FT /product="tRNA-Pro" FT CDS 3638..5167 FT /note="NCBI gi: 733436" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 5" FT CDS 5176..>6057 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733437" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 1" FT CDS 6062..>6298 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733438" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 4L" FT CDS 6298..7440 FT /note="NCBI gi: 733439" FT /codon_start=1 FT /product="cytochrome b" FT tRNA 7477..7536 FT /anticodon=(pos:7507..7509,aa:Cys) FT /product="tRNA-Cys" FT tRNA 7539..7599 FT /anticodon=(pos:7569..7571,aa:Phe) FT /product="tRNA-Phe" FT CDS 7599..8252 FT /note="NCBI gi: 733440" FT /codon_start=1 FT /product="cytochrome oxidase subunit II" FT tRNA 8245..8301 FT /anticodon=(pos:8272..8274,aa:Tyr) FT /product="tRNA-Tyr" FT tRNA complement(8473..8530) FT /anticodon=(pos:8499..8501,aa:Gln) FT /product="tRNA-Gln" FT CDS complement(8581..8742) FT /note="NCBI gi: 733441" FT /codon_start=1 FT /product="ATPase subunit 8" FT tRNA complement(8744..8804) FT /anticodon=(pos:8764..8766,aa:Asn) FT /product="tRNA-Asn" FT CDS complement(<8828..9385) FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733442" FT /codon_start=1 FT /product="ATPase subunit 6" FT tRNA complement(9427..9489) FT /anticodon=(pos:9457..9459,aa:Arg) FT /product="tRNA-Arg" FT tRNA complement(9484..9545) FT /anticodon=(pos:9512..9514,aa:Glu) FT /product="tRNA-Glu" FT rRNA complement(9553..10262) FT /product="12S rRNA" FT CDS complement(10272..10676) FT /note="NCBI gi: 733443" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 3" FT tRNA complement(10691..10750) FT /anticodon=(pos:10718..10720,aa:Thr) FT /product="tRNA-Thr" FT CDS complement(<10752..11564) FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733444" FT /codon_start=1 FT /product="cytochrome oxidase subunit III" FT tRNA 11723..11777 FT /note="tRNA-Ser(AGN)" FT /anticodon=(pos:11746..11748,aa:Ser) FT CDS 11813..>13061 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733445" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 4" FT tRNA 13069..13128 FT /note="tRNA-Ile" FT /anticodon=(pos:13096..13098,aa:Ile) FT CDS 13154..>14098 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733446" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 2" XX SQ Sequence 14100 BP; 3689 A; 2671 C; 2998 G; 4742 T; 0 other; BASE COUNT 357 a 208 c 255 g 395 t 9560 others ORIGIN 1 |uuaguaugc uuuacucgcc ugcgcuuaca cauccauuuu aaccaucuuu uuuacaaguu 61 aauugacaca cgugugaaau ucgauauuau cuuaaguaau ucggcauauu uuuaggaaaa 121 aaucuuacga ccccggggug ucugugacac aacuuuucgc uugcgguucu agcuguugua 181 ucugcuuaac uaagu----- ---------- ---------- ---------- ---------- 241 ---aua-gua uuaa------ --------aa auacauaaug u--------- -----uuaca 301 |aca--uua| caau------ -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- -------cg( -ggaa-)cgu ---gcuuag- 1681 uaugcuuuua auga------ ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ucuuacuc-a c-<------- ---------- ---------- ---------- 1861 ----->uaau aucuauugcu ---aa---ga cgu------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----aaa- 2041 --)----acg uuu-aaua-U UUACUU(UU- GCAUC)AUGG |GUC-AAUUA A------aa- 2101 uuuuc----- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------cu gauc->---- --(------) ---------- ---------- ---------g 2701 uuu-uuCGCG AA-GCCGC-A GG-AGCUAGU UAC-aag-c- -uau------ ---------- 2761 -(-------- ---------- ---------- ---------- uuaggcuu-) ---------- 2821 -gua------ gg-agGUAC( GUGGCAU-U) GUGC-ucua- ---uacgUG- UAGUUAG-GA 2881 GU(G-AUAG) GCC-uauc-a a-CUGCGUGG AUAUCU-CGA Ugcac--acg aa-aau-aug 2941 (-uag-)uau aa-uu----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- --------cc ggacu--ac- ga-aa(-guu 3481 aag)ccucgu ag-ua----u auacaa(aua -uua)gug-u auc------- ----uuuuaa 3541 cggcc----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->cuaac-c guc(uauuau 3781 uuug)-ggca -auca|u(a- -u)-|uuaug u(--ugagcu )au|-guu-- ------<--g 3841 uaacau---- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acu agugu-gc|- cg-cggg--- ---------- 4501 ---------- ---------- (-------)< uguuuauuug u--------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| ---uuugUUG AUAAUGU-UG 4681 UC|AUAAGUA -GC------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |---acau-- u--aaauagC -CUGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u cuGCUUCU|C AC---CUG-U UU(AUCAA)A AA-CAGC-GC 6841 UGUAUG|--- ---------- ---------- (-uaauuga- ------)--- ---------- 6901 ---------- CGU-AUGGUA C-UUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CC-AU|G G--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aug)------ ---------- ---------| 7141 ----CUA-AA U-|AG-C|-C -GCAGU-(AC -UCUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUA-AU-U-U |GGCUUA(-U AAUU-)GAAG UC|UG-GCUC GAAAGAAUUA A-UG-GGAAG 7261 CA-------- ---------- -------GCU GUCUCCAGGg guac-ua-gu ----ACAAAA 7321 UU|A|GUAAG UA-AG(U-GA AAAUA)CUUG CGG----gaa gAAAAUAGAC GAGAAG-ACC 7381 CUA-GA-|-A GCUUG----- --|------- ---------| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------- ---------- --UUUGUUG( 8161 GGG)CG-AC- A|GAAUUG(- --------ca ug---gaac- )CAAU-UU|u |a|u----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- ---gg-aug- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u ga)--|---- 9001 cguAUAGCAg |gaaauuAAG CUACUC|UAG G|GAUAACAG |C-AUA-A-u ua-------- 9061 --(---aac- )--------- ---uuguUUG UG-ACCUCGA UGUU|GG--A C|U|AGGUA| 9121 GA-AU-AGUC CC-U-(---a -ga)-AGGGA CUAA-AAA|U GCUC(UGUUC )GAGCA--gc 9181 u--UAACCU- --ACAUGAUC UGAGU-CAGA CC|GG-C(GU AA)GCCAGGU CAGUUUCUAU 9241 CU|UUUUA-- --|-|<---- ---------- ---------- ---------- ------aua- 9301 >--------- ---------- --a-uac-uu gc--(UAGU- AC(-GAAA)G GACC-)guag 9361 g--uu-<--- ---------- ---------- -------->g cauua----- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ----auac-> 9541 ---------- ---------- -----ua~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.herkl 10775 bp RNA RNA 02-DEC-1996 DEFINITION Euhadra herklotsi; cytochrome oxidase; large subunit ribosomal RNA; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Leu; transfer RNA-Pro; transfer RNA-Val. ACCESSION Z71693 KEYWORDS cytochrome oxidase; large subunit ribosomal RNA; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Leu; transfer RNA-Pro; transfer RNA-Val. SOURCE Euhadra herklotsi. ORGANISM Euhadra herklotsi. REFERENCE 1 (bases 1 to 2051) AUTHORS Watanabe,K. and Thomas,R.H. Yamazaki,N., Ueshima,R., Terrett,J.A., Yokobori,S., Kaifu,M., Segawa,R., Kobayashi,T., Numachi,K., Ueda,T., Nishikawa,K., TITLE structures Evolution of pulmonate gastropod mitochondrial genomes: comparisons of complete gene organization of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2051) AUTHORS Yokobori,S. TITLE Direct Submission JOURNAL Submitted (20-MAY-1996) Shin-ichi Yokobori, Institute of Zoology, University of Munich, Luisenstrasse 14, Munich, D80333, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z71693 BASE COUNT 514 a 174 c 231 g 562 t 9294 others ORIGIN 1 |-agcuuaau cuuccuccag auuuucaugg aaauuuagag accucuauug guauuaauaa 61 aucuaaguau aguauaaaaa auauaauucg cuuacaacga auagaucauu aaguacuuag 121 u{5'endofr RNA,asdefi nedinGBent ry>------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------uaua u--------- -------uua 301 |aca--uau| u--------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- -guu-uau-- ----auauu- -auau--aau ---auacua- 1681 gcgguau--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uua-a u-<------- ---------- ---------- ---------- 1861 ----->--cu aauagcuu-- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----auua- 2041 --)------- --a-aguu-A UACCUU(UU- GCAUA)AUGG |AUU-AACUA UA-----ag- 2101 gu-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -----aacaa aaua->---- --(------) ---------- ---------- ---------g 2701 uuu-uaCACG AA-UUAGU-U UG-AGCUAAA UAC-GAU-a- uaau------ ---------- 2761 -(-------- ---------- ---------- ---------- -auuagcu-) ---------- 2821 -guua----- aa-auuGGU( GUUGCAU-A) ACCu-uucau a-aaaGUCA- UAUUUAG-GA 2881 GU(G-AUAG) GCC-ucuc-a a-AAACUAAG AUAUCU-UGA UUCUA--AUU AA-ACG-UAU 2941 (-uua-)gua ca-auu---- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- -----aauac aUUUA--UU- GA-GU(-GCU 3481 UAG)GCUUAA UA-AA----a a--uau(uaa -uuu)aua-g uauuucuu-- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->auauuaa ggu(uuaaua 3781 ----)-acua -aaua|u(a- ca)-|uauua u(--aauaac )au|-uaa-- ------<--a 3841 cuguuuu--- ---aaauuua uauuu----- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------agu aauua-gu|- aa-uaguuaa g--------- 4501 ---------- ---------- (uuuaa--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- --------a| uuu-cuuUUG AUAAUGU-UU 4681 AU|AUUAGUA -uaaa----- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |-----cg-a c--auACUUC -UAUA-AUGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-----auau ucUCUUCU|C AA---CUG-U UU(AUCAA)A AA-CAUA-AC 6841 UGUGUG|--- ---------- ---------- (-uacuaa-- ------)--- ---------- 6901 ---------- UAC-AUAGCA UUUUCu<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G NU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- uau)------ ---------- ---------| 7141 ---AUUA-AA U-|AG-C|-C -GCAGU-(AU -UUUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AA-U-U |GACUUA(-U AAUU-)GAAG UC|UG-GAAU GAAUGAAAGU A-UG-GGGAG 7261 UC-------- ---------- -------UCU GUAUCAUUUA GGUa-aa--- ----UUUGAA 7321 UU|A|CUUAG GU-AG(U-GA AAAUU)CUAC UGu----aaa aaUAAUAGAC GAGAAG-ACC 7381 CUA-GA-|-A AAUUU-aagu aa|-uc--ua uau------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- uauag-u-au -au---c-aa UUUUUGUUG( 8161 G--)CG-AC- A|UAGuag(- --------ca ua---aaac- )cuac-uu|a |a|ug---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 -|-------a aaacc-agca ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------c ca)--|---u 9001 guuuugugu- |gugaAAAAU UUACUC|UAG G|GAUAACAG |C-AUN-A-u au-------- 9061 --(u--uaa- )--------- ---aagUUUG UG-ACCUCGA UGUU|GG--A C|U|AGGAA| 9121 A--UA-AUAG CC-u-(---a -aa)-AGGUU UUUUAUAU|U GCUC(UGUUC )GAGCA-UAA 9181 A--ACUCCU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU GA)GCCAGGU CAGUUUCUAU 9241 CU|UUAAA-- --|-|<---- ---------- ---------- ---------- ------uuu- 9301 >--------- ---------- --u-cuu-au aa--(UAGU- AC(-GAAA)G GAAU-)uuau 9361 u--gg-<--- ---------- ---------- -------->u ugc------- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----aau-> 9541 ---------- ---------- -------gca ugc]------ ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|-- 9961 ---(------ ---)------ ---------- ---------- ---------- ---------- 10021 -|-------- ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---------- ---------- ---------- --------(- ---------- 10141 ---------- ---------- -)-------- ---------- ---------- ---------- 10201 ---------- -|-|------ ---------- ---------- ---------- ---------- 10261 ---------- ---------- ---------- ---------- ---------- ---------- 10321 --------|{ -end-defin ed-in-GB-e ntry}---aa uaauuuagca gaauauaugc 10381 -gaaugacuu -agaaucAUU AGAuaacuuu aaaguuaauu auuaaaagca guauuggaau 10441 auuucaacuu uggaaguugg gggcuaguuu aucuacuuuu aaaguuugac acuguacuuu 10501 auauagaaga ucuaauuugc guuuagggag aggacgauag ugcccgguuu cauauguuua 10561 guauugcuua uuuauuaggg auaaugguau uuuuuuuuau guuuugauua auaauacuuu 10621 ugauuaccuc aaacccgacu agggcauuac uuuuuuuuau agguguaguu guuaguagua 10681 uauaucauuu uuua~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.K.tunic 10775 bp RNA RNA 12-OCT-1994 DEFINITION Mitochondrion Katharina tunicata.; . ACCESSION U09810 KEYWORDS . SOURCE Mitochondrion Katharina tunicata. ORGANISM Mitochondrion Katharina tunicata. REFERENCE 1 (bases 1 to 15532) AUTHORS Boore,J.L. and Brown,W.M. TITLE black chiton, Katharina tunicata Complete DNA sequence of the mitochondrial genome of the JOURNAL Genetics 138, 423-443 (1994) STANDARD No information REFERENCE 2 (bases 1 to 15532) AUTHORS Boore,J.L. TITLE Direct Submission JOURNAL Submitted (17-MAY-1994) Jeffrey L. Boore, Cell Biology and Neuroanatomy, University of Minnesota, 321 Church St. SE, Minneapolis, MN 55455, USA STANDARD full automatic COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09810 NCBI gi: 557273 BASE COUNT 511 a 163 c 168 g 433 t 9500 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~accu u--------- ----ccaaua 301 |ACA--auu| aca------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)---a-ua |uaa-auua- -guau-c(-c aaa-)aaaaa -c-uuua--- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- -----auuua aaca-aca-- ----guacu( -guaa-)agg ---aaua--- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 --------aa ugaaguac-a g-<------- ---------- ---------- ---------- 1861 ----->uaaa guAUAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaca 2041 --)------- -----CUA-G UACCUU(UU- GCAUU)AUGG |UUU-AACGA GA--uu-au- 2101 uuua-u---- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -auu->---- --(------) ---------- ---------- -----aua-a 2701 uau-caCUAG AA-AAAAA-A GG-AGCUAUA UAU-AAA-C- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -------u-u ua-u-UAAU( GUAGCAA-A) AUUAaauuaa --uGAUUUA- UUUAUAG-AA 2881 GU(U-AAAU) GCA-UGCC-G U-CUUUUUUG AUAGCU-AGU UAAAA--GAG AA-AAG-UAU 2941 (-AUAA)GUA CU-aa-uuua aau--- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-u -uaaa-uuac aAUUU--UA- UU-AG(-GCU 3481 AAG)CUAAUA AA-AU----- uuaaaa(gaa -aau)ugu-u aacc------ -------uuu 3541 aauu------ ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->aaugu-a agc(uuaaua 3781 gu-a)-gcua -ucau|a(u- ua)a|ua--g u(--ucuuua )ac|-aaa-- ------<--u 3841 aaaaucaaaa auuauaccua auuucuuuuu ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aau aUCUU-UU|- cuuauuuaa- ---------- 4501 ---------- ---------- (-------)< aauuuaaaaa c--------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -uuaaauuag uuUAUGU-UA 4681 AA|AUGAGUA -uuaa-aa-- u--------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |---uauu-a u--aaAUGUA -AAAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------u ucUAGCCC|C GC---CUG-U UU(AUCAA)A AA-CAUC-GC 6841 UCUUUG|A-- ---------- ---------- (-aaauuau- ------)--- ---------- 6901 ------UAA- UAA-AGAGUC GUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auu)------ ---------- ---------| 7141 ----UUA-AA C-|GG-C|-C -GCAGU-(AC -CCUG)ACUG UG|C(UAA)- GG-UAGCAUA 7201 AUA-AC-U-U |GUUUUU(-U AAUU-)GAAA GC|UU-GUAU GAAUGGCUUG A-CGUGGGCA 7261 AG-------- ---------- -------ACU GUCUCUAUUA CAUU-aa-au ----aa-aaA 7321 UU|A|AUUUU UA-AG(U-GA AGAAG)CUUA AAU----AAU CUCAAAAGAC GAAAAG-ACC 7381 CUAUCG-|-A GCUUU--AAA UU|-ua--ug uau--aaa-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uaaaau cuuuuagaaa aacaa-a--- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --auu-u-au -auc--C-AU UUUUAGUUG( 8161 GGG)CG-AC- A|AAAGAA(- --------ca aa-uaaagc- )UUCU-UU|U |u|auu--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- --------au gua------- ---(aauu-- -)-------- ----uauaaa 8881 u|---uu-au aGAGC-cau- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa uu)--|---- 9001 augAUUAAA- |AGA-AAAAG CUACCG|UAG G|GAUAACAG |CaGUu-A-U UUUUUCAGAG 9061 AG(U--CCUA )AUCGAAGAA --AAAGUUUG CG-ACCUCGA UGUU|GG--A U|U|AAAGU| 9121 AA-CU-UUUA AG-UG(--CA -GA)AGCUUA AAAUaAGU|G GGUC(UGUUC )GACCC-UUA 9181 A--ACCUUU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU AA)GCCAGGU UGGUUUCUAU 9241 CU|UUGAG-- --|-|<---- ---------- ---------- ---------- -cuaauuau- 9301 >--------- ---------- --u-uau-GU UU--(UAGU- AC(-GAAA)G GACC-)AAAC 9361 a--ua-<--- ---------- ---------- -------->a caaa------ ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----uaa-> 9541 ---------- ---------- ------uuug cccacuau~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.palud 10775 bp RNA RNA 22-JAN-1997 DEFINITION Paracrostoma paludiformis subsp. was Brotia. ACCESSION No information KEYWORDS No information. SOURCE Paracrostoma paludiformis subsp. was Brotia. ORGANISM Paracrostoma paludiformis. REFERENCE 1 (bases 1 to 15532) AUTHORS Wally Holznagel, Chuck Lydeard JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF101008 BASE COUNT 490 a 194 c 254 g 421 t 9416 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~uuaagaaca ugaauu---- -----uuaau 301 |acu--aaa| uga------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |uuuuauuuu 841 uga(agca)u caaaaag--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |----ccua- -guaa-u(-g gaga)aagaa -acuuggug- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --ugcuaaga aaga-aga-- ----guacu( -gcaa-)agg ---aau-au- 1681 uguu------ ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---aauua-a g-caua gcagcua--- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----aaga- 2041 --)------- ----uagc-G UACUUU(UU- GCAUC)ACGG |UUU-AGCAA GA--gaauau 2101 cga------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agcu->---- --(------) ---------- ---------- -------ucg 2701 -ug-cuCUCG AA-AACUG-G UG-AGCUAUU CUU-UUU-c- aagu------ ---------- 2761 -(-------- ---------- ---------- ---------- ----uuua-) ---------- 2821 -gcuuuuu-a cuaA-AAGU( GUAGCAA-A) ACUU-Ugguu --aaaAAAA- AGGAUAG-AU 2881 AU(G-AGAU) Uuu-aucc-g c-ACCGGU-G AUAGCU-AGU Ucccu--uag aa-AAG-CAU 2941 (-AGAA)GUG CU-AA-agua aaga-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------uu-u -uaca-uuau aGUUU--AU- UA-AG(-GAU 3481 AAG)CUUAAU AA-AA----g uacagg(aaa -aag)aca-u auacu----- --uuaauggg 3541 u--------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uacuu-g ggc(uugaaa 3781 uu-a)-gcca -uuau|a(a- cg)-|aaauu u(--guuaua )aa|-aua-- ------<--a 3841 uucuuu---- -caauuaaga ggauuccuau guuuuuguuc ugcucg---- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aca aUAAG-GG|- UA-aaa-agu ---------- 4501 ---------- ---------- (-------)< aaaacuaaua a--------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| gcucaauuua uuUAUGC-UA 4681 AA|AUGAGUA -UUUu-cac- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |------u-u a--aaaUAAA -AAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------- uuuuacnu|c gC---CUG-U UU(AUCAA)A AA-CAUG-GC 6841 UCUUUG|Uug ---------- ---------- (-uuu----- ------)--- ---------- 6901 ----uaAUA- UAA-AGAGUC AGGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aac)------ ---------- ---------| 7141 ---UUUU-AA C-|GG-C|-C -GCGGU-(AC -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GCCUUA(-U AAUU-)GAAG GC|UU-GUAU GAAUGGUUCA A-CGAAAGCA 7261 CU-------- ---------- -------GCU GUCUCCUUUU UAau-ag-a- ----UAGAAU 7321 UU|G|ACUUC UA-GG(U-GA AGAGG)CCUA Gau----auA AUUGAAAGAC AAAAAG-ACC 7381 CUGUCG-|-A GCUUU-aaaa gu|-ca--ag uua--gaaa| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uacuua uaaaauaauu uagau-cuag 7561 ca-------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---cu-a-ac -ugu--u-cu uuUUGGUUG( 8161 GGG)CG-AC- C|AAGGAA(- --------ca au-aaaagc- )UUCC-UU|u |u|cua--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------a uu-------- ---(uaac-- -)-------- -----uuaua 8881 g|---gu-ac UGAUC-cagc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aua aa)--|---g 9001 cugAUUGAA- |aaa-AUUAG UUACCG|CAG G|GAUAACAG |C-AUA-A-U CUCUCUUGAG 9061 AG(A--CCAA )AUCGAAAGG --GGGGGUUG UG-ACCUCGA UGUU|GG--A C|U|AGAAU| 9121 GU-CC-UAAA GA-UG(--CA -GA)AGUCUU UAAA-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AAUUCU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU GA)GCCAGGU CAGUUUCUAU 9241 CU|UCAAU-- --|-|<---- ---------- ---------- ---------- ---uauuag- 9301 >--------- ---------- --u-uua-au uu--(UAGU- AC(-GAAA)G GAUC-)ggau 9361 u--aa-<--- ---------- ---------- -------->a gaaa------ ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----uua-> 9541 ---------- ---------- ------uuuu gaa------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.lacer 10775 bp RNA RNA 22-JAN-1997 DEFINITION Cacozeliana lacertina. ACCESSION No information KEYWORDS No information. SOURCE Cacozeliana lacertina. ORGANISM Cacozeliana lacertina. REFERENCE 1 (bases 1 to 15532) AUTHORS Charles Lydeard, Wallace Holznagel JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF101007 BASE COUNT 465 a 213 c 276 g 388 t 9433 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~auaug g--------- ---cugaauu 301 |acu--ugu| uaa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |--------- 841 uga(aaca)u cuauugu--- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |----cuua- -guaa-a(-g gcga)aagaa -aggaaaauu 961 aau----<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- -auu-aaa-- ----guacc( -gaga-)ggg ---aacaau- 1681 aaaag----- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----cuu-c u-aaaa acaACU---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----aaau- 2041 --)------- -----AGU-G UACUUU(UC- GCAUC)ACGG |CCU-AGCAA GA-----gua 2101 aa-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------auu ugaa->---- --(------) ---------- ---------- --------uu 2701 aacuuuCUCG AA-AGCCG-G CG-AGCUAUC UUU-UUC-u- -ggu------ ---------- 2761 -(-------- ---------- ---------- --uuuuuaga acauuuau-) ---------- 2821 -gcu-----a uuaA-AAAU( GUGGCAA-A) AUUU-Uaaua --aaaGGAA- AAGAUAG-CU 2881 GU(A-AUAC) GCU-uuuc-g C-GCUGGU-G AUAGCU-AGU UCUUC--CAA AA-AGG-UAU 2941 (-AUAA)GUG CC-GA-ggc- gagu-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------cu-c -agcc--uaa aaAGA--CU- UA-AG(-GAU 3481 AAG)CUUAAG UC-UA----- -aaacg(gaa -aau)agu-a gug------- ---uuauuaa 3541 cuc------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->aaugu-a ggc(uugaaa 3781 cu-a)-gcca -gcau|a(u- -a)-|aaguc u(--guuaua )ag|-aua-- ------<--g 3841 uucuau---- --aagaaaaa agauuuauuu acucaccucu ccguaaa--- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------aga aUGGA-AG|- ua-uaguuuu ----u----- 4501 ---------- ---------- (aauau--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- --------a| aaaacuuaug cuAAUGC-UA 4681 GG|AUGAGUA -UUUu----- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |----uuu-u a--aauUAGG -AAGA-AGGA ACUCGGCAAC ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a auaugccu|c gC---CUG-U UU(AGCAA)A AA-CAUG-GC 6841 UCUUUG|A-- ---------- ---------- (-aaaaaac- ------)--- ---------- 6901 ------UAA- UAA-AGAGUC GGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- agu)------ ---------- ---------| 7141 ----UUU-AA C-|GG-C|-C -GCGGU-(AC -UCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GCCUUA(-U AAUU-)GAAG GC|UG-GUAU GAAUGGUUUG A-CGAGGGCA 7261 UA-------- ---------- -------ACU GUCUCCUUCC UAau-ua-u- ----UAGAAU 7321 UU|G|ACCUG UG-GG(U-GA AGAGG)CCCA Uau----aaA ACUGAAGGAC GAGAAG-ACC 7381 CUGUCG-|-A GCUUU--aga ag|----aaa gua--g---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gcuaaa auauauaagu aacuauaaag 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---cu-a-cu cuu---a-uu caUUGGUUG( 8161 GGG)CG-AC- A|AGGGAA(- --------ca au-agaagc- )UUCC-CU|u |a|aua--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- --------aa u--------- ---(aaac-- -)-------- -----auaua 8881 u|---gu-aa gGAUC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------a uu)--|---c 9001 cugAUUACA- |aaa-AUUAG UUACCG|CAG G|GAUAACAG |C-AUA-A-U CUUUUUUGAG 9061 AG(A--CCUU )AUCGAAAAG --GGGGGUUG UG-ACCUCGA UGUU|GG--A C|U|AGGAU| 9121 AU-CC-CGAA GG-UG(--CA -GA)AGCCUU CGAU-GGU|U GGUC(UGUUC )GACCA-UUA 9181 A--AAUCCU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU GA)GCCAGGU CAGUUUCUAU 9241 CC|UCAGU-- --|-|<---- ---------- ---------- ---------- ---uuuuua- 9301 >--------- ---------- --c-uca-gg cc--(UAGU- AC(-GAAA)G GAUC-)gggc 9361 u--gg-<--- ---------- ---------- -------->g gaaa------ ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----aaa-> 9541 ---------- ---------- ------uuuc uau------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.turri 10775 bp RNA RNA 11-JAN-191 DEFINITION Albinaria turrita. ACCESSION No information KEYWORDS No information. SOURCE Albinaria turrita. ORGANISM Albinaria turrita. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X71394,X71393 LOCUS MTATSEGI 747 bp DNA INV 04-MAY-1993 DEFINITION A.turrita mitochondrial DNA, segment I ACCESSION X71393 KEYWORDS COI gene; cytochrome oxidase subunit I; large subunit ribosomal RNA; lrRNA gene. SOURCE Albinaria turrita ORGANISM Albinaria turrita Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Mesurethra; Clausilacea; Clausiliidae. REFERENCE 1 (bases 1 to 747) AUTHORS Rodakis,G.C. TITLE Direct Submission JOURNAL Submitted (08-APR-1993) G.C. Rodakis, University of Athens, Dept of Biochemistry, Cell & Molecular Biology & Genetics, Athens 15701, GREECE STANDARD full automatic REFERENCE 2 (bases 1 to 747) AUTHORS Lecanidou,R., Douris,V. and Rodakis,G.C. JOURNAL Unpublished STANDARD full automatic COMMENT NCBI gi: 297162 FEATURES Location/Qualifiers source 1..747 /organism="Albinaria turrita" /chromosome="mtDNA segment I" CDS <1..589 /codon_start=2 /gene="COI" /product="cytochrome oxidase, subunit I" /note="4 stops when translation attempted, frame 2, code 0" CDS 589..>747 /gene="lrRNA" /product="large subunit ribosomal RNA" /note="putative 5'end; 1 stop when translation attempted, frame 1, code 0" BASE COUNT 223 a 104 c 120 g 300 t ORIGIN LOCUS MTATSEGII 1410 bp DNA INV 04-MAY-1993 DEFINITION A.turrita mitochondrial DNA, segment II ACCESSION X71394 KEYWORDS large subunit ribosomal RNA; lrRNA gene; ND6 gene; transfer RNA-Ala; transfer RNA-Leu-cun; transfer RNA-Pro. SOURCE Albinaria turrita ORGANISM Albinaria turrita Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Mesurethra; Clausilacea; Clausiliidae. REFERENCE 1 (bases 1 to 1410) AUTHORS Rodakis,G.C. TITLE Direct Submission JOURNAL Submitted (08-APR-1993) G.C. Rodakis, University of Athens, Dept of Biochemistry, Cell & Molecular Biology & Genetics, Athens 15701, GREECE STANDARD full automatic REFERENCE 2 (bases 1 to 1410) AUTHORS Lecanidou,R., Douris,V. and Rodakis,G.C. JOURNAL Unpublished STANDARD full automatic COMMENT NCBI gi: 297163 FEATURES Location/Qualifiers source <1..>1410 /organism="Albinaria turrita" /chromosome="mtDNA segment II" tRNA 923..984 /product="transfer RNA-Leu" tRNA 985..1049 /product="transfer RNA-Pro" tRNA 1049..1113 /product="transfer RNA-Ala" CDS <1..922 /gene="lrRNA" /product="large subunit ribosomal RNA" /note="putative 3'end; 24 stops when translation attempted, frame 3, code 0" CDS 1121..>1410 /gene="ND6" /note="NCBI gi: 297164" /codon_start=1 /translation="MISLSFILGLIFPVFFIFTLANPISLLLLLLIIRLCAVLWLGSI IRSWFAYILFIVYIGGILVLFIYVCIIRSNYITGLYKYKTLLYVGIVVALIS" BASE COUNT 475 a 167 c 237 g 531 t ORIGIN BASE COUNT 388 a 139 c 167 g 383 t 9698 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~auacuc a--------- -------uuu 301 |aca--aug| agc------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- --aaguucc( uaauu-)gga ---a---gu- 1681 uuuauu---- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- -------au- 1801 auuacaauug cauuacau-u g-ugua ugagauu-ac u-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auauca- 2041 --)------- aguaaauc-G UACCUU(UU- GCAUA)AUGG |UGA-UACUA AAcuac-uau 2101 aa-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- auau->---- --(------) ---------- ---------- ---------u 2701 uuaacUCCCG AA-AAUAA-A AG-AUCUAAU UUA-CCA-au augauauuag a--------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 -aaauuaa-g uG-C-UAUU( GUGGCAU-A) ACUA-GCauu --aGAUGGA- AAAUUAG-UA 2881 GU(G-AAAC) GCU-cuca-c --UUUUAUUG AUAACU-GGA UAUAG--AAU AA-AUA-UAU 2941 (UAAGU)AUA AA-aa----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- -------cca -uucu--ug- gaagc(-gau 3481 aag)guuaca ag-aa----a ugaaau(uau -cau)guu-g uaauauccau cacuauuuaa 3541 ua-------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->auauu-- agu(ugguga 3781 ua-u)-auuu -uaua|c(a- ca)-|ua-aa u(--uuauua )ac|-uaa-- ------<--a 3841 uuc-----au uuauau---- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------ucu auucu-ac|- ua-uguauu- ---------- 4501 ---------- ---------- (ucauu--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -aguguauuG AUAAUGU-AU 4681 CA|AUUAGUA -aaau-uu-- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |--auauu-u a--aaAUGUU -GAUA-AGGA ACUCGACAAG ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )------aua aaUGUUUA|C GA---CUG-U UU(AACAA)A AA-CAUA-GC 6841 CAUUAA|--- ---------- ---------- (-gagaug-- ------)--- ---------- 6901 ---------- UUU-AU-GUG UUAUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GC|U GA-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aac)------ ---------- ---------| 7141 ---uu-U-AA C-|GGaC|-C GGCAGU-(AC -CUUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GACUUU(-U AAUU-)GGAG CC|UG-GAAU GAAUGAAAUA A-CG-UAGAC 7261 AG-------- ---------- -------CUU GUCUCAUUAA UAGu-ac-uc ----UU-AAA 7321 UU|G|CUAUA GG-AG(U-GA AAAUA)CUCU UUAa---uuu aAAAAUAGAC GAGAAG-ACC 7381 CUU-AG-|-A AUUUU-GAAA A-|--u--gu aaa--agg-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uauu-- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ucuu-u-ua -u----a-aa UUUUUGUUG( 8161 GGG)GA-AC- A|AUAUUU(- --------ca ug---uaau- )AAAU-AU|u |a|-----|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 u|---au-ag aauga-uagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------uc ga)--|---u 9001 uuaAUAAUUA |uag-UUAAA UUACCU|AAG G|GAUAACAG |C-AUA-A-u uu-------- 9061 --(uauuag- )--------- ---aagcUUG UG-ACCUCGA UGUU|GG--A C|U|AGGUA| 9121 CU-AU-UAAG GC-UA(--AU -CG)UUUUAA UAUA-AUA|U GUUC(UGUUC )GAAC--UUU 9181 A--CUACCU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU AA)-cgAGGU CAGUUUCUAU 9241 CU|UUUUA-- --|-|<---- ---------- ---------- ---------- ------uuu- 9301 >--------- ---------- --g-cuu-ac aa--(UAGU- AC(-GAAA)G GACC-)cugu 9361 a--ag-<--- ---------- ---------- -------->c acuuu----- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----ucu-> 9541 ---------- ---------- -----aaagu aua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.aureo 10775 bp RNA RNA 22-DEC-1998 DEFINITION Mitochondrion Mandarina aureola.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mandarina aureola. ORGANISM Mitochondrion Mandarina aureola. REFERENCE 1 (bases 1 to 15532) AUTHORS Chiba,S. TITLE islands: evidences from mitochondrial DNA sequences Accelerated evolution of land snails Mandarina in oceanic JOURNAL Evolution (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF095823 LOCUS AF095823 1027 bp DNA INV 22-DEC-1998 DEFINITION Mandarina aureola 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, complete sequence. ACCESSION AF095823 NID g3747122 KEYWORDS . SOURCE Mandarina aureola. ORGANISM Mitochondrion Mandarina aureola Eukaryota; Metazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Camaenidae; Mandarina. REFERENCE 1 (bases 1 to 1027) AUTHORS Chiba,S. TITLE Accelerated evolution of land snails Mandarina in oceanic islands: evidences from mitochondrial DNA sequences JOURNAL Evolution (1999) In press REFERENCE 2 (bases 1 to 1027) AUTHORS Chiba,S. TITLE Direct Submission JOURNAL Submitted (30-SEP-1998) Shizuoka University, Institute of Biology and Earth Sciences, 836 Oya, Shizuoka, Japan FEATURES Location/Qualifiers source 1..1027 /organism="Mandarina aureola" /mitochondrion /db_xref="taxon:83228" rRNA 1..1027 /product="16S ribosomal RNA" BASE COUNT 393 a 99 c 137 g 398 t BASE COUNT 393 a 99 c 137 g 398 t 9748 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ua u--------- -------uua 301 -agu--ugu- au-------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------a uaau-aua-- ---uuauua- --aaa--uaa ---uag-uu- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 --------ua guaauaau-a u-<------- ---------- ---------- ---------- 1861 ----->--ca uaauauu--- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-uuaauau- 2041 --)------- ----agua-A UACCUU(UU- GCAUA)AUGG |AUU-AAUUA UA-----au- 2101 uu-uaua--- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- auau->---- --(------) ---------- ---------- ---------u 2701 cauucUCACG AA-GUAGUUU UG-AGCUAAA UAU-AUU-ua uaau------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auua-) ---------- 2821 -guuauuc-A UG-A-AGGU( GUUGUAA-A) AUCU-UUAUu u-aaaauUA- UAUUUAG-GG 2881 GU(G-AUAG) GCC-uuuc-a a-AAACUAAG AUAUCU-UGA AUCUA--AUU AA-AAG-UAU 2941 (guagu)aca auuaa----- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- -------cac aacua--uu- aa-gu(-gau 3481 uag)gcuuua ua-ga----a uuauua(-ac -uua)uaa-- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---gauuu-- uau(uuacua 3781 uaau)-uuaa -uaau|u(a- ag)-|ua-ca u(--aaauau )au|-uaa-- ------<-ua 3841 uuc-----au auauuau--- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- -aguu-ua|- uaaaagag-- ---------- 4501 ---------- ---------- (-------)< uaauuagaua gauuuaaguu cauau----- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| --uucuuauA AUAAUGU-UA 4681 AU|AUUAGUA -UUAA----- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |-----gu-u u--auaUUUA -UAUG-AUGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------aa uacUUUCU|C AA---CUG-U UU(AUCAA)A AA-CAUA-AC 6841 UAUGUG|--- ---------- ---------- (-auugaa-- ------)--- ---------- 6901 ---------- UAC-AUAGCG GUUUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------uu aau)------ ---------- ---------| 7141 ----uua-AA U-|AG-C|-C -GCAGU-(AU -ACUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AA-U-U |GACUUA(-U AAUU-)GAAG UC|UA-GAAU GAAUGAAAUG A-UG-GGAAG 7261 CU-------- ---------- -------ACU AUAUUUUGUA AAAu-aua-- ----uauaaU 7321 UU|A|UUUAU GA-AG(U-GA AAAUA)CUUC UAU----AAA UAUAAUAGAC GAGAAG-ACC 7381 CUA-GA-|-A AUUUU-uaau aa|--u--ua aaa--uuau| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----a-u-uu -gaga-a-au UUUUUGUUG( 8161 GGG)CG-AC- A|AAGUAG(- --------ca ua--uuaac- )CUAC-UU|a |a|au---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ------uaaa ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --uuugcacu uu)--|---u 9001 uuaauuguu- |uga-AAAAA UUACUC|UAG G|GAUAACAG |C-AUA-A-u au-------- 9061 --(u--uaa- )--------- ---aaguUUA UG-ACCUCGA UGUU|GG--A U|U|AGGAA| 9121 AU-AA-UAAc uu-aa(--aa -gg)---uuu uuua-uau|U GCUC(UGUUC )GAGCA--UU 9181 A--ACUCCU- --ACAUGAUC UGAGUUCAGA CC|GG-C(GU AA)G--AGGU CAGUUUCUAU 9241 CU|UUAAA-- --|-|<---- ---------- ---------- ---------- -----auuu- 9301 >--------- ---------- --a-ucu-uu aa--(UAGU- AC(-GAAA)G GAAU-)uuac 9361 c--ga-~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (7)-Pseudo 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (8)-Nemato 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.suum 10775 bp RNA RNA 11-JAN-191 DEFINITION Ascaris suum. ACCESSION No information KEYWORDS No information. SOURCE Ascaris suum. ORGANISM Ascaris suum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X54253 ID MTAS standard; DNA; ORG; 14284 BP. AC X54253; DT 30-SEP-1991 (Rel. 29, Last updated, Version 2) DT 30-SEP-1991 (Rel. 29, Created) DE A. suum complete mitochondrial genome KW ATPase 6; COI gene; COII gene; COIII gene; cytb gene; KW large ribosomal RNA; ND1 gene; ND2 gene; ND3 gene; ND4 gene; KW ND4L gene; ND5 gene; ND6 gene; small ribosomal RNA; tRNA-Ala; KW tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; KW tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; KW tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; KW tRNA-Val. OS Ascaris suum OC Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Rhabditia; OC Ascaridida; Ascaridina; Ascaridoidea; Ascarididae. OG Mitochondrion RN [1] RP 1-14284 RA Wolstenholme D.R.; RL Submitted (09-AUG-1990) on tape to the EMBL Data Library by: RL Wolstenholme D.R., Biology Department, University of Utah, Salt RL Lake City, UT 84112, USA. RN [2] RA Okimoto R., MacFarlane J.L., Wolstenholme D.R.; RT "Evidence for the frequent use of TTG as the translation RT initiation codon of mitochondrial protein genes in the nematodes, RT Ascaris suum and Caenorhabditis elegans"; RL Nucleic Acids Res. 18:6113-6118(1990). RN [3] RA Okimoto R., MacFarlane J.L., Clary D.O., Wolstenholme D.R.; RT "The mitochondrial genomes of two nematodes, Caenorhabditis RT elegans and Ascaris suum"; RL Unpublished. CC See also X54252 for C. elegans mitochondrial genome. FT rRNA 901..1601 FT /note="s-rRNA" FT rRNA 11346..12305 FT /note="l-rRNA" SQ Sequence 14284 BP; 3168 A; 1095 C; 2909 G; 7111 T; 1 other; BASE COUNT 265 a 60 c 163 g 472 t 9815 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~uag uauuuuuuuu uucauuuuu> (--------- 2041 --)------- ---------- -uagua(UU- GUGU-)ACUa |UUU-AGGGA AAa----ua- 2101 acau------ ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------uug uuu-->---- --(------) ---------- ---------- -------aug 2701 uua--aAUAG AA-AGAAA-A GG-uagaaga uua-aua--- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- -----agu-) ---------- 2821 ---------- uu-a-uuu-( guuuc-a-c) -aaa-uaaa- --au-uauu- uguuuuggug 2881 uu(g-auau) guc-ga---- --CUUUUUUG UUAUCU-GUU Uauuu--uu- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< -uuuuauuag 3121 aaag-----u uauaugguuu guuugua--- ---------- ---------- ---------- 3181 ----uguu-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- -----(---- 3481 ---)------ ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------agga a<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->guuaa-g auu(uu-gua 3781 gu--)-guuc -uuuu|-(u- uu)-|gu--g u(--uuuaua )ac|-guuu- ucuu------ 3841 ---uuuuuuu aauug----- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------gau gguuu-ug|- uu-uuuauua a--------- 4501 ---------- ---------- (uuuu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- --------u| uaauaaauuu auAAUUU-UG 4681 AA|UUUAGUA -GUUU-UGU- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---G CU-CU-AU|G U--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)------ ---------- ---------| 7141 ----AUA-AA U-|GG-C|-A -GUCUU-(AG -CGUG)AGGA CA|U(UAA)- GG-UAGCAAA 7201 AUA-AU-U-U |GUGCUU(-U UAAU-)GGGU UC|UA-GUAU GAAUGGGGUU AgUG-GCUAA 7261 Uu-------- ---------- -------uuu uacuuuuauu uu-u------ ----AUGAAU 7321 UA|G|UUUUG UG-UU(U-AA GAAAU)AAUG GUU----GAU AUUACACAAA GAUAAG-UCU 7381 UCG-GA-|-A AUUUU--UUU AU|--U--AA Aua--uuu-| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -auuu-u-UU -UA---A-UA UGUUUUCUA( 8161 GGG)UA-GA- A|------(- ---------- ---------- )-------|- |-|-----|< 8221 uguuuuguaa cuuuuuuuac uaau------ ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 ---uuuaau- |uua-AAAAA UUACUU|CGG A|GUUAACAG |A-AAGuC-a UAUCugAUUU 9061 AG(U--UCUU )AUAAUAauG --AUAaGU-U UU-ACAUCGA UGUU|GU--A U|U|UUAGU| 9121 -u-cu-UAAA Gg-ga(-gga -ga)ggaUUU UAgg-uuu|U AGAC(UGUUC )UUCUA-UUA 9181 UuaAACUAA- --ACGUGAUA UUAGUUUAAU UC|AU-C(GU GA)GAUAGAA UUGUUUAUCU 9241 UG|GUAAU-G UC|u|<---- ---------- ---------- ---------- -uaauuuua- 9301 >--------- ---------- --a-UUA-CU GA--(AAGU- AC(-GAAA)G GAAA-)UUUG 9361 U--UG-<--- ---------- ---------- -------->g agu------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uugaua-> 9541 ---------- ---------- -------acu ---------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|-- 9961 ---(------ ---)------ ---------- ---------- ---------- ---------- 10021 -|-------- ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---------- ---------- ---------- --------(- ---------- 10141 ---------- ---------- -)-------- ---------- ---------- ---------- 10201 ---------- -|-|------ ---------- ---------- ---------- ---------- 10261 ---------- ---------- ---------- ---------- ---------- ---------- 10321 --------|- uuuugaaagu guuaguacuu uuu~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.elega 10775 bp RNA RNA 11-JAN-191 DEFINITION Caenorhabditis elegans. ACCESSION No information KEYWORDS No information. SOURCE Caenorhabditis elegans. ORGANISM Caenorhabditis elegans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X54252 ID MTCE standard; DNA; ORG; 13794 BP. AC X54252; DT 30-SEP-1991 (Rel. 29, Last updated, Version 1) DT 30-SEP-1991 (Rel. 29, Created) DE C. elegans complete mitochondrial genome KW ATPase 6; COI gene; COII gene; COIII gene; cytb gene; KW large ribosomal RNA; ND1 gene; ND2 gene; ND3 gene; ND4 gene; KW ND4L gene; ND5 gene; ND6 gene; small ribosomal RNA; tRNA-Ala; KW tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; KW tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; KW tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; KW tRNA-Val. OS Caenorhabditis elegans (nematode) OC Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Spiruria; OC Spirurida; Spirurina; Filarioidea; Filariidae. OG Mitochondrion RN [1] RP 1-13794 RA Wolstenholme D.R.; RL Wolstenholme D.R., Biology Department, University of Utah, Salt RL Lake City, UT 84112, USA. RA Okimoto R., MacFarlane J.L., Wolstenholme D.R.; RT "Evidence for the frequent use of TTG as the translation RT initiation codon of mitochondrial protein genes in the nematodes, RT Ascaris suum and Caenorhabditis elegans"; RL Nucleic Acids Res. 18:6113-6118(1990). CC See also X54253 for A. suum mitochondrial genome. SQ Sequence 13794 BP; 4335 A; 1225 C; 2055 G; 6179 T; 0 other; FT rRNA 898..1594 FT /note="s-rRNA" FT rRNA 10403..11355 FT /note="l-rRNA" BASE COUNT 348 a 72 c 128 g 405 t 9822 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~uaa auuuuacuug uuuaaauau> (--------- 2041 --)------- ---------- -uggua(UU- GCAU-)ACUa |UUA-CAAUA AAa----uu- 2101 ucau------ ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------g uua-->---- --(------) ---------- ---------- -------aug 2701 aaa--aAUAG AA-ACAAA-G GG-uagagua aau-auu--- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- -----agu-) ---------- 2821 ---------- uu-u-auu-( guuuc-a-u) -acu-aaaa- --au-uaua- uuuauuagag 2881 uu(g-auau) guc-ga---- --CCUUUGUG AUAACU-GUU Uuuau--uu- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< -uuauauuag 3121 aaaa-----u uauauauuau auaauua--- ---------- ---------- ---------- 3181 ----uuuu-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- -----(---- 3481 ---)------ ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------agga a<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->auuua-a aau(uu-gaa 3781 gu--)-guuu -uaaa|-(u- uu)-|au--g u(--uuuaca )ac|-auuu- uccu------ 3841 ---aauuuua uuuaag---- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------uuu aauuu-uu|- aa-uuuaaua a--------- 4501 ---------- ---------- (aguu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- --------u| uauuaaauaa auAAUUU-GU 4681 AA|AUUAGUA -AAUU-UUA- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---G CC-CU-AU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u au-)------ ---------- ---------| 7141 ----UUA-AA U-|GG-C|-A -GUCUU-(AG -CGUG)AGGA CA|U(UAA)- GG-UAGCAAA 7201 AUA-AU-U-U |GUGCUU(-U UAUU-)GAGU UC|CA-GUAU GAAUGAAGUU AuUG-GUUAG 7261 Uu-------- ---------- -------cua uuuauguuuu augu------ ----UUGAAU 7321 UU|A|AUUUU UA-UU(U-AA GAAAA)AAUA AAU----AUA UUUAUACAAA GAUAAG-UCU 7381 UCG-GA-|-A AUUCU--GUU AU|--U--AC Aca--auu-| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -aauu-g-UG -UA---A-UA AAUUUUCUA( 8161 GGG)CA-GA- A|------(- ---------- ---------- )-------|- |-|-----|< 8221 uauuauauaa uaguauuuca cuaua----- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 ---uuuaau- |uua-AAGAA UUACUC|CGG A|GUUAACAG |A-AAAuC-a UACCuaAUCU 9061 AG(U--ACUU )AUAGUAa-G --GUAaGU-U UU-ACAUCGA UGUU|GU--A U|U|CAGAU| 9121 -a-au-CUAA Ga-ga(-gga -ga)aggCUU AGua-guu|U AGAC(UGUUC )UUCUA-UUA 9181 AuuAAUCUG- --ACGUGAUA UUAGUUUAAU UC|AU-U(GU GA)GAUAGAA UUGUUUAUCU 9241 UG|AUAAA-U AU|u|<---- ---------- ---------- ---------- -uauauuua- 9301 >--------- ---------- ----AUA-CA UU--(UAGU- AC(-GAAA)G GAAC-)AUUG 9361 U--AA-<--- ---------- ---------- -------->a agu------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uu-uaa-> 9541 ---------- ---------- -------acu ---------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|-- 9961 ---(------ ---)------ ---------- ---------- ---------- ---------- 10021 -|-------- ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---------- ---------- ---------- --------(- ---------- 10141 ---------- ---------- -)-------- ---------- ---------- ---------- 10201 ---------- -|-|------ ---------- ---------- ---------- ---------- 10261 ---------- ---------- ---------- ---------- ---------- ---------- 10321 --------|u uaaagauuuu gaaau--cuu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.hapla 10775 bp RNA RNA 01-MAY-1996 DEFINITION Mitochondrion Meloidogyne hapla.; 16S mitochondrial ribosomal RNA; 16S ribosomal RNA; cytochrome b; transfer RNA-His. ACCESSION L76262 KEYWORDS 16S mitochondrial ribosomal RNA; 16S ribosomal RNA; cytochrome b; transfer RNA-His. SOURCE Mitochondrion Meloidogyne hapla. ORGANISM Mitochondrion Meloidogyne hapla. REFERENCE 1 (bases 1 to 1900) AUTHORS Hugall,A.F., Stanton,J. and Moritz,C. TITLE nematode Meloidogyne hapla Evolution of the AT rich mitochondrial DNA of the root knot JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L76262 BclI fragment Mitochondrial DNA using Drosophila genetic code . NCBI gi: 1294783 BASE COUNT 343 a 34 c 91 g 414 t 9893 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~uug auuuuuuuaa gaauuauguu uaagcuaaua auuucuagu> (--------- 2041 --)------- ---------- ------(--- -----)---- |gaa-uuuuu uau----ugu 2101 gauu------ ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------aa aa--->---- --(------) ---------- ---------- -------agu 2701 uaau-cagc- ua-uuuua-u u------uug aaa-uu-au- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 ---------- uuuu-uauu( GUUGAAA-A) aauu-aaua- --au--aau- uuauuguuaa 2881 ua-a-aaau- uaa-aa---- --uuuauaau auuuuauuuu uauuuuuuag uu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< -uuaaauaaa 3121 aaaa-----a uaaaauuuau auauaua--- ---------- ---------- ---------- 3181 ----aaaa-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- -----(---- 3481 ---)------ ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- -----uuuug u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uauaa-a uua(ua-aua 3781 gu--)-uuau -uuau|-(u- ug)u|uu--u u(--uauaau )aa|--aua- auaggauuu- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------uuu uuuau-ua|- uu-uuauaaa a--a------ 4501 ---------- ---------- -aaaa----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| uaauuuaauu auaauu--au 4681 u-|AAAAGUA -AUUU-UGU- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---G CU-CA-GU|G ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auu)------ ---------- ---------| 7141 -----UA-AA U-|AG-C|-A -CUUUU-(AG -CGUG)AUUA GU|C(AAA)- GG-UAGCAAG 7201 GUA-AU-U-U |GUUUUU(-U UAUU-)GGAU UC|UG-GUAU GAACGGUUUU U-ug-guauu 7261 uu-------- ---------- --------uu cuauuaguaa uaaa------ ----AAGAAU 7321 UU|A|AUAAU UA-UU(U-AA AAAUU)AAUA AUU----auU AUAAAACUAA GAAAAG-UCU 7381 UUA-GA-|-A AUUaa--uu- --|------- ---------| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------- ---------- auUUAAUUA( 8161 GGG)UA-AU- U|------(- ---------- ---------- )-------|- |-|-----|< 8221 aaauaauuau uguuuuuuuc ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- ---------- ---------- ---------- ---------- ---------- 8941 ---------- ---------- ---------- ---------- ---------- -----|---- 9001 -uuugaaau- auug-aaaAA UUUCUC|UAG A|GUUAACAG |G-AAU-A-a aaa------- 9061 --(u-uuaau )--------- --uguuaUUU UU-ACAUCGA UGUU|GU--U U|U|AUUUu| 9121 uu-au-uuaa aa-uu(--CA -GA)aaaauu aaau-uac|a AGAC(UGUUC )UUCUA-a-- 9181 --aaaAAAU- --ACGUGAGA UUAGUUUAAU UC|GU-U(GU AA)AAUAGAG UUGUUUAUCU 9241 AG|UUUAU-A uu|u|<---- ---------- ---------- ---------- -----ugag- 9301 >--------- ---------- --a-AAA-UA AA--(CAGU- AC(-GAAA)G GAUA-)aUUA 9361 U--UU-<--- ---------- ---------- -------->a uaa------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------u uaaauuuu-> 9541 ---------- ---------- -------uua ]~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.javan 10775 bp RNA RNA 01-MAY-1996 DEFINITION Mitochondrion Meloidogyne javanica.; 16S ribosomal RNA; cytochrome b; mitochondrion; transfer RNA-His. ACCESSION L76261 KEYWORDS 16S ribosomal RNA; cytochrome b; mitochondrion; transfer RNA-His. SOURCE Mitochondrion Meloidogyne javanica. ORGANISM Mitochondrion Meloidogyne javanica. REFERENCE 1 (bases 1 to 2212) AUTHORS Hugall,A.F., Stanton,J. and Moritz,C. TITLE nematode Meloidogyne hapla Evolution of the AT rich mitochondrial DNA of the root knot JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L76261 Mitochondrial DNA using Drosophila genetic code. NCBI gi: 1294787 BASE COUNT 365 a 34 c 80 g 401 t 9895 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~uuuaauaa uauuaaaaau aaagcuauua auuucaauu> (--------- 2041 --)------- ---------- ------(--- -----)---- |gaa-uuuuu uau----ugu 2101 gauu------ ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 --------aa aaa-->---- --(------) ---------- ---------- -------agu 2701 uuu--uggcu AA-Auuau-u uu-----uuu aga-uu-au- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 ---------- uuuu-uauu( GUUGAAA-A) aauu-aaaa- --ac-aaau- uguuuuuuac 2881 a--a-uaau- uaa-aa---- -uuuauaaua uuucaauuuu uaauuuuuag uu-uu--aaa 2941 uaaaaauuac aaauaugaaa ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- -aauaaa--- ---------- ---------- ---------- 3181 ----aaaa-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- -----(---- 3481 ---)------ ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- -----uuuug u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uauaa-a uua(aa-uua 3781 au--)-uuau -uuau|-(a- uu)a|aa--a a(--uauuuu )uu|--aua- auuuuaau-- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------uuu uuuua-uu|- uu-uuuaaaa a--a------ 4501 ---------- ---------- -aaaa----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| uaauuuaauu auaauu--au 4681 uu|auuuaaa -uuua-aua- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- -------aaa -uuua-aua- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------a uaaauguu|u uu---uAA-a UU(CUUUG)A Gg-UUUU-GA 6841 ------|--- ---------- ---------- (-uuuuugau uu----)--- ---------- 6901 ---------- -------UUU GUUUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-UU|G U--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aa-)------ ---------- ---------| 7141 -----ag-AA A-|AG-C|-A -CUUUU-(AG -CGUG)AUUG GU|C(AAA)- GG-UAGCGAG 7201 GUA-AU-U-U |GUUUUU(-U UAUU-)GAAU UC|UA-GUAU GAAUGGAUUU U-uu-guuau 7261 ua-------- ---------- -------aau auauugauuu uaaa------ ----aaGAAU 7321 Uu|U|AAAUU UA-UU(U-AA AAAAU)AAUA AAU----aaA AUAAAACUAA GAAAAG-UCU 7381 UUA-GA-|-A AUUUa--uu- --|------- ---------| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------- ---------- auUUAAUUA( 8161 GGG)AA-AU- A|------(- ---------- ---------- )-------|- |-|-----|< 8221 aaauaauuaa uauuuuuuuc uua------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- ---------- ---------- ---------- ---------- ---------- 8941 ---------- ---------- ---------- ---------- ---------- -----|---- 9001 ---aucaaa- -aaa-aaAAA UUUCUC|UAG A|GUUAACAG |A-AAU-A-a aua------- 9061 --(u-uaauu )--------- --uauuaUUU UU-ACAUCGA UGUU|GU--U U|U|AUUUa| 9121 au-au-uaaa aa-ug(--AG -AA)-acuuu ugag-uga|g AGAC(UGUUC )UUCUA-a-- 9181 --aaaAAAU- --ACGUGAAA UUAGUUUAAU UC|GU-U(GU GA)AAUAGAG UUGUUUAUCU 9241 AG|UUUAU-U aa|a|<---- ---------- ---------- ---------- -----uuag- 9301 >--------- ---------- --a-AAA-UA AA--(UAGU- AC(-GAAA)G GAAA-)aUUA 9361 U--UU-<--- ---------- ---------- -------->u aaa------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- --uuaaau-> 9541 ---------- ---------- -------uuu ---------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|-- 9961 ---(------ ---)------ ---------- ---------- ---------- ---------- 10021 -|-------- ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---------- ---------- ---------- --------(- ---------- 10141 ---------- ---------- -)-------- ---------- ---------- ---------- 10201 ---------- -|-|------ ---------- ---------- ---------- ---------- 10261 ---------- ---------- ---------- ---------- ---------- ---------- 10321 --------|- uuaauua]~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.volvu 10775 bp RNA RNA 01-JAN-1998 DEFINITION Mitochondrion Onchocerca volvulus.; . ACCESSION AF015193 KEYWORDS . SOURCE Mitochondrion Onchocerca volvulus. ORGANISM Mitochondrion Onchocerca volvulus. REFERENCE 1 (bases 1 to 13747) AUTHORS Keddie,E.M. and Unnasch,T.R. TITLE volvulus Complete sequence of mitochondrial genome of Onchovcerca JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 13747) AUTHORS Keddie,E.M. and Unnasch,T.R. TITLE Direct Submission JOURNAL Submitted (18-JUL-1997) Geographic Medicine, University of Alabama at Birmingham, BBRB Box 7, Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF015193 BASE COUNT 248 a 57 c 167 g 500 t 9803 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~---<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~uuug uuuuuuaagu uuuauuauu> (--------- 2041 --)------- ---------- -uggua(UU- GCAU-)AUCa |GUA-GAAGU UUU----ua- 2101 ucau------ ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------a gcu-->---- --(------) ---------- ---------- -------aug 2701 agu--aAUAG AAuuAAAA-U GG--uuaaau uga-auu--- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ---------) ---------- 2821 ---------- -u-g-uuuc( uuuuuua-c) gaaa-uuaau a-au-auuu- uuauuuagua 2881 uu(g-auau) aac-g----- --UAUUUUU- AUUUCU-GUU Uauuu--gu- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< -uauuuauag 3121 guua-----a guuauauuau uuuuugu--- ---------- ---------- ---------- 3181 ----uugu-- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- -----(---- 3481 ---)------ ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- -aaauuuuuu a<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->aauu--u uug(uu-guu 3781 guu-)-uuau -aaau|-(g- uu)-|gu--g u(--guuuu- )ac|-auag- auuu------ 3841 --uuauuuuu uuuuu----- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------uuu uuuuu-uu|- uu-uugauua a--------- 4501 ---------- ---------- (uuuu---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- --------u| uaauugauuu auGAUUU-UU 4681 AC|UUUAGUA -AUUU-Uua- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- -------<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---G CU-CU-AU|G A--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uuu)------ ---------- ---------| 7141 ----UUA-AA U-|GG-C|-A -GCCUU-(AG -CGUG)AUGG CA|U(AAA)- AG-UAGCGUA 7201 AGUGAU-U-U |GUUUUU(-U UAAU-)GGUU UC|AA-GUAU GAAUGAAGUU UuUA-GCAGC 7261 uu-------- ---------- -------uuu uauuuacuuu uugu------ ----UUGAAU 7321 UA|U|UUUUU UA-AU(U-AA AAAUU)AUUA GUU----AAG GUAUUACAAA GAUAAG-UCU 7381 UCG-GA-|-A AUUUU--GUU UU|--g--aa ---------| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---------u -uu---U-AA UUUUUUCUU( 8161 GGG)GAuGG- A|------(- ---------- ---------- )-------|- |-|-----|< 8221 uuuuaagaaa guuuuauacu auu------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------- 8881 ---------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 ---guuauu- |auu-AAAAA UUACUC|CGG A|GUUAACAG |G-GCugu-a gacauauaaa 9061 ua(gg-uuuu )uauauuagu --gugcugcG CU-ACAUCGA UGUU|GU--A U|A|UUUUU| 9121 -u-uu-gaua au-gg(-aga -gg)uuuuuu uugu-uuu|G AGAC(UGUUC )UUCUU-GUA 9181 U--AAAAAAu ugACUUGAUA UUAGUUUAGU UC|GU-C(GU GA)GACAGAG CGGUUUAUCU 9241 UG|UGUAU-U UU|u|<---- ---------- ---------- ---------- --ggugcuu- 9301 >--------- ---------- --g-gcg-gU GU--(UAGU- AC(-GAAA)G GAAu-)GCAa 9361 u--gu-<--- ---------- ---------- -------->g ggu------- ---------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- -------uua uauuuaug-> 9541 ---------- ---------- -------acu ---------- ---------- ---------- 9601 ---------- ---------- (--------- -----)---- ---------- ---------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|-- 9961 ---(------ ---)------ ---------- ---------- ---------- ---------- 10021 -|-------- ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---------- ---------- ---------- --------(- ---------- 10141 ---------- ---------- -)-------- ---------- ---------- ---------- 10201 ---------- -|-|------ ---------- ---------- ---------- ---------- 10261 ---------- ---------- ---------- ---------- ---------- ---------- 10321 --------|u uuuuauuuug auggauuuuu u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (6)-Cnidar 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.S.glauc 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Sarcophyton glaucum.; . ACCESSION AF063191 KEYWORDS . SOURCE Mitochondrion Sarcophyton glaucum. ORGANISM Mitochondrion Sarcophyton glaucum. REFERENCE 1 (bases 1 to 6738) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 6738) AUTHORS Pont-Kingdon,G., Okada,N.A., Macfarlane,J.L., Beagley,C.T. , Watkins-Sims,C.D., Cavalier-Smith,T., Clark-Walker,G.D. and Wolstenholme,D.R. TITLE Direct Submission JOURNAL Submitted (05-MAY-1998) Biology, University of Utah, 235 Biology, Salt Lake City, UT 84112, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF063191,AF064823 LOCUS AF064823 11715 bp DNA INV 01-JAN-1999 DEFINITION Sarcophyton glaucum large subunit ribosomal RNA gene, partial sequence; NADH dehydrogenase subunits 2 (ND2), 5 (ND5), and 4 (ND4) genes, complete cds; tRNA-Met gene, complete sequence; cytochrome oxidase subunit III (COIII), ATP synthetase subunit 6 (ATPase 6), ATP synthetase subunit 8 (ATPase 8), cytochrome oxidase subunit II (COII), and cytochrome oxidase subunit I (COI) genes, complete cds; small subunit ribosomal RNA gene, complete sequence; and NADH dehydrogenase subunit 1 (ND1) gene, partial cds, mitochondrial genes for mitochondrial products. ACCESSION AF064823 NID g4091912 KEYWORDS . SOURCE Sarcophyton glaucum. ORGANISM Mitochondrion Sarcophyton glaucum Eukaryota; Metazoa; Cnidaria; Anthozoa; Alcyonaria; Alcyonacea; Alcyoniidae; Sarcophyton. REFERENCE 1 (bases 1 to 11715) AUTHORS Beaton,M.J., Roger,A.J. and Cavalier-Smith,T. TITLE Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: conserved gene order among octocorals JOURNAL J. Mol. Evol. (1998) In press REFERENCE 2 (bases 1 to 11715) AUTHORS Beaton,M.J., Roger,A.J. and Cavalier-Smith,T. TITLE Direct Submission JOURNAL Submitted (12-MAY-1998) Botany, University of British Columbia, 3529-6270 University Blvd., Vancouver, B.C. V6T 1Z4, Canada BASE COUNT 639 a 338 c 449 g 508 t 8841 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ag 301 |ucu--agg| gcc-uguc-g g|ua------ ---------- ---------| -----(---- 361 ---------) -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |uaguu-AAU 841 UGA(AACA)U CUUAAUA--- -gacua---- ---------- ---------- ---ugaggaa 901 uaCAUC(-AA CU)GA-G-AU |UCC-CCuug cGUAG-C(-G GCGA)GCGAU -AGCGGA--- 961 ------------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- -------acc 1621 ---cc-aaua g-acacCUAU AGAG-AA--- ---AGUACC( -GUGA-)GGG ---AAA-G-- 1681 ac-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ----uuagaa uugguu-c-u gaaa------ ---------- ---------- ---------- 1861 ---------- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- -------g-u UACCUU(UU- GCAUA)AUGG |GCC-UGCAA GA-------- 2101 caaaauuugg caa--gcuua a--------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ----auagua aaugaaggcg 2581 ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ------guga aagca>agag --(aaaa--) ---cucg--- ------uaag ucaaa-uu-- 2701 -----ACCCG AA-ACCAA-G UG-AUCUAAC CAU-GGC-CA GGU------- ------ag-c 2761 -(-------- ---------- ---------- ---------- ------uau) -gcu------ 2821 -GACCGAA-C CAGU-GAUU( GUGGCAA-A) AAUC-UUGGA --UGAGCUG- UGGUUAG-CG 2881 GU(G-AAAU) ACU-AGUC-G A-ACUUGGAU AUAGCU-GGU UCUCU--ACG AA-ACU-UAU 2941 (-UUAG)UAA GGcgcccaag uuaa------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- -------uuc 3061 a-ccccca|a accc------ --------ag gggcuu---- ---------- gaauuauugg 3121 ugu------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------a guaagacuau ggcgauaagg ccccuaguca agagggguaa 3241 gcccu----- ---------- ---------- ---------- ---------- -----aacca 3301 gaaauuu-aa gucacuaa-- ua--c----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- --a-gaguaa gug--uaua- ---------- 3481 ---------- -------aag aggg--uu-c aa-cu----- ---------- ----uagaca 3541 aacag----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-A GGC(UUGGAA 3781 AC-A)-GCCA -UCUG|C(A- CA)G|GAAAA C(--GUAAAA )GU|-UCAC- UG-aau---- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 --aag-cu-a -gg-aaa|-c ucuaagaa-- ---------- ---------- ----uuaagg 3961 cggcu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---aaaucug uaacugaaau ucuggaagcc auacaaaaag 4441 gaaauau--u -aauugg-cu -u-----GGU AGUAG-AG|- CG-UUCUGUA G--------- 4501 ---------- ---------- ---------< gcacuauucg ugcacaccuc guga------ 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --gaaa---| aaCAGAAGUG AUAAUGC-AG 4681 GC|AUAAGUA ---------- ---------- -guac----- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 --aaga-uuu acucccag-- -------aua aa)u-a--ua uacagc---- ---------- 4861 ---uu----- -------cua a-g-g-c--- -----a---u uac------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---gcccgau gg-------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------a cua|uaauuc uuguauuu-g uu-------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- -----c-agg aaaaauauua 6481 uguucuuuc- -aacuguuau uaugg----- -------g-a a-------u- uauaucu--| 6541 |---gggc-a u--AAUUUCU -CUUA-AGGA ACUUGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------A UAAGAUCU|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 UCUCUG|Cu- -aaag----- ---------- (--guua--- ------)--- ---------- 6901 -cugaaGUA- UAG-AGGGUG AAUUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G GUUGUAuagu aaaacu-aa- 7021 --ggac---- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aac)------ gucc---aag gugaaacc-| 7141 CA-ACUG-AA U-|GG-C|-C -GCGGU-(AA CUCUG)ACCG UG|A(UAA)- UG-UAGCACA 7201 AUA-AA-U-A |GCCAAU(-U AAUU-)GUUG GC|GG-GUAU GAAUGGAAUC A-CGAGGGUC 7261 UU-------- ---------- -------ACU GUCUCAAGAG GAAA-GC-CG ----AUGAAA 7321 UU|A|UAGUU GU-AG(U-GA AGAUA)CUAC AUA----AAC AUUGUAAGAC GAAAAG-ACC 7381 CUGUCG-|-A GCUUU--ACU GG|--a-uac cga--ua--| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ----guggGG 8881 C|---GAUAA UGACC-CGAU AU-G------ ---------- auc(------ ---------- 8941 ---------- ---------- ---------- ---------- ----auccaa aa)UA|AAUA 9001 UCGA-aagc- |GGAUAAAAG CUACCG|CAG G|GAUAACAG |C-GUA-A-U AUUGUCGGAG 9061 AG(U--UCUU )AUCGAGGAC --AGUGUUUG CG-ACCUCGA UGUU|GA--A U|U|GCGGU| 9121 GC-CC-UGGU GC-UG(--UA -GA)AGGUAC CUUA-GGU|U GGUC(UGUUC )GACCA-UGA 9181 A--AACCGU- --ACAUGAUU UGAGUUCAGA GC|GU-G(GU AA)CACAGCU CGGUUUCUAU 9241 CU|ACAAU-G UU|-|<---- ---------- ---------- ---caauccc aacuuuucug 9301 >--------- ---------- ------g-gc uc--(UAGU- AC(-GCAA)G GAAU-)gggc 9361 u--ca-<--- ---------- ---------- -------->g caaug----- ---------- 9421 ---------- ---------c ucgacuauac uggucc---- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------- 9541 ---------- ---------- -----cauug acg------- ---------- -----uaaua 9601 ---------- ---aacuucu -ggcugc--u g-caa)a-ga -ag------- ---------- 9661 ---------- -------~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.senil 10775 bp RNA RNA 02-MAR-1998 DEFINITION Mitochondrion Metridium senile.; . ACCESSION AF000023 KEYWORDS . SOURCE Mitochondrion Metridium senile. ORGANISM Mitochondrion Metridium senile. REFERENCE 1 (bases 1 to 17443) AUTHORS Beagley,C.T., Okimoto,R. and Wolstenholme,D.R. TITLE Direct Submission JOURNAL Submitted (16-APR-1997) Biology, University of Utah, 233 Biology, Salt Lake City, UT 84112, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF000023 BASE COUNT 734 a 373 c 516 g 566 t 8586 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~uaa-u uaag------ -uu------- ---------- ---------- 241 ---------- ---------- ---------- -----aaaaa agggacgaa- ----uggcaa 301 |gcu--aGG| GUG-CACU-A A|ua------ ---------- ---------| -----(---- 361 ---------) -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |acuggAAAC 841 UGA(AACA)U CUAAGUA--- -ccagg---- ---------- -----gccaa uuggcacaaa 901 gaAAUC(-AA AC)GA-G-AU |UCC-GUAA- -GUAG-C(-G GCGA)GCGAA -AGCGGA--- 961 ------------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- -------aug 1621 ---UU-AGUG C-ACACCGAU AGAG-AA--- ---AGUACU( -GUGA-)AGG ---AAA-GC- 1681 ug-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- aaagagauuu ga--aaaga- 1801 ccuua-aaau aagu-ccc-c u-<------- ---------- ---------- ---------- 1861 ----->-aAA GCAguug--- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----uagua 2041 --)------- ----caac-g UACCUU(UU- GUAUA)AUGG |GUU-CGCAA GG-------- 2101 aaaaauuuag caa--acuua a--------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- -guccaaaga cgaaggugua 2581 gu-------- ---------- ---------- ---------- ---------- ---------- 2641 ------gaaa ucaag>agaa u-(auauc-) -c-ucuu--- ------uaag uuaaa-uu-- 2701 -----ACCCG AA-ACCAA-G UG-ACCUAGC CUU-GGG-CA GUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auag) ---------- 2821 -GAACGAA-C CGUU-GAUU( GUAGCAA-A) AAUC-UCGGA --UGACCUG- CGGCUAG-GG 2881 GU(G-AAAG) ACU-AAUC-A A-ACUUGGAG AUAGCU-GGU UUUCU--GCG AA-AAC-UAU 2941 (-UUAA)GUA GU-gc-g--- --u------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 -----cca-a a------aaa cuuaauuuua caugauaaag uucaauugcu cggagaggga 3121 uuaa-----c ucugaaugua aaaaauu--- ---------- ---------- ---------- 3181 ----aaggug gacagacaga cagug----- ggcgauaagg ccaauuguca aaaggggaaa 3241 gcccu----- ---------- ---------- ---------- ---------- -----aauca 3301 gaa-guu-aa ---------- ---------- ---------- -----agcca caaaucaagg 3361 ccuauau--- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- --uaag-ugu -aaa-agg-g augua-g-aa -uu-uagaca 3541 augag----- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-A GGC(UUGGAG 3781 CC-A)-GCCA -UCUU|U(G- AA)A|GAUGA C(--GUAAAA )GU|-UCAC- U--------- 3841 ---------- ----caagaa auucuucuau cucuaaaauu augguggcua aaauug---- 3901 ---ag-cu-- --g-aaa--c ucugagga-- ---------- ---------- ----ugaag- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ------a--- ------aaau ucu-ucauu- ---------- 4441 ---------- ---------- -c-----GGU AGCAG-AA|- CG-gacugua a--------- 4501 ---------- ---------- ---------< uauugguucg gcgaaagccc aacuau---- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- --CAGAAGUG AUAAUGC-GA 4681 AC|AUGAGUA ---------- ---------- ---------- ---------- ---------- 4741 -aaaaaucau ug-------- ---------- ---------- ---------- ---------- 4801 ----ga-u-c acuccc---- ---------- cc)a-a--g- ----gc---- ---------- 4861 ---uu----- -------c-g a-u-u----- -----a---u ua-------- ---------- 4921 ---------- ---------- -------aau ugggccagac agcccuuaa- ---------- 4981 ---------- ---------- -------gau gg-------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ------uaac 5101 cuuuugguua cgucaauagg ucu------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- -ua-uaa--- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ------aagu gcacgaagug c--------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---cag-gaa aaauuuauaa 6481 auuauuacu- ---guacu-a g-ucuaa-cg caa--gug-g g-------gu gaaguga--| 6541 |---GGAG-A A--AACUUCU -CUUA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )-------au uUGGGCCU|C GA---CUG-U UU(ACCAA)A AA-CAUA-GC 6841 UCUCUG|Cc- -aaagc---- ---------- (--uaaau-- ------)--- ---------- 6901 gcugaaGUA- UGG-AGGGUG AAGCCAG CC-CG-AU|G GUUGUA-UCU GAAAAG-GU- 7021 --UGGC---- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aac)------ GUCA--ACUU CAUAAGGG-| 7141 CA-AUUG-AA U-|GG-C|-C -GCGGU-(AA CACUG)ACCG UG|A(UAA)- UG-UAGCGUA 7201 AUC-AA-U-A |GCCAAU(-U AAUU-)GUUG GC|CG-GUAU GAAUGGCAUC A-CGAAGGCC 7261 CC-------- ---------- -------ACU GUCUUAAGAG GACU-CU-CC ----AUGAAA 7321 UU|G|AAAUC GU-AG(U-GA AGAUG)CUAC GUC----CAU AUUGUAAGAC GAAAAG-ACC 7381 CCAUUG-|-A GCUUU--ACU AA|--A-GAC UUG--UAUG| --aga-aac au-cga-uau aau-uaU-CU UC--(UAGU- AC(-GAAA)G GACC-)GAAG 9361 A--au-u ccucu----- ---------- 9421 -|-------- (-----) 9541 ---------- ---------- -----ggagg uuu------- ---------- -----auaau 9601 ---------- --uaauCACU (GAUUGC--C UCUUA)A-GU -GU-gaaaau ua-uaucgaa 9661 c------u-- -guuu--<-g augugaaaaa aaau------ ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -------|-- 9961 ---(------ ---)------ ---------- ---------- ---------- ---------- 10021 -|-------- ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---------- ---------- ---------- --------(- ---------- 10141 ---------- ---------- -)-------- ---------- ---------- ---------- 10201 ---------- -|-|------ ---------- ---------- ---------- ---------- 10261 ---------- ---------- ---------- ---------- ---------- ---uaugauu 10321 augc~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (3)-Rhodop 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.crisp 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Chondrus crispus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Chondrus crispus. ORGANISM Mitochondria Chondrus crispus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z46224,Z47547 ID MICCLSRRN standard; DNA; ORG; 2583 BP. XX AC Z46224; XX DT 30-JAN-1995 (Rel. 42, Created) DT 30-JAN-1995 (Rel. 42, Last updated, Version 2) XX DE C.crispus Mitochondrion gene for large subunit ribosomal RNA XX KW ribosomal RNA; ribosomal RNA large subunit. XX OS Chondrus crispus OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Gigartinaceae. XX OG Mitochondrion XX RN [1] RP 1-2583 RA Leblanc C., Fontaine J., Boyen C., Loiseaux-de Goer S.; RT "DNA sequence and secondary structure of the mitochondrial large RT subunit rRNA from the red alga Chondrus crispus"; RL Unpublished. XX RN [2] RP 1-2583 RA Leblanc C.; RT ; RL Submitted (17-OCT-1994) to the EMBL/GenBank/DDBJ databases. RL CATHERINE LEBLANC, CNRS, CENTRE D'ETUDES D'OCEANOLOGIE ET DE RL BIOLOGIE MARINE, PLACE GEORGES TEISSIER, ROSCOFF, 29 682 CEDEX, RL FRANCE XX FH Key Location/Qualifiers FH FT source 1..2583 FT /organism="Chondrus crispus" FT /mitochondrion FT /clone="E1, E9, E5" FT /tissue_type="Apices" FT /cell_type="Protoplasts" FT rRNA 1..2583 FT /product="LSU ribosomal RNA" XX SQ Sequence 2583 BP; 1013 A; 336 C; 429 G; 805 T; 0 other; BASE COUNT 1013 a 336 c 429 g 805 t 8192 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~gaa-u cuuua----- ---------- ---------- ---------- 241 ---------- ---------- ---------- -----aaacA AGCAUUAAA- ----UGAAAA 301 |CCU--UGA| UAA-AAAA-a u|a------- ---------- -----agga| -cguc(-acg 361 c--------) u|acg-aaa- guuauga|gu --aagc-(-- ---------- ---------- 421 ---auag)-g cuuguga--u ccguaaa-uu uccu-aa-ga g--------- -----(uaaa 481 )cuc|---ag cu-------- ---------- -uaa------ ---------- -(uuu---)- 541 ---------- ------uuac au-<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----aUAGU |AACGAGAAU 841 UGA(AUCA)U CUUAGUA--- -UCGUU---- ---------- ---------- ------aaua 901 aAAAUC(-AA AC)GA-G-AA |AUU-GUAA- -GUAA-U(-G GUGA)AUGAA -AGCAAAAA- 961 -GGCUAU<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- --uauauuaa aauucaguua aaaaau---< ---------- ---------- 1261 ---------- ---------- ---------> (uauuu-)-- -auu------ GC-|U(UUG) 1321 G--AAGG(UA UAAGC)CCUg ua--uuaaac ugaaauaaua uaacaaaacu ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---AAGUAgu acgaaa(--- ---------- 1561 --aguua)uc uuguauGAAC ----aaAGGA G(AUCCA-C) -CUUCUA--- agccaaccaa 1621 ---au-UUUU U-UAAUCAAU AGUA-AA--- -CGAGUACU( -GUAA-)AGA ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAA--uuc c(-guaa--) ggau------ ---------- ---------- --------a- 1801 aaUUG-AAAU UAAA-UGC-U U-<------- ---------- ---------- ---------- 1861 ----->auaa caacucgaaa uu------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---auuaaa 2041 --)------a auaacgaa-A UGCCUU(UU- GCAUA)AUGA |GUC-AGUAA GU-----UA- 2101 AUAAAUAUAG CAA--guu-- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---caaauau u)-------- ----aa-u-- 2521 auc-(gaaac )--ga----- --(------) ---------- ---------G UAAUA-UUUA 2701 UUA-AACCUG AA-ACCAA-G UG-AUCUAUU CAU-CAG-CA AGCUGAA--- A-AU--UC-A 2761 U(-------- ---------- ---------- ---------- -----uaac) AUGUUUUUUA 2821 GGGCUGAA-C UCAC-ACAU( GUAGCAA-A) AUGU-GGAGA --UGACUGA- UGAAUAG-GA 2881 GC(G-AAAG) ACU-AAUC-A A-ACUUGGAG AUAGCC-GGU UUUUC--ACG AA-AUG-UAU 2941 (-UUUA)GUA CA-UC-AUUA ACUa<----- ---------- ---------- ---------- 3001 ---------- -----auuca a--------- ---------- ------->ga uua|-AAUUU 3061 U|AGAUAG|A GUACaca-au aa-gca--aa ggggu---(g uaacg---)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---ac uua-cu-gag 3301 uuu--aa-uc uAACUCCC-- AAUU|-AUAA -U-U---uaa ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uaa--AG-U -UAAU-AGAC AGUCU--UU- GA-GC(-GAA 3481 AAG)GUCCAU AG-AC----A AGAGGA(AAA -CAA)UCC-G AAUCA-C-AU -AC-UAA--- 3541 --GAU-CUUG -AAAUUG-U- AACUUAGUG- ---------- aaaaagcu-- uuaaaaagaa 3601 u-c------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- -aaau-auua aUGGAU-A GGC(UUAGAA 3781 GC-A)-GUCU -UUCA|U(U- AG)A|GAUAG C(--GUUUUA )GC|-UCAU- UAUUUU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->uuu-cu-u -uguuaa|-a guuaaaau-- ---------- ---------- ----uuaaga 3961 AGacu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uUAGUUA UAU------- ---------- ---------- ---------- 4081 -------|AU CGAA--GUA| G--U-GG|AU Uac------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(a 4441 uu----)--- -----gu-AA -U-----GGU AGUGA-AA|- CG-UUCUGUA A---ucuu-- 4501 ---------u uUAUU-UUUU (GAAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UAA--AUA-a a|uuaa---| UUCAGAAGUG CUAAUGC-UG 4681 AC|AUGAGUA -GCG--AAA- ACU-AU-GU- (uaacaaa-- ---------- ---------- 4741 ---------- -----)-U-C AUAGU-|CGC U-UUAA-GUU UAA--GGGUU -|----UCAA 4801 CGUAA---uu ---------- ----(--uca a-)a-u|-uC GUUGAG---- ---------- 4861 ---UUAGU-- -CGGUCCUUA A-G-A-G--- gugaau-(-g aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--guu---g ua---C-UUG AC-AGgaau- ua--(----- ---------- ---------- 5041 ---------- --uuaa---- ----)--uaa |---ac|cag uuauauguau |uaaa----- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---uuau-ga aaaaaaauua ---------- 5461 ---------- ---------- ---|------ -auuaauaaa acuuuuuaaa uuuuuugugg 5521 |aaaaaaauc aaac------ ---------- ---------- ---------- --------uu 5581 a-<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->au uuuucaagaa ----aa-aau ua-<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ----uaacaa auuaag---- -ACCGUA|CU 6481 ---uAAACC- -(GACACU)G G|UAAAU-UU auc-(GAA-G A-----)-GA UUAAAGUGa| 6541 |--AUGAA-A A--AAUCAUA -UUAA-AGGA AUUCAGCAAA UUAACU-CUG UACG(UUCG- 6601 )CAAUAA-AG AGA|ACCuu- ---------- -----(uuau ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ --------aA 6781 -GGU|A(GCA )U--UAAAUA AAAAGUAA|C GA---CUG-G UU(AUCAA)A AC-CACA-GG 6841 ACUCUG|CU- -AAUU----- ---------- (--uaua--- ------)--- ---------- 6901 -AAAAAGUA- UAG-AGUCUG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G CUUGaa-aau aauaau-uuu 7021 u--------g u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uaa)gc---- ----ucaaau u-uuaauua| 7141 CA-AGUA-AA C-|GG-C|-G -GUUCU-(AA CUAUA)AGAA UC|C(UUA)- GG-UAGCGAA 7201 AUU-CC-U-U |GACGGG(-U AAAU-)UCCG UC|CU-GCAU GAAUGGCGUC A-CGAUUGCU 7261 UU-------- ---------- -------ACU GUCUCUAAUA UGAA-UU-CA ----GCGAAA 7321 UU|A|CAAAA CC-UA(U-GA AAAUG)UAGG UUA----CUU GCAGUAAGAC GGAAAG-ACC 7381 CUA-GA-|-U CCUUU--ACU CU|--A-UUU UUG--UAUU| <--------- ---------- 7441 ---------- ---------- --->GUAAA- AA-----UUA -uauaauUG- UAU---AGAA 7501 UAAGUGGAA- -gu------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----aca c)-------- --------ac 7681 AACUAUGAAA UACCACU|c- ----aaaua- u-a-U-AGUA UUUA-Cuua- -uuu-au--- 7741 uaau-(--uu aa--)-auua ---------- ---------- ---------- ---auaaa<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-aac cgUAC-A-AA -AAA-GG-GA GUUUACUUG( 8161 GGA)CG-AG- U|ACCUCC(- --------UA AAAUGUAAC- )GGAG-GU|G |U|ACGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAA 8401 -CU|-uau-- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (auuacaa-- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ---aaau|GU (A|UAAUG)G CA--AAA-GU 8761 U-GC-UUGAC AAUUA-GAU( -ugauaa--- )AUCAA-AUU G--------- ---------- 8821 ---------- --------GG AC-------- ---(GCAA-- -)-------- ----GUC-AG 8881 U|---CAUAA UGACC-CGAU AU-U------ ---------- UAA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)UU|AAUA 9001 UCGUUCAAC- |AGAUAAAAG GAACUC|UAG G|GAUAACAG |A-UUC-A-U CGUGAUUGAG 9061 AG(U--UCGU )AUUGAUGUC --ACGGUUUG AU-ACCUCGA UGUC|GA--C U|C|AUCUU| 9121 AU-CC-UGAA GU-UG(--AA -GC)AAAUUU CAAG-GGU|C UAGU(UGUUC )GCUAG-UUA 9181 A--AAAGGU- --ACGUGAGU UGGGUUCAGA AC|GU-C(GU GA)GACAGUU CGGUCCCUAU 9241 CU|ACUGU-A AG|U|<---- ---------- ---------- ---------- ---------- 9301 >aaaga-aaa au--AA-AAA AU--CUA-UC UU--(UAGU- AC(-GAGA)G GACC-)AAGA 9361 U--AU-<--- ---------- ---------- -------->G UUAACCA-CU GGUAUAUCGA 9421 U|-UGU-UAA (uccu-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 UUA-GCAUAG UCAA--AUAG CUAC-GUUAA UUUa------ ---------- -------cgc 9601 ---------- -UUAAAUACU (GAAAGA--A UCAAA)A-GU -AU-caaagc -uauuuu--- 9661 uuu-a--u-- -uuuuc-<-- -----ag--- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -gaauaa|UC 9961 UAA(AAGACU A--)UUAGAU U--------- ---------- ---------- ------GAUC 10021 G|AUUUAUAA ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UUUAAAU UUA------- ---------- --------(- ---------- 10141 ---------- -------GUA A)UAAAU--- ---------- ---------- ---------- 10201 -----uuaGU A|A|UAAACA CGAaa----- ---------- ---------- -----uuauu 10261 c--------- ---------- ---------- ---------- ---aaa---- ---aaagauu 10321 uua-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (3)-Viridi 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.wicke 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Prototheca wickerhamii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Prototheca wickerhamii. ORGANISM Mitochondria Prototheca wickerhamii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X68722 LOCUS PWMLSURRN 4059 bp DNA PLN 12-FEB-1993 DEFINITION P.wickerhamii mitochondrial gene for large ribosomal RNA ACCESSION X68722 KEYWORDS large ribosomal RNA; LSUrRNA gene. SOURCE Prototheca wickerhamii ORGANISM Mitochondrion Prototheca wickerhamii Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; Chlorococcales. REFERENCE 1 (bases 1 to 4059) AUTHORS Wolff,G. TITLE Direct Submission JOURNAL Submitted (12-OCT-1992) G. Wolff, Ruhr-Universitaet Bochum, Allgemeine Botanik ND7/168, Universitaetsstr. 150, W-4630 Bochum, FRG STANDARD full automatic REFERENCE 2 (bases 1 to 4059) AUTHORS Wolff,G., Burger,G., Lang,F.B. and Kuck,U. TITLE Mitochondrial genes in the colourless alga Prototheca wickerhamii resemble plant genes in their exons but fungal genes in their introns JOURNAL Nucleic Acids Res. 21, 719-726 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..4059 /organism="Prototheca wickerhamii" /mitochondrion /strain="263-11" mRNA join(1..2721,3097..3151,3652..4059) /gene="LSUrRNA" exon <1..2721 /number=1 exon 3097..3151 /number=2 exon 3652..>4059 /number=3 intron 2722..3096 /number=1 intron 3152..3651 /number=2 CDS join(1..2721,3097..3151,3652..4059) /product="large ribosomal RNA" /gene="LSUrRNA" /note="90 stops when translation attempted, frame 1, code 0" BASE COUNT 1478 a 584 c 804 g 1193 t ORIGIN BASE COUNT 1039 a 462 c 656 g 847 t 7771 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~auuauauG UACAUUUAG- ----UGGAGG 301 |CCU--AGA| UAA-GAGU-G A|aa------ ---------- -----ugga| -cgua(--ua 361 gcga-----) a|acgaaaa- gcuauau|ac aauug--(-- ---------- ---------u 421 cguaaua)-- caagau---g guauaga-uc ucca-ua-ga g--------- -----(gaaa 481 )cuc|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ----aaUGAC |CUAGUGAAU 841 UGA(AACA)U CUUAGUA--- -ACUAG---- ---------- ---------- ---AGGAAUA 901 GAAAUC(-AA CC)GA-G-AC |UCC-GUUA- -GUAG-U(-G GUGA)GCGAA -AGCGGAAU- 961 -AGGCCA------ 1201 ---------- ---------- ---------- --guaauuu< ---------- ---------- 1261 ---------- ---------- ---------> (gaaa--)aa acac------ GC-|C(AGA) 1321 G--AAGG(UU AUAGC)CCUG UG-------- ---------- ---------- ----GAGUAAA ACGAGA(--- ---------- 1561 ---gcaa)AC UUGUUUGAAA ----auAGGG G(AACCA-U) -CCUCUA--A GCCUA-AGUA 1621 ---CGCACUC U-UAAUCGAU AGUG-AA--- -CAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------a 1741 aaaagaa--- ---------- ---------- ---------- -------GUG AA--AUAAA- 1801 UACUG-AAAC UGGA-UGU-A U-<------- ---------- ---------- ---------- 1861 ----->ACAA GCAcucagag cuuuu---<- uauaucuuau auauaaugau aagugua--- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)---aaga gugauggg-G UACCUU(UU- GUAUA)AUGG |GUC-AACGA GU-----AA- 2101 AUAAAUGAAG CGA--gcuua a-gcu--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------aua g)----agug --gagg-cgu 2521 agua(aaaac )gaaua<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- ---------- ---------- ------auaG UGUCA-UUUA 2701 UUU-GACCCG AA-ACCGA-G UG-AUCUAGU CAU-GAA-CA GGUUGAA--- A-AA--GC-G 2761 C(-------- ---------- ---------- ---------- -----uaac) ACGUUUUGGA 2821 GGACCGAA-C UCAC-GUCU( GUGGCAA-U) AGAC-GGAGA --UGAUUUG- UGAUUAG-GG 2881 GU(G-AAAA) GCC-AAUC-G A-ACUCGGAG AUAGCU-GGU UUUCU--GCG AA-AUU-UAU 2941 (-UUAG)GUA AA-GU-CUAG AGUaag AUA|-AAAAG 3061 G|GGGUAG|A GCACUCg-uU GG-gca--ag gguggc--(c caaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gcc uua-cu-aag 3301 UCC--Aa-gG AAACUCCU-- AAUA|-CCUU -U-U---UAU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -agu--AA-U -CUAG-AAUC AGACU--UU- GG-GC(-GCU 3481 AAG)GUCCAA AG-UC----G AAAGGG(AAA -CAG)CCC-A GAUCG-A-AC -GC-UAA--- 3541 --GGU-UCCA -AAGCGU-A- UAUUUAGUG- ---------- GUAAAGGAU- GUUAUAGAGC 3601 C-u------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CAAGU-A GGC(UUAGAA 3781 GC-A)-GCCA -UCUU|A(U- AA)U|GAAAG C(--GUAGUA )GC|-UCAC- UGGUCUggc-ua-U -GU-AGC|-G CCGAAAAU-- ---------- ---------- ----GUAACG 3961 GAGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---cAAGUAU ACC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCG| G--C-GG|CU Auaaauuuu- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(c 4441 aauaau)--a aaguuua-UA -G-----GGU AGCAG-AA|- CG-UUCUGUA A---GUAGAA 4501 U------aau gAUAA-AUAC (GUAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GU AUU--UAU-u u|AUAU---| AUCAGAAGUG AGAAUGU-UG 4681 AC|AUGAGUA -ACGU-AAA- AUC-AU-GU- (guaau---- ---------- ---------- 4741 ---------- -----)-U-C AUGAU-|CGC C-GAAA-GUC CAG--UGUUU -|----UCUA 4801 CAaac---ua ---------- ----(--gaa uu)c-a|-AU GUAGAG---- ---------- 4861 ---UUAAU-- -CGGCCCCUA A-G-UaU--- ucaagc-(-g auu------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--gcu---g aa---AuAUA AU-GGGUAc- aaga(a---- ---------- ---------- 5041 ---------- --uuuaaaau ---u)ucuug |---au|gua u--acua--- |---- -----uu--a cgaau----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<-aguacc uauuuuaaaa ga(uaaaugg auu)ucuuuu aaaauauacc u--------- 5641 ---------- ---------- ------->-- auuccaggaa ----aa-aaa ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- --------ua guauau-aaa cACCGUA|CU 6481 U-----ACC- -(GACACU)G G|AGGAU-GA GUA-(GAA-U A-----)-UA CUAAGGCG-| 6541 |--UAGAG-A G--AAUCAUA -UUAA-AGGA ACUCGGCAAA UUGCCU-CCG UAAC(UUCG- 6601 )GGAUAA-GG AGG|ACCACU uuu------- -----(---- ---)<-auaa ugaaau--u- 6661 aau(gaaa)g uu-u-uuuuu agaaa----- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ----gaaAGU 6781 -GGU|G(GCA )C--AAAAUA GGGAGCGA|C GA---CUG-U UU(ACCAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGCG---- ---------- (--GUAA--- ------)--- ---------- 6901 CGCGACGUA- UAG-GGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-ACU UAAGUG-GA- 7021 --GAGGUU-U G-(------- ---------- ---------- ---------- ----uugcug 7081 uaaacauuau aaaauaaugu uguaaaauaa auu)CA--AG CUUU--UAAA U-UAAUGU-| 7141 CC-AGUA-AA C-|GG-C|-A -GCUGU-(AA CUAUA)ACAG UU|C(UAA)- GG-UAGCGAA 7201 ACU-CA-U-U |GUCGGG(-U AAGU-)UCCG AC|CU-GCAU GAAUGGUGUA A-CGAUUGCU 7261 CC-------- ---------- -------GCU GUCUCUAAUA UGAU-CU-CA ----GUGAAA 7321 UU|G|AACUC UU-CG(U-GA AGAUG)CGAA GUU----CCC AAAAGUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GC|--A-ACU UUA--CGUU| <--------- ---------- 7441 ---------- ---------- --->gaaaa- ag-----gau -AUUGAUUG- UAG---AGGA 7501 UAGGUGGGA- -GCUauu-a- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---uuua -)-------- -ua--auAGC 7681 AACCUUGAAA UACCACC|C- ----UUUCU- a-u-a-ucgu uuuu-cUAA- -gca-uu--- 7741 aauau(-cau uuaa)auaug ---------- ---------- ---------- ---auugu<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-gac agCGU-A-UA -GUG-GG-UA GUUUGACUG( 8161 GGG)CG-GU- C|GUUUUC(- --------UA AAGAGUAAC- )GAAA-AC|G |U|GCGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAA 8401 -GC|--UC-a agcugg<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (aaggaaa-- )----ucagc uG-------- ---------- 8701 ---------- ---------- ---------- ---UAGA|GC (G|UAAUG)G UAU-AAG-CU 8761 U-GC-CUGAC UGUGA-GAC( -uuacaa--- )GUCAA-ACA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGACC-CGGG AG-C------ ---------A UCC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AAAUGG AC)GG|GCUC 9001 UCGCUCAAC- |GGAUCAAAG GUACGC|UAG G|GAUAACAG |G-CUA-A-U GAUUCCCAAG 9061 AG(C--UCUU )AUCGACGGA --AUCGUUUG GC-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UCGA GC-UG(--UA -GA)AGGUUC GAAG-GGU|U CGGC(UGUUC )GCCGA-UUA 9181 A--AGUGGU- --ACGUGAGU UGGGUUCAAU AC|GU-C(GU AA)GACAGUA UGGUUCCUAU 9241 CU|UUUUU-G GG|U|<---- ---------- ---------- ---------- ---------- 9301 >-GUAA-AAA AU-UGC-CAG GAU-GUA-UU CU--(UUGU- AC(-GAGA)G GACC-)GGAA 9361 U--GC-<--- ---------- ---------- -------->A CAAACCG-CU GGUGUACCAG 9421 U|-UGU-UAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GCAUUG CUGG--GUAG CUAC-GUUUG GAC------- ---------- -------UAG 9601 ---------- -AGAACCGCU (GAAACG--A UCUCA)A-GC -GG-GAAACU Aa-CCUGaaa 9661 acaAG--U-- -UUUUg-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- ---auau|CG 9961 UAG(AAGACU A--)CUACGU ---------- ---------- ---------- ------AAUA 10021 G|guggaaug ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAAA AUA------- ---------- --------(- ---------- 10141 ---------- -------GCA A)UAUUUcca uuu-uacugu uuauaauuua uuauuuucag 10201 uaagagagca a|a|uccaua cua------- ---------- ---------- ---------- 10261 ---------- ---------- aa-u-cuaa- ---------- ---------- ---------- 10321 --------|- uuauauuauu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.eugam 10775 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas eugametos mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas eugametos mitochondria. ORGANISM Chlamydomonas eugametos mitochondria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L28928,L28929,L28930,L28931 BASE COUNT 728 a 288 c 381 g 518 t 8860 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~AA(AACA)A Uaa------- ---------- ---------- ---------- ---agguaau 901 agauag(-ug ua)ua----- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- -----uuuau uuagugauuu >--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- -------UAU UAAA-UA--- -AUAGUACU( -GUGA-)AGG ---ACa-cu- 1681 au-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- -------GA- 1801 AAUUA-Uaac ua-------- --<------- ---------- ---------- ---------- 1861 ----->ugcc aauacaauaa --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----uaaa 2041 --)------- -uuauuau-G UACCUU(UU- GCAUC)AUGG |GUC-AGCUA CU-----UA- 2101 AUAAACAUA- ---------- -------(aa aauaaau-ca a-auuuaa** ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- ---------- ---------- -------**- --AUG-UUUA 2701 UUG-GACCCG AA-ACUGCUA CG-AGCUUGU UAU-UAA-UA AGUa------ ------ug-a 2761 -(-------- ---------- ---------- ---------- -----uaua) -aca------ 2821 ugACUGAA-C CG-GUGUCU( GUAGUAA-A) AGAC-UCGGA --AGAUUAA- UAACAAG-GA 2881 GU(G-AAAG) GCU-AAUC-A A-GUGCAGUG AUAGCU-GGU UCCCG--GCG AA-AUC-UAU 2941 (-UUAG)GUA AA-GU-GGUA au-C<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa AGA|-CAAUU 3061 A|------|- ---------- ---------- --------(- --------)< aagauauaua 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|-UAAU -U-G--AUCU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aua---a-a -UACU-AAUC AGACA--UA- AA-GC(-GGU 3481 AAG)GUCUUA UG-UC----A AAAGGA(AAA -AAG)UCC-U AAAGU-G-AA -GU-UAA--- 3541 --AGU-cccu aauuguu-u- uuuuuuaaa- ga------*- -aaauuuua- cguauuguau 3601 a-a------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- agauc-UCAU A<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAGAU-U AGC(UUAGAA 3781 GC-A)-GUUA -UUCU|A(U- AA)U|GAAAG C(--GUAGUA )GC|-UCAU- AUGUUU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGU-AC-a -gu-aag|-u aaacaaau-- ---------- ---------- ----gucc-g 3961 ggaau----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- -----aagaa aga------- ---------- ---------- ---------- 4081 -------|AC UGAA--ACU| C--A-CU|AA Aagaaaguaa a**------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------* *aagaaua(- 4441 ------)--- --uuucu-UU -U-----AGU AGCUG-GG|- CG-UUCUAUA ---------- 4501 ---------- ---------- (-------)< -aaaaagaau uuauauu-uu auaaaaaaau 4561 auaaguagua uaauggauac auca------ ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| UAUAGAAUUG AGAUUGC-UG 4681 AC|AUUAGUA -ACAA-UAA- guu-u----- (aauu----- ---------- ---------- 4741 ---------- -----)---- -aaac-|GGC C-GAAA-GUC UAA--GGUU- -|----uu-- 4801 ---------- ---------- ----(--auc --)---|--- ---aaG---- ---------- 4861 ---UGAaa-- -CGGU----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--* *-aaa----- ---------- -GCCGUA|CC 6481 A--CAAACC- -(AACGCA)G G|UAGAC-UA CAA-(caa-u a-----)-UU GUAAGGCCA| 6541 |---AGAA-C A--AACUAUU -UAUA-GGGA ACUCGGCAAA AUACGU-AAU AGAC(UUCG- 6601 )GUUAAA-AG ACG|CCUcu- ---------- -----(aau- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ --------ag 6781 -AGG|A(AAA )U--AUAAAA GAUUGCUG|C AA---CUG-U UU(ACCAA)A AA-CACA-UG 6841 GCCAUG|CA- -AA------- ---------- (--caaaa-- ------)--- ---------- 6901 ---CAAGUA- UAU-GGCCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-aa|g gcu------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uc-)------ ---------- ---------| 7141 ---ggcA-AA C-|GG-C|-A -GCUGU-(AA CUCUA)ACGG UU|C(UAA)- GG-UAGCAAA 7201 ACC-CC-U-U |GACGUU(-U AAUU-)GGCG UC|GC-GCAU GAAUGGUGUA A-UGAUGGCA 7261 AU-------- ---------- ------aGCU GUCCCAUAAA UAGA-UU-CU ----GUGAAU 7321 UU|G|AAUUA CC-CG(U-GC AGAUG)CGGG UAU----UUA AGCACUGGAC GAAGAG-ACC 7381 CUAUGA-|cA CCUUU--ACA UG|-aU-GAU AUU--CC--| <--------- ---------- 7441 ---------- ---------- --->------ --------aa -agauaaau- aga---ucuU 7501 UAUGUGGaa- -aaagua--- ---------- -- --(------- -)-------- ------ugcg 7681 acgcgacaaa AACCACA|a- ------aug- aua-c-u-ag ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------agua aaGGA-A-UA -UAC-AU-AU GUUUCACUG( 8161 GGG)CG-GU- G|GUUCGU(- --------UA AAAAGUAAC- )GCGA-GC|A |A|UCAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-CUU 8401 -UG|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (-uaaaac-- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|CU (A|A-ACU)A GAA-AAC-AA 8761 A-GC-UUAAC UGUAA-GGA( -ucacaa--- )GCCAA-GCA G--------- ------augu 8821 -ucgucuggc gugcgacgcG CU-------- ---(GAAA-- -)-------- ----AGCAGG 8881 A|---AGUAA AGACC-CAAU UA-A------ ---------- -AA(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uug uc)UU|UUAA 9001 UUGAUCAAC- |GGAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUA-G-U ACGCGCCUAG 9061 AG(U--UCAU )AUCGACGCG --CGUGUUCG GC-ACCUCGA UGUU|GG--A U|C|AUCGC| 9121 GU-CC-UAAA GC-UG(--CA -CA)AGGUUU UAAG-GGU|U AGGU(UGUUC )ACCUA-UUA 9181 A--AGCGGU- --ACGUGAUC UGAGUUCAGA AC|GC-U(GC GA)AGCAGUU CGGUUUCUAU 9241 CC|GUGCU-U AG|U|<---- ---------- ---------- ---------- ---------- 9301 >--aau-gug ug-aua-ugu uAA-GGA-UU AU--(GAGU- AC(-GAAA)G GACCA)GUAG 9361 A--UU-<--- ---------- ---------- -------->C UAAACCU-CU GGUGAAUUUG 9421 U|-UGU-Ca- (aaaa-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 -aG-GCAUAG CAAA--GAAG CUAA-GUUUA UAA------- ---------- -------aaa 9601 ---------- -----agcau (aaaaca--c -----)a-gg -u-------- au-aguaua- 9661 ugaua--a-- -cauau---| ------(--- )--------- -----ga|UU 9961 UGU(AAGACU A--)AAAAGa gagaucuuaa aaaaaagaag aua~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.reinh 10775 bp RNA RNA ~?~???? DEFINITION Chlamydomonas reinhardtii mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas reinhardtii mitochondria. ORGANISM Chlamydomonas reinhardtii mitochondria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X54860 Chlamydomonas reinhardtii mt LSU rRNA (crem m lsu) Boer PH, Gray MW (1988) Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA. Cell 55:399-411 BASE COUNT 734 a 517 c 557 g 611 t 8356 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~aaggg auugc----- >--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --ugacuGAU AGUG-CAA-- -ACAGUACU( -GUGA-)AGG ---AAC-ua- 1681 au-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- -------GA- 1801 AACUG-Ggcu aaaa-cac-u --<------- ---------- ---------- ---------- 1861 ----->AUAA ACAcuaagu- -------- (--------- 2041 --)------- --auuuagcG UACCUU(UU- GCAUU)AUGG |GUU-AGCUA CU-----CA- 2101 AUAGACGU-- ---------- -------(ga guuaagcaga aagcuuacug agauuuuuuu 2161 au**-aacga gaggggccau cacagagaug cccucucugg guuccuuuaa auguuacuag 2221 gaccccaacg cgugcaacaa cacacuaaag gggugggcug ccuaaaaaag cccgagagcu 2281 gcugguucaa cccacacucu cacaagcccc acaucgguau uuuuaggcua aaaucuauca 2341 gcccuuguac guaacgauug cgacuacgca ugccuaagug cgcaa**aug agugccuaag 2401 cacucaauuu cggugcucgg ugaaaccgag cauccaauac uaaagaaacu uuacuggcuu 2461 aguacuggga ccccauuuuu aguauaccua cauuauauac a)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- ---------- ---------- ---------- --ACG-UCUA 2701 UUG-GACCCG AA-ACCGA-U CG-AUCUAGC GAC-GUG-CA GGUC------ ------ug-a 2761 c(-------- ---------- ---------- ---------- -----uuua) auca------ 2821 gGACCGAA-C CC-GUGUCU( GUUGCAA-G) AGAC-UGGGA --UGACACG- UGGCUAG-GG 2881 GU(G-AAAG) GCC-AAUC-A A-GUUCGGUA AUAGCU-GGU UUUCU--GCG AA-AUC-UAU 2941 (-UCAG)GUA AA-GA-GUGU GUAc<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->ua AGA|-CCAUU 3061 A|------|- ---------- ---------- --------(- --------)< auuaua**-- 3121 **au-----a ccgguagcgc aagcgaaugg ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|-UAAU -G-G--AUCU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aa---UA-C AACAC-AUUC AGACA--AU- CG-GC(-GGU 3481 AAG)GUCAAU UG-UC----A AGAGGA(GAA -CAG)UCC-A GAGGC-G-AG -GC-UAA--- 3541 --GGU-GCCU -AAC-AA-U- Uauuauaua- -------c*- -----AAGG- UAGAGUCUGC 3601 G-U------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UGAAC-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AACAU-A GGC(UUGGAA 3781 GC-A)-GCCA -CUGU|G(C- UU)G|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGC-AGUA -CU-CCG|-C UUauauau-- ---------- ---------- ----gucc-g 3961 gcac------ ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----uccaAA UU-------- ---------- ---------- ---------- 4081 -------|GC CGAA--GCC| C--G-CC|UA Ugacaa---- ---------- ---------- 4141 ---***---- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------* *aa-----(- 4441 ------)--- ----guc-AU -A-----GGU AGCAG-AA|- CG-UUCUG-- -------gaa 4501 caa----uua cgcug----- (AAAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- --c--agu-- -|-------| ACCAGAAUUG AAGCUGC-UA 4681 AC|AUAAGUA -ACAC-UAA- aug------- (gauaa---- ---------- ---------- 4741 ---------- -----)---- --cau-|GGC C-GUAA-GCC CAA--GGUUU -|----ug-- 4801 ---------- (----- --)---|--- ---caG---- ---------- 4861 ---UGAAU-- aCGGU----- ---------- -------(-- ---------- ------)--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--* *au------- ---------- -ACCGUA|CU 6481 G--CAAACC- -(GACUCA)G G|UGGGC-UA GUA-(uau-a ------)-UA CUCAGGCCA| 6541 |--uAGAA-U C--AACCAUG -UUAA-AGGA ACUCGGCAAA AUGCAC-GCG UGAC(CUCG- 6601 )GAGGAA-GC GUG|GCU--- ---------- -----(aaaa ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 -AGA|C(UCA )G--CAAAUA GCCGACAG|C GA---CUG-U UU(ACCAA)A AA-CACA-GG 6841 AUAGUG|CU- -AACAGacgu aaauuaagcu (-gcaaaa-- ------)agc gguuuuauuu 6901 UUGGAUGUA- UAC-UAUCCG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-aa|g gu-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g aa-)------ ---------- ---------| 7141 ---gaaA-AA C-|GG-C|-G -GCAGU-(AA CUCUA)ACUG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GACGUU(-U AAUU-)GGCG UC|CUuGCAU GAAUGGCUGA A-CGACUGUC 7261 GG-------- ---------- -------GCU GUCUCUAACA UGGA-AU-CU ----GUGAAU 7321 UU|G|AAAUC UU-CG(U-GC AGAUG)CGAA GGC----GCU GGCAAGGGAC GAAGAG-ACC 7381 CUAUGC-|-A GCUUC--GCU GG|-gugcUA AGA--guu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------g -gucgug-a- auu---guuG 7501 UAGUGGGuu- -gg------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----aaa -)-------- -------cug 7681 acagguucaa UACCUGA|u- --uaccac-- gua-cuu--- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- ---------cau uuACU-C-UU -AuccuC-AA GCUUUUCUG( 8161 GGA)CG-GA- U|GCUUCC(- --------UG AAUAGUAAC- )GGGA-GU|G |A|UCAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->U-GG-UAC 8401 -UG|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (cuaacga-- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|CU (U|A-AAU)A GAA-AGC-AG 8761 U-GC-UUGAC UGUAA-GAA( -ccacag--- )UUCGA-GCA G--------- ---------- 8821 ---------- --------GG AC-------- ---(GCAA-- -)-------- ----GUC-GG 8881 C|---auuAA UGACC-CAGG GU-A------ ---------- -AC(auuuua uc**aaauag 8941 gucgauaaaa cugcuuuucu aaagagagag agcacaaacg aauuauacac a-)GU|UACC 9001 CUGAUCAAC- |GGACAAAAG CUACGC|UAG G|GAUAACAG |G-CUU-A-U CCGCCUUUAG 9061 AG(U--UCCU )AUCGAUGGG --CGGGUUUG GC-ACCUCGA UGUU|GG--A U|C|AUCGC| 9121 GU-CC-UGUG GC-UG(--AA -GG)AGGUCG CAAG-GGU|U GGAU(UGUUC )GUCCA-UUA 9181 A--AGCGGU- --ACGUGAUC UGAGUUCAGA CC|GU-C(GU GA)GACAGGU CGGUUUCUAU 9241 CU|UUGUC-A GC|G|--uau-gca ca-guu-agc cgc-UGG-GG GC--(GAGU- AC(-GAAA)G GACCA)GACC 9361 C--CU-<--- ---------- ---------- -------->A UAAACCU-CU GGUACACUUG 9421 U|-UGU-CAU (UUAC-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ACG-GCAUAG CAAG--AAAG CUAA-GUUUU Aaa------- ---------- -------a-- 9601 ---------- ---------- (--------- -----)---- ---------- ---ggcuag- 9661 ---au----- -ugccua--| ------(--- )--------- -----aa|AG 9961 UUU(AGGACU A--)AAUUUu auga~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.oliva 10775 bp RNA RNA 03-JAN-1998 DEFINITION mitochondrion Nephroselmis olivacea. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Nephroselmis olivacea. ORGANISM mitochondrion Nephroselmis olivacea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF110138 BASE COUNT 878 a 496 c 668 g 718 t 8015 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~acaaaguA AGCAUUGAA- ----UGGAUG 301 |ACU--AGG| UAC-AAAG-G A|aa------ ---------- ----uagga| -cguu(--ga 361 auaa-----) a|acgaaauc gccauag|a- --aag--(-- ---------- ---------- 421 --gcaaa)-- cuguga---u cuaugga-ua uccc-aa-gg g--------- -----(gaaa 481 )ccc|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ------UAAC |UUUGCGAAC 841 UGA(AACA)U CUAAGUA--- -GCAAA---- ---------- ---------- ---AGGAAAG 901 GAAAUC(-AA CC)GA-G-AC |UCC-GUUA- -GUAG-U(-G GCGA)GCGAA -AGCGGAUU- 961 -AGGCCU------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- GC-|C(AAA) 1321 G--AAGG(UG UUAGC)CCUG UA-------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ------caug aa-caaucga cgcuuucucu gaaagc---- -----uagu- -------aua 1501 uauua----- ---uucu--- ------auu- >--GAGUAAA ACGAA-(--- ---------- 1561 ---acua)-U UUGUUUGAAG ----auGGGG G(GACCA-C) -CCUCCA--A GCCUA-AGUA 1621 ---UCUCUUU G-UAACCGAU AGUG-UA--- -CAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------a 1741 aaa-gaagcc u(aaaaa--) aggcuu---- ---------- -------GUG AA--AUAGAC 1801 ACCUA-AAAU UCGA-UGC-U U-<------- ---------- ---------- ---------- 1861 ----->UCAA UCAguagaag cuuuu--- (--------- 2041 --)----gaa gugacugc-G UACCUU(UU- GCAUA)AUGG |GUC-AGCGA GU-----CA- 2101 AUAAAAAUAG CAA--gcuua a-gcc--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------acu a)----ggug --gagg-cau 2521 aca-(-caaa )--cga<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->aguc u-(gaaua-) -a-ggcaauc uuucuugAAG UUAUU-UUUA 2701 UUG-GACCCG AA-GCCAA-G UG-AUCUAGU UAU-GAG-CA GGCUGAA--- A-AA--GU-A 2761 G(-------- ---------- ---------- ---------- -----uaaa) GCACUUUGGA 2821 GGGCCGAA-C CCAC-GUAU( GUUGCAA-A) AUAC-GGGGA --UGACUUG- UGACUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUUGGAA AUAGCU-GGU UUUCC--GCG AA-AUC-UAU 2941 (-UUAG)GUA GA-GC-GGAA UCAUaa GAA|-GAAAA 3061 G|AGGUAG|A GCACUCa-aU GG-gcu--ag gggggc--(c caaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gcc uua-cu-gau 3301 CCC--Aa-gG AAACUCCG-- AAUG|-CUUU -U-C---UUC ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aaa---G-A -UUCU-AGAC AGACU--UU- GA-GC(-GCU 3481 AAG)GUCCAA AG-UC----G AAAGGG(AAA -CAG)CCC-A GAUCG-A-UU -GC-UAA--- 3541 --GGU-CCCU -AAACAG-U- UACUUAGUG- ---------- GAAAAGGAA- GUAAUAUCGC 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAGGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCCU|U(U- GA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGC-GA-A -AU-UGC|-G CCGAAAAU-- ---------- ---------- ----GUAUCG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAUGUAA CUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCA| G--C-GA|au acuaaa---- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 uuuuca)--- ---uuag-UA -U-----GGU AGCGG-AA|- CG-UUCUGUA A---UUCGUU 4501 G--------A AGCUU-UUCU (GUCA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GG AAAUUAGU-G G|AGAA---| AUCAGAAGUG AGUAUGC-UG 4681 AC|AUGAGUA -ACGAAUAA- AUC-AU-GU- (gaaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUGAU-|CGC C-GAAA-AUC GAA--GGGUU -|----UCUG 4801 CGauc---cg ---------- ----(--cuc gu)c-g|-GC GCAGAG---- ---------- 4861 ---UUAGU-- -CGGUCCCUA A-G-AuA--- auuucc-(-a aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--gga---a au---UuUCG AU-GGGaa-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |--uuc|cua u--------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- -cuagug-uu ugaaa----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<-auuuau gauuguuauc aaga(gcugg uu)ucuuguu aauuuauuaa agau------ 5641 ---------- ---------- ------->-- uuuccuggaa ---aau-uac uag<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>aa- -auua----- --auag---- -ACCGUA|CU 6481 G--AAAACC- -(AACACU)G G|UCGAU-AA GUA-(GAA-U A-----)-UA CUAAGGCGU| 6541 |--GUGAG-A G--AACCAUG -UUGA-AGGA ACUCGGCAAA UUAACC-CCG UAAC(UUAG- 6601 )GGAUAA-GG GGU|ACucuu ---------- -----(---- ---)------ -------aag 6781 -agu|G(UCA )C--AAAAUA GAGAGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUUUG|CU- -AAAUU---- ---------- (--GAAA--- ------)--- ---------- 6901 AAUGAUGUA- UAA-GGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-GGU UAAGAG-GA- 7021 --GAGGU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -----auuaa aaa)-----g cuuu--gaau c-gaagcc-| 7141 CC-AGUA-AA C-|GG-C|-G -GCUGU-(AA CUCUA)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGCA(-U AAGU-)AGCG AC|CU-GCAU GAAUGGUGUA A-CGACUGCU 7261 CU-------- ---------- -------ACU GUCUCCAACA UGGA-CU-CA ----GUGAAA 7321 UU|G|AAUUC UC-CG(U-GA AGAUG)CGGA GUA----CUG GUGGCUAGAC GGGAAG-ACC 7381 CUGUGC-|-A CCUUU--ACU AU|--U-UCU UUA--CAUU| <--------- ---------- 7441 ---------- ---------- --->ggacc- uu-----gau -CAUCUUUG- UGU---AGGA 7501 UAGGUGGGA- -GUC------ ---------- -- --(------- -)-------- -------GAC 7681 AAUCUUGAAA UACCACU|C- ----uuaga- c-g-a-ucua guuc-cuaa- -ccu-uu--- 7741 -----(---- aaa-)----- ---------- ---------- ---------- ---aaagg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-aac caUGU-A-UG -GUA-GG-UA GUUUGACUG( 8161 GGG)CG-GU- C|GCCUCC(- --------UA AAAAGUAAC- )GGAG-GC|G |U|GCGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAA 8401 -GC|--UC-a agcggg<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (ccggaaa-- )----uccgc uG-------- ---------- 8701 ---------- ---------- ---------- ---UAGA|GU (A|UAAUG)G CAU-AAG-CU 8761 U-GC-CUGAC UGUAA-GAU( -ggacac--- )AUCGA-GCA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGGUC-CGGG GA-C------ ---------U UCC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)GG|GUCC 9001 UCGCUUAAC- |GGAUCAAAG GUACGC|CAG G|GAUAACAG |G-CUG-A-U AACCCCCAAG 9061 AG(C--UCUU )AUCGACGGG --GUUGUUUG GC-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGG GC-UG(--AA -GA)AGGUCC CAAG-GGU|U CGGC(UGUUC )GCCGA-UUA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAAA AC|GU-C(GU GA)GACAGUU UGGUUCCUAU 9241 CU|ACCAU-U AG|A|<---- ---------- ---------- ---------- ---------- 9301 >uuuuauaga au-uga-gag aAU-CUG-UC CU--(UAGU- AC(-GAGA)G GACC-)GGGA 9361 U--GG-<--- ---------- ---------- -------->G UGAACCU-AU GGUGUAUCAG 9421 U|-UGU-UCU (ACCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 GGA-GCAUUG CUGA--GUAG CUAC-GUUCA UAU------- ---------- -------GAG 9601 ---------- -AGAAUUGUU (GAAAGC--A UCUUA)A-AC -AA-GAAACU Cu-acucgau 9661 accaa--u-- -ucuug-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>ga| u-----(--- )-------gu acauuuc|UG 9961 UAG(AAGACU A--)CUACAa a--------- ---------- ---------- -------aua 10021 g|gcaugaag ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UUAUACC UUU------- ---------- --------(- ---------- 10141 ---------- -------GUA A)AAAGC--- ---------- ---------- ---------- 10201 -----uuacu a|a|caugua cuaaa-u--- ---------- ---------- -----uauau 10261 c--------- ---------- ---------- ---------- ---cgu---- ---auuuuua 10321 uau~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.polym 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Marchantia polymorpha. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Marchantia polymorpha. ORGANISM Mitochondria Marchantia polymorpha. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M68929 LOCUS MPOMTCG 186608 bp ds-DNA PLN 19-JUN-1992 DEFINITION Marchantia polymorpha mitochondrion, complete genome. ACCESSION M68929 KEYWORDS . SOURCE Mitochondrion Marchantia polymorpha (organelle Mitochondrion Marchantia polymorpha) DNA. ORGANISM Mitochondrion Marchantia polymorpha Eukaryota; Plantae; Embryobionta; Bryophyta; Hepaticopsida; Marchantiidae; Marchantiales; Marchantiineae; Marchantiaceae. REFERENCE 1 (bases 1 to 186608) AUTHORS Oda,K., Yamato,K., Ohta,E., Nakamura,Y., Takemura,M., Nozato,N., Kohchi,T., Ogura,Y., Kanegae,T., Akashi,K. and Ohyama,K. TITLE Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA JOURNAL J. Mol. Biol. 223, 1-7 (1992) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Takemura,M., Oda,K., Yamato,K., Ohta,E., Nakamura,Y., Nozato,N., Akashi,K. and Ohyama,K. TITLE Gene clusters for ribosomal proteins in the mitochondrial genome of a liverwort, Marchantia polymorpha JOURNAL Nucleic Acids Res. 20, 3199-3205 (1992) STANDARD full automatic REFERENCE 3 (sites) AUTHORS Oda,K., Yamato,K., Obta,E., Nakamura,Y., Takemura,M., Nozato,N., Akashi,K. and Ohyama,K. TITLE Transfer RNA genes in the mitochondrial genome from a liverwort, Marchantia polymorpha: the absense of chloroplast-like tRNAs JOURNAL Nucleic Acids Res. 20, 3773-3777 (1992) STANDARD full automatic FEATURES Location/Qualifiers tRNA join(48859..48901,49893..49937) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="gct anticodon" CDS join(51879..52214,55277..56053,57481..57546) /pseudo /gene="nad7" /codon_start=1 rRNA complement(join(146851..148822,149541..150367)) /product="26S ribosomal RNA" /gene="26S rRNA" rRNA complement(join(153544..154453,156861..157925)) /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 827 a 569 c 756 g 647 t 7976 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ua ucaaaaAUAA UGCAUUGGA- ----UGGAUG 301 |CCU--AGG| CAU-UGAG-A A|gga----- ---------- -----UGGA| -cgcu(-uuc 361 aaa------) g|gcgAAAC- GCCAUGG|GG --AGA--(-- ---------- ---------- 421 uaucg--)-- UCUGUGA--U CCAUGGG-UC UCCA-AU-CG G--------- -----(GAAA 481 )CCG|----- --(u----)- ---------- AUCCAAGcgg aagcgucgca u(-uag-u)g 541 ugcugcacua cgcCUUGGAc u--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uucaCAAC |UUAGCGAAC 841 UGA(AACA)U CUAAGUA--- -GCUAA---- ---------- ---------- ---AGGAAAG 901 GAAAUC(-AA CC)GA-G-AC |UCC-GUUA- -GUAG-C(-G GCGA)GCGAA --acg-aUU- 961 -AGGCUU<-- -cucucuuca uucgauuugu ugaga----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->--auug 1201 aaugauggaa aaaccauuaa aggaauugug aaaaagauu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)aa ucuu------ GC-|C(AAA) 1321 G--AAGG(CG AUAGC)C-Ug ua--gcacau uuuuccauug guuuuauuca a-u------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--AAGUAAA ACGCGG(aua ccguguuuga 1561 auuuuga)UC GCUUUUACGC -gaccaAGGG G(GACCA-C) -CCUCUA--A GCCUA-AGUA 1621 ---UUCCUCA A-UGACCGAU AGCG-UA--- -CAAGUACC( -GUGA-)GG- ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC U(aagaa--) AGGG------ ---------- ------AGUG AAAUAGAAA- 1801 ACCUG-AAAU CCGA-UGC-A A-<------- ---------- ---------- ---------- 1861 ----->ACAA UCAGUCGAAG Ga------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- -agcuggcua aguauagaaa acuuuccac> (--------- 2041 --)------U CUAACGGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCGA GU-----AA- 2101 AUGGAAACAG CGAg-cuuaa g-c----(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------cguu a)------gu --guag-gCG 2521 CAA-(ugaag )--UU----- --(------) ---------- ---------G UUGUU-UCUA 2701 UUU-GACCCG AA-AAAAA-U UG-AGCUAUC CAU-GAG-CA GGUUGAA--- G-GG--GC-C 2761 C(-------- ---------- ---------- ---------- ----uaauc) GGGCCUUGGA 2821 GGACCGAA-C CCAC-GCCU( GUG-CAA-A) AGGC-GGGGA --UGACUUG- UGGAUAG-GG 2881 GU(G-AAAG) GCC+AAUC-A G-GAUUUUAU AUAGCU-GGU ACUCC--GCG AA-AUC-UAU 2941 (-UGAG)GUA GA-GC-GUAU CAAA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------g>ua AAU|-GGCCU 3061 G|AGGUAG|A GCACUCA-AU GG-gcu--ag gguggc--(c caaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gcu uga-cc-aac 3301 cCC--AA-GG AAACUCCG-- AAUG|-CAGG -C-C---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gag--UU-U -GUAC-AGAC AGACU--UU- GG-GC(-GCU 3481 AAG)GUCCAA AG-UC----A AGAGGG(AAA -CAG)CCC-A GAUCG-U-AC -GC-UAA--- 3541 --GGU-CCUU -AAGCAA-U- UACUUAGUG- ---------- GAAAAGGAA- GUUAUUGAGC 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UGACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCCU|U(U- GA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGC-UC-A -AU-UGC|-A CCGAAAAU-- ---------- ---------- ----GUAUCG 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---cAAGUGA UUC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCG| A--C-GA|GA Ccuugaaag- ---------- ---------- 4141 -----caucc ucgcgaagcu ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--u uuucaaguGU -C-----GGU AGCGG-AG|- CG-UUCUGUA A---AUCGUC 4501 G--------A AGGUU-GCUG (AUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->CA ACA--ACU-G G|AGAU---| AUCCGAAGUG AUUAUGC-UG 4681 AC|AUGAGUA -ACGA-UAA- AUC-AU-GU- (gaaaa---- ---------- ---------- 4741 ---------- -----)-A-C AUGAU-|CGC C-GAAA-GUU CAA--GGGUU -|----UCUG 4801 CGUUC---AG ---------- ----(--UCA AU)C-U|-AC GCAGAG---- ---------- 4861 ---UGAAU-- -CGGUCCCUA A-G-G-A--- accCCC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GGGcu-u ag---U-CCG AU-GGGUA-- -----cacga ---------- ---------- 5041 ---------- ---------- -----aagu- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- --------ga cgaaguugcu uugacua--u 5461 ugaacaaaaa aaaauuuuuu uug|cguguu uguuaaacuc gugaauugga uuauugggca 5521 |ggccggagg a--------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- cuucCAGGAA ----A----- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- -------aaa cuucgug--- 6421 ---------- --------aa aaaaa->--- ---------- ---------- -ACCGUA|CC 6481 C--CAAACC- -(GACACA)G G|UGAAC-AA GUA-(GAG-C A-----)-UA CUAAGGCGC| 6541 |--UUGAG-A G--AACCAUG -UUGA-AGGA ACUCGGCAAA AUGACC-CCG UAAC(CUCG- 6601 )GGAGAA-GG GGU|GCUCUC cu-------- ---------- ---------- -----agGAA 6781 -AGC|G(GCA )C--AUACCA GGGGGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGUG---- ---------- (--GUAA--- ------)--- ---------- 6901 CACGAUGUA- UAG-AGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-GGU GAAAAG-GA- 7021 --GAAGU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------guuu uaa)-----G CUUC--GAAU G-GAAGCC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCAGU-(AA CUCUA)ACUG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGCA(-U AAGU-)AGCG AC|CU-GCAC GAAUGGUGUA A-CGACUGCC 7261 CC-------- ---------- -------GCU GUCUCCAACA UGGA-CU-CA ----GUGAAA 7321 UU|G|AAUUC UC-CG(U-GA AGAUG)CGGA GUA----CCA ACGGCUAGAC GGUAAG-ACC 7381 CCGUGC-|-A CCUUU--ACU AU|--A-ACU UUG--CGGU| <--------- ---------- 7441 ---------- ---------- --->GACAA- CC-----UUG -AUUGAAUG- UGU---AGGA 7501 UAGGUGGGA- -GGUggc-ga c--------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---aau- -)-------g uug--ccACC 7681 AGUCUUGAAA UACCACU|c- ----uUUCG- U-C-G-AAGG AUGU-CUAA- -CUGGCC--- 7741 -----(aaaa aaaa)----- ---------- ---------- ---------- ---GGCGG<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC ACUGC-A-UG -GUG-GG-UA GUUUUUCUG( 8161 GGG)CG-GA- A|GCCUCC(- --------UA AAGAGUAAC- )GGAG-GU|G |U|GCGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAG 8401 -GC|--UCA- AGCUaa<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uauucca-- )----aaAGC UU-------- ---------- 8701 ---------- ---------- ---------- ---UAGA|GC (G|UAAUG)G UAU-AAG-CC 8761 U-GC-CUGAC UGUGA-GAC( -uuacua--- )GUCGA-ACA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CGGG AG-U------ ---------- CCC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)GG|GCUC 9001 UCGCUCAAC- |GGAUCAAAG GUACGC|CGG G|GAUAACAG |G-CUG-A-U GACUCCCAAG 9061 AG(C--UCUU )AUCGACGGA --GUCGUUUG GC-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGG GU-UG(--AA -GA)AGGUCC CAAG-GGU|U CGGU(UGUUC )GCCGA-UGA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUUCCUAU 9241 CU|ACCGU-U GG|U|<---- ---------- ---------- ---------- ------guuu 9301 >uagAG-AGA AC-UGC-GAG AAG-CCG-AC CC--(UAGU- AC(-GAGA)G GACU-)GGGU 9361 UuuGG-<--- ---------- ---------- -------->A UCAACCU-AU GGUGGACCGG 9421 U|-UGU-UAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GCAGCG CCGG--GUAG CUAA-GUUGG UAU------- ---------- -------GGA 9601 ---------- -AGAACUGCU (GAAAGC--A U-CUA)A-GC -GG-GAAAUC CU-UCUCUAU 9661 ACAAG--U-- -UCUCA-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- --uacAA|GG 9961 UGA(AAGACC A--)UCACUU C--------- ---------- ---------- ------GAUA 10021 G|GCGAGAGG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAGC ACC------- ---------- --------(- ---------- 10141 ---------- -------GCG A)GGUGU--- ---------- ---------- ---------- 10201 ----UCAGCU U|A|CUCGUA CUAaa-a~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.aes.1 10775 bp RNA RNA ~?~???? DEFINITION Mitochondria Triticum aestivum (wheat). ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Triticum aestivum (wheat). ORGANISM Mitochondria Triticum aestivum (wheat). REFERENCE 1 (bases 1 to 17443) AUTHORS No information JOURNAL ~ Oct 1986 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z11889,Z14078 Phylo:Mitochondria,Plant,wheat LOCUS WHTTTARRNG 7242 bp ds-DNA PLN 17-APR-1992 DEFINITION T.aestivum mitochondrion rrn26 gene for rRNA large subunit (26S) ACCESSION Z11889 KEYWORDS 26S rRNA; ribosomal RNA; ribosomal RNA large subunit. SOURCE Triticum aestivum DNA. ORGANISM Triticum aestivum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 2337 to 6440) AUTHORS Falconet,D., Sevignac,M. and Quetier,F. TITLE Nucleotide sequence and determination of the extremities of the 26S ribosomal RNA gene in wheat mitochondria: Evidence for sequence rearrangements in the ribosomal genes of higher plants JOURNAL Curr. Genet. 13, 75-82 (1988) STANDARD full staff_review REFERENCE 2 (bases 1 to 7242) AUTHORS Spencer,D.F., Schnare,M.N., Coulthart,M.B. and Gray,M.W. TITLE Sequence and organization of a 7.2 kilobase pair region of wheat mitochondrial DNA containing the large subunit (26S) rRNA gene JOURNAL Unpublished (1992) STANDARD full automatic REFERENCE 3 (bases 1 to 7242) AUTHORS Gray,M.W. JOURNAL Unpublished (1992) STANDARD full staff_review COMMENT *source: strain=Capitole; *source: clone_library=PstI; *source: clone=P7.2; *source: is_macronuclear=N; *source: is_proviral=N; *source: is_germline=N; From EMBL entry MITTARRNG; dated 07-APR-1992. FEATURES Location/Qualifiers repeat_unit 2543..2612 /rpt_type=tandem /note="70bp repeat. Containsmotif (TCGTATAAAAA); identical to sequenceidentified as promoter for homologous gene inmaize mtDNA" /citation=[3] /citation=[1] repeat_unit 2613..2682 /rpt_type=tandem /note="70bp repeat. Containsmotif (TCGTATAAAAA); identical to sequenceidentified as promoter for homologous gene inmaize mtDNA" /citation=[3] /citation=[1] conflict 2815..2816 /note="replace(2815..2816,'gaa')" /citation=[3] /citation=[1] /partial rRNA 2819..6285 /function="structural/functionalcomponent of mitochondrial ribosome" /standard_name="26S rRNA" /note="5'- and 3'-termini determined by directsequence analysis of isolated 26S rRNA" /product="ribosomal RNA largesubunit (26S)" /gene="rrn26" /citation=[3] /citation=[1] conflict 3520..3522 /note="replace(3520..3522,'ac')" /citation=[3] /citation=[1] /partial conflict 3956..3958 /note="replace(3956..3958,'cca')" /citation=[3] /citation=[1] /partial conflict 4582..4585 /note="replace(4582..4585,'acgt')" /citation=[3] /citation=[1] /partial conflict 4692..4694 /note="replace(4692..4694,'tg')" /citation=[3] /citation=[1] /partial conflict 4772..4774 /note="replace(4772..4774,'tc')" /citation=[3] /citation=[1] /partial conflict 5636..5638 /note="replace(5636..5638,'cg')" /citation=[3] /citation=[1] /partial conflict 6258..6261 /note="replace(6258..6261,'gg')" /citation=[3] /citation=[1] /partial misc_feature 6329..6443 /standard_name="t-element" /note="tRNA-likeelement (t4)" /citation=[3] /citation=[2] /citation=[1] BASE COUNT 2085 a 1593 c 1827 g 1737 t ORIGIN BASE COUNT 895 a 811 c 1008 g 753 t 7308 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~AUCA UGCAUUGGA- ----UGGAUG 301 |CCC--GGG| CAU-UGAG-A A|gga----- ---------- -----AGGA| -cgcu(-uuc 361 aga------) g|gcgAAAG- GCCAUGG|GG --AGA--(-- ---------- ---------- 421 gauuuu-)-- UCUGUGA--U CCAUGGA-Uc UCCG-AU-CG G--------- -----(GAAA 481 )CCG|----- --(u----)- ---------- AUCCAAGcuc cgugg----- -(cuag-u)- 541 -----cugcg cucUUUGGAc u--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uuucAAAC |UUAGCGAAC 841 UGA(AACA)U CUGAGUA--- -GCUAA---- ---------- ---------- ---AGGAAGG 901 AAAAUC(-AA CC)GA-G-AC |CCC-GUUA- -GUAG-C(-G GCGA)GCGAG -AGCGGAAC- 961 AAGGGUU<-- --uucaucaa aagaaauccg aagcgguuuc auucgauuug uuguggauug 1021 gaugau-gga aaaaccagca agcagcaagc guaguuagaa aaguugccgu agcgcgcccu 1081 acggaguugu acaaagucag caaccguuuu ggggcgcaag cauaggcaac acaggac--- 1141 ---------- ------ugau gac------- ---------- ---------- --->------ 1201 gggguggggc gcgcagugaa cugguuuucu aaaaagauu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)ga uccg------ GC-|C(AAA) 1321 G--AAGG(UG AUAGC)CCUg uu--cauucg uucccauggu ucgauccuuc c-<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--CAGUAAA ACGCGG(--- -cguguucga 1561 augauga)UC GCUUUUACGC -gagaaAGGG G(GACCA-C) -CCUCUA--A GCCUA-AGUA 1621 ---UUCCUCA A-UGACCGAU AGCG-UA--- -CAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC C(-aauc--) GGGG------ ---------- ------AGUG CAAUAGAGA- 1801 ACCUG-AGAU CCGA-UGC-G A-<------- ---------- ---------- ---------- 1861 ----->ACAA UCAGUCGAAG Gagcg---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------gagc ---------- ---------- --------gc gggcgcacu> (--------- 2041 --)---CACU CUAACGGC-G UACCUU(UC- GCAUG)AUGG |GUC-AGCGA GG-----AA- 2101 AUGGGAACAG CGG--cuuaa g-cc---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------auu a)-----ggu --guag-gCG 2521 CUU-(uccag )--AG----- --(------) ---------- ---------G UUCUU-CCUA 2701 UUU-GACCCG AA-ACCGA-U CG-AUCUAGC CAU-GAG-CA GGUUGAA--- G-AG-AGC-U 2761 C(-------- ---------- ---------- ---------- ----uaa-c) AGGCCUUGGA 2821 GGACCGAA-C CCAC-GUAU( GUGGCAA-A) AUAC-GGGGA --UGACUUG- UGGCUAG-GG 2881 GU(G-AAAG) GCC-AACC-A A-GAUCGGAU AUAGCU-GGU UUUCC--GCG AA-AUC-UAU 2941 (-UUCA)GUA GA-GC-GUAU GAug<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->uc GAU|-GGCCC 3061 G|AGGUAG|A GCACUCA-AU GG-gcu--ag gguggc--(c cccauuuc)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gcu uua-cc-aac 3301 cCC--AG-GG AAACUCCG-- AAUA|-CAGG -C-CGUCauc ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -c----uu-a -GUAC-AGAC AGACUgaUU- GG-GU(-GCU 3481 AAG)AUCCAA AG-UC----G AGAGGG(AAA -CAG)CCC-A GAUCG-U-AC -GC-UAA--- 3541 --GGU-CCCU -AAGCAA-U- CACUUAGUG- ---------- GAAAAGGAA- GUGAUCGAGC 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UGACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCCU|U(U- GA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGC-UC-C -AU-GGC|-A CCGAAAAU-- ---------- ---------- ----GUCUCA 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---cAAGUGA UUC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCG| A--C-GA|GA Ccuugaaag- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(c 4441 agcu--)--u uuucaaguGU -C-----AGU AGCGG-GA|- CG-UUCUGUC A---AUCGGG 4501 G--------A AGGUU-UUUG (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->CA AGA--CCU-G G|AGAU---| AUCAGAAGUG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-GAA- AUC-CU-GU- (gaaaa---- ---------- ---------- 4741 ---------- -----)-A-C ACGAU-|CGC Cugcca-GUG GAA--GGCUU -|----UCUG 4801 CGUUC---AG ---------- ----(--UCA AU)C-U|-AC GCAGAG---- ---------- 4861 ---UGAAU-- -CGGUCCCUA A-G-G-A--- accCCC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GGGcugc cg---U-CCG AU-GGGUA-- -----cacga ---------- ---------- 5041 ---------- ---------- -----aagu- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- --------ga cgaag----- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- uugcuuugac uacugaacca ugccuggauc gucggagcga 5761 auuggaugau cgggccgagg gcugcccccu cuuccccucg cucuccuuuc cuuaauauuc 5821 accgucgagu caucaaagcc gucaacuaau ucagaggggc ucggcuggcc cggucgcccu 5881 acgcuacugg cgcuuccaaa ggcgaagcuc ucgucuuugg cgaccagcaa a--------- 5941 cggagggcua aaaccuguag uuuugaagca agggaugagc gcgaaagccg uugcgcuucc 6001 guacacgcgc auac------ ---------- ---------- ---------- -------guu 6061 uucuugcugg ggcggacacg gauuuc---- ---------u cucuaaaggc gaagaaaaag 6121 aagugggcga acacucggcc cagcgggcga acaugccggc ucc-ggcucc gcgcaccugc 6181 ugacaccuuu cgaagcacuu ucacguguga accgaagucg ucuugccgaa cuccuuccuu 6241 ucucauuuca guccucgccu uuuucaucuu ccguaggggc cuuuagucuu uugauuagag 6301 uggaggucgc gagagagcag agcguaccgc ccugccauag ucgcgaggau cuuaauaguc 6361 ggucgcgacu guugucauag ucaacgacgg uugaaacuuc caggaaaaaa cuucgaauug 6421 ggagggcgau ccucccggug aacug->--- ---------- ---------- -ACCGUA|CC 6481 C--CAAACC- -(GACACA)G G|UGAAC-AA GUA-(GAG-U A-----)-UA CUAGGGCGC| 6541 |-gUCGAG-A G--AACCAUG -UCGA-AGGA ACUCGGCAAA AUGACC-CCG UAAC(UUCG- 6601 )GGAGAA-GG GGU|GCUCUC cu-------- ---------- ---------- -----agGAA 6781 -AGC|G(GCA )C--AUACCA GGGGGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGUG---- ---------- (--GUAA--- ------)--- ---------- 6901 CACGAUGUA- UAG-AGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-GGU CGGAAG-GA- 7021 --GAAGU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------guga uaa)-----G CUUU--GAAU G-GAAGCC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCAGU-(AA CUCUA)ACUG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGCA(-U AAGU-)AGCG AC|CU-GCAC GAAUGGUGUA A-CGACUGCC 7261 CC-------- ---------- -------GCU GUCUCCGACA UGGA-CC-CG ----GUGAAA 7321 UU|G|AAUUC UC-CG(U-GA AGAUG)CGGA GUA----CCA ACGGCUAGAC GGUAAG-ACC 7381 CCGUGC-|-A CCUUG--ACU AU|--A-GCU UCG--CAGU| <--------- ---------- 7441 ---------- ---------- --->GACAA- CC-----UUG -AUCGAAUG- UGU---AGGA 7501 UAGGUGGGA- -GGUggu--- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(gacacac a)-------- --a--cgACC 7681 AAUCCUGAAA GACCACU|c- ----uUUCG- U-C-U-AAGG AUGC-CUAA- -CCG-CCgca 7741 ccga-(---u cau-)-ucgg ---------- ---------- --------gg gg-GGCGG<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC ACUGC-G-AG -GUG-GG-UA GUUUAUCUG( 8161 GGG)CG-GA- U|GCCUCC(- --------UA AAGAGUAAC- )GGAG-GU|G |U|GCGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAG 8401 -GC|--UCA- AGCG--<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uugauuc-- )------UGC UC-------- ---------- 8701 ---------- ---------- ---------- ---GUGA|GC (G|UAAUG)G UAU-AAG-CC 8761 U-GC-CUGAC UGUGA-GAC( -cgacug--- )GUCGA-ACA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CGGG AG-U------ ---------- CCC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)GG|GCUC 9001 UCGCUCAAC- |GGAUCAAAG GUACGC|CGG G|GAUAACAG |G-CUG-A-U GACUCCCAAG 9061 AG(C--UCUU )AUCGACGGA --GUCGUUUG GC-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGG GU-UG(--AA -GA)AGGUCC CAAG-GGU|U CGGU(UGUUC )GCCGA-UGA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUUCCUAU 9241 CU|ACCGU-U GG|U|<---- ---------- ---------- ---------- ------guua 9301 >AAGGG-AGA AC-UGC-GAG GAG-CCA-GC CC--(UAGU- AC(-GAGA)G GACU-)GGGC 9361 U--GG-<--- ---------- ---------- -------->G UCAACCU-AU GGUGUACCGG 9421 U|-UGU-UAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GCAGCG CCGG--GCAG CUAA-GUUGG UAU------- ---------- -------GGA 9601 ---------- -AGAACUGCU (g-------- --cgc)C-GC -GG-GAAAUC CU-UCUCUAU 9661 ACAAG--U-- -UCUCG-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -uacg-A|GG 9961 UUU(UUGAAC A--)GAACUU C--------- ---------- ---------- ------GAUA 10021 G|GCGAGAGG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAGC ACC------- ---------- --------(- ---------- 10141 ---------- -------GCG A)GGUGU--- ---------- ---------- ---------- 10201 ----GAAGCG A|U|CUCGUA CUAaa----- ---------- ---------- -------cg- 10261 aa-------- ---------- ---------- ---------- ---------- ---------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.aes.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Triticum aesticum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Triticum aesticum. ORGANISM Mitochondria Triticum aesticum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M37274 LOCUS WHTMT26SRR 4103 bp ds-DNA ORG 01-AUG-1990 DEFINITION Wheat mitochondrial 26S rRNA gene, complete cds. ACCESSION M37274 KEYWORDS 26S ribosomal RNA; ribosomal RNA. SOURCE Wheat mitochondrial DNA. ORGANISM Mitochondrion Triticum aestivum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 1 to 4103) AUTHORS Falconet,D., Sevignac,M. and Quetier,F. TITLE Nucleotide sequence and determination of the extremities of the 26S ribosomal RNA gene in wheat mitochondria: Evidence for sequence rearrangements in the ribosomal genes of higher plants JOURNAL Curr. Genet. 13, 75-82 (1988) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 483..3947 /note="mature 26S ribosomal RNA" BASE COUNT 1101 a 945 c 1152 g 905 t ORIGIN BASE COUNT 965 a 835 c 1036 g 785 t 7154 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~aAUCA UGCAUUGGA- ----UGGAUG 301 |CCC--GGG| CAU-UGAG-A A|gga----- ---------- -----AGGA| -cgcu(-uuc 361 aga------) g|gcgAAAG- GCCAUGG|GG --AGA--(-- ---------- ---------- 421 gauuuu-)-- UCUGUGA--U CCAUGGA-UC UCCG-AU-CG G--------- -----(GAAA 481 )CCG|----- --(u----)- ---------- AUCCAAGcuc cgugg----- -(cuag-u)- 541 -----cugcg cucUUUGGAc u--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uuucAAAC |UUAGCGAAC 841 UGA(AACA)U CUGAGUA--- -GCUAA---- ---------- ---------- ---AGGAAGG 901 AAAAUC(-AA CC)GA-G-AC |CCC-GUUA- -GUAG-C(-G GCGA)GCGAG -AGCGGAAC- 961 AAGGGUU<-- --uucaucaa aagaaauccg aagcgguuuc auucgauuug uuguggauug 1021 gaugau-gga aaaaccagca agcagcaagc guaguuagaa aaguugccgu agcgcgcccu 1081 acggaguugu acaaagucag caaccguuuu ggggcgcaag cauaggcaac acaggac--- 1141 ---------- ------ugau gac------- ---------- ---------- --->------ 1201 gggguggggc gcgcagugaa cugguuuucu aaaaagauu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)ga uccg------ GC-|C(AAA) 1321 G--AAGG(UG AUAGC)CCUg uu--cauucg uucccauggu ucgauccuuc c-<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--CAGUAAA ACGCGG(--- -cguguucga 1561 augauga)UC GCUUUUACGC -gagaaAGGG G(GACCA-C) -CCUCUA--A GCCUA-AGUA 1621 ---UUCCUCA A-UGACCGAU AGCG-UA--- -CAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC C(-aauc--) GGGG------ ---------- ------AGUG CAAUAGAGA- 1801 ACCUG-AGAU CCGA-UGC-G A-<------- ---------- ---------- ---------- 1861 ----->ACAA UCAGUCGAAG Gagcg---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ga-c ---------- ---------- --------gc gggcgcacu> (--------- 2041 --)---CACU CUAACGGC-G UACCUU(UC- GCAUG)AUGG |GUC-AGCGA GG-----AA- 2101 AUGGGAACAG CGG--cuuaa g-cc---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------auu a)-----ggu --guag-gCG 2521 CUU-(uccag )--AG----- --(------) ---------- ---------G UUCUU-CCUA 2701 UUU-GACCCG AA-ACCGA-U CG-AUCUAGC CAU-GAG-CA GGUUGAA--- G-AG-AGC-U 2761 C(-------- ---------- ---------- ---------- ----uaa-c) AGGCCUUGGA 2821 GGACCGAA-C CCAC-GUAU( GUGGCAA-A) AUAC-GGGGA --UGACUUG- UGGCUAG-GG 2881 GU(G-AAAG) GCC-AACC-A A-GAUCGGAU AUAGCU-GGU UUUCC--GCG AA-AUC-UAU 2941 (-UUCA)GUA GA-GC-GUAU GAug<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->uc GAU|-GGCCC 3061 G|AGGUAG|A GCACUCA-AU GG-gcu--ag gguggc--(c cccauuuc)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gcu uua-cc-aac 3301 cCC--AG-GG AAACUCCG-- AAUA|-CAGG -C-CGUCauc ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -c----uu-a -GUAC-AGAC AGACUgaUU- GG-GU(-GCU 3481 AAG)AUCCAA AG-UC----C AGAGGG(AAA -CAG)CCC-A GAUCG-U-AC -GC-UAA--- 3541 --GGU-CCCU -AAGCAA-U- CACUUAGUG- ---------- GAAAAGGAA- GUGAUCGAGC 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UGACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCCU|U(U- GA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGC-UC-C -AU-GGC|-A CCGAAAAU-- ---------- ---------- ----GUCUCA 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---cAAGUGA UUC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCG| A--C-GA|GA Ccuugaaag- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(c 4441 agcu--)--u uuucaaguGU -C-----AGU AGCGG-GA|- CG-UUCUGUC A---AUCGGG 4501 G--------A AGGUU-UUUG (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->CA AGA--CCU-G G|AGAU---| AUCAGAAGUG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-GAA- AUC-CU-GU- (gaaaa---- ---------- ---------- 4741 ---------- -----)-A-C ACGAU-|CGC Cugcca-GUG GAA--GGCUU -|----UCUG 4801 CGUUC---AG ---------- ----(--UCA AU)C-U|-AC GCAGAG---- ---------- 4861 ---UGAAU-- -CGGUCCCUA A-G-G-A--- accCCC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GGGcugc cg---U-CCG AU-GGGUA-- -----cacga ---------- ---------- 5041 ---------- ---------- -----aagu- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- --------ga cgaag----- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- uugcuuugac uacugaacca ugccuggauc gucggagcga 5761 auuggaugau cgggccgagg gcugcccccu cuuccccucg cucuccuuuc cuuaauauuc 5821 accgucgagu caucaaagcc gucaacuaau ucagaggggc ucggcuggcc cggucgcccu 5881 acgcuacugg cgcuuccaaa ggcgaacguc ucgucuuugg cgaccagcaa a--------- 5941 cggagggcua aaaccuguag uuuugaagca agggaugagc gcgaaagccg uugcgcuucc 6001 guacacgcgc auac------ ---------- ---------- ---------- -------guu 6061 uucuugcugg g-cggacacg gauuuc---- ---------u cucuaaaggc gaagaaaaag 6121 aagugggcga acacucggcc cagcgggcga acaugccggc ucccggcucc gcgcaccugc 6181 ugacaccuuu cgaagcacuu ucacguguga accgaagucg ucuugccgaa cuccuuccuu 6241 ucucauuuca guccucgccu uuuucaucuu ccguaggggc cuuuagucuu uugauuagag 6301 uggaggucgc gagagagcag agcguaccgc ccugccauag ucgcgaggau cuuaauaguc 6361 ggucgcgacu guugucauag ucaacgacgg uugaaacuuc caggaaaaaa cuucgaauug 6421 ggagggcgau ccucccggug aacug->--- ---------- ---------- -ACCGUA|CC 6481 C--CAAACC- -(GACACA)G G|UGAAC-AA GUA-(GAG-U A-----)-UA CUAGGGCGC| 6541 |-gUCGAG-A G--AACCAUG -UCGA-AGGA ACUCGGCAAA AUGACC-CCG UAAC(UUCG- 6601 )GGAGAA-GG GGU|GCUCUC cu-------- ---------- ---------- -----agGAA 6781 -AGC|G(GCA )C--AUACCA GGGGGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGUG---- ---------- (--GUAA--- ------)--- ---------- 6901 CACGAUGUA- UAG-AGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-GGU CGGAAG-GA- 7021 --GAAGU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------guga uaa)-----G CUUU--GAAU G-GAAGCC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCAGU-(AA CUCUA)ACUG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGCA(-U AAGU-)AGCG AC|CU-GCAC GAAUGGUGUA A-CGACUGCC 7261 CC-------- ---------- -------GCU GUCUCCGACA UGGA-CC-CG ----GUGAAA 7321 UU|G|AAUUC UC-CG(U-GA AGAUG)CGGA GUA----CCA ACGGCUAGAC GGUAAG-ACC 7381 CCGUGC-|-A CCUUG--ACU AU|--A-GCU UCG--CAGU| <--------- ---------- 7441 ---------- ---------- --->GACAA- CC-----UUG -AUCGAAUG- UGU---AGGA 7501 UAGGUGGGA- -GGUggu--- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(gacacac a)-------- --a--cgACC 7681 AAUCCUGAAA GACCACU|c- ----uUUCG- U-C-U-AAGG AUGC-CUAA- -CCG-CCgca 7741 ccga-(---u cau-)-ucgg ---------- ---------- --------gg gggGGCGG<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC ACUGC-G-AG -GUG-GG-UA GUUUAUCUG( 8161 GGG)CG-GA- U|GCCUCC(- --------UA AAGAGUAAC- )GGAG-GU|G |U|GCGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAG 8401 -GC|--UCA- AGCG--<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uugauuc-- )------UGC UC-------- ---------- 8701 ---------- ---------- ---------- ---GUGA|GC (G|UAAUG)G UAU-AAG-CC 8761 U-GC-CUGAC UGUGA-GAC( -cgacug--- )GUCGA-ACA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CGGG AG-U------ ---------- CCC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)GG|GCUC 9001 UCGCUCAAC- |GGAUCAAAG GUACGC|CGG G|GAUAACAG |G-CUG-A-U GACUCCCAAG 9061 AG(C--UCUU )AUCGACGGA --GUCGUUUG GC-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGG GU-UG(--AA -GA)AGGUCC CAAG-GGU|U CGGU(UGUUC )GCCGA-UGA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUUCCUAU 9241 CU|ACCGU-U GG|U|<---- ---------- ---------- ---------- ------guua 9301 >AAGGG-AGA AC-UGC-GAG GAG-CCA-GC CC--(UAGU- AC(-GAGA)G GACU-)GGGC 9361 U--GG-<--- ---------- ---------- -------->G UCAACCU-AU GGUGUACCGG 9421 U|-UGU-UAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GCAGCG CCGG--GCAG CUAA-GUUGG UAU------- ---------- -------GGA 9601 ---------- -AGAACUGCU (g-------- --cgc)C-GC -GG-GAAAUC CU-UCUCUAU 9661 ACAAG--U-- -UCUCG-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -uacg-A|GG 9961 UUU(UUGAAC A--)GAACUU C--------- ---------- ---------- ------GAUA 10021 G|GCGAGAGG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAGC ACC------- ---------- --------(- ---------- 10141 ---------- -------GCG A)GGUG---- ---------- ---------- ---------- 10201 -----AAGCG A|U|CUCGUA CUAaa----- ---------- ---------- -------cg- 10261 a--------- ---------- ---------- ---------- ---------- ---------- 10321 --------|a uggaaauuga caacaauaaa aaaaacauaa cuuagaaaga gagguucuga 10381 aagguaaaag gacuggaaau ccuaaaaaag cgcccuuuga cucgaaauca aauuugugcu 10441 agugguucga auccacaaca gaacaaugaa ugaaugaaau gaaug~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Z.mays 10775 bp RNA RNA 10-JAN-1984 DEFINITION Mitochondria Zea maize. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Zea maize. ORGANISM Mitochondria Zea maize. REFERENCE 1 (bases 1 to 17443) AUTHORS No information JOURNAL May 10 1984 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: K01868 Phylo:Mitochondria,Plant,Zea BASE COUNT 909 a 832 c 1026 g 782 t 7226 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ uguucgacgc 181 uaucgaaa-- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AUCA UGCAUUGGA- ----UGGAUG 301 |CCC--GGG| CAU-UGAG-A A|gga----- ---------- -----AGGA| -cgcu(-uuc 361 aga------) g|gcgAAAG- GCCAUGG|GG --AGA--(-- ---------- ---------- 421 gagagcg)-- UCUGUGA--U CCAUGGA-UC UCCG-AU-CG G--------- -----(GAAA 481 )CCG|----- --(u----)- ---------- AUCCAAGcuc cgugg----- -(cuag-u)- 541 -----cugcg cucUUUGGAc u--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uuucAAAC |UUAGCGAAC 841 UGA(AACA)U CUGAGUA--- -GCUAA---- ---------- ---------- ---AGGAAGG 901 AAAAUC(-AA CC)GA-G-AC |CCC-GUUA- -GUAG-C(-G GCGA)GCGAG -AGCGGAAC- 961 AAGGGUU<-- --uucaucaa aagaaauccg aagcgguuuc auucgauuug uuguggauug 1021 gaugau-gga aaaaccagca agcagcaagc guag---gcu guguugccgu agcgcgcc-u 1081 acggaguugu acaaagucag ca------uu ggggcgcaag cauaggcaac acaggac--- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 gggguggggc gcgcagugaa cugguuuucu aaaaagauu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)ga uccg------ GC-|C(AAA) 1321 G--AAGG(UG AUAGC)CCUg uu--cauucg uucccauggu ucgauccuuc c-<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--CAGUAAA ACGCGG(--- -cguguucga 1561 augauga)UC GCUUUUACGC -gagaaAGGG G(GACCA-C) -CCUCUA--A GCCUA-AGUA 1621 ---UUCCUCA A-UGACCGAU AGCG-UA--- -CAAGUACC( -GUGA-)GG- ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC C(-aauc--) G-GG------ ---------- ------AGUG CAAUAGAGA- 1801 ACCUG-AGAU CCGA-UGC-G A-<------- ---------- ---------- ---------- 1861 ----->ACAA UCAGUCGAAG Gagcg---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ga-c ---------- ---------- --------gc gggcgcacu> (--------- 2041 --)---CACU CUAACGGC-G UACCUU(UC- GCAUG)AUGG |GUC-AGCGA GG-----AA- 2101 AUGGGAACAG CGG--cuuaa g-cc---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------auu a)-----ggu --guag-gCG 2521 CUU-(uccag )--AG----- --(------) ---------- ---------G UUCUU-CCUA 2701 UUU-GACCCG AA-ACCGA-U CG-AUCUAGC CAU-GAG-CA GGUUGAA--- G-AG-AGC-U 2761 C(-------- ---------- ---------- ---------- ----uaa-c) AGGCCUUGGA 2821 GGACCGAA-C CCAC-GUAU( GUGGCAA-A) AUAC-GGGGA --UGACUUG- UGGCUAG-GG 2881 GU(G-AAAG) GCC-AACC-A A-GAUCGGAU AUAGCU-GGU UUUCC--GCG AA-AUC-UAU 2941 (-UUCA)GUA GA-GC-GUAU GAug<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->uc GAU|-GGCCC 3061 G|AGGUAG|A GCACUCA-AU GG-gcu--ag gguggc--(c cccauuuc)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gcu uua-cc-aac 3301 cCC--AG-GG AAACUCCG-- AAUA|-CAGG -C-CGUCauc ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -c----UU-a -GUAC-AGAC AGACUgaUU- GG-GU(-GCU 3481 AAG)AUCCAA AG-UC----G AGAGGG(AAA -CAG)CCC-A GAUCG-U-AC -GC-UAA--- 3541 --GGU-CCCU cAAGCAA-U- CACUUAGUG- ---------- GAAAAGGAA- GUGAUCGAGC 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UGACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCCU|U(U- GA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGC-UC-C -AU-GGC|-A CCGAAAAU-- ---------- ---------- ----GUCUCA 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---cAAGUGA UUC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCG| A--C-GA|GA Ccuugaaag- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(c 4441 ugcu--)--u uuucaaguGU -C-----AGU AGCGG-GA|- CG-UUCUGUC A---AUCGGG 4501 G--------A AGGUU-UUUG (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->CA AGA--CCU-G G|AGAU---| AUCAGAAGUG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-GAA- AUC-CU-CU- (caaaa---- ---------- ---------- 4741 ---------- -----)-A-C ACGAU-|CGC Cugcca-GUG GAA--GGCUU -|----UCUG 4801 CGUUC---AG ---------- ----(--UCA AU)C-U|-AC GCAGAG---- ---------- 4861 ---UGAAU-- -CGGUCCCUA A-G-G-A--- acuCCC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GGGcugc cg---U-CCG AU-GGGUA-- -----cacga ---------- ---------- 5041 ---------- ---------- -----aagu- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- --------ga cgaag----- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- uugcuuugac uacugaacca ugccuggauc gucggagcga 5761 auuggaugau cgggccgagg gcugcccccu cuuccccucg cucuccuuuc cuuaauauuc 5821 accgucgagu caucaaagcc gucaacuaau ucggaggggc ucggcuggcc cggucgcccu 5881 acgcuacugg cgcuuccaaa ggcgaacguc ucgucuuugg cgaccagcaa agcaaacgga 5941 gggagggcua aaaccuuucg uuuugaagca agggaugagc gcgaaagccg uugcgcuucc 6001 guacacgcgc auacucuugc uccgucgcgc guuagguuag guuaguacuu aguacuuaac 6061 uuaguacaau aacgcgcagc cguuuugggc ggacacgguu cucuaaaggc gaagacucug 6121 aagugggcga acacucgccg cagugggcga acaugccggc ucccggcucc gcgcaccugc 6181 ugacaccuuu cgaagcacuu ucacguguga accgaagucg ucuug----- -uccuuccuu 6241 ucucauuuca guccucgccu uuuucaucuu ccguaggggc cuuuagucuu uugauuagag 6301 uagaggucgc gagagagcag agcguaccgc ccugccauag ucgcgaggau cuuaauaguc 6361 ggucgcgacu guugucauag ucaacgacgg uuuaaacuuc caggaaaaaa cuucguauug 6421 ggagggcgau ccucccggug aacug->--- ---------- ---------- -ACCGUA|CC 6481 C--CAAACC- -(GACACA)G G|UGAAC-AA GUA-(GAG-U A-----)-UA CUAGGGCGC| 6541 |-gUCGAG-A G--AACCAUG -UCGA-AGGA ACUCGGCAAA AUGACC-CCG UAAC(UUCG- 6601 )GGAGAA-GG GGU|GCUCUC cu-------- ---------- ---------- -----agGAA 6781 -AGC|G(GCA )C--AUACCA GGGGGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGUG---- ---------- (--GUAA--- ------)--- ---------- 6901 CACGAUGUA- UAG-AGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-GGU CGGAAG-GA- 7021 --GAAGU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------guga uaa)-----G CUUU--GAAU G-GAAGCC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCAGU-(AA CUCUA)ACUG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGCA(-U AAGU-)AGCG AC|CU-GCAC GAAUGGUGUA A-CGACUGCC 7261 CC-------- ---------- -------GCU UGCUCCGACA UGGA-CC-GG ----GUGAAA 7321 UU|G|AAUUC UC-CG(U-GA AGAUG)CGGA GUA----CCA ACGGCUAGAC GGUAAG-ACC 7381 CCGUGC-|-A CCUUG--ACU AU|--A-GCU UCG--CAGU| <--------- ---------- 7441 ---------- ---------- --->GACAA- CC-----UUG -AUCGAAUG- UGU---AGGA 7501 UAGGUGGGA- -GGUggu--- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(gacacac a)-------- --a--cgACC 7681 AAUCCUGAAA GACCACU|c- ----uUUCG- U-C-U-AAGG AUGC-CUAA- -CCG-CCgca 7741 ccga-(---u cau-)-ucgg ---------- ---------- --------gg gggGGCGG<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC ACUGC-G-AG -GUG-GG-UA GUUUAUCUG( 8161 GGG)CG-GA- U|GCCUCC(- --------UA AAGAGUAAC- )GGAG-GU|G |U|GCGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAG 8401 -GC|--UCA- AGCG--<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uugauuc-- )------UGC UC-------- ---------- 8701 ---------- ---------- ---------- ---GUGA|GC (G|UAAUG)G UAU-AAG-CC 8761 U-GC-CUGAC UGUGA-GAC( -cgacug--- )-UCGA-ACA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CGGG AG-U------ ---------- CCC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGC AA)GG|GCUC 9001 UCGCUCAAC- |GGAUCAAAG GUACGC|CGG G|GAUAACAG |G-CUG-A-U GACUCCCAAG 9061 AG(C--UCUU )AUCGACGGA --GUCGUUUG GC-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGG GU-UG(--AA -GA)AGGUCC CAAG-GGU|U CGGU(UGUUC )GCCGA-UGA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU-C(GU GA)GACAGUU UGGUUCCUAU 9241 CU|ACCGU-U GG|U|<---- ---------- ---------- ---------- ------guua 9301 >aagGG-AGA AC-UGC-GAG GAG-CCA-AC CC--(UAGU- AC(-GAGA)G GACU-)GGGU 9361 U--GG-<--- ---------- ---------- -------->G UCAACCU-AU GGUGUACCGG 9421 U|-UGU-UAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GCAGCG CCGG--GCAG CUAA-GUUGG UAU------- ---------- -------GGA 9601 ---------- -AGAACUGCU (g-------- --cgc)C-GC -GG-GAAAUC CU-UCUCUAU 9661 ACAAG--U-- -UCUCG-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -uacg-A|GG 9961 UUU(UUGAAC A--)GAACUU C--------- ---------- ---------- ------GAUA 10021 G|GCGAGAGG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAGC ACC------- ---------- --------(- ---------- 10141 ---------- -------GCG A)GGUGU--- ---------- ---------- ---------- 10201 ----GAAGCG A|U|CUCGUA CUAaa----- ---------- ---------- -------cg- 10261 aa-------- ---------- ---------- ---------- ---------- ---------- 10321 --------|u ggaacuuucc aaccug~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.berte 10775 bp RNA RNA 20-JAN-1985 DEFINITION Mitochondria Oenothera berteriana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Oenothera berteriana. ORGANISM Mitochondria Oenothera berteriana. REFERENCE 1 (bases 1 to 17443) AUTHORS No information JOURNAL 505 (1985) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X02559 Phylo:Mitochondria,Plant,Oenothera BASE COUNT 848 a 743 c 936 g 738 t 7510 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ gguuaggggg 181 guacaagauc gaaa------ ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGAA UGCAUUGGA- ----UGGAUG 301 |CCC--GGG| CAU-UGAG-A A|gga----- ---------- -----AGGA| -cgcu(-uuc 361 aga------) g|gcgAAAG- GCCAUGG|GG --AGA--(-- ---------- ---------- 421 uaccg--)-- UCUGUGA--U CCAUGGA-UC UCCG-AU-CG G--------- -----(GAAA 481 )CCG|----- --(u----)- ---------- AUCCAAGcuc cgugg----- -(cuag-u)- 541 -----cugcg cucUUUGGAc u--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uuucAAAC |UUAGCGAAC 841 UGA(AACA)U CUGAGUA--- -GCUAA---- ---------- ---------- ---AGGAAGG 901 GAAAUC(-AA CC)GA-G-AC |UCC-GUUA- -GUAG-C(-G GCGA)GCGAG -AGCGGAUU- 961 GGGGCUU<-- --ugaagaaa aacaaacacg ccguuuagag ccagccucuc cuguugaguc 1021 gaguuacuuc guuccucagc uucguguuca cuucuuuuuc gccagguuuc auucgauuug 1081 uuguggauug gaugauggau aaaccagcaa gccgccgcuc uuuccuaaag guaaaggagc 1141 aacaugccac ucg-accaac ggg------- ---------- ---------- --->------ 1201 agaggagcga aagcagugaa cuguaauugu gaaaagguu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)ga ucug------ GC-|C(AAA) 1321 G--AAGG(UG AUAGC)CCUg ua--gauucg uucccauggu ucgauccuuc c-<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--CAGUAAA ACGCGG(--- -cguguucga 1561 auucuga)UC GCUUUUACGC -gagaaAGGG G(GACCA-C) -CCUCUA--A GCCUA-AGUA 1621 ---UUCCUCA A-UGACCGAU AGCG-UA--- -CAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC U(-auuu--) AGGG------ ---------- ------AGUG CAAUAGAGA- 1801 ACCUG-AGAU CCGA-UGC-G A-<------- ---------- ---------- ---------- 1861 ----->ACAA UCAGUCGAAG Gagcg---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------gagc aacgagccuu uacuugagau ucucuccgua aagcgcacu> (--------- 2041 --)---CACU CUAACGGC-G UACCUU(UU- GCAUG)AUGG |GUC-AGCGA GG-----AA- 2101 AUGGGAACAG CGG--cuuaa g-cc---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------auu a)-----ggu --guag-gCG 2521 CUU-(uccag )--AG----- --(------) ---------- ---------G UUCUU-CCUA 2701 UUU-GACCCG AA-ACCGA-U CG-AUCUAGC CAU-GAG-CA GGUUGAA--- G-AG-AGC-U 2761 C(-------- ---------- ---------- ---------- ----uaa-c) AGGCCUUGGA 2821 GGACCGAA-C CCAC-GUAU( GUGGCAA-A) AUAC-GGGGA --UGACUUG- UGGCUAG-GG 2881 GU(G-AAAG) GCC-AACC-A A-GAUCGGAU AUAGCU-GGU UUUCC--GCG AA-AUC-UAU 2941 (-UUCA)GUA GA-GC-GUAU GAug<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->uc gau|-GGCCC 3061 G|AGGUAG|A GCACUCA-AU GG-gcu--ag gguggc--(c -ccauuuc)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gcc uua-cc-aac 3301 cCC--AG-GG AAACUCCG-- AAUA|-CAGG -C-Cuagauc ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -g----uU-U -GUAC-AGAC AGACUuuUG- GG-GU(-GCU 3481 AAG)AUCCAA AG-UC----G AGAGGG(AAA -CAG)CCC-A GAUCG-U-AC -GC-UAA--- 3541 --GGU-CCCU -AAGCAA-U- CACUUAGUG- ---------- GAAAAGGAA- GUGAUCGAGC 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UGACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCCU|U(U- GA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGC-UC-C -AU-GGC|-A CCGAAAAU-- ---------- ---------- ----GUAUCA 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---cAAGUGA UUC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCG| A--C-GA|GA Ccuugaaa-- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 -guu--)--- uuucaaguGU -C-----AGU AGCGG-GA|- CG-UUCUGUC A---AUCGGG 4501 G--------A AGGUU-UUUG (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->CA ACA--CCU-G G|AGAU---| AUCAGAAGUG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-GAA- AUC-CU-GU- (gaaaa---- ---------- ---------- 4741 ---------- -----)-A-C ACGAU-|CGC Cugcca-GUG GAA--GGCUU -|----UCUG 4801 CGUUC---AG ---------- ----(--UCA AU)C-U|-AC GCAGAG---- ---------- 4861 ---UGAAU-- -CGGUCCCUA A-G-G-A--- accCCC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GGGcugc cg---U-CCG AU-GGGUA-- -----cacga ---------- ---------- 5041 ---------- ---------- -----aagu- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- --------ga cgaaguugcu uugacua--c 5461 agaaccaugc cugucuguug gag|cgaauu ggauggucgg gccgacucuc gucgccucuu 5521 |ccccucacu cuccuuuccc uaauaugaac cuugagucau caaagccuuu cugacucggc 5581 cu-- ----ucgucg ----ua-guu uggccuuuug 5701 aaucgacugu ucuagggggg ccuaacgucu uuugaaacga guagggg--- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ------ucgc gagagagcag -gcguaccgc ccugccauag ucgcgagucu guuuauaguc 6361 g----cgacu guugucauag ucaacaa-gg uugaaacuuc uaggaaaaaa cuucgaauug 6421 ggagggcgau ccucccggug aacug->--- ---------- ---------- -ACCGUA|CC 6481 C--CAAACC- -(GACACA)G G|UGAAC-AA GUA-(GAG-U A-----)-UA CUAGGGCGC| 6541 |--UUGAG-A G--AACCAUG -UCGA-AGGA ACUCGGCAAA AUGACC-CCG UAAC(UUCG- 6601 )GGAGAA-GG GGU|GCUCUC cu-------- ---------- ---------- -----agGAA 6781 -AGC|G(GCA )C--AUACCA GGGGGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGUG---- ---------- (--GUAA--- ------)--- ---------- 6901 CACGAUGUA- UAG-AGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-GGU CGGAAG-GA- 7021 --GAAGU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------guua guu)-----G CUUU--GAAU G-GAAGCC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCAGU-(AA CUCUA)ACUG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGCA(-U AAGU-)AGCG AC|CU-GCAC GAAUGGUGUA A-CGACUGCC 7261 CC-------- ---------- -------GCU GUCUCCGACA UGGA-CC-CG ----GUGAAA 7321 UU|G|AAUUC UC-CG(U-GA AGAUG)CGGA GUA----CCA ACGGCUAGAC GGUAAG-ACC 7381 CCGUGC-|-A CCUUA--ACU AU|--A-GCU UCG--CAGU| <--------- ---------- 7441 ---------- ---------- --->GACAA- CC-----UUG -AUCGAAUG- UGU---AGGA 7501 UAGGUGGGA- -GGUggu--- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(gacacac a)-------- --a--cgACC 7681 AAUCCUGAAA GACCACU|c- ----uUUCG- U-C-U-AAGG AUGC-CUAA- -CCG-CCgca 7741 ccga-(---g aau-)-ucgg ---------- ---------- --------gg gggGGCGG<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC ACUGC-G-AG -GUG-GG-UA GUUUAUCUG( 8161 GGG)CG-GA- U|GCCUCC(- --------UA AAGAGUAAC- )GGAG-GU|G |U|GCGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAG 8401 -GC|--UCA- AGCG--<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uugauuc-- )------UGC UC-------- ---------- 8701 ---------- ---------- ---------- ---GUGA|GC (G|UAAUG)G UAU-AAG-CC 8761 U-GC-CUGAC UGUGA-GAC( -cgacug--- )GUCGA-ACA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CGGG AG-U------ ---------- CCC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)GG|GCUC 9001 UCGCUCAAC- |GGAUCAAAG GUACGC|CGG G|GAUAACAG |G-CUG-A-U GACUCCCAAG 9061 AG(C--UCUU )AUCGACGGA --GUCGUUUG GC-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGG GU-UG(--AA -GA)AGGUCC CAAG-GGU|U CGGU(UGUUC )GCCGA-UUC 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUUCCUAU 9241 CU|ACCGU-U GG|U|<---- ---------- ---------- ---------- ------guua 9301 >AAGGG-AGA AC-UGC-GAG GAG-CCA-AC CC--(UAGU- AC(-GAGA)G GACU-)GGGU 9361 U--GG-<--- ---------- ---------- -------->G CCAACCU-AU GGUGUACCGG 9421 U|-UGU-UAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GCAGCG CCGG--GCAG CUAA-GUUGG UAU------- ---------- -------GGA 9601 ---------- -AGAACUGCU (g-------- --cgc)C-GC -GG-GAAAUC CU-UCUCUAU 9661 ACAAG--U-- -UCUCG-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -gacg-A|GG 9961 UUU(UUGAAC A--)GAACUU C--------- ---------- ---------- ------GAUA 10021 G|GCGAGAGG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAGC ACC------- ---------- --------(- ---------- 10141 ---------- -------GCG A)GGUGU--- ---------- ---------- ---------- 10201 ----GAAGCG A|U|CUCGUA CUAaa----- ---------- ---------- -------cg- 10261 aa-------- ---------- ---------- ---------- ---------- ---------- 10321 --------|a cgacuuucac uuu~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (3)-strame 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.litto 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Pilayella littoralis subsp. was Pylaiella littoralis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Pilayella littoralis subsp. was Pylaiella littoralis. ORGANISM Mitochondria Pilayella littoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z48620 ID PLRRNA23 confidential; DNA; PLN; 9860 BP. XX AC Z48620; XX DT 07-MAR-1995 (Rel. 42, Created) DT 09-MAR-1995 (Rel. 43, Last updated, Version 2) XX DE P.littoralis lrn gene for 23S ribosomal RNA. XX KW 23S ribosomal RNA; lrn gene; tRNA-Lys. XX OS Pylaiella littoralis OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae. XX RN [1] RP 1-9860 RA Fontaine J.M., Rousvoal S., Leblanc C., Kloareg B., RA Loiseaux-de Goer S.; RT "The mitochondrial 23S rDNA of the brown alga Pylaiella littoralis RT is strongly alpha proteobacterial and is split by four group IIB RT introns, with an atypical phylogeny"; RL Unpublished. XX RN [2] RP 1-9860 RA Fontaine J.M.; RT ; RL Submitted (07-MAR-1995) to the EMBL/GenBank/DDBJ databases. RL Jean-Marc Fontaine, Station Biologique BP 74 CNRS UPR 9042, Place RL Georges Teissier, 29682 Roscoff cedex, FRANCE XX FH Key Location/Qualifiers FH FT source 1..9860 FT /organism="Pylaiella littoralis" FT /clone="b739" FT exon 1..539 FT /number=1 FT /product="LSU ribosomal RNA" FT /gene="lrn" FT intron 540..2950 FT /number=1 FT exon 2941..4049 FT /number=2 FT /product="LSU ribosomal RNA" FT /gene="lrn" FT intron 4050..6483 FT /number=2 FT exon 6484..7127 FT /number=3 FT /product="LSU ribosomal RNA" FT /gene="lrn" FT intron 7128..8298 FT /number=3 FT exon 8299..8356 FT /number=4 FT /product="LSU ribosomal RNA" FT /gene="lrn" FT intron 8357..9320 FT /number=4 FT exon 9321..9673 FT /number=5 FT /product="LSU ribosomal RNA" FT /gene="lrn" FT tRNA 9687..9752 FT /product="tRNA-Lys" FT /gene="trnK" FT /anticodon=(pos:9723..9725,aa:Lys) FT stem_loop 9763..9854 XX SQ Sequence 9860 BP; 3110 A; 1754 C; 2368 G; 2628 T; 0 other; BASE COUNT 834 a 495 c 678 g 686 t 8082 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~uaaua uaau------ ---------- ---------- 241 ---------- ---------- ---------- -----AAUAA AGUAUGGAA- ----GGGAUG 301 |CCU--UGG| AAG-AAAAUA A|-------- ---------- -----uagg| -cgug(-auu 361 aau------) c|augcaaa- guguugg|-c a-cgaggaaa accugugaga cgccaga--- 421 ---------- ---------- uc-acgg-au ccuaaua-cg g--------- -----(uaaa 481 )ccg|gagcu --(auaa-)- -agcuc---- gcu------- ---------- -(guua--)- 541 ---------- -------agc ag-<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ------uauu |AAGGGGAAG 841 UGA(AACA)U CUCAGUA--- -CCCCU---- ---------- ---------- ----GUAAAC 901 CAAAUC(-AA CC)GA-G--C |GUC-GUUA- -GUAG-U(-G GUGA)GCGAA -AGCGAUAA- 961 AAGGCAa<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- -aacgaaaua aauuguuuua 1201 aauuuuaauu uaaauacaag caaaagagug aagugauaa< ---------- ---------- 1261 ---------- ---------- ---------> (uaaa--)uu aucu------ AC-|C(UGA) 1321 G--AAGG(UG UUAGU)CCUg ua--auaauu uuuuuuuucg u--------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- -gaUAGUAGG GUAAG-(--- ---------- 1561 --gcaag)-U UUACCUcacc cgaguaUUGG G(GACCA-C) -CUCAA---A GCCU--AAGG 1621 ---UUUUUUU C-UUACCGAU AGUG-AA--- -CAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAG--aau -(-ugug--) -auu------ ---------- ---------- gugcaAAGA- 1801 ACCUG-AAAU UCCA-UAU-U U-<------- ---------- ---------- ---------- 1861 ----->---- -gaGUCGAAG Ca------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---guuuaa 2041 --)------U GCAACGGC-A UACCUU(UU- GUAUA)AUGG |GCA-AGUGA AU-----CU- 2101 UAGUAAAGGG CAA--gcuua aucu------ ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -----auuaa -------agu g-aagg-cGA 2521 AGA-(-GAAA )--UCG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->-agu cu(ugaau-) -g-gcgu--- ---uuuaaaG UCCUU-UGCU 2701 AAG-UACCCG AA-ACCGG-C UG-AUCUAAA CUU-GAG-CA GGCUGAUauu G-UA--GU-G 2761 G(-------- ---------- ---------- ---------- -----caac) ACUCUUUGGA 2821 GGGCCGAA-C CC-GUGUAU( GUGGCAA-A) AUAC-UGGGA --UGACUUG- AGUUUAG-GG 2881 GU(G-AAAG) GCC-AAUC-A A-AGUCGGUG AUAGCU-GGA UUUCU--GCG AA-AUC-UAU 2941 (-UGAA)GUA GA-GC-GUUU UAUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------ua gaa|-AGUCU 3061 G|GGGUAG|A GCACUGU-gc aa-gca--ag ggggag--(a uaau----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--cuc uua-cuaaac 3301 uuu--g--GC AAACUCCG-- AAUA|-CAGA -U-U---uuu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uca-uUU-A -GAGC-AGAC AGAGU--AU- GC-GU(-GCA 3481 AAG)AUGCAU AC-UC----G AGAGGG(AAA -CAG)CCC-A GACUG-U-UA -GC-UAA--- 3541 --GGU-CCAU -AAA-AU-A- GUUUCAGUG- ---------- GUAAAGGug- acauuuGCUC 3601 C-g------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- aGACc-GUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAGGU-A GGC(UUGGAA 3781 GC-A)-GCCA -UUCU|U(U- UA)A|GACAG C(--GUAACA )GC|-UCAC- UGACCU<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGA-GU-a -au-agu|-- CCgccaa--- ---------- ---------- ----uuauAG 3961 GGCUU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAACU AUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCU| c--CgAG|AC Aaa------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 ua----)--- -----uu-UG -U-----GGU AGCAG-AA|- CC-UUCCGUA ----GUCaua 4501 a--------A AGUUU-UAUU (GUAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AG UAA--AAU-G A|AGAU---| AUCGGAGGUG AGAAUAC-UU 4681 GC|AUGAGUA -GCA--UAA- AAC-AA-UG- (aaauuaaag ---------- ---------- 4741 ---------- -----)-C-A UUGUg-|GGC C-GUAA-GUC CAA--GGUUU -|----cgau 4801 c-cua---ag ---------- ----(--uaa ag)c-u|--a ggucgugaga gguaaaaacc 4861 ucaaauuaaa aCGGUCCCUA A-G-C-U--- gucccg-(-g aag------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--gcc---u cc---A-GUA AU-GGGCAa- gauu(----- ---------- ---------- 5041 ---------- ---acgaau- ----)aaucu |-guua|aga g--uugcu-- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- --------ga cgaaaaauuc acuuuau--u 5461 cuugagacug ucaaggguga uuu|auuu-- ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- uuuc------ ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>caa gaaaaaggca cucuau-aug aACCGUA|CC 6481 U--UAAA-C- -(ACCACA)G G|UGGAC-AG GUG-(GAG-U A-----)-CA CUAAGGCC-| 6541 |--UUGAG-A U--AACCCUG -UUGA-AGGA ACUCGGCAAA AUGACU-CUG UAAC(UUCG- 6601 )GAAUAA-GG GGU|AAAguu auuagc---- -----(guaa ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- -gcuuuuauc 6781 -UUU|G(ACA )C--AAAAUC GGGGGUGG|C GA---CUG-U UU(AUUAA)A AA+CACA-GG 6841 UCUCUG|CU- -AACUC---- ---------- (--GCAA--- ------)--- ---------- 6901 GAGGAUGUA- UAG-GGACUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CCGGCA-GGU AAAGCU-UG- 7021 --AAUGU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uac)-----G CGUU--UAAG U-CAAACC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCUGU-(AA CUAUG)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGGG(-U AAGU-)UCCG AC|CC-GCAU GAAUGGUGUA A-CGACUUCC 7261 CC-------- ---------- -------GCU GUCUCCAACA GGGA-CU-CA ----GUGAAA 7321 UU|A|CAUAG GU-CG(U-GA AGAUG)CGAC CAU----CCU GCAGCUGGAC GGAAAG-ACC 7381 CCGUGC-|-A CCUUU--ACU AU|--A-AGC AAG--UAUU| <--------- ---------- 7441 ---------- ---------- --->GUAAA- UC-----AAa -gacuuaag- UGU---AGAA 7501 UAGGUGGGA- -GCCggc-ga c-uuauucuc --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gcu a)-gagau-u aau--gaGGC 7681 AGUAGUGAAA UACCACC|c- ----aaaga- u-c-ugUUGA UUUA-Cuaa- -c-------- 7741 -aac-aacaa caacu-aaa- ---------- ---------- ---------- -------g<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC AGUGC-U-UG -CUG-GG-UA GUUUGACUG( 8161 GGG)CG-GU- C|GC-UCC(- --------UA AAGAGUAAC- )GGAG-GC|A |U|ACAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAG 8401 -GC|--UCA- UCC---<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (cccuauaa- )-------GG AG-------- ---------- 8701 ---------- ---------- ---------- ---UCGA|GU (G|UAAUG)G CAU-AAG-CC 8761 U-GC-UUGAC UGUAA-GAA( -auacau--- )UUCAA-UCA G--------- ---------- 8821 ---------- --------GG AC-------- ---(GUAA-- -)-------- ----GUC-GG 8881 U|---CAUAG UGAUC-CGGU GG-U------ ---------- UCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UCGUGG AA)AG|GCCA 9001 UCGCGCAAU- |GGAUAAAAG GUACGC|CGG G|GAUAACAG |G-CUA-A-U GAUCCUCUAG 9061 AG(U--CCCU )AUCGACGGG --UUCGUUUG GC-ACCUCGA UGUC|GA-gC U|C|AUCAC| 9121 AU-CC-UGGA GC-UG(--GA -AA)AGGUUC CAAG-GGU|U CGGC(UGUUC )GCCGA-CGA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU-C(GU GA)GACAGUU UGGUCCCUAU 9241 CU|UCUGU-G GG|U|<---- ---------- ---------- ---------- ---------- 9301 >guuUG-AAA AU-UAA-GAG GAC-UAA-AC CU--(UAGU- AC(-GAGA)G GACC-)GGGA 9361 A--A--<--- ---------- ---------- -------->C UUGAUCC-CU UGUGUUCCGG 9421 U|-UGU-UC- (ccaca)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 -gg-gcaacg -cgg--guag cuaC-AUCAA Gaa------- ---------- -------GAG 9601 ---------- -auaaucgac (--------c auuuc)g-gc -ga-GAAACU C-uCCUCAAG 9661 UAAAA--U-- -UUUCG-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -ugagua|GG 9961 UGG(AAGAUU A--)CCACUu g--------- ---------- ---------- ------GAUA 10021 G|GCGGGAAG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguaaGA GCU------- ---------- --------(- ---------- 10141 ---------- -------GUA A)AGUUU--- ---------- ---------- ---------- 10201 ----ucagCU G|A|UCCGUA CUAau----- ---------- ---------- -----aucuc 10261 ---------- ---------- ---------- ---------- ---------- ---------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (2)-Unclas 10775 bp RNA RNA 09-JAN-1999 DEFINITION Unclassified Eukaryotes. ACCESSION No information KEYWORDS No information. SOURCE Unclassified Eukaryotes. ORGANISM Unclassified Eukaryotes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.Rec.ame 10775 bp RNA RNA 11-JAN-1997 DEFINITION Mitochondria Reclinomonas americana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Reclinomonas americana. ORGANISM Mitochondria Reclinomonas americana. REFERENCE 1 (bases 1 to 17443) AUTHORS Burger,Lang,Gray JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF007261 Reclinomonas americana mt rnl, final version 29NOV96, 2751 Residues BASE COUNT 886 a 466 c 700 g 699 t 8024 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~uaa-a gaca------ --a------- ---------- ---------- 241 ---------- ---------- ---------- -----AAGAA GGUAUUCAA- ----UGGAUG 301 |CCU--UGG| UAU-UCGG-U U|-------- ---------- ----AUGGA| -CGUA(-AUA 361 CGU------) U|GCGAUAA- GUCAUGG|gg a-gaa--(-- ---------- ---------- 421 acguaga)-a aaacugugau CCAUGAA-UU GCCAAA--GA G--------- -----(AAAA 481 )CUC|acuc- --(guaau)- --gagu---- agagucau-- ---------- -(uuauau)- 541 ---------- --augauucu a--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----uAUAC |UUGGUGAAC 841 UGA(AACA)U CUAAGUA--- -GCCAA---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AA)GA-G-AU |UCC-GUUA- -GUAG-U(-G GCGA)GCGAA -UACGGAUU- 961 -AGGCC------- 1201 --------cu auuuaaugau aauaauauua gaaAAGAUU< ---------- ---------- 1261 ---------- ---------- ---------> (GGAA--)AA UCUU------ GC-|C(AUA) 1321 G--AAGG(UG AUAGC)CCUg ua--uaauaa aga--auaaa uugaauag-- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >agGAGUAAG ACGGAA(--- --------CA 1561 CGUGAAA)UU UUGUCUGAAU ----auAGCA G(GACCA-C) -CUGCUA--A GCCUA-AAUA 1621 ---UAACCGA A-UAACCGAU AGUG-AA--- -CAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC U(GAGA---) AGGG------ ---------- ------AGUG AA--A-AGA- 1801 ACCUG-AAAU UGAA-UAC-U U-<------- ---------- ---------- ---------- 1861 ----->ACAA GCAGUCGAAG UGAACuuu<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (acuuuaugu 2041 --)uaaGUUU AUGACGGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCGA GU-----UC- 2101 AUAUACGCAG CAA--gcuua a-ucc--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gau a)----ggaa --uagg-cGU 2521 AGU-(-GAAA )--ACG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->aguu u-(gaaaa-) -auagcg--- -----UUAAG UUGCG-UGUG 2701 UGA-GACCCG AA-ACUGA-G UG-AUCUAUC CAU-GAG-CA GGUUGAA--- A-GU--GC-G 2761 G(-------- ---------- ---------- ---------- -----ugau) ACGCACUGGA 2821 GGACCGAA-C CCAC-GUAU( GUGGAAA-A) AUAC-GGGGA --UGACUUG- UGGAUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUCAGAG AUAGCU-GGU UUUCU--GCG AA-AUC-UAU 2941 (-UUAG)GUA GA-GC-GUUG UGUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->AA CAU|-CAUUU 3061 G|GGGUAG|A GCACUCA-AU GA-GUAcuug gggggu--(g ucaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--acu acu-uc-AGG 3301 CUC--AA-GG AAACUCCG-- AAUA|-CGAA -U-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -AAU--A--A -CAGC-AGAC AGACU--AU- GG-GC(-GAU 3481 AAG)GUCCGU GG-UC----G AGAGGG(AAA -CAG)CCC-A GAUCG-U-AA -GC-UAA--- 3541 --GGU-CCCA -AAGUGA-U- UACUAAGUG- ---------- GUAAAGGAU- GUUAAAAGGC 3601 C-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGACA-ACCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCCU|U(U- AA)A|GAAAG C(--GUAACA )GC|-UCAC- UGGUCUAGC-CU-U -UU-UGC|-G CCGAAAAU-- ---------- ---------- ----GUAACG 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAGUAA UCC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCU| G--C-GG|aa gauau----- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaa---)--- ---auau-cu -u-----GGU AGCAG-AA|- CG-UUCUGUA A---GUCGUU 4501 G--------A AGAUA-AAAU (GUCA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GU UUU--AUU-G G|AGAU---| AUCAGAAGUG AGAAUGC-UG 4681 AC|AUGAGUA -GCGA-CAA- ACA-AU-GU- (ggaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUGU-|CAC C-GUAA-GUU CAA--GGGUU -|----UCUG 4801 CGCAA---GG ---------- ----(--UUC GU)C-C|-AC GCAGAG---- ---------- 4861 ---UGAAU-- -CGGCCCCUA A-U-A-A--- AAAAAC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GUU---G UA---U-UAG AU-GGGA--- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |---AU|uu- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->gU CAUUGAU-GA CGGAUUGUGU Uuuguaggca 5461 uauau(uuau uggauu)aua ugu|gcuuau --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- -------AGC 5581 A-<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->UG GUUCCAGGAA ----AG-AAC AUU<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- -gac---uaa uuaaaa---- -ACCGUA|CC 6481 C--GAAACC- -(GACACA)G G|UGAAC-GA GUA-(GAG-U A-----)-UA CUAAGGUGA| 6541 |--GUGAG-A G--AACAAUC -UUGA-AGGA ACUCGGCAAA AUAACU-CCG UAAU(UUAG- 6601 )GAAGAA-GG AGU|ACUUAU ---aua---- -guua(--uu aau)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->uggu-- --uau--AUA 6781 -AGU|G(GCA )C--UUAAUA GGGGGGAG|C GA---CUG-U UU(AAUAA)A AA-CACA-AG 6841 ACUCUG|CU- -AAACC---- ---------- (--GUAA--- ------)--- ---------- 6901 GGUGAUGUA- UAG-GGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGGAA-GGU UAAcgu-ga- 7021 --uuugu--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------gu aua)-----g caaa--gauc u-UAAGCC-| 7141 CC-AGUA-AA C-|GG-C|-A -GCCGU-(AA CCAUA)ACGG UU|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |UUCGGG(-U AAGU-)UCCG AA|GU-GCAU GAAUGGUGUA A-CGACUUCC 7261 CU-------- ---------- -------ACU GUCUCCAAGA UUGA-CU-CA ----GCGAAA 7321 UU|G|AACUC UC-CG(U-GA AGAUG)CGGA GUU----CCA ACGGUUAGAC GGAAAG-ACC 7381 CCGUGC-|-A CCUUU--ACU AC|--A-UCU UUA--CAAU| <--------- ---------- 7441 ---------- ---------- --->GCUAA- GA-----AAG -AUAUAAUG- UGU---AGAA 7501 UAGGUGGGA- -GCUUAU-GA U-ACCUCGAC --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----GCU A)-GUCGAUU GUG--GAGGC 7681 AUCUGUGAAA UACCACU|C- ----UUUAU- C-U-C-UUUU AUAG-CUAA- -cuaaua--- 7741 uuuu-(--ua uauu)-aaaa ---------- ---------- ---------- ---uauag<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC AUUGU-A-UG -GUU-GG-UA GUUUGACUG( 8161 GGG)CG-GU- C|GCCUCC(- --------UA AAGAGUAAC- )GGAG-GC|G |C|GCAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UGG 8401 -GC|--UCA- GGUUGG<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uuggaaa-- )----CCAAC UG-------- ---------- 8701 ---------- ---------- ---------- ---UAGA|GU (G|UAAUG)G CAU-AAG-CC 8761 C-GC-UUGAC UGUGA-CAC( -cuacaa--- )GUGAA-ACA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GUAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CGGU GG-U------ ---------- GCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)AG|GCCA 9001 UCGCUCAAC- |GGAUAAAAG GUACGC|CGG G|GAUAACAG |G-CUA-A-U GACUCCCAAG 9061 AG(C--UCUU )AUCGACGGA --GUCGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGGA GC-UG(--CA -GA)AGGUUC CAAG-GGU|U UGGC(UGUUC )GCCAA-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUCCCUAU 9241 CU|GCCGU-U GG|U|<---- ---------- ---------- ---------- ---------- 9301 >GUUGG-AGA AU-UGA-GAG GUU-CCG-AC CC--(UAGU- AC(-GAGA)G GAUC-)GGGU 9361 A--GG-<--- ---------- ---------- -------->A UAUACCU-AU GGUGUAUCGA 9421 U|-UGU-UAA (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GCAUCG UCGA--GUAG CUAA-GUAUA GAC------- ---------- -------AGA 9601 ---------- -AUAACCGCU (GAAAGC--A U-AUA)A-GC -GG-GAAUUC UA-CCUCAAA 9661 ACAAG--U-- -UCUCC-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )-------uu ugagagc|CG 9961 UGA(AAGACU A--)UCACGU U--------- ---------- ---------- ------GAUA 10021 G|GUCAAAUG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAAC AUG------- ---------- --------(- ---------- 10141 ---------- -------GUA A)CAUGC--- ---------- ---------- ---------- 10201 ------agcu a|a|uugaua cuaau-a--- ---------- ---------- -----ucucg 10261 a--------- ---------- ---------- ---------- ---a------ ---ugucuuu 10321 aau-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| //