CRW: A Story - Manuscript Table 2

Last modified on 14 July 2000.

Position ^b	Percent AA ^c	Percent AAG ^c	Percent G:U ^c	Predicted Structure Motifs ^d
Multi-Stem Loops
23S rRNA
14	99	99	98	P

Internal Loops
16S rRNA
415	76	75	59	EL, P
432	100	55	45	GA, P
1289	100	55	55	A, P

23S rRNA
706	100	94	94	A, P
1214	97	97	97	A, P
1470	86	81	76	GA, P
1854	100	54	39	GA, P
1877	98	98	98	P
1890	100	100	100	P
2135 ^e	86	48	46	P

Bulge Loops
23S rRNA
2542	100	100	99	P
2851	93	91	91	P

^a rRNA positions have an AAG:U motif in more than 33% of the bacterial sequences and are indicated in red on Figure 5. ^bThe position number is the nucleotide at the 3’ loop end, at the loop-helix junction. ^c More detailed information is available at http://www.rna.icmb.utexas.edu/ANALYSIS/A-STORY/. ^d A, AA.AG@helix.ends, EL, E-like Loop; GA, Tandem G:A pairings; P, adenosine platform (see Discussion). ^e Although this site contains less than 50% AAG, it was included because it contains more than 33% G:U and narrowly missed the required minimum for AAG.

CRW: A Story - Manuscript Table 2

Table 2. A motif: AAG:U sites in 16 S and 23 S rRNA a.

Table 2. A motif: AAG:U sites in 16 S and 23 S rRNA ^a.