LOCUS MVRNAR18S DEFINITION M.varians 18S rRNA gene. ACCESSION X85402 NID g1419086 VERSION X85402.1 GI:1419086 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Melosira varians. ORGANISM Melosira varians Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Melosirales; Melosiraceae; Melosira. REFERENCE 2 (bases 1 to 1779) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1779 /organism="Melosira varians" /db_xref="taxon:49256" rRNA 1..1779 /product="18S ribosomal RNA" BASE COUNT 513 a 313 c 429 g 524 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGCGAU ACGCUCGUAU UAAA-GAUUA 61 AGCCAUGC-A -UGU-GUCAG UAUaaAAC-u uuuG-----U UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAAC AGUUAUAGUU -UAUUU-GAC GU-UCUU--- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUA- AAAAUCUGAC -----UUCG- -----GA-AG 241 AUUGUAUUUA UUAGGuAUCA A-accauc-- cuc--GUUU- --gagUAUa- -UGGUGAUUC 301 AUGA-UAU-U GGA--AUGGA -UCAUA-CAG CUUUAa-G-C UGUU-GACAA GUCAUAUAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UUGC CUACCAUGGC ACUCACGGGU 421 AACGGGAGAU UAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUA-AUACA GGGAGGUAGU AAC-GAUGAA 541 UAACAAUGUC -GGGCCU-UU UCAGG-UCUG ACAAUUGGAA UG-AG-AACG AU-GUAAA-C 601 AUCCUA-UCA AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-Ua CaGUUA-AAA AGCUCGUAGU U-GAAUUUUa 721 ggu-u-gu-a ugg=cuuauu -ccc-ac--- -A----UU-- ---guga-ga ------aag- 781 ag--u-c-g- -uu-ua=gcc uUUAaugau- uaaugau-aa aau-a-gca- UUAAUUuguu 841 guu-uug--u uag-gaau-c auC-UUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-AU--Ug cuG-ugAAUA -CAUUAGCAU GGAAUAAUGA AAUAGGACUC AG-GUUCUAU 961 UUU-GUUGGU CUAA-gaccC aUGAgUAA-U GAUU-AACAG GAACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAG UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCACUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGGGAUC AUCAGu-ugu 1201 u--aUUUAug a-cacug--g UGGCACCUUA UGAGAGAUCA --AAGUC-UU UGGGUU-CuG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAAAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGG-A-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUacAC-ua aug--UUU-- uauuUGU-gu 1561 -u--aacuUC UUAGAGGGAC UUUCAGU--g acuaACUGAA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 UAAGUCU--- -UUCC-UUGG CCGAGA-GGC UUAGGGUAAA CUUU-UAAUA UGUuUCGUGA 1741 UAGGGAUUGA AUCUUGUAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA CCGCA-GAUC 1801 -AUUAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGAUC CGGUGAGGAC UGGAGAuuaA -ggcA=AUcu uuc-UUCACU ggaa=g=UGC 1921 gcc-Augaga aCUUGUCCAA AUCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS MVA243065 DEFINITION Melosira varians partial 18S rRNA gene, isolate MV13. ACCESSION AJ243065 VERSION AJ243065.1 GI:5101856 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Melosira varians. ORGANISM Melosira varians Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Melosirales; Melosiraceae; Melosira. REFERENCE 2 (bases 1 to 1745) AUTHORS Beszteri,B. TITLE Direct Submission JOURNAL Submitted (10-JUN-1999) Beszteri B., Dept. of Microbiology, Eotvos Lorand University, Budapest, Muzeum Krt. 4/A, H-1088, HUNGARY MEDLINE NONE FEATURES Location/Qualifiers source 1..1745 /organism="Melosira varians" /isolate="MV13" /db_xref="taxon:49256" /country="Hungary" rRNA 1..1745 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1745 /gene="18S rRNA" BASE COUNT 503 a 302 c 422 g 518 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~CGCUCGUAU UAAA-GAUUA 61 AGCCAUGC-A -UGU-GUCAG UAUAAAAC-U UUUg-----U UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAAC AGUUAUAGUU -UAUUU-GAC GU-UCUU--- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUA- AAAAUCUAAC -----UUCG- -----GA-AG 241 AUUGUAUUUA UUAGgUauca a-accauc-- cuc--auuu- --gaguaua- -UGGUGAUUC 301 AUGA-UAu-U GGA--AUGGA -UCAUA-CAG Cuuuaa-G-C UGUU-GACAA GUCAUAUAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UUGC CUACCAUGGC AUUCACGGGU 421 AACGGGAGAU UAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUA-auaCA GGGAGGUAGU AAC-GAUGAA 541 UAACAAUGUC -GGGCCU-uu ucAGG-UCUG ACAAUUGGAA UG-AG-AACG AU-GUAAA-C 601 AUCCUA-UCA AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaauuuua 721 ggu-u-gu-g ugg=cuuauu -cuc=ac--- -a----uu-- ---guga-ga ------aag- 781 ag--u-c-g- -uu-ua=gcc uuuaaugau- uaaugau-aa aau-a-gca- uuaauuuguu 841 guu-uug--u uag-gaau-c auc-UUUUAC UGUGAAGAAA UUAGAGUGG- UC-AAAG-CA 901 GGC-AU--ug cug-ugaaUA -CAUUAGCAU GGAAUAAUGA AAUAGGACUC AG-GuucUAU 961 UUU-GUUGGU UUaa-gaccc augaGUAA-U GAUU-AACAG GAACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAG UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCACUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGGGAUc aucagu-ugu 1201 u--auuuaug a-cacug--g uggcaccuuA UGAGAAAUCA --AAGUC-UU UGGGUU-CUG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uuacac-ua aug--uuu-- uauuugu-gu 1561 -u--AACUUC UUAGAGGGAC UUUCAGU--g acuaACUGAA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 UAAGUCU--- -UUCC-UUGG CCGAGA-GGC UU-AGGUAAA CUUU-Uaaua uguuUCGUGA 1741 UAGGGAUUGA AUCUUGUAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA CCGCA-GAUC 1801 -AUUAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGAUC CGGUGAGGAC UGGAGAuuaa -ggca=aucu uuc-uucacu ggaa=g=ugc 1921 gcc-augaga aCUUGUCCAA AUCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SYXRRNAA DEFINITION Stephanopyxis cf. broschii 16S-like ribosomal RNA, complete. ACCESSION M87330 VERSION NONE KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Stephanopyxis broschii (sub_species Grun) rRNA. ORGANISM Stephanopyxis broschii Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1805) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry MEDLINE NONE FEATURES Location/Qualifiers rRNA 22..1778 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 480 a 351 c 474 g 500 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUCGCAU UUAA-GAUUA 61 AGCCAUGC-A -UGU-GUCAG UUuaaaaa-u uuau-----u ugag-AC-U- GUGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AGUUCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAGGCCCGAC -----UUCG- -----GAAGG 241 GUUGUAUUUA UUAGAUuaca aaACCAUC-- Ccucuuuu-- agaggcuagu gUGGUGAAUC 301 AUGA-UAA-G UUU--GCGGA -UCGCA-UGG Cuccau-G-C CGGC-GACAG AUCAUAUAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC AUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGC-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-GAUUAA 541 UAACAAUGCC -GGGCCU-uu ucAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GUAAA-C 601 ACCCUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaauuucu 721 ggc-g-gg-a gca=accggu -ccu=ucac- -u----ug-- gu-guug-gu ac----uugu 781 gu--u-guc- -uc-ug=gcc auccuuggg- gagagcc-ug ugu-g-gca- uuaaguuguc 841 ggg-cgg--g gga-uccc-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCGCUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcAUC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UGGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUCAACCAUA AACUAUGCCA ACUAGGGAUU AGCGGU-cgu 1201 u-uauuagug a-cuccg--u uagcaccuuA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU -GAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCcugu-ga auga-auuuu cauugac-aa 1561 -g--guCUUC UUAGAGGGAC UUUCGGU--g acuaACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCGGCACGCG CGCUACACUG AUGCAUUCAA 1681 CAAGcau--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUUGAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGUUC CGGUGAGGAC UCGGGAuuga -uguu=agcu ucc-uuuguu ggga=c=uug 1921 aua-augcga aCUCGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAGC~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY121821 DEFINITION Aulacoseira baicalensis 18S ribosomal RNA gene, partial sequence. ACCESSION AY121821 VERSION AY121821.1 GI:22651790 KEYWORDS . SOURCE Aulacoseira baicalensis ORGANISM Aulacoseira baicalensis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1802) AUTHORS Sherbakova,T.A. and Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (13-JUN-2002) Limnological Institute of the Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya, 3, Irkutsk 664033, Russia MEDLINE NONE FEATURES Location/Qualifiers source 1..1802 /organism="Aulacoseira baicalensis" /db_xref="taxon:202469" rRNA <1..>1802 /product="18S ribosomal RNA" BASE COUNT 463 a 351 c 482 g 501 t 5 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGCCA -UGU-GUAAG UAUAAGAa-c uu-------u cgag-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUUACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUCguauuua uuaggUuaca aaaccaac-- Ccucuuucg- ggagguucuc ugggugaguc 301 auga-uaa-g cau--gcGCA -UCGca-cgg cuuua--u-g gcgc-aucGG AUCAGGUAAG 361 UU-CCUG-CC CUAUCAGCUU CGGAUGGUAG GGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-U 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCu 721 ggu-g-ga-g ucg=gucugu -ccu=ucac- -u----ug-- gu-guug-gu uc----gug- 781 ac--u-gua- ucu-cu=gcc cuccuuggu- uggagcc-ag uguug-gca- uucaguuguu 841 ggg-cug--g gga-caau-c aUC-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-uugaaua -cAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-gCGCC A-AAaUAA-U GAUU-AACAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAC 1081 GAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU UGCGGU-Ugu 1201 u--cuuguag a-cuccgugu aagcaccuUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUU-GCC AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -uccggu-ga auga-guuuu cauugac-cu 1561 -g--gucuUC UUAGAGGGAC UUUCggu--g rcuaaccgaa -ggaaguugg gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UNCR CCGUGA-GGC CU-GGGUAAU CUUAUGAACG UGCAUCGUGC 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CWUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACC-A 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-uucagu ggga=u=gug 1921 gcu-guaaga acuUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCURCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY121820 DEFINITION Aulacoseira islandica 18S ribosomal RNA gene, partial sequence. ACCESSION AY121820 VERSION AY121820.1 GI:22651789 KEYWORDS . SOURCE Aulacoseira islandica ORGANISM Aulacoseira islandica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1790) AUTHORS Sherbakova,T.A. and Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (13-JUN-2002) Limnological Institute of the Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya, 3, Irkutsk 664033, Russia MEDLINE NONE FEATURES Location/Qualifiers source 1..1790 /organism="Aulacoseira islandica" /db_xref="taxon:202470" /note="authority: Aulacoseira islandica (O. Muller) Simonsen" rRNA <1..>1790 /product="18S ribosomal RNA" BASE COUNT 463 a 355 c 476 g 494 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AUCCUCG GUGAUCCUCC AGUCAGUGAU =C=CUGCAUU AACG-GACUA 61 A-ccau-c-a -----uugaa uauaa----c uuc------- -gag-accuC CUGAAUGCGC 121 UCAUUAUACU AGU-A-AGUU -UAUUU-GAU AG-ucccu-- --uA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUSCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUCguauuua uuaggUuaca aaaccaac-- Ccucuuucg- ggagguucuc ugggugaguc 301 auga-uaa-g cau--gcGGA -UCGca-cgg cuuuau-g-c uggc-gacGG AUCAUGUAAG 361 UU-CCUG-CC CCAUCAGCUU CGGAUGGUAG AGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-U 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCu 721 ggu-g-ga-g ucg=gucugu -ccu=ucac- -u----ug-- gu-guug-gu uc----gug- 781 ac--u-gua- ucu-cu=gcc cuccuuggu- uggagcc-ag uguug-gca- uucaguuguu 841 ggg-cug--g gga-caau-c aUC-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-uugaaua -cAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-gCGCC A-AAaUAA-U GAUU-AACAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU UGCGGU-Ugu 1201 u--cuuguag a-cuccg--u aagcaccuUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCS-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -uccggu-ga auga-guuuu cauugac-cu 1561 -g--gucuUC UUAGAGGGAC UUUCggu--g acuaaccgaa -ggaaguugg gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UCGG CCGUGA-GGC CU-GGGUAAU CUUAUGAACG UGCAUCGUGC 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-uucagu ggga=u=gug 1921 gcu-guaaga acuUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AARNAR18S DEFINITION A.ambigua 18S rRNA gene. ACCESSION X85404 NID g1418294 VERSION X85404.1 GI:1418294 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Aulacoseira ambigua. ORGANISM Aulacoseira ambigua Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1847) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1847 /organism="Aulacoseira ambigua" /db_xref="taxon:49234" rRNA 1..1847 /product="18S ribosomal RNA" BASE COUNT 483 a 358 c 498 g 505 t 3 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU U-AA-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAuAAGAa-g uac------U CGAG-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUUGUAUUUA UUAGGUuACA AaACCAAC-- CcucuCUCG- ggaggUUCUu uGGGUGAGUC 301 AUGA-UAA-G CAU--GCGGA -UCGCA-GGG CUUUAC-G-C CGGC-GACGG AUCAUGUAAg 361 uU-Ccug-CC CUAUCAGCUU CGGAUGGUAG GGUAU-UGGC CUACCAUGGC AUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-S 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCU 721 ggu-g-ga-g Ucg=gucugu -ccU=Ucac- -U----UG-- gu-guug-gu ac----gug- 781 ac--u-gUA- Ucu-cu=gcc CUCcuuggu- uggaucc-aG ugcug-gca- UUUGGUuguc 841 ggu-cug--g gga-cggc-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-UUGAAUA -CAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUC-GUUGGU UUGC-gCgCC G-AAACAA-U GAUU-AAUAG GGACAGUU-U GGGGAUAUU- 1021 CSUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACCAUGCCG ACUAGGGAUU UGCGGU-ugu 1201 u--CUUGUAg a-cUccg--u aagCaccuUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGRGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUag -UCcggu-Ga auga-GUUUu cauuGac-cU 1561 -g--gUcuUC UUAGAGGGAC UUUCGGU--G ACUAACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUGAACG UGCAUCGUGA 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAUUgc -gg-u=ccgu ucc-UUUACU ggga=u=gUg 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ANY535187 DEFINITION Aulacoseira nyannensis 18S rRNA gene, clone p789. ACCESSION AJ535187 VERSION AJ535187.1 GI:41392040 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Aulacoseira nyassensis ORGANISM Aulacoseira nyassensis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1814) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1814 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 467 a 357 c 497 g 491 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAuAAGAa-g uac------U CGAG-AC-U- GUGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUYGUAUUUA UUAGGUuACA AagccaaC-- Ccucucucg- ggaggUAGUu uggguGaguc 301 Auga-uaa-G CAU--GCGGA -UCGCA-GGG CUUUAC-G-C CGGC-GACGG AUCAUGUAAg 361 cU-Ccug-CC CUAUCAGCUU CGGAUGGUAG GGUAU-UGGC CUACCAUGGC AUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GRGCCU-UU GUAGGCUCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-C 601 ACCCUA-UCG AGGCAUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 ACUCCAAUAG CGUAUAUUAA AGU-UGC-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCU 721 ggu-g-ga-g Ucg=gucugu -ccU=Ucac- -U----UG-- gu-guug-gu ac----gug- 781 ac--u-gUA- Ucu-cu=gcc CUCcuuggu- uggaucu-aG ugcug-gca- UUUGGUuguc 841 ggu-cug--g gga-cggc-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-UUGAAUA -GAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUC-GUUGGU UUGC-GCgCC G-AAACAA-U GACU-AAUAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACCAUGCCG ACUAGGGAUU UGCGGU-ugu 1201 u--CUUGUAg a-cuccg--u AAGCACCUUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GG-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCcGGU-ga auga-GUUUu cauuGac-cU 1561 -g--gUcuUC UUAGAGGGAC UUUCGGU--g acuaACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUGU--A GAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUGAACG UGCAUCGUGA 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -gg-u=ccgu ucc-UUUACU ggga=u=gUg 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAgcu uugaucc~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY121819 DEFINITION Aulacoseira nyassensis 18S ribosomal RNA gene, partial sequence. ACCESSION AY121819 VERSION AY121819.1 GI:22651788 KEYWORDS . SOURCE Aulacoseira nyassensis ORGANISM Aulacoseira nyassensis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1801) AUTHORS Sherbakova,T.A. and Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (13-JUN-2002) Limnological Institute of the Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya, 3, Irkutsk 664033, Russia MEDLINE NONE FEATURES Location/Qualifiers source 1..1801 /organism="Aulacoseira nyassensis" /db_xref="taxon:202473" /note="authority: Aulacoseira nyassensis (O. Muller) Simonsen" rRNA <1..>1801 /product="18S ribosomal RNA" BASE COUNT 469 a 343 c 499 g 490 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUUGUGU GAGUAGUGAU AUGGUGUGAU UAAA-GAGUA 61 AGGGAUGC-A -UGU-GUAAG UAUAAGAa-g uac------u cgag-AC-U- GUGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAgAUCCGAC -----UUCG- -----GGAGG 241 AUuguauuua uuaggUuaca aagccaac-- Ccucucucg- ggagguaguu ugggugaguc 301 auga-uaa-g cau--gcGGA -UCGCa-ggg cuuuacgg-c cggc-gacgg aucauguaag 361 cu-ccug-CC CUAUCAGCUU CGGAUGGUAG GGUAU-UGGC CUACCAUGGC AUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGCAGGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCA -GGGACU-UU GUAGGCUCUG GCAAUUGGAA UGCAGCAACG AU-GCAAA-C 601 ACCCUACUCG AGGCAUC-AA UUUGAGGGCA AGUCUAGUGC CAGCAGCCGC GGUAAUUCCA 661 ACUCCAAUAG CGUAUAUUAA AGU-UGC-UG CAGUUAGAAA AGCUCGUAGU U-GGAUUUCu 721 ggu-g-ga-g ucg=gucugu -ccu=ucac- -u----ug-- gu-guug-gu ac----gug- 781 ac--u-gua- ucu-cu=gcc cuccuuggu- uggaucu-ag ugcug-gca- uuugguuguc 841 ggu-cug--g gga-cggc-c aUC-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-uugaaua -gAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUC-GUUGGU UUGC-gcgcc g-aaacaa-U GACU-AAUAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACCAUGCCG ACUAGGGAUU UGCGGU-Ugu 1201 u--cuuguag a-cuccg--u aagcaccuUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGC-G-UCU- A-GG-U-GU- GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -uccggu-ga auga-guuuu cauugac-cu 1561 -g--gucuUC UUAGAGGGAC UUUCggu--g acuaaccgaa --gaaguugg gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUGU--A GAACC-UUGG CCGAGA-GGC -U-GGGUAAU CUUGUgaacG UGCAUCGUGA 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -gg-u=ccgu ucc-uuuacu ggga=u=gug 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ADRNAR18S DEFINITION A.distans 18S rRNA gene. ACCESSION X85403 NID g1418298 VERSION X85403.1 GI:1418298 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Aulacoseira distans. ORGANISM Aulacoseira distans Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1802 /organism="Aulacoseira distans" /db_xref="taxon:49235" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 471 a 347 c 488 g 494 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAuAAGAa-a uac------U CGAG-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUUGUAUUUA UUAGGUuACA AaaccaaC-- Ccuccuucg- ggaggUAGUu uggguGaguc 301 Auga-uaa-G CAU--GCGGA -UCGCA-GGG CUUCAC-G-C CAGC-GACGG AUCAUGUAAg 361 uU-Ccug-CC CUAUCAGCUU CGGAUGGUAG GGUAU-UGGC CUACCAUGGC AUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU GUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GUAAA-C 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCU 721 ggu-g-ga-g Uua=gucugu -ccU=Ucac- -U----UG-- gu-guug-gu ac----gug- 781 ac--u-gUA- Ucu-cu=gcc CUCcuuggu- uggaucu-aA ugcug-gca- UUUAGUuguc 841 ggu-gua--g gga-cggc-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-UUGAAUA -CAUUAGCAU GGAAUAAUGA GAUAGGGUUU UG-GCACUAU 961 UUC-GUUGGU UUGC-GCgCC G-AAACAA-U GAUU-AAUAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACCAUGCCG ACUAGGGAUU UGCGGU-ugu 1201 u--CUUGUAg a-caccg--u AAGCACCUUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGARA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCYU GCU-AAAUAG -UCcGGU-ga auga-UUCUu cauuGac-cU 1561 -g--gUcuUC UUAGAGGGAC UUUUGGU--g acuaACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A GAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUGAACG UGCAUCGUGA 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUUG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -gg-u=ccgu ucc-UUGAUU ggga=u=gUg 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ABA535186 DEFINITION Aulacoseira baicalensis 18S rRNA gene, isolate 2. ACCESSION AJ535186 VERSION AJ535186.1 GI:41392039 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Aulacoseira baicalensis ORGANISM Aulacoseira baicalensis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1801) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1801 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 467 a 350 c 486 g 498 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAuAAGAa-c uu-------U CGAG-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUCGUAUUUA UUAGGUuACA AaaccaaC-- Ccucuuucg- ggaggUUCUc uggguGaguc 301 Auga-uaa-G CAU--GCGGA -UCGCA-CGG CUUUAU-G-C CGGC-GUCGG AUCAGGUAAg 361 uU-Ccug-CC CCAUCAGCUU CGGAUGGUAG AGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-U 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCU 721 ggu-g-ga-g Ucg=gucugu -ccU=Ucac- -U----UG-- gu-guug-gu uc----gug- 781 ac--u-gUA- Ucu-cu=gcc CUCcuuggu- uggagcc-aG uguug-gca- UUCAGUuguu 841 ggg-cug--g gga-caau-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-UUGAAUA -CAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-GCgCC A-AAAUAA-U GAUU-AACAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU UGCGGU-ugu 1201 u--CUUGUAg a-cuccg--u AAGCACCUUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CAGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCcGGU-ga auga-GUUUu cauuGac-cU 1561 -g--gUcuUC UUAGAGGGAC UUUCGGU--g acuaACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UUGG CCGUGA-GGC CU-GGGUAAU CUUAUGAACG UGCAUCGUGC 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-UUCAGU ggga=u=gUg 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ABA535185 DEFINITION Aulacoseira baicalensis 18S rRNA gene, isolate 8. ACCESSION AJ535185 VERSION AJ535185.1 GI:41392038 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Aulacoseira baicalensis ORGANISM Aulacoseira baicalensis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1801) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1801 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 464 a 350 c 482 g 496 t 9 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAuAAGAa-c uu-------U CGAG-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -YAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUCGUAUUUA UUAGGUuACA AAACCAAc-- Ccucuuucg- ggaggUUCUc uggguGaguc 301 Auga-uaa-G CAU--GCGGA -UCGCA-CGG CUUUAU-G-C CGGC-AUCGG AUCAGGUAAg 361 uU-Ccug-CC CCAUCAGCUU CGGAUGGUAG RGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-U 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCU 721 ggu-g-ga-g Ucg=gucugu -ccU=Ucac- -U----UG-- gu-guug-gu uc----gug- 781 ac--u-gUA- Ucu-cu=gcc CUCcuuggu- uggagcc-aG uguug-gca- UUCAGUuguu 841 ggg-cug--g gga-caau-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-UUGAAUA -CAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-GCgCC A-AAAUAA-U GAUU-AACAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU UGCGGU-ugu 1201 u--CUUGUAg a-cuccg--u AAGCACCUUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CWG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CAGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GARUGAUUUG UC-UGGUUAA UUCCRUUAAC 1501 R-AA-C-GAG ACCCCCGCCU GCU-AAAYAG -UCcGGU-ga auga-GUUUu cauuGac-cU 1561 -g--gUcuUC UUAGAGGGAC UUUCGGU--g rcuaACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UUGG CCGUGA-GGC CU-GGGUAAU CUUAUGAACG UGCAUCGUGC 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CWUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-UUCAGU ggga=u=gUg 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AIS535183 DEFINITION Aulacoseira islandica 18S rRNA gene, from Ireland. ACCESSION AJ535183 VERSION AJ535183.1 GI:41392036 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Aulacoseira islandica ORGANISM Aulacoseira islandica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1803) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1803 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 468 a 350 c 485 g 498 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAuAAGAa-c uu-------U CGAG-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUSCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUCGUAUUUA UUAGGUuACA AAACCAAc-- Ccucuuucg- ggaggUUCUc uggguGaguc 301 Auga-uaa-G CAU--GCGGA -UCGCA-CGG CUUUAU-G-C UGGC-GACGG AUCAUGUAAg 361 uU-Ccug-CC CCAUCAGCUU CGGAUGGUAG AGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-U 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCU 721 ggu-g-ga-g Ucg=gucugu -ccU=Ucac- -U----UG-- gu-guug-gu uc----gug- 781 ac--u-gUA- Ucu-cu=gcc CUCcuuggu- uggagcc-aG uguug-gca- UUCAGUuguu 841 ggg-cug--g gga-caau-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-UUGAAUA -CAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-GCgCC A-AAAUAA-U GAUU-AACAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU UGCGGU-ugu 1201 u--CUUGUAg a-cuccg--u AAGCACCUUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCS-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCcGGU-ga auga-GUUUu cauuGac-cU 1561 -g--gUcuUC UUAGAGGGAC UUUCGGU--g acuaACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UCGG CCGUGA-GGC CU-GGGUAAU CUUAUGAACG UGCAUCGUGC 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-UUCAGU ggga=u=gUg 1921 gcu-guaaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAgc~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ASK535184 DEFINITION Aulacoseira skvortzowii 18S rRNA gene,. ACCESSION AJ535184 VERSION AJ535184.1 GI:41392037 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Aulacoseira skvortzowii ORGANISM Aulacoseira skvortzowii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1801) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1801 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 466 a 352 c 486 g 496 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~CCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAuAAGAa-c uu-------U CGAG-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUCGUAUUUA UUAGGUuACA AAACCAAc-- Ccucuuucg- ggaggUUCUc uggguGaguc 301 Auga-uaa-G CAU--GCGGA -UCGCA-CGG CUUUAU-G-C CGGC-GACGG AUCAUGUAAg 361 uU-Ccug-CC CCAUCAGCUU CGGAUGGUAG AGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-U 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAS CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCU 721 ggu-g-ga-g Ucg=gucugu -ccU=Ucac- -U----UG-- gu-guug-gu uc----gug- 781 ac--u-gUA- Ucu-cu=gcc CUCcuuggu- uggagcc-aG uguug-gca- UUCAGUuguu 841 ggg-cug--g gga-caau-c auc-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-UUGAAUA -CAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-GCgCC A-AAAUAA-U GAUU-AACAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU UGCGGU-ugu 1201 u--CUUGUAg a-cuccg--u AAGCACCUUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCcGGU-ga auga-GUUUu cauuGac-cU 1561 -g--gUcuUC UUAGAGGGAC UUUCGGU--g acuaACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UCGG CCGUGA-GGC CU-GGGUAAU CUUAUGAACG UGCAUCGUGC 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GGCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-UUCAGU ggga=u=gUg 1921 gcu-guaaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAgc~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY121822 DEFINITION Aulacoseira skvortzowii 18S ribosomal RNA gene, partial sequence. ACCESSION AY121822 VERSION AY121822.1 GI:22651791 KEYWORDS . SOURCE Aulacoseira skvortzowii ORGANISM Aulacoseira skvortzowii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1801) AUTHORS Sherbakova,T.A. and Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (13-JUN-2002) Limnological Institute of the Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya, 3, Irkutsk 664033, Russia MEDLINE NONE FEATURES Location/Qualifiers source 1..1801 /organism="Aulacoseira skvortzowii" /db_xref="taxon:202471" rRNA <1..>1801 /product="18S ribosomal RNA" BASE COUNT 467 a 351 c 486 g 496 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAa-c uu-------u cgag-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUcGUAUUUA UUAGGuUACA AAACCAAC-- Ccucuuucg- ggagguucuc ugggugaguc 301 auga-uaa-g cau--gcGGA -UCGca-cgg cuuuaugg-c cggc-gacGG AUCAUGUAAG 361 UU-CCUG-CC CCAUCAGCUU CGGAUGGUAG AGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-U 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAS CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCu 721 ggu-g-ga-g ucg=gucugu -ccu=ucac- -u----ug-- gu-guug-gu uc----gug- 781 ac--u-gua- ucu-cu=gcc cuccuuggu- uggagcc-ag uguug-gca- uucaguuguu 841 ggg-cug--g gga-caau-c aUC-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-uugaaua -cAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-gCGCC A-AAaUAA-U GAUU-AACAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU UGCGGU-Ugu 1201 u--cuuguag a-cuccg--u aagcaccuUA UGAGAAAUCA --AAGUG-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -uccggu-ga auga-guuuu cauugac-cu 1561 -g--gucuUC UUAGAGGGAC UUUCggu--g acuaaccgaa -ggaaguugg gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UCGG CCGUGA-GGC CU-GGGUAAU CUUAUGAACG UGCAUCGUGC 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GGCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-uucagu ggga=u=gug 1921 gcu-guaaga acuUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY121818 DEFINITION Aulacoseira subarctica 18S ribosomal RNA gene, partial sequence. ACCESSION AY121818 VERSION AY121818.1 GI:22651787 KEYWORDS . SOURCE Aulacoseira subarctica ORGANISM Aulacoseira subarctica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Aulacoseiraceae; Aulacoseira. REFERENCE 2 (bases 1 to 1799) AUTHORS Sherbakova,T.A. and Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (13-JUN-2002) Limnological Institute of the Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya, 3, Irkutsk 664033, Russia MEDLINE NONE FEATURES Location/Qualifiers source 1..1799 /organism="Aulacoseira subarctica" /db_xref="taxon:202472" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 456 a 340 c 485 g 482 t 36 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUGUCAU UAAG-GACUG 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAa-c uac------u cgag-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAGAUCCGAC -----UUCG- -----GGAGG 241 AUcguauuua uuaggUuaca aaACCAAC-- Ccucuuucg- ggagguucuu ugggugaguc 301 auga-uaa-g cau--gcGGA -UCGCa-ggg cuuuacgg-c cggc-gacgg aucauguaag 361 uu-ccug-CC CUAUCAGCUU CGGAUGGUAG GGUAU-UGGC CUACCAUGGC GUUAACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-GCAAA-C 601 ACCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGN NNNNNNNNNN NNNNNNNNNN 661 NNNNNNNNNN NNNAUAUUAA AGU-UGC-UG CAGUUA-AAA AGCUCGUAGU U--aauuucu 721 ggu-g-ga-u ggg=gucugu -ccu=ucac- -u----ug-- gu-guag-gu uc----gug- 781 ac--u-ugu- -cu-cu=gcc cuccuuggc- cggagcc-ag uguug-gca- UUAAGUuguc 841 ggg-cug--g gga-cggu-c aUC-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg cc-uugaaua -cAUUAGCAU GGAAUAAUGA AAUAGGGUUU UG-GCACUAU 961 UUU-GUUGGU UUGC-gcgcc g-aaacaa-U GAAA-AAUAG GGACAGUU-U GGGGAUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACCAUGCCG ACUAGGGAUU UGCGGU-Ugu 1201 u--cuuguag a-cuccg--u aagcaccuUA UGAGNNAUCA --AAGUG-UU UGGGUU-CCG 1261 GUGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UCG -GGCUUAAUU UGACUACACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -ACuggu-ga auga-GUUUu cauuG-a-cu 1561 -g--gucuUC UUAGAGGGAC uuucggu--g acuaaccgaa -ggaaguugg gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGAUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A GAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGGGAACG UGCAUCGUGA 1741 UAGGGAUUGA AUAUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gg-u=ccgu ucc-uuuagu ggga=u=gug 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGUUGA CCCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ACRNAR18S DEFINITION A.curvatulus 18S rRNA gene. ACCESSION X85401 NID g1418297 VERSION X85401.1 GI:1418297 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Actinocyclus curvatulus. ORGANISM Actinocyclus curvatulus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Hemidiscaceae; Actinocyclus. REFERENCE 2 (bases 1 to 1800) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1800 /organism="Actinocyclus curvatulus" /strain="AWI 85" /db_xref="taxon:49231" rRNA 1..1800 /product="18S ribosomal RNA" BASE COUNT 517 a 322 c 432 g 529 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UACAAGAA-U UUU--AC-UC UAAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC GGCUUUAACU -UAUUU-GAU AA-UUACU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUA- UAAACCGGAC U----UUAG- ----GGAACG 241 GUUGUAUUUA UUAGA-AACA A-accaac-- Cuuc-UUCG- -gaagUAUGU uugguGAUuc 301 Auaa-uaa-C UUG--AUGGA -UCGCA-UGG UUUUUa-C-C CAGC-GACAA AUCAUUCAUg 361 uU-Uccg-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUUACGGGU 421 GACGGAGGGU UAGGGCUUGA CCCCGGAGAG GGAGCCUGAG AAACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCU -GGGGCA--U UUUGC-UCUG GCAAUUGGAA UG-AG-AACC AU-UUAAA-U 601 CUCAUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAuUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCcCGUAGU U-GGAUUUCu 721 ggu-a-ga-a gua=gugacC -Uug-gguc- -U----UU-- ga-ccua-UG AA----guu- 781 ac--u-a-U- cuu-cA=acc aUCCUugaa- gagauuu-ag uuu-g-gca- UUAAGUuguc 841 gaa-cua--a aga-uauu-c aUC-UUUUAC UGUGAAAAAA UCAGAACGU- UC-AAAG-UA 901 AGCAUUU-Ag cU-uugAAUG -UAUUAGCAU GGAAUAAUGA AaUAggaCUU AG-GUACUAC 961 UUU-GUUGGU UUAU-gcaCC U-AGgUAA-U GAUU-AAUAG GGAUAGUU-- GGGGGUAUU- 1021 CGUAUUCCAA UGUUAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACAA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAAGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGGGAUG GGUGGU-Ugu 1201 --gcaaaca- a-caccU--u CCGCACCUUC CGAGAAAUCA --AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGUCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-AUGU GGAGCA-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU gCU-AAaUAG -CuaAuA-Ua augU-UUGUU cauuguU-Uu 1561 -u--agcuUC UUAGAGGAAC UUUUCGU--g acuaACGAAa -GGAAGUUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG ACGGCACGCG CGCUACACUG AUGCAUUCAA 1681 CAAGUAU--A UAACC-UUAG CCGAGACGGU U--GGGUAAU CUUAUAAAUG UGCGUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UAUCUAGUAA GUGCG-CUUC 1801 -AUCAAAGCG UGCUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAAAC CUGGGAuauu -agau=augu gcu-gUUUua gGua=u=gug 1921 uuu-aguaga aCUCGUUUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ASI535182 DEFINITION Actinoptychus sinensis 18S rRNA gene, clone p394. ACCESSION AJ535182 VERSION AJ535182.1 GI:41392035 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Actinoptychus sinensis ORGANISM Actinoptychus sinensis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Coscinodiscales; Heliopeltaceae; Actinoptychus. REFERENCE 2 (bases 1 to 1771) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1771 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 481 a 347 c 457 g 486 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUGAGGA-U CAU--AC-AC CGAA-AC-U- GCGAAUG-GC 121 UCAUUACAUA GGUCAUAAUU -UACUU-GAU AA-U-caa-- --UA-CUACU UGG-AUAUCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCCAA- AAAACCCUAC C----UUUUC ----GGACGG 241 GUGGUAUUUA UUAGA-uaga a-accaac-- Ccuc-UUCG- -gaggUGCUU uugguGAUuc 301 Auaa-uaa-C UUU--GCGGA -UCGCA-UGG CUGUGu-G-C CGGC-GACAG AUCAAUCAAg 361 uU-Uccg-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUUACGGGU 421 GACGGAGGGU UAGGGCUCGA CCCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-GAUAAA 541 UAACAAUGCC -GGGGCU--U AUUGC-UCGG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUCUAC UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAuUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCuCGUAGU U-GGAUUUCu 721 ggu-u-ggaa gca=aucggu -gug=gcac- -uc---ug-- gu-gcua-ca ac----cug- 781 uau-u-gua- -uc-ug=acc auccuuggg- aagaauu-ua ucu-g-gca- UUAAGUuguc 841 g-g-gua--a agg-aaaccc auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-cg ccguugaaua -UAUUAGCAU GGAAUAAUGA UaUAggaCCU AG-GUACUAU 961 UUU-GUUGGU UUGU-gcaUC A-AGgUAA-U GAUC-AAUAG GGAUAGUC-- GGGGGUAUU- 1021 CGUAUUCCAC UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACUAUA AACAAUGCCG ACUAAGGAUU GGCGGU-Cgu 1201 u---caauug a-caccG--c CAGCACUUUA GGAGAAAUCA --AAGUU-UU UGGGUU-CUG 1261 GGGG-GAUUA -UGGUC-G-C AAGUCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-AAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACG -CGGGA-AAC UUUACCAGGU 1381 CCAGACACAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUGU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU gCU-AAaUAG -UccCgU-Aa augA-AUAUU cauugaC-Ga 1561 -g--ggcuUC UUAGAGGGAC UUUUGGU--g acuaACCAAa -GGAAGCCGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCGGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGAGGCC U--GGGCAAU CUUGUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UUUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAUUGGUC CGGUGAAGCC UCGGGAcugu -gggu=augu ucc-uuuacu ggga=c=gua 1921 ucu-ucagga acuugucUAA ACCUUAUCAA UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCU~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CR18SRR DEFINITION C.radiatus (CCMP 309) 18S rRNA gene. ACCESSION X77705 VERSION NONE KEYWORDS 18S ribosomal RNA. SOURCE Coscinodiscus radiatus ORGANISM Coscinodiscus radiatus Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 2 (bases 1 to 1811) AUTHORS Medlin,L.K. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456329 MEDLINE NONE FEATURES Location/Qualifiers source 1..1811 /organism="Coscinodiscus radiatus" /strain="CCMP 309" rRNA 1..1811 /product="18S ribosomal RNA" BASE COUNT 503 a 330 c 453 g 523 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU AUGCUUGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG Ucuaauug-g aauugacuau ugaa-AC-U- GUGAACU-GC 121 UCAAUAAAUC GGUUAUAAUU -UACUU-GAU GA-UUUUU-- --UG-CUACU UGG-AUAACU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGCA- AAGUCUUGAC UAUC-CUUG- -GAUAGAAGA 241 GAUGCAUUUA UCAGAAcuaa a-gccaac-- Ccuc-cuug- -gaggaaaua uuggugAUUC 301 AUGA-UAA-s Uua--guGGA -UUGUA-UGG Uuucau-ACU UGAU-GACAC AUCAUCCAAg 361 uu-uccg-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 GACGGAUGGU UAGGGCUGGA CCCCGGAGAG sGAGCCUGAG AAACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUACA 541 UAACAAUGCC -GUGCCC-uc auGGG-UAUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCA AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC G-UAAUUCCA 661 GCUCCAAUAG CAUAUAUUAA AGU-UGU-UG UAGUUA-AAA AGCUCGUAGU U-Ggauuucu 721 ggu-g-gg-a gca=aucagu -gug=acc-- -uu---au-- -g-guuu-ca ac----uug- 781 uau-u-guc- -uc-ug=gcc aucuuuggg- gagaguc-ug ucu-g-gca- uuagguuguc 841 ggg-cag--u gga-ucuc-c auc-UUUUAC UGUGAAAAAA AUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccaauGAAUA -UAUUAGCAU GGAAUAAUCA GAUAGGACCC UG-GUAcUAU 961 UUG-GUUGGU UUGU-guGCC A-uGGUAA-U GAUU-AAUAG GGAUAGUU-- GUGGGUAUU- 1021 UGUAUUGCGA UGUCAGAGGU GAAAUUCUUG GAUUUCCGCA AGACAGACAA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCAGG-agu 1201 u---aauaug a-cccug--u cagcaccuuA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGUCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-U-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGA 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUacau-ga auga-uuuuu cauucau-ga 1561 -g--aucuUC UUAGAGGGAC uUUUGGU--g acuaACCAAA -GGAAGUUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG UGCUACACUG AUGCAUUCAA 1681 CAAGcau--A UAACC-UUGG UCGAAU-GGC CU-GGGCAAU CUUGUAAACG UGCAUCAUGA 1741 UAGGGAUAGA UUAUUGAAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA AUGCA-GAUC 1801 -AUCAAUCUG UGUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGGGAccgu -guuu=ggau guc-uuuauu gaug=u=cug 1921 auu-auggga aCUUGUcuGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS RIZRRNAA DEFINITION Rhizosolenia setigera 16S-like ribosomal RNA, complete. ACCESSION M87329 VERSION NONE KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Rhizosolenia setigera (sub_species Brightw) rRNA. ORGANISM Rhizosolenia setigera Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1800) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry MEDLINE NONE FEATURES Location/Qualifiers rRNA 22..1773 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 503 a 341 c 450 g 506 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAAUA-U Uuu--au-AG UAAA-AC-U- GCGAAUG-GC 121 UCAUUAAAUC AGUAUUAAUU -UACAU-GAU AA-UCCU--- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCUUA- AAUGCCGACU G----CUUG- ----CAGAAG 241 GCAGCAUUUA UUAGA-uaga a-GCCAUC-- Ccuc-uucg- -gagguauuu -UGGUGAAUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG Cucuac-G-C CGGC-GACAG AUCAUUCAAg 361 uu-ucug-cC CUAUUAGAUU UGGAUGGCUG UGUAU-UGGA CAGCCAUGUC UUUGAUGGGU 421 AACGGAGAAU UAGGGUCCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGUCU-ac uaAGA-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaauuucu 721 ggu-g-gg-a gcg=aucggu -cca-ucc-- -uu-cacu-- -g-guug-ga a-----ccug 781 au--u-g-u- cuc-cc=gcc auccaugga- gagaacu-ua ucu-g-gca- uuaaguuguc 841 ggg-uug--g caa-ucuu-c auc-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUA UG-GUAcUAU 961 UUU-GUUGGU UUGU-gcACC A-UGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAAGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGAGAUC GGCAGU-ugu 1201 u---aauaug a-cacug--u cggcaucuuA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGC--UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGCUUAA UUGCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAA -UCACGU-Ga auga-auuau cauugau-ga 1561 -u--ggUUUC UUAGAGGGAC UUUUGGU--g acuaACCAAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGcuu--A UAACC-UUGG CCGAGA-GGC U--GGGCAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -gguc=uggu ugc-uuuauu ggaa=c=cug 1921 acu-gugaga aCCUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAGC~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS GFL535191 DEFINITION Guinardia flaccida 18S rRNA gene, clone p788. ACCESSION AJ535191 VERSION AJ535191.1 GI:41393035 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Guinardia flaccida ORGANISM Guinardia flaccida Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Rhizosoleniophycidae; Rhizosoleniales; Rhizosoleniaceae; Guinardia. REFERENCE 2 (bases 1 to 1775) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1775 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 506 a 337 c 435 g 496 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~CCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -CGU-CUAAG UAUAAAUA-U Uau--ac-AG UAAA-AC-U- GCGAAUG-GC 121 UCAUUAAAUC AGUACUAAUU -UAAAU-GAU AA-UCCU--- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCUUA- CAUGCCCGAC U----UUAC- ----AGAAAG 241 GCAGCAUUUA UUAGA-uaga a-GCCAAC-- Ccu--uucg- --aggaagau -UGGUGAAUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG Cucuac-G-C CGGC-GACAG AUCAUUCAAg 361 uu-ucug-cC CUAUUAGAUU UGGAUGGCUG UGUAU-UGGA CAGCCAUGUC UUUGAUGGGU 421 AACGGGGAAU UAGGGUCCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGUCU-ac uaAGA-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuucu 721 ggc-g-gg-a gcg=aacggu -cua-uca-- -uu-cauu-- -u-guua-ga a-----ccug 781 au--c-g-u- cuc-cu=gcc auccaugaa- gagagcu-ua ucu-g-gca- uuaaguuguc 841 gga-uua--g uaa-ucuu-c auc-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCAUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUA UG-GUAcUAU 961 UUU-GUUGGU UUGU-gcACC A-UAGUAA-U GAUU-AAUAG GGACAGUU-- GggGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUg GAUUUAUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAAGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGuagu cuuaaccaua aacuaugcca acuagagauc ggcagu-ugu 1201 u---aauauG A-CACUG--U CGGCAUCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGCUUAA UUGCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAA -UCACGU-Ga auga-auuau cauugAu-ga 1561 -u--ggUUUC UUAGAGGGAC UUUUGGU--g acuaACCAAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGcuu--A UAACC-UUGG CCGAGA-GGC cu-gggcaau cuuauaaacc UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGNCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gguc=aggu ugc-uuuauu ggag=c=cug 1921 acu-gugaga aCCUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS GDE535192 DEFINITION Guinardia delicatula 18S rRNA gene, clone p146. ACCESSION AJ535192 VERSION AJ535192.1 GI:41393036 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Guinardia delicatula ORGANISM Guinardia delicatula Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Rhizosoleniophycidae; Rhizosoleniales; Rhizosoleniaceae; Guinardia. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1798 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 493 a 346 c 459 g 500 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-A Uau--ac-AG UAAA-AC-U- GCGAAUA-GC 121 UCAUUAUAAC AGUUAUAGUU -uauuu-gau ga-ucCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAAC- AAAGCCUGAC C----UUUU- ----GGAAGG 241 GCAgcaagua uuaga-uuaa a-GCCAUC-- Ccuc-cuug- -gagguucuu -UGGUGAUUC 301 AUAA-UA--c cua--uuaua -ucgca-ugg ccuugu-g-c cggc-gauGG AUCAAACAAg 361 uu-ucug-cC CUAUUAGAUU UGGUUGGUAG UGUAU-UGGA CUACCAAGUC AAUUAUGGGU 421 AACGGGGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGAUCC-ac uaGGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UCAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA UUU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggucgucu 721 ggc-g-gg-a gug=aucggu -ccg-gcuc- -u----uu-- ga-gcgg-gu ac----uugu 781 gu--c-a-u- cuc-cu=gcc aucauugag- gagagcc-ua ucu-g-gca- uuagguuguc 841 ggg-uag--g gga-ucuu-c auc-CUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCAUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUG UG-GUAcUAU 961 UUU-GUUGGU UUGU-guACC A-UAGUAA-U GAUU-AAUAG GGAUAGUC-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CCUAACCAUA AACUAUGUCA ACUAGGGAUC GGCAGU-ugu 1201 u----caauG A-CACUG--U CGGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGUCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGC--UGC -GGCUUAAUU UGACUCAACA -CGGGG-AAA CUUACCAGGU 1381 CCAGACAUAG G-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGCUUAA UUGCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCGCAC-Ca auga-auuau cauugGc-ag 1561 -c--ggGUUC UUAGAGGGAC UUUCUGU--g acuaACAGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAGUCAA 1681 CAAGcuu--A UAACC-UUGG CCGAGA-GGC ca-gggcaau cuuguuaacU UGCAUCGUGA 1741 UAGGGAUUGG CACUUGUAAU UAUUUGCCAU GAACGAGGAA UUCCUAGUAA AUAUG-UUUC 1801 -AUCAAACCG UGUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gguc=agcu ucc-uucauu ggag=a=cug 1921 acu-gugaga aCCUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CHI535179 DEFINITION Corethron hystrix 18S rRNA gene, clone p418. ACCESSION AJ535179 VERSION AJ535179.1 GI:41393030 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Corethron hystrix ORGANISM Corethron hystrix Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Corethraceae; Corethron. REFERENCE 2 (bases 1 to 1772) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1772 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 486 a 330 c 449 g 505 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~GUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAGCA-u uau--ac-AG UGAA-AC-U- GUGAAUG-GC 121 UCAUUAAAUC AGUCAUUAUc -UACAU-GAU AA-UUCC--- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAAA- AAUACCUGAC CU---UUU-- ---AGGAAGG 241 GUAGUAUUUA UUAGA-UUGA A-accaac-- cUuu-uUCG- -GaagUGUUU uugguGAUuc 301 Auaa-uaa-C UUU--UCGGA -CCGCA-UGA CCUUGU-G-U UGGC-GGUAG AUCAUUCGAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-AU ACAGG-UCUG GCUUUUGGAA UG-AG-AGCA AG-UUAAA-U 601 CGAUCA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUSCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-u-gg-g cug=gugggu -C=u-gcuc- -u----uu-- ga-guau-gc a-----ccu- 781 au-cc-a-g- -uu-ug=acc aUCCUuugg- gagaacc-au aGu-g-gcA- UUAAGUuguu 841 gGu-gug--g aua-uccc-a aUC-UUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UAUUAGCAU GGAAUAAUGA cAUAGGACUA UU-GUACUAU 961 UUU-GUUGGU UUGU-gcgCA A-UAgUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AA-GA-UGUU UUCAUUAAUC AAGAACGAAA -GY-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUC GGUGGA-auu 1201 g-uauuacaC A-AUCCA--U CGGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GA-------- -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAuugauuug uc-ugcuuaa uugcguUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCCAGU-Ga auga-uuacu cauugAc-uu 1561 -g--gUcuUC UUAGAGGGAC UUUUGGU--g acuaACUAAa -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCGUUCAG 1681 AAAGUAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUUUGAAUG CGCAUCGUGA 1741 UAGGGAUCGA UUAUUGCAAU UAUUAAUCGU GAACGAGGAA UUCCUAGUAA ACGCA-CGUC 1801 -AUCAACGUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -gguc=UU-u uuc-UUAAUU ggaa=-=CUg 1921 acc-gugaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CCRNAR18S DEFINITION C.criophylum 18S rRNA gene. ACCESSION X85400 NID g1418411 VERSION X85400.1 GI:1418411 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Corethron criophilum. ORGANISM Corethron criophilum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Corethraceae; Corethron. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1798 /organism="Corethron criophilum" /db_xref="taxon:49243" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 491 a 338 c 455 g 510 t 4 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGYCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAGCA-u uau--ac-AG UGAA-AC-U- GUGAAUG-GC 121 UCAUUAAAUC AGUCAUUAUc -UACAU-GAU AA-UUCC--- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAAA- AAUACCUGAC CU---UUU-- ---AGGAAGG 241 GUAGUAUUUA UUAGA-UUGA A-accaac-- cUuu-uUCG- -GaagUGUUU uugguGAUuc 301 Auaa-uaa-C UUU--UCGGA -CCGCA-UGA CCUUGU-G-U UGGC-GGUAG AUCAUUCGAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-AU ACAGG-UCUG GCUUUUGGAA UG-AG-AGCA AG-UUAAA-U 601 CGAUCA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-u-gg-g cug=gugggu -C=u-gcuc- -u----uu-- ga-guau-gc a-----ccu- 781 au-cc-a-g- -uu-ug=acc aUCCUuugg- gagarcc-au aGu-g-gcA- UUAAGUuguu 841 gGu-gug--g aua-uccc-a aUC-UUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UAUUAGCAU GGAAUAAUGA cAUAGGACYA UU-GUACUAU 961 UUU-GUUGGU UUGU-gcgCA A-UAgUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AA-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUC GGUGGA-auu 1201 g-uauuacaC A-AUCCA--U CGGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGCUUAA UUGCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCCAGU-Ga auga-UUACu cauuGAc-u- 1561 -g--gUcuUC UUAGAGGGAC UUUUGGU--g acuaACUAAa -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG RUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCGUUCAG 1681 AAAGUAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUUUGAAUG CGCAUCGUGA 1741 UAGGGAUCGA UUAUUGCAAU UAUUAAUCGU GAACGAGGAA UUCCUAGUAA ACGCA-CGUC 1801 -AUCAACGUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -gguc=UU-u uuc-UUAAUU ggaa=-=CUg 1921 acc-gugaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CIN535180 DEFINITION Corethron inerme 18S rRNA gene, clone p534. ACCESSION AJ535180 VERSION AJ535180.1 GI:41393031 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Corethron inerme ORGANISM Corethron inerme Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Corethraceae; Corethron. REFERENCE 2 (bases 1 to 1809) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1809 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 486 a 362 c 465 g 496 t ORIGIN 1 ~~~~uucguc gacAACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAGCA-u uau--ac-AG UGAA-AC-U- GCGAAUG-GC 121 UCAUUACAAC AGUCAUUAUc -UACUU-GAU AA-UCCC--- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAAA- AAUACCCGAC CU---UUU-- ---AGGAAGG 241 GUAGUAUUUA UUAGA-UUGA A-accaac-- cUuc-uUCG- -GgagUGUUU uugguGAUuc 301 Auaa-uaa-C UUU--GCGGA -CCGCA-CGA CCUUGU-G-U UGGC-GGUAG AUCAAUCGAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGGC -GGGCCU-AU ACAGG-UCUG CCUUUUGGAA UG-AG-AGCA AG-UUAAA-U 601 CGAUCA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-u-gg-g cau=gUgggu -C=c-gcuc- -u---uac-- ga-gugu-gc a-----=cc- 781 au-ac-a-g- -uc-ug=gcc aUCCUuugg- gagagcc-ac aGu-g-gcA- UUAAGUuguu 841 gGu-gug--g gga-uccc-a aUC-CUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UAUUAGCAU GGAAUAAUAA cAUAGGACUA UU-GUACUAU 961 UUU-GUUGGU UUGccgcaCA A-UAgUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AA-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUC GGUGGA-gcu 1201 g-uauuacaC A-CUCCA--U CGGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGCUUAA UUGCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UCCAGU-Ga auga-UUucu cauugAc-uc 1561 -g--gUcuUC UUAGAGGGAC UUUUGGU--g acuaACCAAa -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCGUUCAA 1681 CGAGUGU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUUUGAAAG CGCAUCGUGA 1741 UAGGGAUCGC UCCUUGCAAU UUUGGAGCGU GAACGAGGAA UUCCUAGUAA ACGCA-CGUC 1801 -AUCAACGUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGUC UCGAGAuugu -gguc=CU-u ucc-UUCAUU ggga=-=UUg 1921 acc-gugaga aCCUGCCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PSO535174 DEFINITION Paralia sol 18S rRNA gene, clone p295. ACCESSION AJ535174 VERSION AJ535174.1 GI:41393025 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Paralia sol ORGANISM Paralia sol Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Paraliales; Paralia. REFERENCE 2 (bases 1 to 1807) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1807 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 486 a 345 c 467 g 509 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCGU UCGCUUGUCU CAAU-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACa-a uuuauau-AG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAAAUC AGUUAUAGUU -uauuu-gau aa-ucccu-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCACU- GACACCCAAC U----UUUC- ----GGACGG 241 GUAGUAUUUA UUAGA-UUGA A-accgaug- Ccu--cuug- --ggguggau augguGAUuc 301 Auga-uaa-c uuuuugcgga -uugua-ugg uuuugu-g-c cagc-aaugg AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUCACUGGU 421 AACGGAGAAU CAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAGU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCU -GGGCCU-AU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AC-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGAACAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-AGACCUCu 721 ggc-g-gg-a cgg=aucgau -ccg-caa-- -au--uaa-- -a-agcgaga ac----uug- 781 au--u-c-gu cuc-ug=gcc aUCCUuggg- gagagcu-ca uCu-g-gcA- UUAAGUuguc 841 gGg-gga--g gga-uuuc-c gUC-GUUUAC UGUGAACAAA AUAGGGCGU- UC-AAAG-CA 901 GGC-UUA-Ug ccAAugAAUA -CAUUAGCAU GGAAUGAUAU uAUAagaccu au-guuuUAU 961 UU--AUCGGU UUGA-UUACC U-AGGUAA-U GAUU-AAUAG GGAUUGUU-- GGGGGUAUU- 1021 CGUAUUCCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGAA AGACGAACGA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGACA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGGGGU-Ugc 1201 u-auaagauG G-CGCCC--U CAGCACCUUA UGAGAAAUCA --AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-U-GGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -CAGUUU-Ga gugu-uugug cucugAu-ac 1561 -u--ugcuUC UUAGAGGGAC UUUagcu--g acuaAGCUAa -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCUGCACGCG CGCUACACUG AUGCAUUCAG 1681 CAAGCAU--A UAACC-UCGG CCGGUA-GGC UU-GGGUAAU CUUCCGAACG UACAUCGUUA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUUCUAGUAA ACaca-gaua 1801 -auuaaucug ugUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAGAUC UCGGGAuuga -accu=uggu gcc-uucauu ggag=c=cug 1921 gug-augcua aCUUGAUCGA ACCUUAUCAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PAL535181 DEFINITION Proboscia alata 18S rRNA gene, clone p433. ACCESSION AJ535181 VERSION AJ535181.1 GI:41393032 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Proboscia alata ORGANISM Proboscia alata Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Rhizosoleniophycidae; Rhizosoleniales; Rhizosoleniaceae; Proboscia. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1798 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 491 a 342 c 449 g 516 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UGUAAAUA-u uuu--ac-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -uauuu-gau ag-ucccu-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC U----UAU-- ----GGAAGG 241 GUAGUAUUUA UUAGA-UUGA A-accaac-- cCuu-uUCG- -GaggUaUUu -ugguGAUuc 301 Auga-uaa-u cau--gcGGA -UUGCA-ugg cuuuuu-g-c cggc-gaugg aucaUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGGAGGGU UAGGGCUCGA CCCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UCAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-CA GCAGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCUGCUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAACUUCu 721 ggu-a-gg-a gua=auuguu -cca-ucac- -u----au-- gu-guug-gu aa----cug- 781 au--u-g-u- cuc-cg=gcc auccuuggg- aaaagcu-ca cau-g-gca- uuagguuguc 841 gag-uaa--g uug-uucc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccAUugAAUA -UAUUAGCAU GGAAUAAUAA gAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGc-gcacc a-gggUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGGGAUU GGUGGU-ugu 1201 u---auuauG A-CUCCA--U CAGCACCUUC UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UCCCGU-Ga auga-AUuuu cauugAu-ga 1561 -g--GUCUUC UUAGAGGGAC UUUUGGU--g cuuaACCAA- -ggaagaUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUAU--A CAACC-UUGG CCGAGA-GAC CU-GGGUAAU CUUUUAAAUg uGCAUCGUGA 1741 UAGGaauaga uuAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGUC UCGGGAuugu -gauc=uggu ucc-uuuauu ggaa=c=cug 1921 acc-acgaga aCUUGCCUAA ACCUUAUUAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS LDA535175 DEFINITION Leptocylindrus danicus 18S rRNA gene, strain KM 9950. ACCESSION AJ535175 VERSION AJ535175.1 GI:41393026 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Leptocylindrus danicus ORGANISM Leptocylindrus danicus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Leptocylindrales; Leptocylindraceae; Leptocylindrus. REFERENCE 2 (bases 1 to 1805) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1805 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 484 a 344 c 460 g 517 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAAUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUGAAUA-u uau--ac-AG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUUUAGCc -UAUUU-GAU AA-UCCCU-- --Ug-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUGCUCAAC C----UCUG- ----GGAAGA 241 GCAGUAUUUA UUAGA-UUGA A-accuuc-- Ccug-cuug- -cggugauuu -aggcgaguc 301 Auaa-uaa-C UUU--ucGAA -UCGCA-UCG ACUUGU-U-C GGGC-GAUGG AUCAUUCGGg 361 aU-Ucug-CC CUAUCAGGUG UGGACGGUAG UGUAU-UGGA CUACCGUGCC AGUAACGGGU 421 AACGGAGGAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AUACA GUGAGGUAGU GAC-AAUAAA 541 UAACGUUGAC -UGGUCU-UA UUAGA-UCAG UCACACGGAA UG-AG-AACA AU-UUAAA-C 601 ACCUUA-ACG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-g-ca-u ucc=acuggc -cua=uugg- -uu-aacu-- cc-aacuugg c-----ucau 781 uu--g-g-a- -au-ac=gcc aucuuuagg- cagaccc-gu cgu-g-gca- uuagguuguc 841 gug-aug--g uua-cgcc-u aUC-GUUUAC UGUGAAGAAA UUAGGGUGU- UC-AAAG-CA 901 GGC-UUA-Ug cc-augaaua -cgUUAGCAU GGAAUAAUGA gAUAGGAUUU CG-GUACUAU 961 UUU-GUUGGU UUGu-guacg g-aaaUAA-U GAUU-AACAG GAACAGUguu guGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGAA AGACGAACGA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUC GGCGGA-ggu 1201 c--uacuuuG A-CUUCG--U CGGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGGAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGAUUUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGUUU GCU-AAAUAA -UCCUAU-Ua augauuuuau uauugAu-gu 1561 -g--GGUUUC UUAGAAAgac uucuugc--g acuagugaga -GGAAGUUGG GGGCUACAUC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG UGCUACACUG AUGCAUUCAC 1681 UGAGUAU--A UAACC-UUGG CCGAGA-GGC UU-GGGUAAU CUUU-UAACg uGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGAUC CGGUGAAGCC UCGGGAuugu -ggcu=uguu ucc-uuuauu ggaa=c=cuu 1921 gcc-gugaga aCCUGUCUAA ACCUUAUCAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS LMI535176 DEFINITION Leptocylindrus minimum 18S rRNA gene, strain BB 951. ACCESSION AJ535176 VERSION AJ535176.1 GI:41393027 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Leptocylindrus minimus ORGANISM Leptocylindrus minimus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Leptocylindrales; Leptocylindraceae; Leptocylindrus. REFERENCE 2 (bases 1 to 1801) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1801 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 480 a 343 c 466 g 512 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCGU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAU--u uu---ac--A UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -uauuu-gau ag-ucccu-- --ug-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUGCCCAAC U----UCU-- ----GGACGG 241 GCAGUAUUUA UUAGA-UUGA A-accauc-- Ccag-cuug- -cuggugaUu -ugguGAUuc 301 Acaa-uaa-c uaa--ucGGA -UCGCA-UGG GUUUAC-C-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGAUG CGGACGGUAA UGUAU-UGGA UUACCGUGUC AGUGACGGGU 421 AACGGAGGAU UAGGGUUCGG UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGAC -GGGCCU-UU UUAGG-UCUG UCACUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCAUUA-ACG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUACAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-g-uc-g cag=-ucguu -ccg-cgugu -uu-aauu-a ca-uguc-ga g-----uugu 781 gu--u-u-g- -cg-uc=gcc aucuuuuag- cagcacc-uu ccu-g-gca- uuagguuguu 841 ggg-uug--g uaa-ugcu-a aUC-GUUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -CGUUAGCAU GGAAUAAUGA gAUAGGACCU UG-AUACUAU 961 UUU-GUUGGU UUGc-gcauC A-AggUAA-U GAUU-AAUAG GGUCAGUU-- GGGGGUAUU- 1021 CGUAUUCCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUu auuaga-gca 1201 u-cugaauaG A-CUUUA--A UAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGGAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -GUUUGC-Ga augguuuuac cauugGc-gu 1561 -a--AUCUUC UUAGAGGGAC UUCUUGC--g acuaGUGAGa -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG UGCUACACUG AUGUGUUCAU 1681 CGAGUGU--A UAACC-UUGG CUGAGA-AG- CU-GGGUAAU CUUUUGAAcU CACAUCGUGA 1741 UAGGGAUUGU UCAUUGCAAU UAUUGAACAU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGAAU CGGUGAAGAC UCGGGAuugc -agca=uugu ucc-uuaauu ggau=c=ggu 1921 gcc-gugaga aCCUGUCUAA ACCUCUUUAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF374479 DEFINITION Thalassiosira oceanica 18S ribosomal RNA gene, partial sequence. ACCESSION AF374479 VERSION AF374479.2 GI:21729617 KEYWORDS . SOURCE Thalassiosira oceanica ORGANISM Thalassiosira oceanica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 3 (bases 1 to 1802) AUTHORS Armbrust,E.V. and Galindo,H.M. TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98195-7940, USA REMARK Sequence update by submitter COMMENT On Jul 11, 2002 this sequence version replaced gi:14210193. MEDLINE 21365169 PUBMED 11472926 FEATURES Location/Qualifiers source 1..1802 /organism="Thalassiosira oceanica" /db_xref="taxon:159749" rRNA <1..>1802 /product="18S ribosomal RNA" BASE COUNT 480 a 357 c 465 g 500 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U CUU--ac-ug ugaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUAGUU -CCUUU-GAU AA-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaga g-accaac-- Ccuc-uucg- -gaggUGCUU -UgguGauuC 301 Auaa-uaa-C UUU--UCGAA -UCGCA-UGG CCCCGU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gcg=accggu -cuc-acac- -c----cu-- gu-guga-ga ac----ucgu 781 gu--u-g-u- cuc-ug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUCAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGUCUU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-GAgAAA-U GAUU-AAUAG GGACAGUU-- GGGGCUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----uuuuG A-CUCCG--U CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 G-UGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -guCCAC-Ga augg-UUUUu cauuGGu-gA 1561 -g--AUCUUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG UCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGGGAuugu -gguc=uggc ucc-UUCAUU gggg=c=cag 1921 acc-gugaga aCUUGUCUGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF374477 DEFINITION Thalassiosira weissflogii 18S ribosomal RNA gene, partial sequence. ACCESSION AF374477 VERSION AF374477.2 GI:21729615 KEYWORDS . SOURCE Thalassiosira weissflogii ORGANISM Thalassiosira weissflogii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 3 (bases 1 to 1805) AUTHORS Armbrust,E.V. and Galindo,H.M. TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98195-7940, USA REMARK Sequence update by submitter COMMENT On Jul 11, 2002 this sequence version replaced gi:14210191. MEDLINE 21365169 PUBMED 11472926 FEATURES Location/Qualifiers source 1..1805 /organism="Thalassiosira weissflogii" /db_xref="taxon:67004" rRNA <1..>1805 /product="18S ribosomal RNA" BASE COUNT 476 a 356 c 470 g 503 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U CUU--ac-ug ugaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUAGUU -CCUUU-GAU AA-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaga g-accaac-- Ccuc-uucg- -gaggUGCUU -UgguGauuC 301 Auaa-uaa-C UUU--UCGAA -UCGCA-UGG CCCCGU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAUUUGGC CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUGGACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gcg=accggu -cuc-acac- -c----cu-- gu-guga-ga ac----ucgu 781 gu--u-g-u- cuc-ug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUCAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGUCUU UG-GUACUAU 961 UUU-GUUGGU CUGC-gCACC A-GAgAAA-U GAUU-AAUAG GGACAGUU-- GGGGCUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----uuuuG A-CUCCG--U CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGGUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -GUCCAC-Ga augg-UUUUu cauuGGu-gA 1561 -g--AUCUUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGUG CGCUACACUG AUGCACUCAG 1681 CGAGCAU--A UAACC-UUGG UCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCU-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGGGAuugu -gguc=uggc ucc-UUCAUU gggg=c=cag 1921 acc-gugaga aCUUGUCUGA ACCUUAUCAU UUAGAGGAGG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGUAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF462058 DEFINITION Thalassiosira rotula strain CCMP1647 18S ribosomal RNA gene, partial sequence. ACCESSION AF462058 VERSION AF462058.1 GI:18540480 KEYWORDS . SOURCE Thalassiosira rotula ORGANISM Thalassiosira rotula Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 2 (bases 1 to 1797) AUTHORS Cordevant,C. and Lange,M. TITLE Direct Submission JOURNAL Submitted (21-DEC-2001) R&D Division, Institut Pasteur de Lille, 1 rue du Professeur Calmette, Lille 59019, France MEDLINE NONE FEATURES Location/Qualifiers source 1..1797 /organism="Thalassiosira rotula" /strain="CCMP1647" /db_xref="taxon:49265" /clone="TR1" rRNA <1..>1797 /product="18S ribosomal RNA" BASE COUNT 473 a 353 c 461 g 510 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~CUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcu--c uuuu-ac-uu ugaaaAC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaua g-accaac-- Ccuc-uucg- -gaggUGCUU -UgguGauuC 301 Auaa-uaa-C UUU--UCGAA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accggu -cac-gcac- -U----CU-- gu-gcgu-ga ac----uugu 781 gu--u-g-u- cucuug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGU UUGC-gUUAC G-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUC GGAGGU-Ugu 1201 u----uuuug a-cuccu--u CGGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUCUAC-Ua aucg-UUUUu gauuGguuaa 1561 -g--AGCUUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUUG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCG-GUUC 1801 -AUCAAACCG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAuugu -ggcu=uggc ucc-UUCAUU gggg=c=cug 1921 acc-gcgaga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCCU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF462059 DEFINITION Thalassiosira rotula strain CCMP1018 18S ribosomal RNA gene, partial sequence. ACCESSION AF462059 VERSION AF462059.1 GI:18540481 KEYWORDS . SOURCE Thalassiosira rotula ORGANISM Thalassiosira rotula Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 2 (bases 1 to 1795) AUTHORS Cordevant,C. and Lange,M. TITLE Direct Submission JOURNAL Submitted (21-DEC-2001) R&D Division, Institut Pasteur de Lille, 1 rue du Professeur Calmette, Lille 59019, France MEDLINE NONE FEATURES Location/Qualifiers source 1..1795 /organism="Thalassiosira rotula" /strain="CCMP1018" /db_xref="taxon:49265" /clone="TR2" rRNA <1..>1795 /product="18S ribosomal RNA" BASE COUNT 473 a 351 c 462 g 509 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~CUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcu--c uuuu-ac-uu ugaaaAC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaua g-accaac-- Ccuc-uucg- -gaggUGCUU -UgguGauuC 301 Auaa-uaa-C UUU--UCGAA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accggu -cac-gcac- -U----CU-- gu-gcgu-ga ac----uugu 781 gu--u-g-u- cuc-ug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUGGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGA UUGC-gUUAC G-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUC GGAGGU-Ugu 1201 u----uuuug a-cuccu--u CGGCACCGUA UGAGAAAUCA --AAGUC-UU UGGCUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAA-C-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUCUAC-Ua aucg-UUUUu gauuGGuuaa 1561 -g--AGCUUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUUG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCG-GUUC 1801 -AUCAAACCG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAuugu -gguu=uggc ucc-UUCAUU gggg=c=cug 1921 acc-gcgaga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF374480 DEFINITION Thalassiosira rotula 18S ribosomal RNA gene, partial sequence. ACCESSION AF374480 VERSION AF374480.2 GI:21729618 KEYWORDS . SOURCE Thalassiosira rotula ORGANISM Thalassiosira rotula Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 3 (bases 1 to 1805) AUTHORS Armbrust,E.V. and Galindo,H.M. TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98195-7940, USA REMARK Sequence update by submitter COMMENT On Jul 11, 2002 this sequence version replaced gi:14210194. MEDLINE 21365169 PUBMED 11472926 FEATURES Location/Qualifiers source 1..1805 /organism="Thalassiosira rotula" /db_xref="taxon:49265" rRNA <1..>1805 /product="18S ribosomal RNA" BASE COUNT 477 a 354 c 463 g 511 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GGUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcu--c uuuu-ac-uu ugaaaAC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaua g-accaac-- Ccuc-uucg- -gaggUGCUU -UgguGauuC 301 Auaa-uaa-C UUU--UCGAA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accggu -cac-gcac- -U----CU-- gu-gcgu-ga ac----uugu 781 gu--u-g-u- cuc-ug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGU UUGC-gUUAC G-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCU-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUC GGAGGU-Ugu 1201 u----uuuuG A-CUCCU--U CGGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUCUAC-Ua aucg-UUUUu gauuGGuuaa 1561 -g--AGCUUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUUG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCG-GUUC 1801 -AUCAAACCG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAuugu -ggcu=uggc ucc-UUCAUU gggg=c=cug 1921 acc-gcgaga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS RIM535178 DEFINITION Rhizosolenia imbricata 18S rRNA gene, clone p839. ACCESSION AJ535178 VERSION AJ535178.1 GI:41393029 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Rhizosolenia imbricata ORGANISM Rhizosolenia imbricata Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Rhizosoleniophycidae; Rhizosoleniales; Rhizosoleniaceae; Rhizosolenia. REFERENCE 2 (bases 1 to 1801) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1801 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 516 a 336 c 433 g 515 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GACUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAca-a uuau-ac-ag ugaa-UC-U- ACGAACG-GC 121 UCAUUAUAAC AGUAAUUGUC -UACAU-GAU AA-UUUU--- --UA-CUACA UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGAUAC- AAAGCCCAAC C----GUAU- ----GGAAAG 241 GCUGCAUUUA UUAGAUuuua A-GCCAAC-- cucc-uuuu- -ggauguauu uUGGUGAAUC 301 AUAA-UAC-C UUA--GUGGA -UCGCA-UGG Cuauau-G-C UGGC-GACAC AUCAUUCGAg 361 uu-ucug-cC CUAUUAGAUU -ggaugguaG UGUAU-UGGA CUACCAUGUC AUUUAUGGGU 421 AACGAGGAAU UAGGGUUUGA CUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGUAAA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGUCC-aa uuGGA-UCUG GCAAUUGGAA UG-AGCAACA AU-UUAA--- 601 CCCUUU-ACG AGU-AAC-CU UGCAAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaauuucu 721 ggu-u-ag-a aua=gucggu -cuu-gcac- -u----ca-- gu-guaa-gu ac----cag- 781 ac--u-c-u- -uc-uu=ccc aucuuuagg- gagaacu-ca uau-g-gca- uuaauuuguu 841 gug-uga--u gua-uccu-u auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUA UG-GUAcUAU 961 UUU-GUUGGU UUGU-gcACC A-UGGUAA-U GAUU-AAAAG AAACAGUC-- AGGGGUAUU- 1021 AGUAUUCCGU AGUCAGAGGU GAAAUUCUUG GAUUUGCGGA AGACUCACAA CU-GCGAAAG 1081 CAUUUACC-A GG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UUAGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUAAACCAUA AACUAUGCCA AUUCGAGAUC CGCAGU-cgu 1201 a---uuuguA A-CACUG--C GGGCAUCGUA UGAGAAAUCA --AAAUC-UA UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GUUUGGUG GAUUGAUUUG UC-UGCUUAA UUGCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GMU-AAAUAg -UCCUGU-Ga auga-auuuu cauugAc-aa 1561 -g--GUCUUC UUAGAGGGAC UUUCGAU--g acuaAUCGAA -GGAAGUUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGA-GGC UU-GGGCAAU CUUGUAAAUG UGCAUCGUGA 1741 UAGGGAUUGA AUAUUGAAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAGUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGAUGAAGCC UCGGGAuugu -gguu=uguu ucc-uuuauu ggaa=g=cug 1921 acc-gugaga aCUUGUCUAA AUCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS RSI535177 DEFINITION Rhizosolenia similoides 18S rRNA gene, clone p837. ACCESSION AJ535177 VERSION AJ535177.1 GI:41393028 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Rhizosolenia similoides ORGANISM Rhizosolenia similoides Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Rhizosoleniophycidae; Rhizosoleniales; Rhizosoleniaceae; Rhizosolenia. REFERENCE 2 (bases 1 to 1813) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1813 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 521 a 339 c 439 g 514 t ORIGIN 1 ~gaauccguc gacAACCUGG UUGAUCCUGC CAGUACUCAU ACGCUCGUCU CAAA-GACUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAca-a uuau-ac-ag ugaa-UC-U- GCGAACG-GC 121 UCAUUAUAAC AGUAAUUGUC CUACAUCGAU AA-uuuu--- --UA-CUACA UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGAUAC- AAAGCCCAAC C----GUAU- ----GGAAAG 241 GCUGCAUUUA UUAGAUuuua A-GCCAAC-- cucc-uuuu- -ggauguauu uUGGUGAAUC 301 AUAA-UAC-C UUA--GUGGA -UCGCA-UGG Cuauau-G-C UGGC-GACAC AUCAUUCGAg 361 uu-ucug-cC CUAUUAGAUU -ggaugguaG UGUAU-UGGA CUACCAUGUC AUUUAUGGGU 421 AACGAGGAAU UAGGGUUUGA CUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGUCC-aa uuGGA-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCAUUA-ACG AGU-AAC-AA -UGGAGGGCA AGUCUGGUGC CAGCAGCCGG GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaauuucu 721 ggu-u-ag-a aua=gucggu -cuu-gcac- -u----ca-- gu-guaa-gu ac----cag- 781 ac--u-c-u- -uc-uu=ccc aucuuuagg- gagaacu-ca uau-g-gca- uuaauuuguu 841 gug-uga--u gua-uccu-u auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUA UG-GUAcUAU 961 UUU-GUUGGU UUGU-gcACC A-UGGUAA-U GAUU-AAAAG AAACAGUC-- AGGGGUAUU- 1021 AGUAUUCCGU AGUCAGAGGU GAAAUUCUUG GAUUUGCGGA AGACUCACAA CU-GCGAAAG 1081 CAUUUACC-A GG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UUAGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUAAACCAUA AACUAUGCCA AUUCGAGAUC CGCAGU-cgu 1201 a---uuuguA A-CACUG--C GGGCAUCGUA UGAGAAAUCA --AAAUC-UA UGGGUU-CCG 1261 GGGGGGAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGC--UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGCUUAA UUGCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UCCUGU-Ga auga-auuuu cauugAc-aa 1561 -g--GUCUUC UUAGAGGGAC UUUCGAU--g acuaAUCGAA -GGAAGUUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGA-GGC UU-GGGCAAU CUUGUAAAUG UGCAUCGUGA 1741 UAGGGAUUGA AUAUUGAAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAGUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGAUGAAGCC UCGGGAuugu -gguu=uguu ucc-uuuauu ggaa=g=cug 1921 acc-gugaga aCUUGUCUAA AUCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PERNAR18S DEFINITION P.elegans 18S rRNA gene. ACCESSION X85388 NID g1419147 VERSION X85388.1 GI:1419147 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Papiliocellulus elegans. ORGANISM Papiliocellulus elegans Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Cymatosiraceae; Papiliocellulus. REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1802 /organism="Papiliocellulus elegans" /db_xref="taxon:49258" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 475 a 361 c 474 g 489 t 3 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -CGU-CUAAG UAUaaAUA-C uuu--ac-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGACGG 241 GUAGUAUUUA UUAGA-UAGA A-accaac-- Ccuc-UUCG- -gaggYGCUC -AgguGAUuc 301 Awga-uaa-C UCU--GCGAA -UCGCA-UGG CCCUGU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUAGA UUCCGGAGAG GGGGCCUGAG AGAUGGCCAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-gg-a gcg=accggu -ccg-gc=c- -u----ua-- gc-gcgg-gu ac----uugc 781 gu----s-u- cuc-cG=gcc aUCCUuggg- gagaGuu-ug ucu-g-gca- UUAAGUuguc 841 ggg-cag--a Gga-uccu-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-GUACUAU 961 UUU-GUUGGU UUGC-GCACC A-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCGGA-cgu 1201 u--CGUUUUg a-cuccg--u CAGCACCGUA UGUGAAAACA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UUCCGC-ga gucu-CUUUa gacuGGC-GA 1561 -G--AGCUUC UUAGAGGGAC AUGGGUU--a uuaaAAUCCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGAAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAAGCC UCGGGAuugu -gguu=gugc ugc-UUUAUU gugg=u=gcg 1921 acc-gcgaga aCUUGUCUAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS DBRNAR18S DEFINITION D.brightwelli 18S rRNA gene. ACCESSION X85386 NID g1418685 VERSION X85386.1 GI:1418685 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Ditylum brightwelli. ORGANISM Ditylum brightwelli Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Lithodesmiaceae; Ditylum. REFERENCE 2 (bases 1 to 1800) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1800 /organism="Ditylum brightwelli" /strain="CCAP 1022/2" /db_xref="taxon:49249" rRNA 1..1800 /product="18S ribosomal RNA" BASE COUNT 472 a 361 c 474 g 490 t 3 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U uuu--ac-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGaAGG 241 GUAGUAUUUA UUAGA-UAGA a-accaac-- Ccuc-CUCG- -gaggUGAUg -uggugAUuc 301 Auaa-uaa-C UCU--GCGAA -U-GCAcUGG CUCCAU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGUUGU UAGGGCAAGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-UUAAA-U 601 CCCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-gg-a gcg=aucggu -cuG-acac- -U----UU-- gu-guGa-gU ac----ucgu 781 au--u-g-U- cuc-cG=gcc aUCCUuggg- cggaGcc-ug ucu-g-gca- UUAAGUuguc 841 ggg-cag--g Gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGU-gUgCC a-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG UCUAGGGAUC GGCGGUcugu 1201 c----UUaug a-caccg--u CGGCACCUUA CGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU gCU-AAaUAU -UgcCGG-Ca au-C-aUCUG uauugCU-Gc 1561 ug--CGAUUC UUAGAGGGAC GUUSCCC--c acaaGGCGAA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCGUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAAA---- CU-GGGCAAU CUUGUUAACG CGCAUCGUGA 1741 UAGGGAUAGA UGAUUGUAAU UAUUCAUCUU GAACRAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG MACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAG UCGAGAuugu -ggcu=Uggu ucc-UUUAUU ggga=c=uUg 1921 gcc-gcgaaa aCUUUUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY188181 DEFINITION Ditylum brightwellii clone 278 18S ribosomal RNA gene, partial sequence. ACCESSION AY188181 VERSION NONE KEYWORDS . SOURCE Ditylum brightwellii ORGANISM Ditylum brightwellii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Lithodesmiaceae; Ditylum. REFERENCE 2 (bases 1 to 1688) AUTHORS Rynearson,T.A. and Armbrust,E.V. TITLE Direct Submission JOURNAL Submitted (25-NOV-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98105, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1688 /product="18S ribosomal RNA" BASE COUNT 441 a 341 c 448 g 458 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAaua-u uuu--ac-ug ugaa-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAga-uaga a-accaac-- Ccuc-cucg- -gaggUGAUG -UgguGauuC 301 Auaa-uaa-C UCU--GCGAA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGUUGU UAGGGCAAGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-UUAAA-U 601 CCCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-g-gg-a gcg=aucggu -cug-acac- -u----uu-- gu-guga-gu ac----ucgu 781 au--u-g-u- cuc-cg=gcc aUCCUuggg- cggagcc-ug ucu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGU-gUGCC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG UCUAGGGAUC GGCGGUcugu 1201 c----uuaug a-caccg--u cggcaccuuA CGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAU -UGccgg-ca au-c-aucug uauugCU-Gc 1561 ug--CGAUUC UUAGAGGGAC GUUCgcc-cc acaaGGCGAA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCGUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAAA-GGC CU-GGGCAAU CUUGUUAACG CGCAUCGUGA 1741 UAGGGAUAGA UGAUUGUAAU UAUUCAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAG UCGAGAuugu -gg~~=~~~~ ~~~-~~~~~~ ~~~~=~=~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY188182 DEFINITION Ditylum brightwellii clone P2A4 18S ribosomal RNA gene, partial sequence. ACCESSION AY188182 VERSION NONE KEYWORDS . SOURCE Ditylum brightwellii ORGANISM Ditylum brightwellii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Lithodesmiaceae; Ditylum. REFERENCE 2 (bases 1 to 1701) AUTHORS Rynearson,T.A. and Armbrust,E.V. TITLE Direct Submission JOURNAL Submitted (25-NOV-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98105, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1701 /product="18S ribosomal RNA" BASE COUNT 440 a 343 c 457 g 461 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAga-uaga a-accaac-- Ccuc-cucg- -gaggUGAUG -UgguGauuC 301 Auaa-uaa-C UCU--GCGAA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGUUGU UAGGGCAAGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-UUAAA-U 601 CCCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-g-gg-a gcg=aucggu -cug-acac- -u----uu-- gu-guga-gu ac----ucgu 781 au--u-g-u- cuc-cg=gcc aUCCUUGGG- cggagcc-ug ucu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGU-gUGCC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG UCUAGGGAUC GGCGGUcugu 1201 c----uuaug a-caccg--u cggcaccuuA CGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAU -UGccgg-ca au-c-aucug uauugCU-Gc 1561 ug--CGAUUC UUAGAGGGAC GUUCgcc-cc acaaGGCGAA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCGUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAAA-GGC CU-GGGCAAU CUUGUUAACG CGCAUCGUGA 1741 UAGGGAUAGA UGAUUGUAAU UAUUCAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAG UCGAGAuugu -ggcu=uggu ucc-UUUAUU ggga=c=uug 1921 gcc-gcgaaa aCUUUUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525671 DEFINITION Bellerochea malleus small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525671 VERSION NONE KEYWORDS . SOURCE Bellerochea malleus ORGANISM Bellerochea malleus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Bellerocheaceae; Bellerochea. REFERENCE 2 (bases 1 to 1759) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1759 /product="small subunit ribosomal RNA" BASE COUNT 462 a 361 c 464 g 472 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAaua-c uuu--ac-ug ugaa-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUAAUAAUU -CAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---CUUG- ---CGGAAGG 241 GUAGUAUUUA UUAga-uaga a-accaac-- Ccuc-cucg- -gaggUGAUG -UgguGauuC 301 Auaa-uaa-C UCU--GCGAA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGUUGU UAGGGCAAGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-UUAAA-U 601 CCCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-g-gg-a gcg=aucggu -ccg-acac- -U----AU-- gu-gugg-gu ac----ucgu 781 au--u-g-u- cuc-cg=gcc aUCCUUGGG- uggagcc-ug ucu-g-gca- UUAGGUuguc 841 ggg-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA AAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGC-gUGCC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG UCUAGGGAUC GGCGGUcgcu 1201 c----uuaug a-caccg--u cggcaccuuA CGAGAAAUCA --AAGUC-UU UGGGUU-CC= 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAA U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU UUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAU -UGccgg-ca auaa-CUCUu uauuGCU-Gc 1561 ug--CGAUUC UUAGAGGGAC UUCUGCC-cc acaaGGCGGA -GGAAGAGGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCGUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAAA-GGC CU-GGGCAAU CUUGUUAACG CGCAUCGUGA 1741 UAGGGAUAGA UGCUUGAAAU UAUUCAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAUUGU -GGCU=UGGU UCC-UUCAUU GGGA=C=UUG 1921 GCCAGCGAAA ACUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS LU18SR DEFINITION L.undulatum 18S rRNA gene. ACCESSION Y10569 VERSION Y10569.1 GI:2832341 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Lithodesmium undulatum. ORGANISM Lithodesmium undulatum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Lithodesmiaceae; Lithodesmium. REFERENCE 2 (bases 1 to 1806) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (15-JAN-1997) L.K. Medlin, Alfred-Wegener-Insitute, Dept of Biological Oceanography, Am Handelshafen, 12, D 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1806 /organism="Lithodesmium undulatum" /db_xref="taxon:59812" rRNA <1..>1806 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1806 /gene="18S rRNA" BASE COUNT 474 a 368 c 473 g 491 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-C UUU--AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUAAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---CUCG- ---CGGAAGG 241 GUAGUAUUUA UUAGA-Uaga a-accaac-- Ccuc-cucg- -gaggugaug -UGGUGAUUC 301 AUAA-UAA-c ucu--gcGAA -UCGCA-UGG Cucuau-G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGUUGU UAGGGCAAGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu cuAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-UUAAA-U 601 CCCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuucu 721 ggc-u-gg-a gcg=aucggu -ccg-acac- -u----uu-- gu-gugg-gu ac----ucgu 781 au--u-g-u- cuc-cg=gcc aUCCUUGGG- UCUAUCU-UG UCU-G-GCA- UUAAGUUGUC 841 GGG-CAG--G GGA-UGCC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGU-GUGCC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG UCUAGGGAUC GGCGGU-CGC 1201 U---CUUAUG A-CACCG--U CGGCACCUUA CGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAA U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU UUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAUUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAC AUGcuug-ua auga-uuacu cauugCu-gu 1561 ug--CAGUUC UUAGAGGGAC GUCCGCU-uc acaaGGCGGA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCGUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAAA-GGC CU-GGGCAAU CUUGUUAACG CGCAUCGUGA 1741 UAGGGAUAGA UGCUUGAAAU UAUUCAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAUUGU -GGCU=UGGU UCC-UUCAUU GGGA=C=UUG 1921 GCC-GCGAAA ACUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS STRNAR18S DEFINITION S.thamesis 18S rRNA gene. ACCESSION X85385 NID g1419302 VERSION X85385.1 GI:1419302 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Streptotheca thamesis. ORGANISM Streptotheca thamesis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Streptothecaceae; Streptotheca. REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1802 /organism="Streptotheca thamesis" /strain="CCAP 1076/1" /db_xref="taxon:49264" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 473 a 365 c 478 g 486 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U UUU--AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---CUCG- ---CGGAAGG 241 GUAGUAUUUA UUAGA-UAGA a-accaAC-- Ccuc-CUCG- -gaggUGAUg -uggugAUuc 301 Auaa-uaa-C UCU--GCGAA -UCGCA-UGG CUCCAU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGUUGU UAGGGCAAGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACG AU-UUAAA-U 601 CCCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-gg-a gcg=aucggU -CCg-acGC- -U----AU-- G--G-g--gu AC----ucgU 781 au--u-g-u- cuc-cG=gcc aUCCUuggg- uggaGcu-ug ucu-g-gca- UUAAGUuguc 841 ggg-cag--g Gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGU-gUgCC a-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG UCUAGGGAUC GGCGGU-Cgc 1201 u---CUUAUg a-caccg--u CGGCACCUUA CGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAA U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU UUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAU -CGcCGG-aa auca-CUUUu gauuACu-gC 1561 Ug--cgauUC UUAGAGGGAC UUCUGCC-cu acaaGGCGGA -GGAAGACGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCGUUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAAA-GGC CU-GGGCAAU CUUGUUAACG CGCAUCGUGA 1741 UAGGGAUAGA UGCUUGAAAU UAUUCAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAuugu -ggcu=Uggu ucc-UUCAUU ggga=c=uUg 1921 gcu-gugaaa aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS LBRNAR18S DEFINITION L.borealis 18S rRNA gene. ACCESSION X85399 NID g1418977 VERSION X85399.1 GI:1418977 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Lauderia borealis. ORGANISM Lauderia borealis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Lauderiaceae; Lauderia. REFERENCE 2 (bases 1 to 1808) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1808 /organism="Lauderia borealis" /strain="CCAP 1044/1" /db_xref="taxon:49255" rRNA 1..1808 /product="18S ribosomal RNA" BASE COUNT 498 a 350 c 445 g 514 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-C uuu--ac-UU UAAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UGUUU-GAU AA-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AUGACCCGAC U---UCGCUU U---GGAAGG 241 GUUGUAUUUA UUAGG-UAAA A-accaac-- Uccc-CUCG- -ggaguGCUG -ugguGAUuc 301 Auaa-uaa-C UUU--GCGAA -UCGCA-UGG CUCUAU-G-C CGGC-GAUGG AUCAUUGAAg 361 uU-Ucug-CC CUAUUAACUC CGGACGGUAU GGUAU-UGGC UUACCGUGGU CGUAAUGGGU 421 AACGAAAAGU UAGGGCUUGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-ACACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGGC -GGGUCU-CU AGAGA-UCUG CCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCA AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC G-UAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGcUCGUAGU U-GAAAUACu 721 gau-u-ua-g ucg=accggu -ccc-gugC- -U----UU-- GUcgcgg-gC ac----UcgU 781 gu--c-g-a- Gcu-ag=auc aUUCUuggu- GAuaacc-ga ucu-g-gca- UUAGGUuguu 841 ggauuuuugg uga-agac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GAC-UUA-Ug ucGUugAAUA -CAUUAGCAU GGAAUAAUAA uAUAGGACUU UU-GUACUAU 961 UUU-GUUGGU UAG--gUgUG A-AAgUAACU GAUC-AACAG GGACAGUC-- GGGCAUAUU- 1021 UGUAUUUCGU UGCUAGAGGU GAAAUUCUUG GAUUUCCGAA AGACAAACUA CU-GCGAAAG 1081 CAUCUAUG-A AG-GA-UGUU UUCAUUAAUC AAGAGCGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGaCGU-ugu 1201 u----UUUUg a-cUcgC--c CAGCACCGUG UGGGAAACCA U-UAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGACUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUCACCAGGU 1381 CCAGACAUAA U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU UUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcgaU-Ga auca-UUCUu gauucAA-GA 1561 -g--agcuUC UUAGAGGGAC gUCCAUU-cu acaaGAUGGA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUAU--A CAACC-UUGA CCGAGA-GGC CC-GGGUAAU CUUUUUAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGUAAU UAUUAAUCUU AAACGAGGAA UUUCUAGUAA ACGUA-UAUC 1801 -AUCAGUAUA CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGCGGUC CGAUAAAGGC UCGGGAaarg -uCcU=Cguu ucc-UUCACU ggag=a=cUU 1921 gAa-uuuuga aCCUGUCUAA AUCUUAUCGC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PGRNAR18S DEFINITION Porosira pseudodenticulata 18S rRNA gene, strain R.M.C. 22. ACCESSION X85398 VERSION X85398.2 GI:27262969 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Porosira pseudodenticulata ORGANISM Porosira pseudodenticulata Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Porosira. REFERENCE 3 (bases 1 to 1803) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (18-DEC-2002) Medlin L.K., Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG COMMENT On Dec 19, 2002 this sequence version replaced gi:1419150. MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1803 /product="18S ribosomal RNA" BASE COUNT 506 a 334 c 437 g 524 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUaaAUA-U uuu--ac-UU UAAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AA-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AUAACCCGAC UA---UUU-- ---UGGAAGG 241 GUUGUAUUUA UUAGG-UAAA a-accaac-- Uccu-UUCG- -aggaUGCUg -uggugAUuc 301 Auaa-uaa-C UUU--GCGAA -UCGCA-UGG AUCUAU-U-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUUAACUU CGGACGGUAU GGUAU-UGGC UUACCGUGGU CAUAAUGGGU 421 AACGAAUAGU UAGGGCUAGA UUUCGGAGAG GGAGCCUGAG AAACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-ACACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGGU -GGGUUU-UU ACAAA-UCUG CCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC G-UAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAAUACu 721 gac-a-ua-g ucg=accggu -cuc=acgc- -a----uu-- gucgugr-rc ac----uugu 781 gu--u-g-u- auu-ag=guc aUUCUugGAu uuuagcc-ag ucu-g-gca- UUAAGUuguc 841 ggg-uug--g uga-aaac-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GAC-UUA-Ug ucGUugAAUA -GAUUAGCAU GGAAUAAUAA UAUAGGACUU UU-GUACUAU 961 UUU-GUUGGU UAG--gUgUA A-AAGUAA-U GAUC-AAUAG GGACAGUU-- GGGCGUAUU- 1021 CGUAUUUCGU UGCUAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACG-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGGCGU-ugu 1201 u----UUUUg a-cucgu--c CAGCACCGUA UGGGAAACCA U-UAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGACUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCU-GGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAA U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU UUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUccgu-ga auca-uuuuu gauugAu-ga 1561 -g--agcuUC UUAGAGGGAC GUCCAUU-cu acaaGAUGGA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--A AAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUUUUAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGUA-UAUC 1801 -AUCAGUAUA CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAACGGUC CGAUGAACAC CCGAGCgcgg -acuu=uguu ucc-UUCAUU ggag=a=uua 1921 aga-ccguaa aCCCGUGUAA AUCUUAUCGU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525672 DEFINITION Detonula confervacea small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525672 VERSION NONE KEYWORDS . SOURCE Detonula confervacea ORGANISM Detonula confervacea Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Detonula. REFERENCE 2 (bases 1 to 1757) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1757 /product="small subunit ribosomal RNA" BASE COUNT 472 a 346 c 451 g 488 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaua g-accaac-- Cguc-uucg- -gacgUGCUU -UgguGauuC 301 Auaa-uaa-C UUA--UCGGA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gcg=accggu -cuc=acac- -u----ca-- gu-gcga-ga ac----ucgu 781 gu--u-g-u- cuc-ug=gcc aUCCUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGGUAA-U GAUU-AAAAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cuccg--c CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGGc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGAGAuugu -ggcc=uggu ucc-UUUAUU ggga=u=uug 1921 gcu-acgaga aCUUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF374478 DEFINITION Thalassiosira guillardii 18S ribosomal RNA gene, partial sequence. ACCESSION AF374478 VERSION AF374478.2 GI:21729616 KEYWORDS . SOURCE Thalassiosira guillardii ORGANISM Thalassiosira guillardii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 3 (bases 1 to 1804) AUTHORS Armbrust,E.V. and Galindo,H.M. TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98195-7940, USA REMARK Sequence update by submitter COMMENT On Jul 11, 2002 this sequence version replaced gi:14210192. MEDLINE 21365169 PUBMED 11472926 FEATURES Location/Qualifiers source 1..1804 /organism="Thalassiosira guillardii" /db_xref="taxon:159748" rRNA <1..>1804 /product="18S ribosomal RNA" BASE COUNT 482 a 355 c 463 g 504 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U CUU--ac-ug ugaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUAGUU -CCUUU-GAU AA-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaga g-ACCAAC-- Ccuu-uucg- -gaggugcuu -UgguGauuC 301 Auaa-uaa-C UUU--UCGAA -UCGCA-UGG CUCCAC-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UCAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gcg=accggu -cuu=acac- -u----cu-- gu-guga-ga ac----uugu 781 gu--u-g-u- cuc-ug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACcc cugguaCUAU 961 UUU-GUUGGU UUGU-GCACC A-GAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCGGU-Ugg 1201 u----UUUUg c-cuccg--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga auga-UUUUu cauuGGu-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUUG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gguc=uggc ucc-UUUAUU gggg=c=cug 1921 acu-gugaaa aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS TFL535170 DEFINITION Thalassiosira fluviatilis 18S rRNA gene, clone p928. ACCESSION AJ535170 VERSION AJ535170.1 GI:41393022 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Thalassiosira weissflogii ORGANISM Thalassiosira weissflogii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 2 (bases 1 to 1763) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1763 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 468 a 347 c 456 g 492 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUG 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U cuu--ac-Ug ugAAAAC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -CCUUU-GAU AA-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAuACCCGAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAGG-UAGA g-ACCAAC-- Ccuc-UUCG- -gaggUGCUu -uggugAUuc 301 Auaa-uaa-C UUU--UCGAA -UCGCA-UGG CCCCGU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCgc GguaauUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuucu 721 ggc-a-gg-a gcg=accggu -cuc=acac- -c----cu-- gu-guga-ga ac----ucgu 781 gu--u-g-u- cuc-ug=gcc auccuugGg- gagaucc-ug uuu-g-gca- uucaguuguc 841 ggg-cag--g gga-uacc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGUCUU UG-GUACUAU 961 UUU-GUUGGU UugC-GCACC A-GAGAAA-U GAUU-AAUAG GGACAGUU-- GGGGCUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-ugu 1201 u----UUUUg a-cuccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -GUccac-ga augg-uuuuu cauugGu-ga 1561 -g--aucuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG UCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGGGAUUGU -GGuc=uggc ucc-UUCAUU gggg=c=cag 1921 acc-gugaga acuugucuga accuuaucaU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGu~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SME536450 DEFINITION Skeletonema menzelii 18S rRNA gene, strain P780. ACCESSION AJ536450 VERSION AJ536450.1 GI:40788123 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Skeletonema menzelii ORGANISM Skeletonema menzelii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 2 (bases 1 to 1779) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (10-JAN-2003) Medlin L.K., Dept. of Biological Oceanography, Alfred Wegener Institute, Am Handelshafen 12, Bremerhaven D-27570, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1779 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 484 a 343 c 446 g 504 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~GG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GRUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CU----UUAU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAgu-auuA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGUA-CGC UCUCGU-A-G CGAC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGAAGGGCA AGUCUGUUGC CARCAGCCCC GGUAAUUCCA 661 GCUCCAAUAC CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a aug=aguggc -cac=acac- -A----AU-- gu-gugu-gA gc----uua= 781 cu--c-g-u- -uu-c==gcc aUCCUuggu- gagaucc-ua uuu-g-gca- UUAAGUuguc 841 ggg-uag--g gga-uaac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-GAUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cUccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCCUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -uucgag-gu guug-auuuc aacagCu-ua 1561 -g--agcuUC UUAGAGGGAC AUCGGCU-CU ACAAGGUCGA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCAcUCAA 1681 CGAGUAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGAGAuugu -gguC=Uagc ucc-UUCAUU gggg=c=uUG 1921 acc-gcgaga aCCUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCU~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SME535168 DEFINITION Skeletonema menzelii 18S rRNA gene, strain CCMP 790. ACCESSION AJ535168 VERSION AJ535168.1 GI:41393020 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Skeletonema menzelii ORGANISM Skeletonema menzelii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1802 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 492 a 347 c 458 g 505 t ORIGIN 1 ~~~~~~~~~C CACAACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UAU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAgu-auuA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGC ACAUGU-U-G CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accggc -cac=acac- -A----CC-- gu-gugu-gA g-----uugU 781 g---c-a-u- -uc-ug=gcc aUCCUuggu- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uaac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cUccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAA -AUgGGU-ga auga-AUUUu cauuGac-uA 1561 -c--auuuUC UUAGAGGGAC gUUCGCU-cu acaaGGCGAA -GGAAGAUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCAcUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC cU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGAGAuugu -gguC=Uagc ucc-UUCAUU gggg=c=uUG 1921 acc-gcgaga aCCUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGUUCAAg~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF462060 DEFINITION Skeletonema pseudocostatum 18S ribosomal RNA gene, partial sequence. ACCESSION AF462060 VERSION AF462060.1 GI:18540482 KEYWORDS . SOURCE Skeletonema pseudocostatum ORGANISM Skeletonema pseudocostatum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 2 (bases 1 to 1789) AUTHORS Cordevant,C. and Lange,M. TITLE Direct Submission JOURNAL Submitted (21-DEC-2001) R&D Division, Institut Pasteur de Lille, 1 rue du Professeur Calmette, Lille 59019, France MEDLINE NONE FEATURES Location/Qualifiers source 1..1789 /organism="Skeletonema pseudocostatum" /db_xref="taxon:41457" /clone="SC" rRNA <1..>1789 /product="18S ribosomal RNA" BASE COUNT 488 a 339 c 453 g 509 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~CUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UaU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAgu-auuA A-accUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGa ccacgu-g-u CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=acugac -cac-aaac- -u----cu-- gu-uugu-gA g-----uugU 781 gu--c-a-u- -uc-ug=gcc aUCCUuggu- aagaucc-uu uuu-g-gca- UUAAGUuguc 841 ggg-aag--g gga-ugac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----uuuug a-cuccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CAAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -ACCCGC-Ga augg-CUUUu cauuGGc-gA 1561 -g--GUCUUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGUAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGAGAuuuu -gguc=uagc ucc-UUUAUU gggg=c=uug 1921 acc-gcgaga aCCUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SSP535165 DEFINITION Skeletonema sp. CCMP 1009 18S rRNA gene, strain CCMP 1009. ACCESSION AJ535165 VERSION AJ535165.1 GI:41393017 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Skeletonema sp. CCMP 1009 ORGANISM Skeletonema sp. CCMP 1009 Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1798 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 492 a 342 c 454 g 510 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UAU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAgu-auuA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGA CCACGU-G-U CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=acugac -cac=aaac- -U----CU-- gu-uugu-gA g-----uugU 781 gu--c-a-u- -uc-ug=gcc aUCCUuggu- aagaucc-uu uuu-g-gca- UUAAGUuguc 841 ggg-aag--g gga-ugac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cUccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -ACcCGC-ga augg-CUUUu cauuGgc-gA 1561 -g--gucuUC UUAGAGGGAC gUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCAcUCAA 1681 CGAGUAU--A UAACC-UUGG CCGAGA-GGC cU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGAGAuuuu -gguC=Uagc ucc-UUUAUU gggg=c=uUG 1921 acc-gcgaga aCCUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SSU535166 DEFINITION Skeletonema subsalsum 18S rRNA gene, strain CCAP 1077/8. ACCESSION AJ535166 VERSION AJ535166.1 GI:41393018 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Skeletonema subsalsum ORGANISM Skeletonema subsalsum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1798 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 490 a 346 c 455 g 507 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UAU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAgu-auuA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGU CCUCGU-G-A CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accggc -cac=acac- -U----CU-- gu-gugu-gA g-----cugC 781 gu--c-a-u- -uc-ug=gcc aUCCUuggu- gagaucc-ua uuu-g-gca- UUAAGUuguc 841 ggg-uag--g gga-uaac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cUccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -ACcCGC-ga augg-CUUUu cauuGgc-gA 1561 -g--gucuUC UUAGAGGGAC gUUCAUU-cu acaaGUUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCAcUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC cU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UUGAGAuuau -gguC=Uagc ucc-UUUAUU gggg=c=uUG 1921 acc-gugaga aCCUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GCAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SCRNAR18S DEFINITION S.costatum 18S rRNA gene. ACCESSION X85395 NID g1419238 VERSION X85395.1 GI:1419238 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Skeletonema costatum. ORGANISM Skeletonema costatum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1798 /organism="Skeletonema costatum" /strain="CCAP 1077/3" /db_xref="taxon:2843" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 490 a 344 c 458 g 506 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UAU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAGU-AUUA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGC ACAUGU-U-G CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=gccggc -cac=Acac- -A----CU-- gu-gugu-gA g-----uugU 781 gu--c-a-u- -uc-ug=gcc aUCCUuggu- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uaac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cuccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -ACccgc-ga auag-CUUUu uauuGgc-gA 1561 -g--gucuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAG UCGAGAuugu -ggau=uagc ucc-UUUAUU gggg=c=uua 1921 ucc-gcgaga aCCUCUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SKERG16SL DEFINITION Skeletonema costatum small subunit ribosomal RNA (16S-like rRNA) gene. ACCESSION M54988 NID g169893 VERSION NONE KEYWORDS protist; ribosomal RNA small subunit. SOURCE Skeletonema costatum pacifica (isolate Univ. of British Columbia culture # 18/C) DNA. ORGANISM Skeletonema costatum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Sceletonemataceae; Sceletonema. REFERENCE 1 (bases 1 to 1798) AUTHORS Medlin,L., Elwood,H.J., Stickel,S. and Sogin,M.L. TITLE The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding JOURNAL Gene 71, 491-499 (1988) MEDLINE 89138025 FEATURES NONE ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UAU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCYCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAGU-AUUA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGC ACAUGU-U-G CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accggc -cac=Acac- -A----CU-- gu-gcgu-gA g-----uugY 781 gu--c-a-u- -uc-ug=gcc aUCCUuggu- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uaac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGYAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cuccg--u CAGUACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -ACccgc-ga auag-CUUUu uauuGgc-gA 1561 -g--gucuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAG UCGAGAuugu -ggau=uagc ucc-UUUAUU gggg=c=uua 1921 ucc-gcgaga aCCUCUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPRNAR18S DEFINITION S.pseudocostatum (strain CCMP 1077/6) 18S rRNA gene. ACCESSION X85393 NID g1419262 VERSION NONE KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Sceletonemataceae; Sceletonema. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1798 /organism="Skeletonema pseudocostatum" /strain="CCAP 1077/6" /db_xref="taxon:41457" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 490 a 345 c 456 g 506 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCURC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UaU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAgu-auuA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGC ACAUGU-U-G CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accgac -cac=Acac- -A----CC-- gu-gugu-gA g-----uugu 781 gu--c-a-u- -uc-ug=gcc aUCCUuggu- gagaucc-ua uuu-g-gca- UUAAGUuguc 841 ggg-uag--g gga-uaac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----UUUUg a-cuccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -ACccgc-ga augg-CUUUu cauuGgc-gA 1561 -g--gucuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAG UCGAGAuugu -ggau=uagc ucc-UUUAUU gggg=c=uuu 1921 ucc-gcgaga aCCUCUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPRNA18SR DEFINITION S.pseudocostatum (strain CCMP 1077/7) 18S rRNA gene. ACCESSION X85394 NID g1419261 VERSION NONE KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Sceletonemataceae; Sceletonema. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1798 /organism="Skeletonema pseudocostatum" /strain="CCAP 1077/7" /db_xref="taxon:41457" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 490 a 345 c 457 g 506 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAGAU-A CUU----UaU CGAA-AC-U- GCGGACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AUAUGCAUC- AAAGCGGAAC U----CUCG- ----GGAACC 241 GCCGUGUUUA UUAgu-auuA A-ACCUUC-- Acuc-UUCG- -gaguUGAUU -UgguGaguC 301 Auaa-uaa-C CUU--UCGAA -UUGCA-UGC ACAUGU-U-G CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gug=accgac -cac=Acac- -A----CC-- gu-gugu-gA g-----uugu 781 gu--c-a-u- -uc-ug=gcc aUCCUuggu- gagaucc-ua uuu-g-gca- UUAAGUuguc 841 ggg-uag--g gga-uaac-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-AGUCUAU 961 UUU-GUUGGU UUGC-gAGUC A-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----uuuug a-cuccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -ACccgc-ga augg-CUUUu cauuGgc-gA 1561 -g--gucuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAG UCGAGAuugu -ggau=uagc ucc-UUUAUU gggg=c=uuu 1921 ucc-gcgaga aCCUCUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PSO535173 DEFINITION Planktoniella sol 18S rRNA gene, clone p354. ACCESSION AJ535173 VERSION AJ535173.1 GI:41393024 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Planktoniella sol ORGANISM Planktoniella sol Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Coscinodiscales; Coscinodiscaceae; Planktoniella. REFERENCE 2 (bases 1 to 1800) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1800 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 477 a 356 c 464 g 503 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAACUU-U UUU--ACUUU GAAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAGG-UAUA G-ACCAAC-- cCUC-UUCG- -GAGGUGCUU -UGGUGAUUC 301 AUAA-UAA-C UUU--UCGAA -UCGCA-UGG CUCCAU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-AU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCU 721 GGC-A-GG-A GCG=GCCGGU -Cac=gcac- -u----cu-- ----ugu-g- ac----uugc 781 gc--u-g-U- cuc-ug=gcc aUCCucggg- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c gUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGU UUGC-gUuAC G-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUC GGAGGU-Ugu 1201 u----UUUUg a-caccu--u cggcaccguA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAaaGAAA UUGACGG--a AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUccga-ua augg-UUUUu cauuguc-gA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-CU ACAAGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGACUgu -gguu=Uggc ucc-UUCAUU gggg=c=cUg 1921 acu-gcggga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS TERNAR18S DEFINITION T.eccentrica 18S rRNA gene. ACCESSION X85396 NID g1419322 VERSION X85396.1 GI:1419322 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Thalassiosira eccentrica. ORGANISM Thalassiosira eccentrica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1802 /organism="Thalassiosira eccentrica" /db_xref="taxon:49261" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 480 a 351 c 461 g 508 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAACUC-U UUU--ACUUU GAAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAGG-UAUA G-ACCAAC-- cCUC-UUCG- -GAGGUGCUU -UGGUGAUUC 301 AUAA-UAA-C UUU--UCGAA -UCGCA-UGG CUCCAU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCU 721 GGC-A-GG-A GUG=ACCGGU -Cac=gcac- -u----cu-- gu-gs-u-g- ac----uugu 781 gu--u-g-U- cUC-UG=GCC AUCCUUGGG- GAGAUCC-UG UUU-G-GCA- UUAAGUUGUC 841 GGG-CAG--G GGA-UACC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGU UUGC-GUUAC G-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUC GGUGGUCUGU 1201 U----UUUUG A-CUCCA--U CGGcACCGuA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGu GGAAC--UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcuac-ua augg-UUUUu cauuggu-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-CU ACAAGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCG-GUUC 1801 -AUCAAACCG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAUUgk -gguu=Uggc ucc-UUCAUU gggg=c=cUg 1921 acc-gcgaga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS TPS535169 DEFINITION Thalassiosira pseudonana 18S rRNA gene, clone p11. ACCESSION AJ535169 VERSION AJ535169.1 GI:41393021 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Thalassiosira pseudonana ORGANISM Thalassiosira pseudonana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 2 (bases 1 to 1793) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1793 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 478 a 349 c 457 g 508 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~UGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUaacuc-u uuu--acuuu gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaua a-accauc-- Acuc-uucg- -gaguugaaa -uggugauuc 301 auaa-uaa-c uuu--ucGAA -UCGCA-CGg cucuau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gcg=gccggu -cac=gcac- -u----cu-- gu-gugu-ga ac----uugc 781 gc--u-g-u- cuc-ug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGU UUGC-gUUAC G-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----uuuug a-cuccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcuac-ua augg-UUUUu cauuGgu-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCS CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUCGA UUAUUGCAAU UUUUAAUCGU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAuugu -gguu=uggc ucc-UUCAUU gggg=c=cug 1921 acc-gcgaga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGUUGA ACCUGCAGAA GGAU~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS TSP535171 DEFINITION Thalassiosira sp. CCMP 1281 18S rRNA gene, strain CCMP 1281. ACCESSION AJ535171 VERSION AJ535171.1 GI:41393055 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Thalassiosira sp. CCMP 1281 ORGANISM Thalassiosira sp. CCMP 1281 Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 2 (bases 1 to 1769) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1769 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 471 a 344 c 452 g 502 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-C CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUaacuc-u uuu--acuuu gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaua a-accauc-- Acuc-uucg- -gaguugaaa -uggugauuc 301 auaa-uaa-c uuu--ucGAA -UCGCA-CGg cucuau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gcg=gccggu -cac=gcac- -u----cu-- gu-gugu-ga ac----uugc 781 gc--u-g-u- cuc-ug=gcc aUCCUuggg- gagaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGU UUGC-gUUAC G-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCAGGAUU GGCGGU-Ugu 1201 u----uuuug a-cuccg--u CAGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcuac-ua augg-UUUUu cauuGgu-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUCGA UUAUUGCAAU UUUUAAUCGU GAACGAGGAA UUCCUAGUAA UCGCA-GUUC 1801 -AUCAAACUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAuugu -gguu=uggc ucc-UUCAUU gggg=c=cug 1921 acc-gcgaga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGU~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF374481 DEFINITION Thalassiosira pseudonana 18S ribosomal RNA gene, partial sequence. ACCESSION AF374481 VERSION AF374481.2 GI:21729619 KEYWORDS . SOURCE Thalassiosira pseudonana ORGANISM Thalassiosira pseudonana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 3 (bases 1 to 1804) AUTHORS Armbrust,E.V. and Galindo,H.M. TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98195-7940, USA REMARK Sequence update by submitter COMMENT On Jul 11, 2002 this sequence version replaced gi:14210195. MEDLINE 21365169 PUBMED 11472926 FEATURES Location/Qualifiers source 1..1804 /organism="Thalassiosira pseudonana" /db_xref="taxon:35128" rRNA <1..>1804 /product="18S ribosomal RNA" BASE COUNT 482 a 358 c 468 g 496 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UACaacca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAgg-uaua g-accaac-- Cguc-uucgg -gacGugcuu -uggugauuc 301 auaa-uaa-c uua--ucGGA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-g-gg-a gcg=accggu -cuc=acac- -u----ca-- gu-gcga-ga ac----ucgu 781 gu--u-g-u- cuc-ug=gcc aUCCUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-GGgUAA-U GAUU-AAAAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AGGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCGGU-Ugu 1201 u----uuuug a-cuccg--c CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGAGAuugu -ggcc=uggu ucc-UUUAUU ggga=u=uug 1921 gcu-acgaga aCUUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS TRRNAR18S DEFINITION T.rotula 18S rRNA gene. ACCESSION X85397 NID g1419339 VERSION X85397.1 GI:1419339 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Thalassiosira rotula. ORGANISM Thalassiosira rotula Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1802 /organism="Thalassiosira rotula" /strain="CCAP 1085/4" /db_xref="taxon:49265" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 479 a 352 c 460 g 509 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAACUC-U UUU--ACUUU GAAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGAAGG 241 GUAGUAUUUA UUAGG-UauA G-accaaC-- Ccuc-UUCG- -gaggUGCUu -ugguGauUc 301 auaa-uaa-C UUU--UCGAA -UCGCA-UGG CUCCAU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGYCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 agc-a-gg-a gug=accggu -cac=gcac- -u----cu-- g==g=au-gc ac----uugu 781 gu--u-g-u- cuc-ug=gcc aUCCuuggg- gagaucc-ug uuu-g-gca- UUAAGUuruc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU CG-GAACUAU 961 UUU-GUUGGU UUGC-gUuAC G-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUCCGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUC GGAGGU-Ugu 1201 u----UUUUg a-cUccu--u CGGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AACGGUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAAC--UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGu 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcUAC-Ua aucg-UUUUu gauugguUAa 1561 -g--agcuUC UUAGAGGGAC gUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUUG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCAcUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCG-GUUC 1801 -AUCAAACCG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGAC UCGGGAuugu -ggCu=Uggc ucc-UUCAUU gggg=c=cUg 1921 Acc-gcgaga aCUUGUCCGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CME535172 DEFINITION Cyclotella meneghiniana 18S rRNA gene, clone p567. ACCESSION AJ535172 VERSION AJ535172.1 GI:41393023 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Cyclotella meneghiniana ORGANISM Cyclotella meneghiniana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1790) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1790 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 477 a 352 c 463 g 498 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~UGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-accaac-- Accc-cucg- -ggguugcuu -uggugauuc 301 auaa-uaa-c uaa--ucGGA -UCGCA-UGg cuccac-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc-a-gg-a gcg=ucuggu -cuc=acac- -u----cu-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-aa augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -ggcu=uggu ucc-UUCAUU ggga=u=cug 1921 gcc-gugaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GG~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496206 DEFINITION Cyclotella meneghiniana strain G18W41 18S ribosomal RNA gene, partial sequence. ACCESSION AY496206 VERSION AY496206.1 GI:40557150 KEYWORDS . SOURCE Cyclotella meneghiniana ORGANISM Cyclotella meneghiniana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 472 a 352 c 458 g 495 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- aCCC-CUCG- -GGGUUGCUU -UGGUgauuc 301 auaa-uaa-c uaa--ucGGA -UCGCA-UGg cuccac-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=ucuggu -cuc=acac- -u----cu-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -ggcu=uggu ucc-UUCAUU ggga=u=cug 1921 gcc-gugaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496207 DEFINITION Cyclotella meneghiniana strain G188D 18S ribosomal RNA gene, partial sequence. ACCESSION AY496207 VERSION AY496207.1 GI:40557151 KEYWORDS . SOURCE Cyclotella meneghiniana ORGANISM Cyclotella meneghiniana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 472 a 353 c 458 g 494 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- aCCC-CUCG- -GGGUUGCUU -UGGUgauuc 301 auaa-uaa-c uaa--ucGGA -UCGCA-UGg cuccac-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=ucuggu -cuc=acac- -u----cu-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -ggcu=uggu ucc-UUCAUU ggga=u=cug 1921 gcc-gcgaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496210 DEFINITION Cyclotella meneghiniana strain G17W3 18S ribosomal RNA gene, partial sequence. ACCESSION AY496210 VERSION AY496210.1 GI:40557154 KEYWORDS . SOURCE Cyclotella meneghiniana ORGANISM Cyclotella meneghiniana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 471 a 349 c 458 g 499 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- aCCC-UUCG- -GGGUUGCUU -UGGUgauuc 301 auaa-uaa-c uua--ucGGA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=ucuggu -cuc=acac- -u----cu-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -ggcu=uggu ucc-UUCAUU ggga=u=cua 1921 gcu-gugaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496211 DEFINITION Cyclotella meneghiniana strain G8W7 18S ribosomal RNA gene, partial sequence. ACCESSION AY496211 VERSION AY496211.1 GI:40557155 KEYWORDS . SOURCE Cyclotella meneghiniana ORGANISM Cyclotella meneghiniana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 471 a 349 c 457 g 500 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- aCCC-UUCG- -GGGUUGCUU -UGGUgauuc 301 auaa-uaa-c uua--ucGGA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=ucuggu -cuc=acac- -u----cu-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -ggcu=uggu ucc-UUCAUU ggga=u=cua 1921 gcu-gugaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGUUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496212 DEFINITION Cyclotella meneghiniana strain G8W4 18S ribosomal RNA gene, partial sequence. ACCESSION AY496212 VERSION AY496212.1 GI:40557156 KEYWORDS . SOURCE Cyclotella meneghiniana ORGANISM Cyclotella meneghiniana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 472 a 353 c 458 g 494 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- aCCC-CUCG- -GGGUUGCUU -UGGUgauuc 301 auaa-uaa-c uaa--ucGGA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=uccggu -cuc=gcac- -u----cu-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -agcu=uggu ucc-UUCAUU ggga=u=cug 1921 gcc-gcgaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496213 DEFINITION Cyclotella meneghiniana strain G17W8 18S ribosomal RNA gene, partial sequence. ACCESSION AY496213 VERSION AY496213.1 GI:40557157 KEYWORDS . SOURCE Cyclotella meneghiniana ORGANISM Cyclotella meneghiniana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 472 a 352 c 458 g 495 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- aCCC-CUCG- -GGGUUGCUU -UGGUgauuc 301 auaa-uaa-c uaa--ucGGA -UCGCA-UGg cuccau-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=uccggu -cuu=gcac- -u----cu-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAAUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -agcu=uggu ucc-UUCAUU ggga=u=cug 1921 gcc-gcgaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496208 DEFINITION Cyclotella cf. scaldensis strain 18W53 18S ribosomal RNA gene, partial sequence. ACCESSION AY496208 VERSION AY496208.1 GI:40557152 KEYWORDS . SOURCE Cyclotella cf. scaldensis G18W53 ORGANISM Cyclotella cf. scaldensis G18W53 Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 471 a 352 c 460 g 494 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- uCCC-UUCG- -GGGAUGCUU -UGGUgauuc 301 auaa-uaa-c uaa--ucGGA -UCGCA-UGg cuccac-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=uccggu -cuc=acac- -u----ca-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -ggcu=uggu ucc-UUCAUU ggga=u=cug 1921 gcu-gcgaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY496209 DEFINITION Cyclotella cf. scaldensis strain G1W11 18S ribosomal RNA gene, partial sequence. ACCESSION AY496209 VERSION AY496209.1 GI:40557153 KEYWORDS . SOURCE Cyclotella cf. scaldensis G1W11 ORGANISM Cyclotella cf. scaldensis G1W11 Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Cyclotella. REFERENCE 2 (bases 1 to 1777) AUTHORS Beszteri,B., Acs,E. and Medlin,L. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) Alfred Wegener Institute For Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 471 a 352 c 460 g 494 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAcca-u uau--ac-ag gaaa-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUUGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UCU-- ----GGAAGG 241 GUAGUAUUUA UUAgg-uaua g-ACCAAC-- uCCC-UUCG- -GGGAUGCUU -UGGUgauuc 301 auaa-uaa-c uaa--ucGGA -UCGCA-UGg cuccac-g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGUUU UGGUUGGGAG UGUAU-UGGA CUCCCAAGAC UUUGACGGGU 421 AACGAAUUGU UAGGGCAAGA UUUCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU ACUG-AAACA GUGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggc=a-gg-a gcg=uccggu -cuc=acac- -u----ca-- gu-gcgg-ga ac----uug- 781 ga==u-g-u- cuc-ug=gcc aUCuUuggg- gauaucc-ug uuu-g-gca- UUAAGUuguc 841 ggg-cag--g gga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC U-GGgUAA-U GAUU-AAUAG AGACAGGC-- GGGGCUAUU- 1021 CGUAUUGCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCAGU-Ugu 1201 u----uuuug a-cucug--u CAGCACCGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCCGCCU GCU-AAAUAG -UUcugc-ga augg-UUUUu cauuGgc-aA 1561 -g--agcuUC UUAGAGGGAC GUUCAUU-cu acaaGAUGAA -GGAAGAUGG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA UCGCA-GAUC 1801 -AUCAAUCUG CAGUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAGGAG UCGGGAuugu -ggcu=uggu ucc-UUCAUU ggga=u=cug 1921 gcu-gcgaga aCCUCUCCAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CRNAR18S DEFINITION Chaetoceros sp. 18S rRNA gene. ACCESSION X85390 NID g1418671 VERSION X85390.1 GI:1418671 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Chaetoceros sp. ORGANISM Chaetoceros sp. Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 2 (bases 1 to 1791) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1791 /organism="Chaetoceros sp." /db_xref="taxon:49240" rRNA 1..1791 /product="18S ribosomal RNA" BASE COUNT 484 a 339 c 454 g 512 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GGU AG-UCCCU-- --UA-CUAUU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACUCGAC U----UUU-- ----GGAAGA 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAC-- Ucgu-UUCG- -GCGAUGUAA -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGAA -UCGCA-UGG CUUCU--G-C CGGC-GAUGG ACCAUUCAAg 361 uu-Ucug-CC CUAUCAGCUU U-GACGGUAG UGUAU-UGGA CUACCGUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCC-UU UCGGG-UCUG GCUUUUGGAA UG-AG-AGAA UU-UUAGA-A 601 UCCACA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCc 721 ggc-g-ug-a ggg=aucggu -cug=acu-- -u----uu-- -a-guga-gu ac----uug- 781 au--c-c-U- cuc-au=gcc gUCCUugaa- u-ggugc-au ccu-g-gca- UUAAGUuguc 841 ggg-gug-Au aGc-cguu-c aUC-GUUUAC UGUGAGAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UR CCGUURAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU AG-GUACUAU 961 UUU-GUUGGU UUGA-gaaCC a-AGgUAA-U GAUC-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUA GAUUUCCGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUAUACCAUA AACUAUGCCG ACUCAGGAUG GGCGGG-Ugc 1201 a----UUUUU G-CCUCG--U CUGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUu GACAGAUUGA -G-AG-C-UC UUUCUUCAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCAGCCU gCU-AAaUAA -UcaCAC-Ua auga-CUUUu cauuggu-gA 1561 -UU-GGUUUC UUAGAGGGAC AUGUAGU--a uaaaACUACA -GGAAGAUUG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGA ACCGCACGCG UGUUACACUG AUGCAUUCAA 1681 CGAGCUU--- CA-CC-UUGG CCGAGA-GG- CU-GGGAAAU CUUUUUAGCA UGCAUCGUGA 1741 UAGGGAUUGA UUAUUGCAAU UAUUAAUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAAGAC UCGGGAuugu -gg-c=aaUc uAc-UUUAUU gCag=U=uug 1921 Ucc-acgaga aCUUGUCUAA ACCUUAUCAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CDRNAR18S DEFINITION C.didymus 18S rRNA gene. ACCESSION X85392 NID g1418414 VERSION X85392.1 GI:1418414 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Chaetoceros didymus. ORGANISM Chaetoceros didymus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 2 (bases 1 to 1790) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1790 /organism="Chaetoceros didymus" /db_xref="taxon:49238" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 494 a 340 c 444 g 511 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UACAAAUC-U UUU--ac-UU UAAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUUUAACC -AAACC-GAG AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- UAUACCGAAC U----UUU-- ----GGAACG 241 GUAGUAUUUA UUAGA-UAGA A-ACCAAC-- cAGC-UUU-- -GCUGUAUUU -UGGUGAUUC 301 AUAA-UAA-C UUA--GCGAA -UCGCA-UGC CUUU---G-G CGGC-GAUGG CUCGGUCGGA 361 AU-Ucug-CC CUAUCAGCUU UGGAAGGUAG UGUAU-UGGA CUACCUUGGC UUUAACGGGU 421 AACGGGG-AU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCAU-UU AUUUG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCURGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-A-gg-a ggg=acCggu -cag=auc-- -a----uu-- -g-aucu-gU ac----uugu 781 gu--c-c-U- cuc-cc=gcc aUCUUuggg- uggaucc-uu ucu-g-gca- UUAAGUuguc 841 ggg-aag--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GAC-UUA-CG UCAUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGGCUU CA-GUACUAU 961 UUU-GUUGGU UUGC-gUaCc G-AGgUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU AUUCAGUGGU GAAAUACUUA GAUCUACGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUCAGAUA CCAUCGUAGU CUAUACCAUA AACUAUGCCG ACUCAGGAUG GGCAAG-auG 1201 C----UUUUG G-UCUUG--U CUGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGCUC-G-C AAGGGUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAAC--UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCAGGCU gCA-AAaUAG -GaaCAu-Cu auaA--UU-U uauagUu-gA 1561 -g--UCUUUC UUUGAGCGAC AUGUAGU-Uu cuaaGCUACA -GGAAGAAUG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGA ACCGCACGCG UGUUACACUG ACGUAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAACG UACGUCGUGA 1741 UAGGGAUCGA UUCUUGCAAU UAUUAAUCGU GAAGCAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAACGUUC CGGUGAAAUC UUGGGAgugu -gguU=UgUU ucc-UUUAUU ggaU=c=UU- 1921 acc-guauAa aCAUGCUUAA ACCUUAACGU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY229896 DEFINITION Chaetoceros debilis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION AY229896 VERSION AY229896.1 GI:32395721 KEYWORDS . SOURCE Chaetoceros debilis ORGANISM Chaetoceros debilis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 2 (bases 1 to 3171) AUTHORS Gou,W.L., Sun,J., He,S.Y., Li,R.X. and Yu,Z.G. TITLE Direct Submission JOURNAL Submitted (03-FEB-2003) Marine Biology, Yushan Rd., Qingdao, Shandong 266003, China MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..1739 /product="18S ribosomal RNA" BASE COUNT 459 a 339 c 462 g 479 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~A -UGU-GUAAG UUUACAUA-C UGA--ac-uU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GGU AG-UCUCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACCCGAC U----UUU-- ----GGAAGG 241 GUGGUAUUUA UUAGA-UUGA A-Accaac-- Ucgc-uucg- -gcgguguaa -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGAA -UCGCA-UGG CUUCG--G-C UGGC-GAUGG ACCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU U-GACGGUAG UGUAU-UGGA CUACCGUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGC-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-g-cg-a cgg=aucggu -ccg=acc-- -u----uu-- -g-gugg-gu ac----ucg- 781 au-gu-u-g- -uc-gc=gcc auccuugag- u-gguuc-gu ccu-g-gca- uuaaguuguc 841 ggggcgg--c agc-cgcu-c auc-GUUUAC UGUGAGAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UACUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGa-gaacc a-AGGUAA-U GAUC-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUA GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUAUACCAUA AACUAUGCCG ACUCAGGAUG GGCGGG-Ugc 1201 c---acucug g-ccucg--u CUGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGGAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCAGCCU GCU-AAAUAA -UCACgc-ga auga-cuuuu cauugGC-Ga 1561 -u--GGUUUC UUAGAGGGAC AUGUAGU--a caaaGCUACA -GGAAGAUUG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGA ACCGCACGCG UGUUACACUG ACGCAUUCAA 1681 CGAGCAU--A -AACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUGUUAACG UGCGUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAAGUC UCGGGAuUGU -GG-C=AAUC UCC-UUUACU GGAG=U=UUG 1921 UCU-GCGAGA ACUUGCCUAA ACCUUAUCAC UUAGAGGAAG GUGAAGUCCU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GGAUCAU~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY229897 DEFINITION Chaetoceros gracilis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION AY229897 VERSION AY229897.1 GI:32395726 KEYWORDS . SOURCE Chaetoceros gracilis ORGANISM Chaetoceros gracilis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 2 (bases 1 to 2868) AUTHORS Gou,W.L., Sun,J., Mi,T.Z., Li,R.X. and Yu,Z.G. TITLE Direct Submission JOURNAL Submitted (04-FEB-2003) Marine Biology, Yushan Rd., Qingdao, Shandong 266003, China MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..1739 /product="18S ribosomal RNA" BASE COUNT 459 a 338 c 463 g 479 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~A -UGU-GUAAG UUUACAUA-C UGA--ac-uU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GGU AG-UCUCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACCCGAC U----UUU-- ----GGAAGG 241 GUGGUAUUUA UUAGA-UUGA A-ACCAAC-- uCGC-UUCG- -GCGGUGUAA -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGAA -UCGCA-UGG CUUCG--G-C UGGC-GAUGG ACCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU U-GACGGUAG UGUAU-UGGA CUACCGUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGC-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=g-cg-a cgg=aucggu -ccg=acc-- -u----uu-- -g-gugg-gu ac----ucg- 781 au-gu-u-g- -uc-gc=gcc auccuugag- u-gguuc-gu ccu-g-gca- uuaaguuguc 841 ggggcgg--c agc-cgcu-c auc-GUUUAC UGUGAGAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UACUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGa-gaacc a-AGGUAA-U GAUC-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUA GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUAUACCAUA AACUAUGCCG ACUCAGGAUG GGCGGG-Ugc 1201 c---acucug g-ccucg--u CUGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGGAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCAGCCU GCU-AAAUAa -ucacgc-ga auga-cuuuu cauuggc-ga 1561 -u--GGUUUC UUAGAGGGAC AUGUAGU--a caaaGCUACA -GGAAGAUUG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGA ACCGCACGCG UGUUACACUG ACGCAUUCAA 1681 CGAGCAU--A -AACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUGUUAACG UGCGUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAAGUC UCGGGAuugu -gg-c=aauc ucc-uuuacu ggag=u=uug 1921 ucu-gcgaga aCUUGCCUAA ACCUUAUCAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GGAUCAU~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY229895 DEFINITION Chaetoceros curvisetus 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION AY229895 VERSION AY229895.1 GI:32395720 KEYWORDS . SOURCE Chaetoceros curvisetus ORGANISM Chaetoceros curvisetus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 2 (bases 1 to 3174) AUTHORS Gou,W.L., Sun,J., Zhen,Y., Li,R.X. and Yu,Z.G. TITLE Direct Submission JOURNAL Submitted (03-FEB-2003) Marine Biology, Yushan Rd., Qingdao, Shandong 266003, China MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..1742 /product="18S ribosomal RNA" BASE COUNT 459 a 340 c 465 g 478 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~A -UGU-GUAAG UUUACAUA-C UGA--ac-uU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GGU AG-UCUCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACCCGAC U----UUU-- ----GGAAGG 241 GUGGUAUUUA UUAGA-UUGA A-Accaac-- Ucgc-uucg- -gcgguguaa -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGAA -UCGCA-UGG CUUCG--G-C GGGC-GAUGG ACCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU U-GACGGUAG UGUAU-UGGA CUACCGUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGC-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-g-cg-a cgg=aucggu -ccg=acc-- -u----uu-- -g-gugg-gu ac----ucg- 781 au-gu-u-g- -uc-gc=gcc auccuugag- u-gguuc-gu ccu-g-gca- uuaaguuguc 841 ggggcgg--c agc-cgcu-c auc-GUUUAC UGUGAGAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UACUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGa-gaacc a-AGGUAA-U GAUC-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUA GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUAUACCAUA AACUAUGCCG ACUCAGGAUG GGCGGG-Ugc 1201 c---acucug g-ccucg--u CUGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGGGGAGUA -UGGUCCG-C AAGGCUGAAA CUUAAAGGAA UUGACGG--A AGGGCACCCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCAGCCU GCU-AAAUAA -UCACGC-Ga auga-CUUUu cauuGgC-GA 1561 -U--GGUUUC UUAGAGGGAC AUGUAGU--a caaaGCUACA -GGAAGAUUG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGA ACCGCACGCG UGUUACACUG ACGCAUUCAA 1681 CGAGCAU--A -AACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUGUUAACG UGCGUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAAGUC UCGGGAuugu -gg-c=aauc ucc-uuuacu ggag=u=uug 1921 ucu-gcgaga aCUUGCCUAA ACCUUAUCAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GGAUCAU~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525669 DEFINITION Biddulphiopsis titiana small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525669 VERSION NONE KEYWORDS . SOURCE Biddulphiopsis titiana ORGANISM Biddulphiopsis titiana Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphyaceae; Biddulphiopsis. REFERENCE 2 (bases 1 to 1752) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1752 /product="small subunit ribosomal RNA" BASE COUNT 475 a 340 c 450 g 487 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUa-u uuu--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC U----UUAu- ----GGACGG 241 GUAguauuua uuaga-uaga a-ACCAAC-- cCUC-UUAG- -GAGGUACUU -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGAA -UUGCA-UGg cucuau-g-c CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CAAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-g-gg-a gug=aucggu -ccg=acac- -u----ac-- gu-gugg-gu ac----uugu 781 au--c-a-u- cuc-cg=gcc aUCCUuggg- gagagcu-ug ucu-g-gca- UUAGGUuguc 841 ggg-cag--g gga-uccc-c aUC-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA AAUAGGACCG CG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-UGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCGGU-Cgu 1201 u----guauG A-CUCCG--U CAGCACCGUA UGUGAAAACA --AAGUC-AU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAAAG A-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUUU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UCccgu-ga auga-AUCUu cauuGac-gA 1561 -g--GGCUUC UUAGAGGGAC GUGCAUU--u auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC---G GCCGCACGCG CGcUACACUG AUGCAuUCAA 1681 CGAGCUU--A UAACC-UUGA CCGAGA-GGU CU-GGGCAAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -ggcc=uggc ucc-UUCAUU gggg=c=uug 1921 gcu-gugaaa aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525667 DEFINITION Lampriscus kittonii small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525667 VERSION NONE KEYWORDS . SOURCE Lampriscus kittonii ORGANISM Lampriscus kittonii Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Triceratiaceae; Lampriscus. REFERENCE 2 (bases 1 to 1752) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1752 /product="small subunit ribosomal RNA" BASE COUNT 474 a 332 c 458 g 488 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG UAUAAaua-u uau--au-gu uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU Ag--uuuu-- --uu-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCUGAC C----UCUG- ----GAACGG 241 GUAGCAUUUA UUAgg-uuga a-accaacc- Ccuc-CUUG- -GAGGUAUUU -UGGUGAUUC 301 AUAA-UAA-C UUU--GCAAA -UUGCa-cgg cucaau-g-c CGGC-AAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAG-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUAGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAAUGAUGCU -GGGCCU-CU ACAGG-UCUG ACAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCACCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggu-g-gg-a gcg=agcggc -ccg=gcac- -u----uu-- gu-gugg-gu ac----uugu 781 ag--c-g-u- cug-cc=gcc aUCCUuggu- a-agagc-ug ucu-g-gca- uuagGUuguc 841 ggg-cag--a gga-uugc-c aUC-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-AUU-UG CCAUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACUG CG-GUACUAU 961 UGU-GUUGGU UUGU-gUGCC G-UAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCAGU-Ugu 1201 U---uuuuaa u-caCUG--U CAGCACCGUa UGUGAAAACA --AAGUC-AU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUCACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -gccggc-aa auga--uuuu cauuggc-a- 1561 -a--AGCUUC UUAGAGGGAC GUUCAUc--u acuaGAUGAA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGCAU--A GAACC-UUGG CCGAGA-GGC CC-GGGUAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UGUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAUUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGAGC UCGGGAuugu -gauc=uggu ucc-UUCACU ggga=c=uug 1921 agc-gcgaga aCUUGUUCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS EARNAR18S DEFINITION E.antartica 18S rRNA gene. ACCESSION X85389 NID g1418693 VERSION X85389.1 GI:1418693 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Eucampia antarctica. ORGANISM Eucampia antarctica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Hemiaulaceae; Eucampia. REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1798 /organism="Eucampia antarctica" /strain="3/a" /db_xref="taxon:49252" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 487 a 341 c 457 g 513 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUAUu uuu--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AAUUCCCU-- --UA-CUACU CGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACGUGCUAA- CAUAUCCAAC C----UUUU- ----GGAAGG 241 AUAGUAUAUA UUAGA-UUGA A-ACCAAC-- CugU-UUCG- -GcagUGUCA -UGGUGAUUC 301 AUAA-UAU-C UUU--GCGAA -UCGCA-UAG CUUCAU-G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU U-GAUGGUAA GGUAU-UGGC UUACCAUuGC UAUAACGGGU 421 AACGGAGGAU CAGGGUUUGA UUCCGGAGAG GGGGCUUGAG AAUUGGCCAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-AU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC G-UAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCu 721 ggu-G-gg-a gug=uacagu -ccg=acac- -U----GA-- gu-guug-gU Uc----uug= 781 ua--u-g-u- cuc-uG=gcc aUCCUugga- gUgaauc-ug ucu-g-gca- UUCAGUuguu 841 ggg-cag--a gua-Ucuc-c aUC-GUUUAC UGUGAGGAAA GGAAAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUC -UUUUAGCAU GGAAUAAUAA GAUAGGAUCU UG-AUACUAU 961 UUU-GUUGGU UUGC-gUgUC G-AGaUAA-U GAUG-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU AGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACAAACUA AU-GCGAAAG 1081 CAUCUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-GUGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUACACCAUA AACCAUGCCG ACUCAGGGUU GACCGG-cgu 1201 u---aUCAuG A-CCUGG--U CAGAACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAAAA G-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU UUUU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCACAGCCU GCU-AAAUAG -UCCGGa--u ugua--CUUu acag-uc-uA 1561 -g--GGCUUC UUAGAGGGAC ACCGAGU-ua ccaaGCUCGG -GGAAGUUUG UGGCGAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -gguu=Uagu Ucc-UUUAUU ggUa=c=uUg 1921 acu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CRRNAR18S DEFINITION C.rostratus 18S rRNA gene. ACCESSION X85391 NID g1418672 VERSION X85391.1 GI:1418672 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Chaetoceros rostratus. ORGANISM Chaetoceros rostratus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 2 (bases 1 to 1799) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1799 /organism="Chaetoceros rostratus" /db_xref="taxon:49239" rRNA 1..1799 /product="18S ribosomal RNA" BASE COUNT 489 a 338 c 455 g 513 t 4 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUGAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--ac-UU UGAA-AC-U- GCARAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACu 181 GUAGUAAUUC UAGaGCUAAU ACAUGCAUC- AAUACCCAAC U----UUAU- ----GGAAGG 241 GUAGUAUUUA UUAGA-UAGA A-ACCAAC-- Cugc-UUCG- -gcggUGUCU -UGGUGACUC 301 AUAA-UAA-C UUC--GCGAA -UCGCA-CGG UUUU---G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGGGGAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UC UAAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC G-UAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 gru-G-gg-a gsg=aucggu -ccuugcau- -U----CU-- uu-guag-ga ac----uugu 781 ru--c-c-u- cuc-cG=gcc aUCCUuggg- uggaucu-ug ucu-g-gca- UUAAGUuguc 841 agg-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCAUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGGCCC UG-GUACUAU 961 UUU-GUUGGU UUGC-gUaCC G-aGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCAGU AUUCAGUGGU GAAAUACUUA GACCUACGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUCAGAUA CCGUCGUAGU CUAUACCAUA AACUAUACCG ACUCAGGAUG GGAGGG-gCG 1201 U--GUUUUUG C-CCUCU--U CUGCACUGUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAAC--UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCUCAGCCU gCU-AAaUAA -UggUGU-Ua auga-AUCUu cauuggc-aG 1561 -A--CAUUUC UUAGAGGGAC AUGUAGU--a uaaaACUACA -GGAAGAUUG AGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGA ACCGCACGCG UGUUACACUG AUGCAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAACG UGCGUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGAGAuugu -gguu=gggu ucc-UUUAUU ggag=c=cug 1921 acu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PSP535167 DEFINITION Chaetoceros sp. p442 18S rRNA gene, clone p442. ACCESSION AJ535167 VERSION AJ535167.1 GI:41393019 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Chaetoceros sp. p442 ORGANISM Chaetoceros sp. p442 Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 2 (bases 1 to 1799) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1799 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 492 a 339 c 455 g 513 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGA-CUAAG UAUAAAAC-U UUU--AC-UU UGAA-AC-U- GCAAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU -g-ucccagu ccuaucuacu uug--uaau- 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC U----UUUU- ----GGAAGG 241 GUAGUAUUUA UUAGA-UAGA A-ACCAAC-- Cuac-uucg- -GUGGUGUUC -UGGUGACUC 301 AUAA-UAA-C UUU--GCGAA -UUGCa-cgg cuuug--u-c uggc-aaugg aUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGgauGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGGGGAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAGA 541 UAACAAUGCC -GGGCCU-UC AAAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuucu 721 ggu-g-gg-a ggg=aucggu -cca=gcac- -u----ca-- gu-guug-ga ac----uugu 781 au--c-c-u- cuc-cg=gcc auccuuggg- uggaucu-ug ucu-g-gca- uuaaguuguc 841 agu-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCAUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGGCCC UG-GUGCUAU 961 UUU-GUUGGU UUGc-guacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCAGU AUUCAGUGGU GAAAUACUUA GACCUACGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUCAGAUA CCGUCGUAGU CUAUACCAUA AACUAUACCA ACUCAGGAUG GGAggg--gu 1201 g----uuuuU G-CCUCU--U CUGCACUGUa uGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCUCAGCCU GCU-AAAUAa -uggugc-ua auga-aucuu cauuggc-ag 1561 -a--CAUuUC UUAGAGGGAC AUGUAGU--a uuaaACUACA -GGAAGAUUG AGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGA ACCGCACGCG UGUUACACUG AUGCAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAACG UGCGUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCG UUGGGAuugu -gguu=gggu ucc-uuuauu ggag=c=cug 1921 acc-gugaga aCUUCUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AJ535188 DEFINITION Pleurosira cf. laevis 18S rRNA gene, clone p203. ACCESSION AJ535188 VERSION AJ535188.1 GI:41391986 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Pleurosira cf. laevis ORGANISM Pleurosira cf. laevis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Triceratiaceae; Pleurosira. REFERENCE 2 (bases 1 to 1803) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1803 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 473 a 361 c 473 g 496 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUAcu ucu--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC CG---UUCG- ---CGGAAGG 241 GUAgcuUUUA UUAGA-Uaga a-gccaa--- Ccac-UUCG- -GUGGUUCUU -UGGUGAUUC 301 ACAA-UAA-C CUU--GCGAA -UCGCA-UGG Ccucgu-g-c cggc-gauGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUAGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaaugucu 721 ggu-g-gg-a gcg=augggu -ucu=gugc- -c----ua-- gc-gcag-au ac----uucg 781 au--u-g-c- cuc-cu=gcc auccucggg- gagagcu-ca ccu-g-gca- uuagguuguc 841 ggg-uaa--g gga-uccu-u guc-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGCUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GugcUAU 961 UUU-GUUGGU UUGu-guguc a-AGGUAA-U GGUU-AACAG GAACAGUC-- GGGGGUAUU- 1021 CAUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGAUGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UGGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUCAACUAUA AACUAUGCCG ACUCGGGAUU GGCGGg-ugu 1201 u--uuuaauG A-CCCUG--U CAGCACCGUa uGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cuccgu-ug augaguucuu cauuggc-ga 1561 -g--AgcuUC UUAGAGGGAC AUCGUC---u acua-GACGA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAAUG UGCAUCGUGA 1741 UAGGGAUCGA UCAUUGCAAU UAUUGAUCGU GAACGAGGAA UUCCUAGUAA AUAUG-GGUC 1801 -AUCAUCCCG UGUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGAUC CGGUGAGGCC UCGGGAuugu -ggcc=ccug cua-uucacu uagc=g=ggg 1921 gcu-gcaaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CBRNAR18S DEFINITION C.belgica 18S rRNA gene. ACCESSION X85387 NID g1418410 VERSION NONE KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Cymatosira belgica. ORGANISM Cymatosira belgica Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae; Centrales; Cymatosiraceae; Cymatosira. REFERENCE 2 (bases 1 to 2317) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG MEDLINE NONE FEATURES NONE ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U uuu--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCAAC UG---UUCG- ---CGGACGG 241 GUAGUAUUUA UUAGA-UAGA a-ACCAAC-- Ccuc-UUCG- -GAGGCGUCC -AGGUGAUUC 301 AUGA-UAA-C UCU--GCGAA -UCGCA-UGG CCUUgu-G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA CUCCGGAGAG GGGGCCUGAG AGAUGGCCAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-gg-a gcg=accggu -ccg=acgc- -u----ua-- gc-gugg-gu ac----uugc 781 gu--c-g-U- cuc-cG=gcc aUCCUuggg- gagaGuu-ug ucu-g-gca- uuaaguuguc 841 ggg-cag--a gga-uccu-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-GUACUAU 961 UUU-GUUGGU UUGC-GCACC A-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGAUAUU- 1021 CGUAUUUCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGAA AGACGAACUA CU-GCGAAAG 1081 CRUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCGGA-cgu 1201 u---cuuauG A-CUUCG--U CAGCACCGuA UGUGAAAACA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG+GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UUccgu-Ga guga-UUUCu cacuGac-gA 1561 -g--AGCUUC UUAGAGGGAC AUGGGUU--A UAAAAAUCCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGCUU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGAAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAAGCc uCGGGAUUgu -gguU=uggc ugc-UUUAUU gugg=c=cgU 1921 acc-gcgaga aCUUGUCUAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525670 DEFINITION Pleurosira laevis small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525670 VERSION NONE KEYWORDS . SOURCE Pleurosira laevis ORGANISM Pleurosira laevis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Triceratiaceae; Pleurosira. REFERENCE 2 (bases 1 to 1757) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1757 /product="small subunit ribosomal RNA" BASE COUNT 460 a 351 c 460 g 486 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAauacu ucu--ac-uu uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC CG---UUCG- ---CGGAAGG 241 GUAGCUUUUA UUAga-uaga a-gccaa--- Ccac-UUCG- -GUGGUUCUU -UGGUgAUUC 301 ACAA-UAA-C CUU--GCGAA -UCGCA-UGG CCUCGU-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUAGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUGUCu 721 ggu-g-gg-a gcg=augggu -ucu=gugc- -c----ua-- gc-gcag-au ac----uucg 781 au--u-g-c- cuc-cu=gcc auccucggg- gagagcu-ca ccu-g-gca- uuAGGUuguc 841 ggg-uaa--g gga-uccu-u gUC-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGCUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUGCUAU 961 UUU-GUUGGU UUGU-GUGUC A-AGGUAA-U GGUU-AACAG GAACAGUC-- GGGGGUAUU- 1021 CAUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGAUGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UGGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUCAACUAUA AACUAUGCCG ACUCGGGAUU GGCGGG-Ugu 1201 u--uuuaauG A-CCCUG--U CAGCACCguA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -CUccgu-ug augaguucuu cauuggc-ga 1561 -g--AGCUUC UUAGAGGGAC AUCGUC---u acua-GACGA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAAUG UGCAUCGUGA 1741 UAGGGAUCGA UCAUUGCAAU UAUUGAUCGU GAACGAGGAA UUCCUAGUAA AUAUG-GGUC 1801 -AUCAUCCCG UGUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGAUC CGGUGAGGCC UCGGGAuugu -ggcc=ccug cua-uucacu uagc=g=ggg 1921 gcu-gcaaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS OS18SR DEFINITION O.sinensis 18S rRNA gene. ACCESSION Y10570 VERSION Y10570.1 GI:2832342 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Odontella sinensis. ORGANISM Odontella sinensis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; Eupodiscales; Eupodiscaceae; Odontella. REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (15-JAN-1997) L.K. Medlin, Alfred-Wegener-Insitute, Dept of Biological Oceanography, Am Handelshafen, 12, D 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1802 /organism="Odontella sinensis" /db_xref="taxon:2839" rRNA <1..>1802 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1802 /gene="18S rRNA" BASE COUNT 477 a 368 c 472 g 484 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U UAU--AC-AU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCUU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AACACCCAAC CG---UUG-- ---CGAAAGG 241 GUUGUAUUUA UUAGA-Uaga a-ACCAAC-- cCUC-UUCC- -GAGGUGCUC -UGGUGAUUC 301 AUAA-UAA-c uuu--gcGAA -UCGCA-UGC Ucuacg-g-c cggc-gauGC AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUAGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggacuucu 721 ggu-g-gg-a gca=aucggu accg=acg-- -c----uc-- -u-gygg-gu ac----uugu 781 au--u-g-u- cuc-cc=gcc aUCcuuggg- gagagcc-ug ucu-g-gca- uuagguuguc 841 ggg-cag--g gga-uccc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GGACUAU 961 UUU-GUUGGU UUGc-GCCCC G-UGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUGUGC UGUCAGAGGU GAAAUUCUUG GAUUAGCGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UGGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUCAACCAUA AACUAUGCCG ACUCGGGAUU GGCGGu-cgu 1201 u--acuaauG A-CUCCG--U CAGCACCGUa aGGGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccagu-ca augg-uuauu cauuggc-gu 1561 -g--ggcuUC UUAGAGGGAC GUCCAUC--u acuaGGUGGA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUAC-UGG GCCGCACGCA CGCUACACUG AUGCACUCAA 1681 CGAGCAU--A UAACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GGUC 1801 -AUCAACCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -ggcc=uggu agc-uuuauu ggua=c=cug 1921 gcc-gugaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF145226 DEFINITION Chaetoceros sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF145226 VERSION AF145226.1 GI:4960033 KEYWORDS . SOURCE Chaetoceros sp. ORGANISM Chaetoceros sp. Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 1 (bases 1 to 1782) AUTHORS Usup,G., Teen,L.P. and Pin,L.C. TITLE Direct Submission JOURNAL Submitted (23-APR-1999) Marine Science Department, Fakulti Sains Sumber Alam, Universiti Kebangsaan Malaysia, Bangi, Selangor 43600, Malaysia MEDLINE NONE FEATURES Location/Qualifiers source 1..1782 /organism="Chaetoceros sp." /db_xref="taxon:49240" /clone="CHMS01" rRNA <1..>1782 /product="18S ribosomal RNA" BASE COUNT 489 a 337 c 450 g 506 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-GUAAG U-UCAAUGAU UUG--AC-CA AAAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACUCGAC C----UUU-- ----GGAAGA 241 GUGGUAUUUA UUAGA-UUGA A-ACCAAC-- Ccgu-uucg- -GCGGUGUCC -UGGUGAUUC 301 AUAA-UAA-C UUU--UCGGA -UUGC----- -auu------ --GC-AACAU UUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU U-GACGGUAG UGUAU-UGGA CUACCGUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GUGCCC-UU UUGGG-UAUG GCUUUUGGAA UG-AG-AGAA AC-ACAGA-A 601 UCCACA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUUCAAUAG CGUAUAUUAA AGU-UGC-UG CAGUUA-AAA AGCUCGUAGU U-Gcauuucc 721 gag-g-ca-a ggg=auuagu -ccg=acc-- -u----uu-- -g-gugg-gu au----uua- 781 au--c-c-u- cuu-gc=cuc guccuugag- u-ggugc-uu cuu-g-gua- uuaaguuauc 841 gaggaga--u agc-cgcu-c auc-GUUUAC UGUGAGAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGa-gaacc a-AGGUAA-U GAUG-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCAGU UGUCAGAGGU GAAAUUCUUA GAUUUACGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-AUGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUAUACCAUA AACUAUGCCG ACUCAGGAUU GUCAGG-Ugu 1201 c----uuuuG A-CCUUG--G CAGCACUGUg uGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC GGGCUUAAUU UGACUCAACA -CGGGA-AAA CUUAUCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCAGCCU GCU-AAAUAc -uugcac-ga auga-cuuuu cauuggu-ga 1561 -c--agguUC UUAGAGGGAC AUGUAGU--a uaaaACUACA -GGAAGAUUG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGA ACCGCACGCG UGUUACACUG AUGCAUUCAA 1681 CGAGCUU--- UA-CC-UUGG CCGAGA-GGC CU-GGGAAAU CUUUUUAGCA UGCAUCGUGA 1741 UAGGGAUUGA UUAUUGCAAU UAUUAAUCAU GAACGAGGAA UUCCUAGUAA ACGCA-UUUC 1801 -AUCAAAAUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAAGUC UCGAGAuugu -gg-c=aauc ucc-uuuauu ggag=u=uug 1921 acu-gcgaga aCUUGCCUAA ACCUUAUCAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AB085832 DEFINITION Eunotia pectinalis gene for 18S ribosomal RNA, partial sequence. ACCESSION AB085832 VERSION AB085832.1 GI:21320866 KEYWORDS . SOURCE Eunotia pectinalis ORGANISM Eunotia pectinalis Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Eunotiophycidae; Eunotiales; Eunotiaceae; Eunotia. REFERENCE 2 (bases 1 to 1663) AUTHORS Mayama,S. TITLE Direct Submission JOURNAL Submitted (27-MAY-2002) Shigeki Mayama, Tokyo Gakugei University, Department of Biology; Nukuikita-machi 4-1-1, Koganei-shi, Tokyo 184-8501, Japan (E-mail:mayama@u-gakugei.ac.jp, Tel:81-42-329-7524, Fax:81-42-387-3992) MEDLINE NONE FEATURES Location/Qualifiers source 1..1663 /organism="Eunotia pectinalis" /strain="A-0047" /db_xref="taxon:196638" /country="Japan:Hokkaido, Kushiro wetland, Onnenai" rRNA <1..1663 /product="18S ribosomal RNA" BASE COUNT 426 a 326 c 455 g 456 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~AUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccg-- -----ucu-- -------agg 241 guaguauuua uuaga-uaga a-accaac-- ccc--uucg- --gggugaug -uggugauuc 301 auaa-uaa-g cuu--acGAA -UCgca-cgg uuuu---g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCUUUU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc-a-gg-u guc-ggcggc -ccg-Acac- -A----gu-- gu-gugg-gu gc----cug- 781 cc--g-g-c- -gc-c==gcc aUCCUuggg- uggaagc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGG--gu 1201 u-ucuuuuuG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UGGACGGGAA AGGGCA-CCA 1321 CCCAGGGAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA GCGGGGAAAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-CGGAG ACCCCUGCCU GCU-AAAUAG -uugggc-ga gugauuag-u cacuGgc-uG 1561 ---cagcuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuc--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUU-UGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=gcuu ccc-uucacu ggga=g=gcu 1921 guu-gcgagg aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAA~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AB085831 DEFINITION Eunotia monodon var. asiatica gene for 18S ribosomal RNA, partial sequence. ACCESSION AB085831 VERSION AB085831.1 GI:21320865 KEYWORDS . SOURCE Eunotia monodon var. asiatica ORGANISM Eunotia monodon var. asiatica Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Eunotiophycidae; Eunotiales; Eunotiaceae; Eunotia. REFERENCE 2 (bases 1 to 1661) AUTHORS Mayama,S. TITLE Direct Submission JOURNAL Submitted (27-MAY-2002) Shigeki Mayama, Tokyo Gakugei University, Department of Biology; Nukuikita-machi 4-1-1, Koganei-shi, Tokyo 184-8501, Japan (E-mail:mayama@u-gakugei.ac.jp, Tel:81-42-329-7524, Fax:81-42-387-3992) MEDLINE NONE FEATURES Location/Qualifiers source 1..1661 /organism="Eunotia monodon var. asiatica" /strain="A-0046" /db_xref="taxon:196681" /country="Japan:Niigata, Kooridono Pond" rRNA <1..1661 /product="18S ribosomal RNA" BASE COUNT 426 a 332 c 450 g 452 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~UAUUU-GA- AU-NCCCU-- --UA-CUAAU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccg-- -----ucc-- -------agg 241 guaguauuua uuaga-uaga a-accaac-- ccc--uuug- --gggugaug -uggugauuc 301 auaa-uaa-g cuu--gcGAA -UCgca-cgg cuuu---g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc-a-gg-u gcg-agcggc -ccg-Acac- -U----UU-- gu-gugg-gu gc----cug- 781 uu--c-g-c- -gc-c==gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGG--gu 1201 c-ucuuuuuG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggc-ga gugauuag-u cacucgc-ug 1561 ---cagcuUC UUAGAGGGAC GUgcauu-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGucu--- -CACC-UUGG CCGAGA-GGC CU-GGGCAAU CUU-UGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacg=guuu ccc-UUUGCU ggga=g=gcu 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACCUGCAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AB085830 DEFINITION Eunotia formica var. smatrana gene for 18S ribosomal RNA, partial sequence. ACCESSION AB085830 VERSION AB085830.1 GI:21320864 KEYWORDS . SOURCE Eunotia formica var. smatrana ORGANISM Eunotia formica var. smatrana Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Eunotiophycidae; Eunotiales; Eunotiaceae; Eunotia. REFERENCE 2 (bases 1 to 1689) AUTHORS Mayama,S. TITLE Direct Submission JOURNAL Submitted (27-MAY-2002) Shigeki Mayama, Tokyo Gakugei University, Department of Biology; Nukuikita-machi 4-1-1, Koganei-shi, Tokyo 184-8501, Japan (E-mail:mayama@u-gakugei.ac.jp, Tel:81-42-329-7524, Fax:81-42-387-3992) MEDLINE NONE FEATURES Location/Qualifiers source 1..1689 /organism="Eunotia formica var. smatrana" /strain="A-0045" /db_xref="taxon:196679" /country="Japan:Tochigi, Saino-ko Pond" rRNA <1..1689 /product="18S ribosomal RNA" BASE COUNT 434 a 332 c 458 g 465 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccg-- -----uca-- -------agg 241 guaguauuua uuaga-ugga a-accaac-- ccc--uucg- --gggugaug -uggugauuc 301 auaa-uaa-g uuu--acGAA -UCGCA-cgg cguu---g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCUUUU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc-a-gg-c guc-ggcggc -ccg-acAC- -U----gu-- gu-gugg-gu gc----cug- 781 uu--g-g-c- -gc-c==gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCGGAAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCggg--gu 1201 u-ucuuuuuG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggc-ga gugaUUAG-u cacuGgc-uG 1561 ---cagcuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUCCAA 1681 CGAGuua--- uuuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUU-UGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacg=gcuu ccc-uucacu ggga=g=gcu 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ESP535145 DEFINITION Eunotia sp. M16 18S rRNA gene, clone M16. ACCESSION AJ535145 VERSION AJ535145.1 GI:41393003 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Eunotia sp. M16 ORGANISM Eunotia sp. M16 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Eunotiophycidae; Eunotiales; Eunotiaceae; Eunotia. REFERENCE 2 (bases 1 to 1740) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1740 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 448 a 329 c 453 g 482 t 28 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~AUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccg-- -----ucu-- -------agg 241 guaguauuua uuaga-ugga a-accaac-- ccc--uucg- --gggugaug -uggugauuc 301 auaa-uaa-g cuu--gcGAA -UCGCA-ygg cucu---G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAR GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG ARR-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUAAAAA AGCUCGUAGU U-GGAUUUGu 721 ggc-a-gg-u gcg-ugcugc -ccg-acac- -u----gu-- gu-guug-gu ugu---uag- 781 ug--c-a-c- -gc-c==gcc auccuugggg uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCR RYWAGGGAUU GGCRGG--GY 1201 Y-ucruuwyG U-CUCCG--U CAGCACCUUA UGAGAAAUCA Y-WARWCUUU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG UUGAAGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UKgcgy-ka gugaUUWG-u cacuGry-kU 1561 ---karcuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUYC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- -uuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUU-UGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacg=auuu ccc-uuuauu ggga=g=guu 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAA~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ECF535146 DEFINITION Eunotia cf. pectinalis f. minor 18S rRNA gene, strain L474. ACCESSION AJ535146 VERSION AJ535146.1 GI:41393004 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Eunotia cf. pectinalis f. minor ORGANISM Eunotia cf. pectinalis f. minor Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Eunotiophycidae; Eunotiales; Eunotiaceae; Eunotia. REFERENCE 2 (bases 1 to 1804) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1804 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 469 a 351 c 482 g 502 t ORIGIN 1 ~~~~~UCGUC GACAACCU-G UUGAUCCUGC GAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU AGAUGCGUC- AAuacccg-- -----ucu-- -------agg 241 guaguauuua uuaga-ugga a-accaag-- cc---uucg- --gggugaug -uggugauug 301 auaa-uaa-g cuu--gcGAA -UCGCA-ugg cucu---G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGGGAUC-AA UUGGAGGGCA AGUCUGGUGG CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUAA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc-a-gg-u gcg-ugcggu -ccu-acAC- -U----gu-- gu-gugg-gu gc----uug- 781 ug--c-g-c- -gc-c==gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA aUAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGCCGCACC A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCggg--gu 1201 u-ucauuuuG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGGGGAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAUgguGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggc-ga gugaUUAG-u cacuGgc-uG 1561 ---cagcuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCCcUGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUu--- -uaCC-UUGG CCGAGA-GGC CU-GGGCAAU CUU-UGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAAC 1801 -AUCAAUCUG CAUUGAUUAC G=CCCUcgCC UUUGUACACA CCGCC=GUCG =ACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacg=auuu ccc-uuuauu ggga=g=guu 1921 guu-gcgaga aCUUAUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACCU-CAG-A -GAUCAAGCu ucgauccc~~ ~~~~~~~~~~ ~~~~ // LOCUS AY180015 DEFINITION Uncultured diatom clone CCW21 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION AY180015 VERSION NONE KEYWORDS . SOURCE uncultured diatom ORGANISM uncultured diatom Eukaryota; stramenopiles; Bacillariophyta; environmental samples. REFERENCE 2 (bases 1 to 1715) AUTHORS Stoeck,T. and Slava,E. TITLE Direct Submission JOURNAL Submitted (14-NOV-2002) Marine Science Center, Northeastern University, East Point, Nahant, MA 01908, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1715 /product="18S small subunit ribosomal RNA" BASE COUNT 435 a 336 c 471 g 473 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAA-GC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UG-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCguc- ggugcccuu- -----uucca -----g-ggg 241 gcagcauuua uuaga-ugga a-ACCAgC-- ccc--uccg- --gggugaug -uggugauuc 301 auaa-uaa-u cgu--guGGA -UCGCa-cgg cuuca--g-c cagc-gauGG AUCGUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGAUGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AAACA GGGAGGUAGU GAC-AACAAA 541 UAACAGUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Guauuugu 721 ggc-a-ug-g uuu=gggcuc -gca-acccu cga---uugg ga-guug-gu g-----uug- 781 cc--c-u-g- -cg-uu=gcc aucUUUGGC- CAGAACU-UG UGU-G-GCA- UUAGGUUGUC 841 GUG-CAG--G G-A-UGUC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC--AAG-CA 901 GGC-UUA-gg cuGUugAAUA -UGUUAGCAU GGAAUAAUGA GAUAGGACUU UG-gugcUAU 961 UUUGGUUGGU UUGC-gcacc a-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CAUAUUCCAC UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACCA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGa--gu 1201 u-ucguuaug u-cuuca--u cagcaccuuA GGAGAAAUCA C-AAGUC-UU UGGGCU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU ACU-AAGUAG -Ucgcau-ga guga-uuuuu cacuggu-gc 1561 ---cGACUUC UUAGCGGGAC GUGCAUU-UU AUUAGAUGCA -GGAGGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUGG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCUUCCAG 1681 CAAGuuu--- --uCC-UUGG CCGAGA-GGC CA-GGGCAAU CUUUUGAACA UGCGUCGUGA 1741 UAGGGAUAGA CUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGggaucgc -agcc=gguu ugc-uucguu guga=a=ugg 1921 acu-gcgaga acuuGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NVE297724 DEFINITION Navicula cryptocephala var. veneta 18S rRNA gene, isolate NCB. ACCESSION AJ297724 VERSION AJ297724.1 GI:10697089 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Navicula cryptocephala var. veneta ORGANISM Navicula cryptocephala var. veneta Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Navicula. REFERENCE 2 (bases 1 to 1781) AUTHORS Beszteri,B. TITLE Direct Submission JOURNAL Submitted (01-OCT-2000) Beszteri B., Department of Microbiology, Eotvos Lorand University, Muzeum krt. 4/a., Budapest,1088, HUNGARY MEDLINE 21383444 FEATURES Location/Qualifiers rRNA 1..1781 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 468 a 342 c 467 g 502 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~CCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-u uuu--ac-uU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUUUUAAA -CAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccu-- -----ucu-- -------ggg 241 guaguauuua uuaga-uaga a-accaac-- ccc--uucg- --gggugaug -uggugaauc 301 auaa-uaa-g cuu--gcGGA -UCGCA-UGg uuucg--g-c cggc-gAUGG AUCAUUCUUg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGG UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CAUAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU AUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUgu 721 ggc=g-ua-c ggu-guguuc -cgg-gcac- -u----ug-- uu-gucu-ga gu----aac- 781 uu--g-c-c- -gu-u-=gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACUU UU-UCGCUAU 961 UUU-GUUGGU UUGC-gCGAG A-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAN UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUgga--gu 1201 c-ucguuacG U-CUCCA--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCACUGCCU GCU-AAAUAG -cccagu-ga gugaaucu-u cacugac-ug 1561 c--uggcuUC UUAGAGGGAC GUgcaUU-cu aucaGAUGCA -GGAGGAUAG UGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGNACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- -uACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAAUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=aguu cac-UUUAUU gggg=a=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAGCa ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525663 DEFINITION Pseudogomphonema sp. LM-2002 small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525663 VERSION NONE KEYWORDS . SOURCE Pseudogomphonema sp. LM-2002 ORGANISM Pseudogomphonema sp. LM-2002 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Pseudogomphonema. REFERENCE 2 (bases 1 to 1743) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1743 /product="small subunit ribosomal RNA" BASE COUNT 456 a 337 c 456 g 493 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-u uuu--ac-uU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAURAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccu-- -----ucu-- -------ggg 241 guaguauuua uuaga-ugga a-accaac-- ccc--uucg- --gggugaug -uggugaauc 301 auaa-uaa-g cuu--gc-GA -UCGCa-ugc cuucg--g-g cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU AUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc=g-ug-u ggc-gagcuc =cgg-gcac- -u----uu-- gu-gucu-ga gc----agu- 781 uc--g-c-c- -gc-u-=gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACUU UU-UCGCUAU 961 UUU-GUUGGU UUGC-gCGAA G-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUgga--gu 1201 c-ucguuacg u-cucca--u cagcaccuUA UGAGAAAUCA C-AAGUC-UU UUGGGU-CCG 1261 GGGG-GAGUA -UUGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCACUGCCU GCU-AAAUAG -cccagu-ga gugaauuu-u cacugac-ug 1561 c--uggcuUC UUAGAGGGAC GUgcauu-cu aucaGAUGCA -GGAGGAUAG UGGCUAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- -uACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAAUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -gacc=aguu cac-UUCAUU guga=g=uug 1921 guu-gugaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525664 DEFINITION Pleurosigma sp. LM-2002 small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525664 VERSION NONE KEYWORDS . SOURCE Pleurosigma sp. LM-2002 ORGANISM Pleurosigma sp. LM-2002 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Pleurosigmataceae; Pleurosigma. REFERENCE 2 (bases 1 to 1745) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1745 /product="small subunit ribosomal RNA" BASE COUNT 455 a 339 c 450 g 500 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CUU--ac-uU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccu-- -----ucu-- -------ggg 241 guaguauuua uuaga-uaga a-accaac-- ccc--uucg- --gggugaua -uggugauuc 301 auaa-uaa-g cuu--gcGGA -UCGCa-cgg uuuuu--g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAGUGCC -GGGCCU-UU ACAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUgu 721 ggc=u-ua-c gua-aggcuu -ccg-ucccu -c----uu-g gu-uucg-gu gu----ugc- 781 cu--g-g-c- -gu-u-=g=c auccuuggg- uggaauc-ug ugu-g-gca- uuagGUuguc 841 gug-cag--c aga-uacc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UU-AAAG-CA 901 GGC-UUA-Ug ccGCugAAUA -UAUUAGCAU GGAAUAAUGA UAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGgUAA-U GAUU-AACAG GGCCAACU-- GGGGAUAUU- 1021 CGUAUUCCGC UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUgga--gu 1201 a-ucguuacg u-cucca--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUC UUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cccagu-ga gugauuuu-u cacugau-ug 1561 u--uggcuUC UUAGAGGGAC GUgcauu-gu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- -uuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gguc=aguu ugc-UUCAUU gcga=a=uug 1921 auu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAASGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525665 DEFINITION Fragilariopsis sublineata small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525665 VERSION NONE KEYWORDS . SOURCE Fragilariopsis sublineata ORGANISM Fragilariopsis sublineata Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Fragilariopsis. REFERENCE 2 (bases 1 to 1745) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1745 /product="small subunit ribosomal RNA" BASE COUNT 452 a 330 c 452 g 511 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU AUGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-u uuu--ac-uU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccu-- -----ucu-- -------ggg 241 guaguauuua uuaga-uuga a-accaac-- ccc--uucg- --gggugaug -uggugauuc 301 auaa-uaa-g cuu--gcGGA -UCGCA-UGC CUUU---G-g cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UC UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUgu 721 ggu=g-ug-u cca=gucggc -cuu=ugcuc -u----uu-g ag-ugauagu gc----ugu- 781 ua--c-u-g- -gu-cu=gcc auguuuggg- uggaauc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccUCugAAUA -UAUUAGCAU GGAAUAAUGA UAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACU G-AGgUAA-U GAUU-AAGAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGa--gu 1201 u-ucguuucg u-cuccg--u CAGCACcuuG UGAGAAAUCA U-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UCC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUAAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cacgug-ua gugu-uua-u cacugca-uu 1561 u--gugcuUC UUAGAGGGAC GUgcguu-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuc--- uuACC-UUGG CCGAGA-G-- cU-GGGCAAU CUUUUGAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUGGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gguu=aguu ucc-UUUAUU ggaa=g=uua 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF374482 DEFINITION Thalassiosira antarctica 18S ribosomal RNA gene, partial sequence. ACCESSION AF374482 VERSION AF374482.2 GI:21729620 KEYWORDS . SOURCE Thalassiosira antarctica ORGANISM Thalassiosira antarctica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 3 (bases 1 to 1792) AUTHORS Armbrust,E.V. and Galindo,H.M. TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) Oceanography, University of Washington, Box 357940, Seattle, WA 98195-7940, USA REMARK Sequence update by submitter COMMENT On Jul 11, 2002 this sequence version replaced gi:14210196. MEDLINE 21365169 PUBMED 11472926 FEATURES Location/Qualifiers source 1..1792 /organism="Thalassiosira antarctica" /db_xref="taxon:160265" rRNA <1..>1792 /product="18S ribosomal RNA" BASE COUNT 464 a 340 c 466 g 522 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-u uuu--ac-uu uGAA-AC-U- GCGAaCG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccu-- -----ucu-- -------ggg 241 guaguauuua uuaga-uuga a-accaac-- ccc--uucg- --gggugaug -uggugauuc 301 auaa-uaa-g cuu--gcGGA -UCGCA-UGC CUUU---G-g cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU CAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UC UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUgu 721 ggu=g-ug-u cca=guuggc -cuu=ugcuc -u----uu-g ag-ugauagu gc-----uu- 781 ua--c-u-g- -gu-cu=gcc auguuuggg- uggaauc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccUCugAAUA -UAUUAGCAU GGAAUAAUGA UAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACU G-AGgUAA-U GAUU-AAGAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGa--gu 1201 u-ucguuucg u-cucca--u cagcaccuuG UGAGAAAUCA U-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cacgug-ua gugu-uua-u cacugca-uu 1561 u--gugcuUC UUAGAGGGAC GUgcguu-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- uuACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -gguu=aguu ucc-UUUAUU ggaa=g=uua 1921 guc-gcgaga acuUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NIZRRNAA DEFINITION Nitzchi apiculata 16S-like ribosomal RNA, complete. ACCESSION M87334 VERSION NONE KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Nitzschia apiculata (sub_species Greg) rRNA. ORGANISM Nitzschia apiculata Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1789) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry MEDLINE NONE FEATURES Location/Qualifiers rRNA 22..1762 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 469 a 346 c 468 g 506 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAuaaAUA-u cuu--ac-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGGAAUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacccu-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-uuga a-accaauu- cc---uucg- ---ggugaug -ugGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG CUUU---G-C CGGC-GAUGG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-gu-c gcu=cgcggc -cug-guac- -u----ua-- -gugccg-gu gc----uug- 781 c---a-g-c- -gg-c-=gcc auccuuggg- uggaacc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug CCGUUGAAUA -UGUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC A-AGGUAA-U GAUU-AAAAG GGACAGUU-- GUGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGA--gu 1201 u-ucauuuug u-cuccg--c CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -CUugca-ua gugaauuu-u cacugug-ug 1561 ---aagCUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGuuu--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcg=aguu ccc-uuuauu ggaa=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAGC~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS USP535163 DEFINITION Undatella sp. p446 18S rRNA gene, clone p446. ACCESSION AJ535163 VERSION AJ535163.1 GI:41393054 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Undatella sp. p446 ORGANISM Undatella sp. p446 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Thalassiophysales; Catenulaceae; Undatella. REFERENCE 2 (bases 1 to 1804) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1804 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 477 a 336 c 461 g 524 t 6 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCGCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAuaaAUC-u cuu--ac-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacuca-- -----uucau u------ugg 241 guaGUAUUUA UUAGA-uuga a-accaac-- ccc--uucg- --gggugaug -ugGUGAUUC 301 AUAA-UAAug uuu--gcGGA -UCGCA-UGG CUUUuu-g-c cggcaGAUGG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GAUAU-UUGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGAU -GUGCCU-au cuAGG-UUUG UCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUM-AA UUGGAGGGCA AGUCUGGUKC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUYA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=a-gu-c ucu=gugugc -ccuuca--- -cuuuugu-- --uguug-gu gc----uac- 781 uc--g-g-a- -gu-c==gcc auccuugaa- uggaacc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uguu-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug CCGYUGAAUA -UGUUAGCAU GGAAUAAUAA UAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcAUC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACAAGGGAUc aggcaa--gu 1201 c-ucguuuug uucuugc--u uggcaccuua agAGAAAUCA U-AAGUC-UU UGGGKU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGRUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-GGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 GGAA-C-GAG ACCC-UACCU GCU-AAAUAG -uugguc-ua gugaauuu-u cacugga-ug 1561 ---cagCUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAGGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CAAGuuu--- -CACC-UUGA CCGAGA-GGC CU-GGGCAAU CUUUUUAACG UGCAUCGUGA 1741 UAGGGAUUGA AAUUUGCAAU UAUUAUUUAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacg=aguu ccc-uuuauu ggga=g=uug 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAGCu ugg~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS RSP535144 DEFINITION Rossia sp. CH2 18S rRNA gene, clone CH2. ACCESSION AJ535144 VERSION AJ535144.1 GI:41393002 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Rossia sp. CH2 ORGANISM Rossia sp. CH2 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Rossia. REFERENCE 2 (bases 1 to 1715) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1715 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 440 a 325 c 458 g 469 t 23 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCW-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAY ACAUSCGUY- MMucaccc-- -----cag-- -------ugg 241 guaguauuua uuaga-ugga a-accrac-- ccc--uuyg- --gggugaug -uggygauum 301 auaa-uaa-g cku--gcRAA -UCGCA-ygg cuyu---G-C CGGC-GAUGG AUCAUUCAAG 361 UUUUcug-CC CUAUCAGCUU UGGAWGGUAG GGUMU-UGGC CUACCWUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAR GGAGCCUGAG AGACKGCUAC CACAUCCAAG 481 GAASGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUMAA 541 UAACAAUGCC -GGGCCU-UU gUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc-a-gg-u gcg-ugguug -guc-caaa- -uu---gu-- uuugguac-- -c----uua- 781 cg--a-a-c- -ac-u==gcc auccyuuggu cggaacc-gg ugu-g-gca- UUAGGUuguc 841 gugccgg--g gga-gkuc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGUU UCaAAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -gAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGU-gCACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUUC 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CUGGCGAAAG 1081 CAUUUACCCA AGGGA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA GUUAGGGAUU GGCagg--gc 1201 c-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA U-UAAACUUU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UGgcgc-ga guga-UUu-u cacuggc-gu 1561 ---gaacuUC UUAGAGGGAC GUGCAUU-CU AUUAGAUGCA GGGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAAgug--- UUUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 CAUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaca=ggug cc--uuuauu -ggu=g=uca 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA -GA~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ACF535158 DEFINITION Amphora cf. capitellata 18S rRNA gene, clone p363. ACCESSION AJ535158 VERSION AJ535158.1 GI:41392034 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Amphora cf. capitellata ORGANISM Amphora cf. capitellata Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Thalassiophysales; Catenulaceae; Amphora. REFERENCE 2 (bases 1 to 1766) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1766 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 458 a 344 c 468 g 495 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GACUA 61 AGCCAUGC-A -AGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacccu-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-Ugga a-accaac-- ccc--uucg- --gggugaug -UGGUGAAUC 301 AUAA-UAA-g cuu--gcGGA --gYC--c-- -ggu------ -gGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGGGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUUG-acaCA AGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-gu-u ccu=guggu- -ccg------ -a---uuu-- -----cg-gu ac-----uu- 781 uc--u-g-g- -ga-cu=gcc aUCcuuggg- uggaucc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GUGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA AU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GG-cgg--gu 1201 u-ucguuacg u-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccuuu-ga guga-uuu-u cacugau-uc 1561 ---gGGCUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- ---CC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=ggug cc--uuuauu -ggu=g=ucg 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AMO243061 DEFINITION Amphora montana partial 18S rRNA gene, isolate TSA2. ACCESSION AJ243061 VERSION AJ243061.1 GI:5101678 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Amphora montana. ORGANISM Amphora montana Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Catenulaceae; Amphora. REFERENCE 2 (bases 1 to 1729) AUTHORS Beszteri,B. TITLE Direct Submission JOURNAL Submitted (10-JUN-1999) Beszteri B., Dept. of Microbiology, Eotvos Lorand University, Budapest, Muzeum Krt. 4/A, H-1088, HUNGARY MEDLINE NONE FEATURES Location/Qualifiers source 1..1729 /organism="Amphora montana" /isolate="TSA2" /db_xref="taxon:97221" /country="Hungary" rRNA <1..1729 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1729 /gene="18S rRNA" BASE COUNT 451 a 335 c 458 g 485 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U ACCCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -AGU-CUAAG UAUAAAUA-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacccc-- -----ucu-- -------ggg 241 guaGCAUUUA UUAGA-Ugga a-accaac-- ccc--uucg- --gggugaug -UGGUGAAUC 301 AUAA-UAA-g uuu--gcGGA -UCGC--c-- -ggu------ -gGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGGGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUUG-acaCA AGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-u- cuAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=g-gu-c ccu=gaggu- -ccg------ -a---uuc-- -----cg-gu ac-----uu- 781 uu--g-g-g- -ga-cu=gcc aUCcuuggg- uggaucc-ug ugu-g-gca- uuagguuguc 841 gcg-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU CG-GuacUAU 961 UUU-GUUGGU UUGc-gcacu g-GGGUAA-U GAUU-AAUAG GGACAGUU-- GUGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA AU-GCGAAAG 1081 CAUUUUCC-A AG-GA-UGUU UUCGUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGAGAUU GGGAAA--gu 1201 u-ucguuacg u-cuccc--u cagcaccuuA GGAGAAAUCA U-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAAAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuuu--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccuuu-ga guga-uuu-u cacugau-uu 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAAUCAA 1681 CGAGUUA--- ---CC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACC UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAAGCC UCGGGAuugu -ggcc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUGA ACCUUAUCAU CUAGAGGAAG GUGAAGACGU AACAAGGUUU 1981 CCGUAGGUGA ACCUG~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PLA535189 DEFINITION Planothidium lanceolatum 18S rRNA gene, strain L1249. ACCESSION AJ535189 VERSION AJ535189.1 GI:41393033 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Planothidium lanceolatum ORGANISM Planothidium lanceolatum Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Achnanthales; Achnanthaceae; Planothidium. REFERENCE 2 (bases 1 to 1777) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1777 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 465 a 358 c 444 g 509 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~AC---- UUGAUCCUCC AACUAGCCAU ACCC-C-UCU CAAA-CAUUA 61 ACCCAUCC-A -CCU-CUAAC UAUAAACCCu uuu--AC-UU UAAA-AC-U- CCCAAUG-CC 121 CCAUUAUAUC AGUUAUACUU -CCUUU-GAU AG-CCCCU-- --UG-GUAGU UGA-UUAAGC 181 GUAGUAAUUC UAGAGCUAAU AGAUGcgua- uugacu---- -----uucg- ---------a 241 gucGUGUUUA UUACA-UUGA A-accaac-- ucc--uucg- --gggugaug -UGGUAAUUC 301 AUAA-UAA-a uuu--gcGGA -UCGCa-ugg cuugu--g-g cgGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGAC -GGGCCU-Uu cuAGG-UCUG uCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCA GAG-AUC-AA UUGGAGGGCA AAUCUUGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGG-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuuuu 721 ggc=u-gu-c cau-uuuggu -ccu-gg--- -ca-uugu-- ---cugg-gu a-----cug- 781 gau-g-u-g- -gg-c-=guc aUCcuuggg- uggaagc-ag ugu-g-gca- uuagguuguc 841 gug-uug--c gga-ugcc-c auc-GUUUAC UGUGAAAAAA UCAGCGCGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUG -UAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGG--gu 1201 u-ucguuucg u-cucca--u cagcaccuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-CAGU GCAGCC-UCC --GCUUAAUU UGACUYAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-CU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCU-CCU GCU-AAAUAG -uugugu-ga guga-auu-u cacugac-au 1561 ---uGGCUUC UUAGAGGGAG CUGCAUU-cu auuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUaa--- -uuCC-UUGG CCGAGA-G-C CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCCCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcc=agug cc--uuuacu -cgu=g=uug 1921 gcu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG CUGAAGUCGU AACAAGGUUU 1981 CCGUAGUU-A ACCUGCAGAA GAAUCAAAUu ua~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS LAT544659 DEFINITION Lyrella atlantica partial 18S rRNA gene. ACCESSION AJ544659 VERSION AJ544659.1 GI:42627636 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Lyrella atlantica ORGANISM Lyrella atlantica Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Lyrellales; Lyrellaceae; Lyrella. REFERENCE 2 (bases 1 to 1706) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1706 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 472 a 304 c 421 g 501 t 8 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~AUGC-A -UGU-CUAAG UAKAAAUg-u cau--ac-UG UGAA-AC-U- GUGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACU 181 GUAGUAAUUC UAGAGCUAAU ACAUGcauc- aauaccuc-- -----uau-- -------kgg 241 guaGUAUUUA UUAGA-UUGA A-ACCAAc-- ccc--uuug- --ggguaaug -UGGUGAUUC 301 AUAA-UAA-g cac--auGAA -UCACa-aug cuuu---g-c cagu-RAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGAUGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCu -gGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-ACA AGG-AUC-MM UUGGMGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAAAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauaucu 721 gau=g-cc-a cuu=gaaguc -ca------- -uu--uuu-- ------u-gu ------acu- 781 ac-ua-g-g- -ug-uu=guc auccuuggg- uagagcu-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uacc-u auc-AUUUAU UGUGAAAAAA UCAGUGCGU- UC-AAAG-CA 901 AGC-UUA-UG CUGUUGAAUG -UAUUAGCAU GGAAUAAUAA UAUAGGACUU UG-GuacUAU 961 UUU-GUUGGU UUAu-gcacu a-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAAGU GAAAUUCUUG GAUUUUUGGA AGACAGACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACAAGGGAUU GGUGGG--gu 1201 c-ucguuacg u-cucca--u cagcaccuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugawu cyau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UCUCGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UACAAC-Ca gugA-AUU-u CACUgcu-au 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCUGCACGCG CGCUACACUG AUGCAUUCAA 1681 CAAGUUA--- -UUCC-UUAG CUGAGA-GGU CU-GGGUAAU CUUUUGAAUA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA AUGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGAAuugu -gauc=agug cc--uuuacu -ggu=a=cug 1921 gua-auaaga aCUUGUCUGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CCY535156 DEFINITION Cymbella cymbiformis 18S rRNA gene, strain L254. ACCESSION AJ535156 VERSION AJ535156.1 GI:41393010 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Cymbella cymbiformis ORGANISM Cymbella cymbiformis Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Cymbellales; Cymbellaceae; Cymbella. REFERENCE 2 (bases 1 to 1768) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1768 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 472 a 320 c 438 g 537 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUUGUCU CAAA-GAUUA 61 AGCCAUGC-A -GGU-CUAAG UACAAAUA-U UUC--AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUAAUAGUU -UAUUU-GAU AA-UCCUU-- --UA-CUACU UGG-AUAACU 181 GUAGUAAUUC UAGAGCUAAU ACAUGugua- aaugcccu-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-Uuga a-acuuaa-- ccc--uuc-- ---ggugaug -UGGUGAcUC 301 AUAA-UAA-g uuu--gcGGA -UUGCa-ugg auuu---u-c cggu-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGCC CUACCAUUGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUURA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCU -GGGCCU-u- acAGG-UUUG UCACUUGGAA UG-AG-UACA AU-UCAAA-C 601 UACUUA-ACA AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 ACUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggaugugu 721 ggu=a-ac-u uuc=agcggu -ca------- -u---uuu-- ------u-ga ------cuu- 781 cu--c-u-a- -gg-ua=acc aucuuuggg- ugaaacc-aa ugu-g-gca- uuaguuuguc 841 ccg-uug--g uga-uucc-c auc-AUUUAC UGUGAAAAAA UCAGUGCGU- UC-AAAG-CA 901 GGC-UUA-UG CCAUUGAAUG -UAUUAGCAU GGAAUAAUAU GAUAGGACCU CG-GuacUAU 961 UUU-GUUGGU UUGu-gcacc a-AGGUAA-U GAUU-AAUAG GGAUAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GAUUGUU UucaUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACAAGGGAUU GGUGGG--gc 1201 c-ucguaaug a-gccca--u cagcaccuuA AGAGAAAUCA U-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-A-C AAGGCUGAAA CUUAAAGAA- UUG-CGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGC--UAC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-U-AAGGUU UACAUAGUUA -GAAGACGUC UUUCUUUGUU UUAUU-GGGU 1441 GGUGGU-CAU GGCCGUUCUU AUGU-UUGUG G-UGUG-UUG UC-UGG-AAU CCCUG-UAAC 1501 G-A--C--AG ACCGCUGCCU GCU-AAAUAG -uucuuu-aa guua-uuugc aaccuuacuu 1561 u--gauCUUC UUAGAGGGAC GUGCAUU--u uuuaGAUGCA -GUAAGGUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUGUUCAA 1681 CAAGUUU--- ---CC-UUGA CUGAGA-AGU CU-GGGCAAU CUUCUGAAAc cccugcgugu 1741 UAGGGAUAGA UUAUUGCAAU UCUUAAUUUU GAACGGGGGA UUCCUCGUCC CCGCGCCAUC 1801 -AUACGUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCC-gucu gACCUAAAGA 1861 UUGAAUGGUC AGGUGAAGGG UUGGGAuuuu -aaca=agug ug--uuuauu -ggu=g=aug 1921 guu-gggaga aCUUGUUUAA ACCUUCUCAU UUAGAGGACG GUGAAGUUGU AACAAGGUUU 1981 CCGUAGGUGG ACCUGAUGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SFA535161 DEFINITION Surirella fastuosa var. cuneata 18S rRNA gene, clone p472. ACCESSION AJ535161 VERSION AJ535161.1 GI:41393014 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Surirella fastuosa var. cuneata ORGANISM Surirella fastuosa var. cuneata Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Surirellales; Surirellaceae; Surirella. REFERENCE 2 (bases 1 to 1780) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1780 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 484 a 345 c 447 g 503 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~CUGG UUGAUCCUGC CAGUAGUCAU AUGCUCGUCU CAAA-AGCUA 61 ACCCAUGC-A -CGU-CUAAU UAUAAAUC-A UUU--AC-UU UAAA-AC-U- CCAAAUC-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-AAU AA-UCCCU-- --UA-CUACU UAG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUCcguc- aacaccca-- -----aca-- -------uag 241 gugGUAUUUA UUAGA-Uuga a-accaac-- ccc--uucg- --gggugaug -UGGUSAUUC 301 AUAA-UAA-a auu--gcGGA -UCGCa--gg -cuugu---c cagu-gacAG AUCAUUCAAG 361 UU-UCUGCCC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGGGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUUG-aaaCA AGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu cuAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CACCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 gca=c-gc-c cca=agaugu -cca------ -uauugcu-- -----ug-gu a-----cau- 781 gc--u-g-g- -ug-ug=ugc aUCcuuggg- uggaacu-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uacu-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacu g-AGGUAA-U GAUU-AACAG GGAUAGUU-- GGGGGUAUUC 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACAAGGGAUU GGCagg--gc 1201 uuucguuacg u-cucug--u cagcaccuuA GGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGCGCCAUGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGAAUU GACAGAUUGA CG-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 GACCAC-GAG ACCCCUGCCU GCU-AAAUAG -UUuggc-gA GUGa-uuc-u CACUggc-uu 1561 u--gaACUUC UUAGAGGGAC GUGCAUU-cg acuaGUUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGGACGCG CGCUACACUG AUGCAUUCAA 1681 CaagugU--- --ACC-UUGG CCGAGA--GC CU-GGGCAAU CUUUUGAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA AUGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA C-GCCGGCUG CACCUACAGA 1861 UUGGAUGGUC CGGUGAAGCC UCGGGAuugu -gacu=gcua cc--uuuacu -ggu=a=aua 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACAUGCAGAA GGAUUG~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CRA535162 DEFINITION Campylodiscus ralfsii 18S rRNA gene, clone p473. ACCESSION AJ535162 VERSION AJ535162.1 GI:41393015 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Campylodiscus ralfsii ORGANISM Campylodiscus ralfsii Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Surirellales; Surirellaceae; Campylodiscus. REFERENCE 2 (bases 1 to 1757) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1757 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 490 a 326 c 438 g 501 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~--AUCCUGC CAGUAGUCAU AUGCUCGUCU CAAA-GACUA 61 AGCCAUGC-A -GGU-CUAAG UUCAAAAu-c auu--aa-uC UGAA-AC-U- GCUAAUG-GC 121 UCAUUAUAUC AGCUAUUGUU -UAUAG-GAU AAUUUCUU-- --CA-CUACU UGG-AUAACU 181 GUAGUAAUUC UAGAGCUAAU ACAUGuuuu- aacacucu-- -----ugg-- -------agg 241 gugGUAAUUA UUAGG-Uuga a-gccaac-- ccu--uaac- --aggagaug -UGGUGAUGC 301 AUAA-UAA-c uuu--gcUGA -UUGC--UG- -auucc---- CAGC-AAUAC AACUCUCAAg 361 uu-ucug-cC CUAUCAGCUU AGGACGGUAA GGUAU-UGGC UUACGGUGGC UCUAACGGGU 421 AACGGGSAAU CAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGAUGGCUAC UACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUUG-gaaCA AGGAGGUAGU GAC-AAAAAA 541 UAACAGUGAC -GGGCCU-u- acAGG-UCUG UCAAUUGGAA UG-AG-AGCA AU-UUAAA-U 601 CCCUUA-UCA AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CAUAUACUUA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauguug 721 gug=u-gy-g gug=aggauc -ca------- -a---ucu-- ------u-gg ag----uac- 781 uu--a-c-u- -cg-ca=ugc cucuuugggu ugauucc-cu ugu-a-gca- uuagauuguu 841 gca-uag--g aau-gucc-c aac-AAUUAC UGUGAAGAAA UUAGAGUGU- UC-AAAG-CA 901 AGC-UUU-UG CCUGUGGAUA -UACUAGCAU GGAAUAAUAA AAGAAGACCU UG-AugcCAU 961 UUU-GUUGGU UUAa-gcaug a-AAGUAA-U GAUUCGAUAG AGACAGUU-- GGGGGUAUC- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUCCUGGA AGACAAACUG CU-GCAAAAG 1081 CAUUUACC-A AG-GA-UGUU UUUGUUAAUC AAGAGCAAAA -GU-UAGGG- GAUCA-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACCAUACCA ACAAGGGAUU GGcagg--gc 1201 uuucauuaug u-cccug--a cagcaccuaa ugagaaaUCA --AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUGG U-G-AGGAUU GACAGACUGA -G-AG-C-uc uuucuugauu uuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uucaaa-uA GUGg-uuu-u CACUguu-ug 1561 ---acACUUC UUAGAGGGAC GUGCAUU-ca uuauGUUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCUGCACGCG CGCUACACUG AUGCACCCAU 1681 CAAGUUc--- --uCC-UUGA CUGAGA-GGU AC-AGGAAAU CUUU-GAAUg UGCAUCGUGA 1741 UAGGGAUUGU UUAUUGCAAU UUUUAAUCAU GAACGAGGAA UUCCUAGUAA ACAUG-GAUC 1801 -AACAAUCUG UGUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGAUC CGGUGAGGUC UUUGGAuugg -guuu=gaug cc--uuuacu -ggu=a=uug 1921 gau-gcaaga aCCUGCCCGA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ASP535153 DEFINITION Anomoeoneis sphaerophora 18S rRNA gene, strain L1222. ACCESSION AJ535153 VERSION AJ535153.1 GI:41392033 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Anomoeoneis sphaerophora ORGANISM Anomoeoneis sphaerophora Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Cymbellales; Anomoeoneidaceae; Anomoeoneis. REFERENCE 2 (bases 1 to 1779) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1779 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 468 a 335 c 464 g 512 t ORIGIN 1 ~~~~~~~~~~ ~~~~~CCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-c uuu--ac-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UCUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguu- aauacccu-- -----ucu-- -------ugg 241 guaGCAAUUA UUAGA-UUGA A-ACCAAc-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGAA -UCGCA-CAG ccua---g-c UGGC-GAUGG AUCAUGCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUCACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCU -GGGCCU-au cuAGG-UCUG GCACUUGGAA UG-AG-AACA AU-UUAAA-U 601 CUCUUU-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaacuugu 721 gau=g-ga-a cug=aaugac -uca------ -u---cau-- -----ug-au g-----uca- 781 ga--a-a-g- -cu-uu=guc aauuuugag- uggaacu-ug cau-g-gca- uuagguuguu 841 gug-uag--g gga-ugcu-c auc-GUUUAC UGUGAAAAAA UCAGCGCGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUG -UAUUAGCAU GGAAUAAUAA GAUAGGACUU GU-GuacUAU 961 UUU-GUUGGU UUGu-guacg c-AGGUAA-U GGUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACAAAGGAUU GGUGGG--gu 1201 c-ucguuaug u-cccca--u cagcacuuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGG-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -cacuag-uA GUGa-uuu-u CACUgca-ug 1561 ---gGGCUUC UUAGAGGGAC GUGCAUU-uu auuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UUCC-UUGG CUGAGA-AGU CU-GGGCAAU CUUGUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -ggcc=ucug cc-cuucacu -ggu=u=ggg 1921 guu-gugaga aCUUGUCUGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAU GGUUCAUGU~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AB085833 DEFINITION Gomphonema pseudaugur gene for 18S ribosomal RNA, partial sequence. ACCESSION AB085833 VERSION AB085833.1 GI:21320867 KEYWORDS . SOURCE Gomphonema pseudaugur ORGANISM Gomphonema pseudaugur Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Cymbellales; Gomphonemataceae; Gomphonema. REFERENCE 2 (bases 1 to 1650) AUTHORS Mayama,S. TITLE Direct Submission JOURNAL Submitted (27-MAY-2002) Shigeki Mayama, Tokyo Gakugei University, Department of Biology; Nukuikita-machi 4-1-1, Koganei-shi, Tokyo 184-8501, Japan (E-mail:mayama@u-gakugei.ac.jp, Tel:81-42-329-7524, Fax:81-42-387-3992) MEDLINE NONE FEATURES Location/Qualifiers source 1..1650 /organism="Gomphonema pseudaugur" /strain="M-0130" /db_xref="taxon:196682" /country="Japan:Tokyo, Tama River, Fuchu, Koremasa" rRNA <1..1650 /product="18S ribosomal RNA" BASE COUNT 428 a 311 c 436 g 475 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UGAA-AC-UG GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAuacccu-- -----ucu-- -------cgg 241 guaGUAUUUA UUAGA-UUGA A-accaac-- ccc--uucg- --GGGUGAUG -UGGUGAUUC 301 AUAA-UAA-G UUU--GCGAA -UCGCA-UGA CUUU---G-U cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU -CAGG-UCUG GCAcUUGGAA UG-AG-AACA AC-UCAAA-C 601 CACUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc=a-gu-g cuc=gagugc -c-------- -uu-uuuu-- --------gg a-----cac- 781 uc-ug-a-g- -ca-ca=gcc aUCCUuggg- aggaauu-cg ugu-g-gca- uuagguuguu 841 gca-ugg--g gga-uacu-c aAC-UUUUAC UGUGAAAAAA UCAGCGCGU- UC-AAAG-CA 901 AGC-UUA-Ug cuCUugAAUG -UAUUAGCAU GGAAUAAUAA GAUAGGACCG UA-GUACUAU 961 UUU-GUUGGU UUGC-gUAUU U-CGGUAA-U GGUU-AAUAG GGAUAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GUUUAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUggg--gu 1201 u-ucguaaug u-cuccA--U CAGCACCUUA GGAGAAAUCA U-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGG-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -cucggu-gA GUGa-uuu-u CACUgac-uu 1561 ---gagcuUC UUAGAGGGAC GUgcauu-uu uuuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUGUUCAA 1681 CGAGuuu--- -uuCC-UUGG CUGAGA-AGC CU-GGGCAAU CUUGUGAACU CGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUGAUCUU GAACGAGGAA UUCCUAGUAG ACGCA-GAUC 1801 -AUCAAUCUG CGUCGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGGGAuugu -gagu=guug cc--uucacu -ggu=g=aug 1921 uuu-gcaaga aCUUGUCUAA ACCUUAUCAU UUAGAGGA~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS GPA243062 DEFINITION Gomphonema parvulum partial 18S rRNA gene. ACCESSION AJ243062 VERSION AJ243062.1 GI:5101690 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Gomphonema parvulum. ORGANISM Gomphonema parvulum Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Cymbellales; Gomphonemataceae; Gomphonema. REFERENCE 2 (bases 1 to 1744) AUTHORS Beszteri,B. TITLE Direct Submission JOURNAL Submitted (10-JUN-1999) Beszteri B., Dept. of Microbiology, Eotvos Lorand University, Budapest, Muzeum Krt. 4/A, H-1088, HUNGARY MEDLINE NONE FEATURES Location/Qualifiers source 1..1744 /organism="Gomphonema parvulum" /db_xref="taxon:97227" /country="Hungary" rRNA <1..1744 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1744 /gene="18S rRNA" BASE COUNT 462 a 325 c 455 g 502 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ACCCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A CUGU-CUAAG UAUAAAUA-U UAU--AU-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcauc- aauacccu-- -----ucu-- -------cgg 241 guaGUAUUUA UUAGA-UUGA A-ACCAAc-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g uuu--gcGAA -UCGCA-UGA cuuu---g-u CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu -cAGG-UCUG GCACUUGGAA UG-AG-AACA AC-UCAAA-C 601 CACUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=a-gu-g cuc=gagugc -c-------- -uu-uuuu-- --------gg a-----cgc- 781 uc-ug-a-g- -ca-ca=gcc aUCcuuggg- aggaauu-cg ugu-g-gca- uuagguuguu 841 gca-ugg--g gga-uacu-c aac-AUUUAC UGUGAAAAAA UCAGCGCGU- UC-AAAG-CA 901 AGC-UUA-UG CUCUUGAAUG -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UA-GuacUAU 961 UUU-GUUGGU UUGc-guauu a-AGGUAA-U GAUU-AAUAG GGAUAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGG--gu 1201 u-ucguaaug u-cucca--u cagcaccuuA GGAGAAAUCA U-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGG-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -cucggu-gA GUGa-uuu-u CACUgac-uu 1561 ---gAGCUUC UUAGAGGGAC GUGCAUU-uu uuuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUGUUCAA 1681 CGAGUUU--- -UUCC-UUGG CUGAGA-AGC CU-GGGCAAU CUUGUGAACU CGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUGAUCUU GAACGAGGAA UUCCUAGUAG ACGCA-GAUC 1801 -AUCAAUCUG CGUCGAUUAC GUCCCUGCCC UUUGUACACA CCGUCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGAC UCGGGAuugu -gagu=guug cc--uuuacu -ggu=g=aug 1921 uuu-gcaaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ECF535160 DEFINITION Entomoneis cf. alata 18S rRNA gene, clone p540. ACCESSION AJ535160 VERSION AJ535160.1 GI:41393013 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Entomoneis cf. alata ORGANISM Entomoneis cf. alata Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Entomoneidaceae; Entomoneis. REFERENCE 2 (bases 1 to 1772) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1772 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 458 a 348 c 473 g 493 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~CUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GACUA 61 AGCCAUGC-A -CGU-CUAAG UAUAAAUC-U UCU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcgucc aacaccc--- -----auuc- --------gg 241 gugGUAUUUA UUAGA-Ugga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCa-cgg -cuugu---c cggc-gacGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGGGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUUG-aaaCA AGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggacuugu 721 gug=u-ac-c ccu==gaugu -cc------- -uu--uuu-- ------g-gu a-----cgu- 781 uu--g-g-g- -gg-ug=ugc aUCcuuggg- uggaacc-ug ugu-g-gca- uuagguuguc 841 ggg-cag--g gga-ugcu-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-AG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACAAGGGAUU GGCggg--gu 1201 uuucguuacg u-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccggc--A GUGa-ucu-u CACUggc-ua 1561 ---gggCUUC UUAGAGGGAC GUGCAUU-cg acuaGUUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAuucaa 1681 cgagugU--- --ACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCU- CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAAGCC UCGGGAuugu -gacu=guug cc--uuuauu -ggu=g=gcg 1921 guu-gcgaga aCUUUUCUAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACCUGCAGAA GGAUCAAGC~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS LSP535149 DEFINITION Lyrella sp. LM2002 18S rRNA gene. ACCESSION AJ535149 VERSION AJ535149.1 GI:41393006 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Lyrella sp. LM2002 ORGANISM Lyrella sp. LM2002 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Lyrellales; Lyrellaceae; Lyrella. REFERENCE 2 (bases 1 to 1722) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1722 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 477 a 307 c 427 g 503 t 8 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~AUGC-A -UGU-CUAAG UAKAAAUg-u cau--ac-UG UGAA-AC-U- GUGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACU 181 GUAGUAAUUC UAGAGCUAAU ACAUGcauc- aauaccuc-- -----uau-- -------kgg 241 guaGUAUUUA UUAGA-UUGA A-ACCAAc-- ccc--uuug- --ggguaaug -UGGUGAUUC 301 AUAA-UAA-g cac--auGAA -UCACa-aug cuuu---g-c cagu-RAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGAUGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCu -gGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-ACA AGG-AUC-MM UUGGMGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAAAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauaucu 721 gau=g-cc-a cuu=gaaguc -ca------- -uu--uuu-- ------u-gu ------acu- 781 ac-ua-g-g- -ug-uu=guc auccuuggg- uagagcu-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uacc-u auc-AUUUAU UGUGAAAAAA UCAGUGCGU- UC-AAAG-CA 901 AGC-UUA-UG CUGUUGAAUG -UAUUAGCAU GGAAUAAUAA UAUAGGACUU UG-GuacUAU 961 UUU-GUUGGU UUAu-gcacu a-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAAGU GAAAUUCUUG GAUUUUUGGA AGACAGACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACAAGGGAUU GGUGGG--gu 1201 c-ucguuacg u-cucca--u cagcaccuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugawu cyau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UCUCGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UACAAC-Ca gugA-AUU-u CACUgcu-au 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCUGCACGCG CGCUACACUG AUGCAUUCAA 1681 CAAGUUA--- -UUCC-UUAG CUGAGA-GGU CU-GGGUAAU CUUUUGAAUA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA AUGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGAAuugu -gauc=agug cc--uuuacu -ggu=a=cug 1921 gua-auaaga aCUUGUCUGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NSU243064 DEFINITION Eolimna subminuscula partial 18S rRNA gene, isolate c1a. ACCESSION AJ243064 VERSION AJ243064.2 GI:10241808 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Eolimna subminuscula. ORGANISM Eolimna subminuscula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Eolimna. REFERENCE 3 (bases 1 to 1747) AUTHORS Beszteri,B. TITLE Direct Submission JOURNAL Submitted (18-SEP-2000) Beszteri B., Dept. of Microbiology, Eotvos Lorand University, Budapest, Muzeum Krt. 4/A, H-1088, HUNGARY COMMENT On Sep 20, 2000 this sequence version replaced gi:5101855. MEDLINE NONE FEATURES Location/Qualifiers source 1..1747 /organism="Eolimna subminuscula" /isolate="c1a" /db_xref="taxon:97223" /country="Hungary" rRNA 1..1747 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1747 /gene="18S rRNA" BASE COUNT 459 a 341 c 463 g 484 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU CGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACGUGCGUC- AAUACUC--- -----uuc-- -------GGA 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ugc--uucg- --gcaugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Ccua---G-C CGGC-GACGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGACGGUAC UGUAU-UGGA GUACCGUGGC GGUAACGGGU 421 AACGGAAAAU UAGGGUUUGA CACCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUUG-acaCA AGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCA-uu -aCGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=g-cg-a cug=cggcgu cca------- -uu-uauu-- ------u-gg u---ucugc- 781 cg--u-g-g- -uu-gu=gcc aUCcuuggg- uggauuc-ug ugu-g-gca- uuuaguuguc 841 gug-cag--g gga--ccc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGUCUU UG-GuccUAU 961 UUU-GUUGGU UUGc-ggacc a-GAGAAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGG--gu 1201 c-ucguuacG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uuccgu-gA GUGa-auu-u CACUgac-ga 1561 ---gaACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcc=ggug cc--uuuacu -ggu=g=ccg 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGACGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GG~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544645 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain RECT-3. ACCESSION AJ544645 VERSION AJ544645.1 GI:42627622 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1714) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1714 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 444 a 327 c 455 g 488 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacccc-- -----ugu-- -------ggg 241 guaGUAUUUA UUAGA-Ugga a-acccac-- ccc--uccg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-gc-a gau=gcgguu ccgaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gc-au-g-u- -ug-ca=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacg u-cucug--u cagcaccuuA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccugu-gA GUGa-auu-u CACUgau-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544651 DEFINITION Sellaphora pupula 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), strain CAP. ACCESSION AJ544651 VERSION AJ544651.1 GI:42627628 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 26S ribosomal RNA; 26S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer 1; internal transcribed spacer 2; ITS1; ITS2. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 2510) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1734 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 451 a 335 c 461 g 484 t 3 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACUCC-- -----uau-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ccc--uccg- --gggugaug -UGGUGAUUC 301 AUGA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggn=n-nc-a ggu=gcggcu ccgaa----- -a---ugu-- ----uuu-gg u-----ucu- 781 gc-ac-g-u- -ug-ca=ucc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUC- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA CGAGAAAUCA UUAAACU-UU UGGGCU-CCG 1261 GGGG-GAGUA -UGGUC-A-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccagu-gA GUGa-auu-u CACUgau-gg 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -CACC-UUGG CCGAGA-GG- CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU535155 DEFINITION Sellaphora pupula v. captitata 18S rRNA gene. ACCESSION AJ535155 VERSION AJ535155.1 GI:41393009 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula f. capitata ORGANISM Sellaphora pupula f. capitata Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1777) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1777 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 464 a 341 c 465 g 506 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~CUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-C CUU--AC-UU UGAAAAC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacucc-- -----uau-- -------ggg 241 guaGUAUUUA UUAGA-Ugga a-accaac-- ccc--uccg- --gggugaug -UGGUGAUUC 301 AUGA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GUUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 gga=u-gc-a ggu=gcggcu ccgaa----- -a---ugu-- ----uuu-gg u-----ucu- 781 gc-ac-g-u- -ug-ca=ucc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAUUUCUUG GAUUUUUGGA AGACGAAUUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacg u-cucug--u cagcaccuuA YGAGAAAUCA UUAAACU-UU UGGGCUUCCG 1261 GGGG-GAGUA -UGGUC-A-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -U-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccagu-uA GUGa-auu-u CACUgau-gg 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -CACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAA-UCGU AACAAG-UUU 1981 CCGUAG-UGA ACCUGCAGAA GGAA~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544646 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain RECT-4. ACCESSION AJ544646 VERSION AJ544646.1 GI:42627623 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1718) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1718 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 444 a 327 c 458 g 489 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCC-- -----ugu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-acccac-- ccc--uccg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-gc-a gau=gcgguu ccgaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gc-au-g-u- -ug-ca=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccugu-gA GUGa-auu-u CACUgau-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUG~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544647 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain PSEUDOCAP-1. ACCESSION AJ544647 VERSION AJ544647.1 GI:42627624 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1728) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1728 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 449 a 329 c 460 g 490 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCC-- -----ugu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ccc--uccg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-gc-a gau=gcgguu ccgaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gc-au-g-u- -ug-ca=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uacc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccugu-gA GUGa-auu-u CACUgau-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544648 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain PSEUDOCAP-2. ACCESSION AJ544648 VERSION AJ544648.1 GI:42627625 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1716) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1716 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 447 a 325 c 455 g 489 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~UA 61 -GCCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCC-- -----ugu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ccc--uccg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-gc-a gau=gcgguu ccgaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gc-au-g-u- -ug-ca=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uacc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccugu-gA GUGa-auu-u CACUgau-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GG- CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544649 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain PSEUDOCAP-3. ACCESSION AJ544649 VERSION AJ544649.1 GI:42627626 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1722) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1722 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 451 a 325 c 456 g 490 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCC-- -----ugu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ccc--uccg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-gc-a gau=gcgguu ccgaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gc-au-g-u- -ug-ca=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uacc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccugu-gA GUGa-auu-u CACUgau-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GG- CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544650 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain PSEUDOCAP-4. ACCESSION AJ544650 VERSION AJ544650.1 GI:42627627 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1712) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1712 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 446 a 323 c 455 g 488 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCC-- -----ugu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- cc---uccg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Caacu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-gc-a gau=gcgguu ccgaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gc-au-g-u- -ug-ca=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-uacc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccugu-gA GUGa-auu-u CACUgau-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGGCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GG- CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544652 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain SMALL. ACCESSION AJ544652 VERSION AJ544652.1 GI:42627629 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1713) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1713 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 443 a 323 c 456 g 491 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- c----uucg- --gggugaug -uggugauUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-uc-a ggu=gcgguc -caaa----- -a---uuu-- ----uuu-gg u-----acu- 781 gc-au-g-u- -ug-ga=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gcg-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuauG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGCU-CCG 1261 GGGG-GAGUA -UGGUC-A-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -ucccgc-gA GUGa-auu-u CACUggu-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GG- CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUG~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544653 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain SM-BLCAP. ACCESSION AJ544653 VERSION AJ544653.1 GI:42627630 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1713) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1713 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 443 a 323 c 453 g 493 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggg=u-gc-a cgu=gcgguc -caaa----- -a---uuu-- ----uuu-gg u-----auu- 781 gc-au-u-g- -ug-ca=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gcg-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuauG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -ucncgcugA GUGa-auu-u CACUggu-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SPU544654 DEFINITION Sellaphora pupula partial 18S rRNA gene, strain BLUNT. ACCESSION AJ544654 VERSION AJ544654.1 GI:42627631 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora pupula ORGANISM Sellaphora pupula Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1712) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1712 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 443 a 327 c 456 g 486 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggg=g-gc-a ugu=gcgguc -caaa----- -a---ugu-- ----uuu-gg u----agcu- 781 gu-cg-u-g- -ug-ca=gcc aUCcuuggg- uggaacc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguaacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-A-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -ucccgc-gA GUGa-auu-u CACUggu-ga 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UCCC-UUGG CCGAGA-GG- CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SLA544655 DEFINITION Sellaphora laevissima partial 18S rRNA gene, strain SCOT. ACCESSION AJ544655 VERSION AJ544655.1 GI:42627632 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Sellaphora laevissima ORGANISM Sellaphora laevissima Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 1720) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..>1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 443 a 329 c 458 g 489 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-c cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-gc-a ugu=gcgguc -caaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gu-cg-c-g- -ug-ca=gcc aUCcuuggg- uggaacc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-A-C AAGGCUGAAA CUUAMAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGA 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -ucuggu-gA GUGa-auu-u CACUgau-ug 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UCCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACC~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SLA544656 DEFINITION Sellaphora laevissima 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), strain US. ACCESSION AJ544656 VERSION AJ544656.1 GI:42627633 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 26S ribosomal RNA; 26S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer 1; internal transcribed spacer 2; ITS1; ITS2. SOURCE Sellaphora laevissima ORGANISM Sellaphora laevissima Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Sellaphoraceae; Sellaphora. REFERENCE 2 (bases 1 to 2641) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1732 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 447 a 330 c 463 g 492 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~CCAUGC-A -UGU-CUAAG UAUAAAUa-u cUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Ugga a-accaac-- cc---uucg- --gggugaug -uggugauUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-gc-a ugu=gcgguc -caaa----- -a---ugu-- ----uuu-gg u-----gcu- 781 gu-cg-c-g- -ug-ca=gcc aUCcuuggg- uggaacc-ug cgu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuacG U-CUCUG--U CAGCACCUUA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-A-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -ucuggu-gA GUGa-auu-u CACUgau-ug 1561 ---gGACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGUAUUCAA 1681 CGAGUUU--- -UCCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuacu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GgAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PCF544658 DEFINITION Pinnularia cf. interrupta 18S rRNA gene, strain TE1. ACCESSION AJ544658 VERSION AJ544658.1 GI:42627635 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Pinnularia cf. interrupta ORGANISM Pinnularia cf. interrupta Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Pinnulariaceae; Pinnularia. REFERENCE 2 (bases 1 to 1761) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1761 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 465 a 335 c 460 g 501 t ORIGIN 1 ~~~~~~~~~~ ~~UAACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U CUU--AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUA AGUUAUCGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- GAUACCCU-- -----ucu-- -------aGG 241 GUAGUAUUUA UUAGA-Uaga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UUGCA-CGG Cuug---U-C CGGC-AAUGG AUCAUUCAAg 361 uu-ucuu-cC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGAAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU cuac-aaacu agGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCu-ug auaGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-gc-a ccu=gcgguc -cgaa----- -u---ugu-- ----uuu-gg u-----acu- 781 gc-gu-g-g- -ug-uu=gcc aucuuuggg- uggaacc-ug ugg-g-gca- uuagguuguu 841 uug-cag--g gga-uauc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGAUGAAUA -UACUAGCAU GGAAUAAUGA AAUAGGACUU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc a-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA GUUAGGGAUU GGCAGG--gu 1201 a-ucguuacG U-CCCUG--U CAGCACCUUA GGAGAAAUCA uuaaacU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGGUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUACCU GCU-AAAUAG -uugcgu-gA GUGu-uuu-u CACUgac-gg 1561 ---caACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAGGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUCCAA 1681 Cgagugc--- -uuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauc=agug cc--uuuacu -ggu=g=cug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUA~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PSP535154 DEFINITION Pinnularia sp. LM2002 18S rRNA gene. ACCESSION AJ535154 VERSION AJ535154.1 GI:41393008 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Pinnularia sp. LM2002 ORGANISM Pinnularia sp. LM2002 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Pinnulariaceae; Pinnularia. REFERENCE 2 (bases 1 to 1782) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1782 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 471 a 339 c 467 g 502 t 3 others ORIGIN 1 ~~~~~~~~~~ ~~UAACCUGG YKGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAWUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U CUU--AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUA AGUUAUCGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- GAUACCCU-- -----ucu-- -------aGG 241 GUAGUAUUUA UUAGA-Uaga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UUGCA-CGG Cuug---U-C CGGC-AAUGG AUCAUUCAAg 361 uu-ucuu-cC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGAAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU cuac-aaacu agGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCu-ug auaGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-gc-a ccu=gcgguc -cgaa----- -u---ugu-- ----uuu-gg u-----acu- 781 gc-gu-g-g- -ug-uu=gcc aucuuuggg- uggaacc-ug ugg-g-gca- uuagguuguu 841 uug-cag--g gga-uauc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGAUGAAUA -UACUAGCAU GGAAUAAUGA AAUAGGACUU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc a-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA GUUAGGGAUU GGCAGG--gu 1201 a-ucguuacG U-CCCUG--U CAGCACCUUA GGAGAAAUCA uuaaacU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGGUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUACCU GCU-AAAUAG -uugcgu-gA GUGu-uuu-u CACUgac-gg 1561 ---caACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAGGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUCCAA 1681 Cgagugc--- -uuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUGUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauc=agug cc--uuuacu -ggu=g=cug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUUA ACCUGCGGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NPE544657 DEFINITION Navicula pelliculosa 18S rRNA gene and ITS1, strain SAG 1050-3. ACCESSION AJ544657 VERSION AJ544657.1 GI:42627634 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; internal transcribed spacer 1; ITS1. SOURCE Navicula pelliculosa ORGANISM Navicula pelliculosa Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Navicula. REFERENCE 2 (bases 1 to 1781) AUTHORS Behnke,A. TITLE Direct Submission JOURNAL Submitted (18-FEB-2003) Behnke A., Exper Phykologie, Samml v Algenkulturen, A-v-Haller-Institut Uni Goettingen, Nikolausberger Weg 18, 37073 Goettingen, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1754 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 451 a 330 c 470 g 503 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ AUGCUUGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCGU-- -----ucu-- -------GCG 241 GUAGUAUUUA UUAGA-Ugga a-accuuc-- cgc--uucg- --gcgugaug -UGGUGAUUC 301 AUAA-UAA-g uuu--gcGGA -UCGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG UGUAU-UGGA CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGGGCCUGAG AGAUGGCCAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU UUCG-acaCG AAGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCu-ug uuaGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCAUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=g-gc-g ccu=gcgguc -ccaa----- -u---uau-- ----uug-gg u-----auu- 781 gu-cg-g-g- -cg-cu=gcc aUCcuuggg- uggaacc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGCCUU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc a-AAGGAA-U GAUU-AAUAG GGACAGUU-- GGGGCUCUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUGAGC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gu 1201 u-ucguuucG U-CUCUG--U CAGCACCUUA UGAGAAAUCA uuaaacU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCU-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -uccugc-gA GUGa-uuu-u CACUggu-gg 1561 ---ggACUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 Caagugu--- -uuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-ACUC 1801 -AUCAAGUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcc=agug uc--cucacg -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ACF535147 DEFINITION Amphora cf. proteus 18S rRNA gene, clone p386. ACCESSION AJ535147 VERSION AJ535147.1 GI:41392030 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Amphora cf. proteus ORGANISM Amphora cf. proteus Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Thalassiophysales; Catenulaceae; Amphora. REFERENCE 2 (bases 1 to 1803) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1803 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 468 a 353 c 480 g 502 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GACUA 61 AGCCAUGC-C -CGU-CUAAG UAUAAAUC-U CAU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --CA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-Uuga a-gccaac-- ccc--uuug- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g uuu--gcGGA -UCGCa-ugg cuuu---g-c caGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUUA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUUG-aaaCA AGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAAG-UCUA GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggg=c-gu-c ccu=gagguc -ca------- -cu--ugu-- ------u-gg u-----acu- 781 au-ug-g-g- -ga-ug=ucc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gcg-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AA-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUC GGCGGG--gu 1201 c-ucguuacg u-cuccg--u uagcaccuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCG-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucucgauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -ucccgc-gA GUGa-uuu-u CACUggu-ga 1561 ---gGUCUUC UUAGAGGGGC GUGCGUC--u auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAuucaa 1681 cgagugU--- --ACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAAGCC UCGGGAuugu -gacu=ggug cc--uuuacu -ggu=g=uug 1921 guc-gugaga aCUUGUCUAA ACCUUAUCAU CUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CUGUAGGUGA ACCUGCAGAA GGAUCAAGCu uggaucccgg gaaucugucg acaa // LOCUS NMI243063 DEFINITION Eolimna minima partial 18S rRNA gene, isolate SNA15. ACCESSION AJ243063 VERSION AJ243063.2 GI:10241807 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Eolimna minima. ORGANISM Eolimna minima Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Eolimna. REFERENCE 3 (bases 1 to 1751) AUTHORS Beszteri,B. TITLE Direct Submission JOURNAL Submitted (18-SEP-2000) Beszteri B., Dept. of Microbiology, Eotvos Lorand University, Budapest, Muzeum Krt. 4/A, H-1088, HUNGARY COMMENT On Sep 20, 2000 this sequence version replaced gi:5101854. MEDLINE NONE FEATURES Location/Qualifiers source 1..1751 /organism="Eolimna minima" /isolate="SNA15" /db_xref="taxon:137466" /country="Hungary" rRNA 1..1751 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1751 /gene="18S rRNA" BASE COUNT 447 a 337 c 467 g 500 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~CGCUCGUCU CAAA-GAUUA 61 AGCC-UGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacccu-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-Ugga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-CGG Gcuuu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAAGGUAG GGUCU-UGGC CUACCUUGGC UUUAACGGGU 421 AACGGAUAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA AUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAUUAG CGUAUAUUAA CGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-ug-u ugc=augguc -cca-aua-- -u----ua-- -u-guug-gg u-----gcu- 781 gu-ug-c-g- -ag-ga=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gcg-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAGGGAUU GGCAGG--gc 1201 u-ucguuaug u-cucug--u cagcaccuuA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uccagu-uA GUGa-uuu-u CACUggc-cc 1561 ---gGGCUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- -UUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcc=agug cc--uuuacu -ggu=g=uug 1921 gcu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CYLRRNAA DEFINITION Cylindrotheca closteriva 16S-like ribosomal RNA, complete. ACCESSION M87326 VERSION NONE KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Cylindrotheca closterium (sub_species Reim and Lewin) rRNA. ORGANISM Cylindrotheca closterium Eukaryota; Fungi; Chromophycota; Bacillariophyceae; Pennales; Araphidineae; Diatomaceae. REFERENCE 1 (bases 1 to 1788) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry MEDLINE NONE FEATURES Location/Qualifiers rRNA 28..1761 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 470 a 346 c 468 g 504 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U CUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------GGG 241 GUAGUAUUUA UUAGA-uuga a-accaac-- ccc--uucg- --gggugaug -uggugAUUC 301 AUAA-UAA-G Cuu--gcGGA -UCGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=guac-u ucg-gcggcc -cgu-cac-- -u----au-- -g-ugau-gg a-----gcuu 781 gc--u-g-a- -ag-uc=gcc auccuuggg- uggaucc-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAG GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGc-gcACC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGA--gu 1201 u-ucguuauG U-CUCCA--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -guugcc-uA GUGa-auu-u CACUggg-ug 1561 ---aauCUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUC--- -UACC-UUGG CCGAGA-GGC U--GGGCAAU CUUUUGAACC UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcg=aguu ccc-uucauu ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAGC~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS BLLRRNAA DEFINITION Bacillaria paxillifer 16S-like ribosomal RNA, complete. ACCESSION M87325 VERSION NONE KEYWORDS 16S-like ribosomal RNA; Protist; small subunit ribosomal RNA. SOURCE Bacillaria paxillifer (sub_species Mull Hend.) rRNA. ORGANISM Bacillaria paxillifer Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1790) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1790 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 467 a 345 c 473 g 505 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-UUGA A-accaa--- -cc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cguau--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=u-gu-c gcgugcggcg -uga-cac-- -u---uuu-- -g-uguu-au c-----gcuu 781 gc-uu-g-c- -gu-c-=gcc auccuuggg- uggaacc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGA--gu 1201 c-ucguuuuG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cuuacc-gA GUGA-auguU cacuggg-ug 1561 ---aAGCUUC UUAGAGGGAC GUgcauu-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- -AACC-UUGG CUGAGA-AGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcg=aguu ccc-uuuauu ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAGC~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NFR535164 DEFINITION Nitzschia frustulum 18S rRNA gene, clone p345. ACCESSION AJ535164 VERSION AJ535164.1 GI:41393016 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Nitzschia frustulum ORGANISM Nitzschia frustulum Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia. REFERENCE 2 (bases 1 to 1769) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1769 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 457 a 341 c 466 g 503 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAuaaAUC-u cuuu-ac-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-uuga a-accaac-- ccc--uucg- --gggugaug -ugGUGAUUC 301 AUAA-UAA-g cuu--gcG-A -UCGCA-UGG -CUUU----c gggc-gaugg acUAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=u-gu-c gcu=gcggcc -cgg-ca--- -u---ucg-- ---uggg-uc ------guuu 781 gc-ua-g-c- -gu-c-=gcc auccuuggg- uggaacu-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CSUAUUCCAU UGUCAGAGGU GAARUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCAGA--gu 1201 u-acguu=ug u-cuccg--u CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUC UUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUG-CU GCUGAAAUAG -CUugcc-gA GUGA-auuuU CACUggg-ug 1561 ---aagCUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGGC CGGUACACUG AUGCAUUCAA 1681 CGAGuuc--- -UUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcg=aguu ucc-uuuauu ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACC~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NDI535159 DEFINITION Navicula diserta 18S rRNA gene, clone p750. ACCESSION AJ535159 VERSION AJ535159.1 GI:41393012 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Navicula diserta ORGANISM Navicula diserta Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Navicula. REFERENCE 2 (bases 1 to 1768) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1768 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 460 a 342 c 464 g 502 t ORIGIN 1 ~~~~~~~~~~ ~ACAACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Uaga a-accaac-- ccc--uucg- --gggugaug -UGGUGAAUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cuuuu--G-C CGGC-GACGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGGGCCUGAG AGAUGGCCAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auaGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-ua-c guu=ggguuc =cgg=gcac- -u----ug-- uu-gucu-ga gc----aac- 781 uu--g-g-c- -gu-u-=gcc aUCcuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU UG-UcgcUAU 961 UUU-GUUGGU UUGC-GCGAU G-AGGUAA-U GAUU-AAUAG GGAUAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGG--gu 1201 c-ucguuacG U-CUCCA--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCACUGCCU GCU-AAAUAG -cccagu-gA GUGA-AUCUU CACUgac-ug 1561 --cuggCUUC UUAGAGGGAC GUGCAUU-cu aucaGAUGCA -GGAGGAUAG UGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUC--- UUACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAAUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -gacc=aguu ucc-uuuauu ggga=g=uug 1921 guu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PSP535152 DEFINITION Pseudogomphonema sp. p382 18S rRNA gene, clone p382. ACCESSION AJ535152 VERSION AJ535152.1 GI:41393007 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Pseudogomphonema sp. p382 ORGANISM Pseudogomphonema sp. p382 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae; Pseudogomphonema. REFERENCE 2 (bases 1 to 1777) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1777 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 463 a 345 c 466 g 502 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAURAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-ugga a-accaac-- ccc--uucg- --gggugaug -uggugAAUC 301 AUAA-UAA-G Cuu--gcG-a -ucgca-ugc cuucg--g-g CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-ug-u ggc=gagcuc =cgg=gcac- -u----uu-- gu-gucu-ga gc----agu- 781 uc--g-c-c- -gc-u-=gcc auccuuggg- uggaacc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-uG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACUU UU-UCGcUAU 961 UUU-GUUGGU UUGc-gcGAA G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGA--gu 1201 c-ucguuacG U-CUCCA--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UUGGGU-CCG 1261 GGGG-GAGUA -UUGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCACUGCCU GCU-AAAUAG -cccagu-gA GUGA-AUUUU CACUgac-ug 1561 --cuggCUUC UUAGAGGGAC GUGCAUU-cu aucaGAUGCA -GGAGGAUAG UGGCUAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUuaaacg UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAAUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -gacc=aguu cac-uucauu guga=g=uug 1921 guu-gugaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUG~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS PTR269501 DEFINITION Phaeodactylum tricornutum 18S rRNA gene, strain UTEX 640. ACCESSION AJ269501 VERSION AJ269501.1 GI:7529651 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Phaeodactylum tricornutum. ORGANISM Phaeodactylum tricornutum Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum. REFERENCE 2 (bases 1 to 1754) AUTHORS Beszteri,B. TITLE Direct Submission JOURNAL Submitted (04-APR-2000) Beszteri B., Dept. of Microbiology, Eotvos Lorand University of Science, Budapest, Muzeum krt. 4/a., 1088, HUNGARY MEDLINE NONE FEATURES Location/Qualifiers source 1..1754 /organism="Phaeodactylum tricornutum" /strain="UTEX 640" /db_xref="taxon:2850" rRNA 1..1754 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1754 /gene="18S rRNA" BASE COUNT 444 a 346 c 470 g 494 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~CGCUCGUCU CAAA-GAUUA 61 AGCC-UGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- -UCA-CUAUU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-UUGA A-Accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCA-UGG Cuuuu--G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU CAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu cuAGG-UCUG GCUUUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-CA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA UGU-UGC-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=g-gc-c cgg=uggcuc -ggc=cuu-- -ag--uug-- -g-ccgu-ug c-----ugu- 781 uu--u-g-g- -gu-cc=gcc aUCcuuggg- uggaauc-ag ugu-g-gca- uuaaguuguc 841 gcg-cug--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGG--gu 1201 u-ucguuacG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCU-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cccagu-gA GUGA-auu-U CACUgac-ca 1561 ---gGGCUUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUgu--U UUUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGGAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuuauu -ggu=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU CUAGAGGAAG GUGAAGACGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ABO535150 DEFINITION Achnanthes bongranii 18S rRNA gene, clone p387. ACCESSION AJ535150 VERSION AJ535150.1 GI:41392031 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Achnanthes bongranii ORGANISM Achnanthes bongranii Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Achnanthales; Achnanthaceae; Achnanthes. REFERENCE 2 (bases 1 to 1787) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1787 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 466 a 353 c 471 g 497 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAACUC-U UUU--AC-UU GAAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUG-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- GAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Uaga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g uuu--acGAA -UCGCA-UGC Cuucg--G-G CGGC-GAUGG AUCUUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU UCUG-acaCA GAGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaauuugu 721 ggc=u-gu-u gcg-ggaggc -cug=gc--- -a---cgu-- ---gcca-gc g-----cuc- 781 uu-cc-u-g- -cg-ac=gcc auccuuggg- uugaaag-ug ggu-g-gca- uuagguuguc 841 gcc-uau--g gga-agcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -GAUUAGCAU GGAAUAAUAA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGc-guacu u-AGGUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGA--gu 1201 u-ucuuuauG U-CUCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cuuggu-uA GUGa-aucuu cacuggc-ug 1561 ---aAGCUUC UUAGAGGGAC GUgcauu-cu aucaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- -UUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUCUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAUUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcu=agcu ccc-uucauu gugg=g=uug 1921 gcc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ASP535151 DEFINITION Achnanthes sp. p346 18S rRNA gene, clone p346. ACCESSION AJ535151 VERSION AJ535151.1 GI:41392032 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Achnanthes sp. p346 ORGANISM Achnanthes sp. p346 Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Achnanthales; Achnanthaceae; Achnanthes. REFERENCE 2 (bases 1 to 1787) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1787 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 468 a 351 c 470 g 498 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAACUC-U UUU--AC-UU GAAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUG-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- GAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-Uaga a-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g uuu--acGAA -UCGCA-UGC Cuucg--G-G CGGC-GAUGG AUCUUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU UCUG-acaCA GAGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaauuugu 721 ggc=u-gu-u gcg-ggaggc -cug=gc--- -a---cgu-- ---gcca-gc g-----cuu- 781 ua-cc-u-g- -cg-ac=gcc auccuuggg- uugaaag-ug ggu-g-gca- uuagguuguc 841 gcc-uau--g gga-agcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCGUUGAAUA -GAUUAGCAU GGAAUAAUAA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGc-guacu u-AGGUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGA--gu 1201 u-ucuuuauG U-CUCCA--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-U-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cuuggu-uA GUGa-aucuu cacuggc-ug 1561 ---aAGCUUC UUAGAGGGAC GUgcauu-cu aucaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- -UUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUCUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAUUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcu=agcu ccc-uucauu gugg=g=uug 1921 gcc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NPU18241 DEFINITION Nitzschia pungens f. multiseries small subunit rRNA and 5.8S rRNA genes, partial sequence. ACCESSION U18241 VERSION NONE KEYWORDS . SOURCE Nitzschia pungens f. multiseries. ORGANISM Nitzschia pungens f. multiseries Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia. REFERENCE 2 (bases 1 to 2044) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (07-DEC-1994) James R. Manhart, Biology, Texas A&M University, Department of Biology, College Station, TX 77843-3258, USA STANDARD full automatic COMMENT NCBI gi: 642528 MEDLINE NONE FEATURES Location/Qualifiers source 1..2044 /organism="Nitzschia pungens f. multiseries" /isolate="tka2" rRNA <1..1773 /product="small subunit ribosomal RNA" misc_RNA 1774..2000 /note="ITS1" /product="internal transcribed spacer" rRNA 2001..>2044 /product="5.8S rRNA" BASE COUNT 539 a 398 c 516 g 591 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAuaaaua-u uuu--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-uuga a-accaac-- ccc--uucg- --gggugaug -uggugAUUC 301 AUAA-UAA-A Auu--gcGGA -UCGCA-UGC Cuuuu--G-G CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uc uuAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=g-ug-u cca=gucggc -cu==uugcu cu----uuga gu-gauu-gc g-----cugu 781 ac--u-g-g- -=u-cu=gcc auguuuggg- uggaauc-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUGA UAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACU A-AGGUAA-U GAUU-AAGAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGA--gu 1201 u-ucguuucG U-CUCCA--U CAGCACCUUG UGAGAAAUCA U-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -CAcgca-uA GUGu-uua-u CACUgug-ua 1561 ---gugcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuc--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauu=aguu ucc-uuuauu ggaa=g=uuu 1921 guc-acgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GGAUCAUUA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS NPU18240 DEFINITION Nitzschia pungens f. pungens small subunit rRNA and 5.8S rRNA genes, partial sequence. ACCESSION U18240 VERSION NONE KEYWORDS . SOURCE Nitzschia pungens f. pungens. ORGANISM Nitzschia pungens f. pungens Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia. REFERENCE 2 (bases 1 to 2075) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (07-DEC-1994) James R. Manhart, Biology, Texas A&M University, Department of Biology, College Station, TX 77843-3258, USA STANDARD full automatic COMMENT NCBI gi: 642527 MEDLINE NONE FEATURES Location/Qualifiers source 1..2075 /organism="Nitzschia pungens f. pungens" /isolate="F310" rRNA <1..1772 /product="small subunit ribosomal RNA" misc_RNA 1773..2031 /note="ITS1" /product="internal transcribed spacer 1" rRNA 2032..>2075 /product="5.8S rRNA" BASE COUNT 549 a 412 c 518 g 596 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAuaaaua-u uuu--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauacccu-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-uuga a-accaac-- ccc--uucg- --gggugaug -uggugAUUC 301 AUAA-UAA-G Cuu--gcGGA -UCGCA-UGC Cucu---G-G CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uc uuAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=g-ug-u cca=gucggc -cu==uugcu cu----uuga gu-gauu-gc g-----cugu 781 ac--u-g-g- -=u-cu=gcc auguuuggg- uggaauc-ug ugu-g-gca- uuaaguuguc 841 gua-cug--a ggg-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUGA UAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACU A-AGGUAA-U GAUU-AAGAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGA--gu 1201 c-ucguuucg u-cuccg--u cagcaccuuG UGAGAAAUCA U-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -CAaaca-uA GUGu-uua-u cacugug-ua 1561 ---uugcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuc--- -UACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACC UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauu=aguu ucc-uuuauu ggaa=g=uuu 1921 guc-acgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCGGAA GGAUCAUUA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CCF535148 DEFINITION Cocconeis cf. molesta 18S rRNA gene, clone p800. ACCESSION AJ535148 VERSION AJ535148.1 GI:41393005 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Cocconeis cf. molesta ORGANISM Cocconeis cf. molesta Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Achnanthales; Cocconeidaceae; Cocconeis. REFERENCE 2 (bases 1 to 1795) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1795 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 466 a 367 c 469 g 493 t ORIGIN 1 ~~~~~~~cgc gacacccgGG UUGACCCUG- CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -CGU-CUAAG UAUAAAUC-U CUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAGUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCU 181 GUAGUAAUUC UAGAGCUAAU ACAUGcguc- aauaccgu-- -----ucu-- -------gcg 241 guaGUAGUUA UUAGA-CUGA A-ACCAAa-- cc---uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g cuu--gcGGA -UCGCa-ugg cuuu---g-c cggc-gauGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGGC -GGGCCU-uu cuAGG-UCUG CCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCGUA-ACG AG--acc-aa gUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUCAGA 661 GCUCCAUUAC CGUAAAUUAA CGCUUGU-UC CAGUAA-AAA GCCCCGUAAU UUGaauuugu 721 gaa=u-gc-c ugc=gguguc -ccc=----- -u---uuu-- -----gg-aa u-----acaa 781 cu--g-c-a- acu-ug=ccc aguuuuggg- uggaaa--cc ugu-gugcaa uaggguugcc 841 cug-cag--g gga-ugccca ucc-GUUUAC UGUGAAAAAA UcagcccGU- UC-AAAG-CA 901 GCC-UUAAUG CCGUUGAAUG -UAUUAGCAU GGAAUAAUAA GAUUGGACCU GG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGCAUC- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA UU-GCGAAAG 1081 CAUUUGCC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUU CCAUCGUAGU CUUAACCAUA AACUAUGCCG CCAA-GGAUU GGUggg--gu 1201 c-ucguuacg u-cucca--u cagcaccuuA UGAGAAAUCA C-AAGCU-UU UGGGUU-CCG 1261 GGGG-GAGUA AUGGUC-G-C AAGUCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCU-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gguU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -uuccgc-gA GUGa-auu-u CACUggc-uu 1561 -gggagCUUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAuucaa 1681 cgaguug-uu ucuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=agug cc--uuu--- -ggu=g=uug 1921 guu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUUCAGGA GGAUCAAGCa uu~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ETR535157 DEFINITION Encyonema triangulatum 18S rRNA gene, strain L1313. ACCESSION AJ535157 VERSION AJ535157.1 GI:41393011 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Encyonema triangulatum ORGANISM Encyonema triangulatum Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Cymbellales; Cymbellaceae; Encyonema. REFERENCE 2 (bases 1 to 1789) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1789 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 476 a 343 c 464 g 506 t ORIGIN 1 GUAUUCCGUC GACAACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -CGU-CUAAG UAUAAAUA-U AUC--AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----ucu-- -------gGG 241 GUAGUAUUUA UUAGA-UUGA A-Accaac-- ccc--ucac- --gggugaug -UGGUGAUUC 301 AUAA-UAA-g -uu--gcGAA -UCGCA-CGG Ccuu---g-c uGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGGAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGGC -GGGCCU-UA C-AGG-UCUG GCACUUGGAA UG-AG-AACA AU-UCAAA-C 601 CACUUA-UCG AGG-AUC-GA UUGAAGUGCA AGUCUGGUGC CAGCAGCCGG GGUAAUUCCA 661 GCUCAAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu=u-ga-u ugg-agaguc -cu------- -cu--uuu-- ------g-gu ------acu- 781 uu-ca-u-g- -au-ca=gcc aUCcuuggg- uggaaaccug ugu-g-gca- uuagguuguc 841 gug-cug--g gga-ugcu-c auc-AUUUAC UGUGAAAAAA UCAGCGCGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUG -UAAUAGCAU GGAAUAAUAA GAUAGGACCU UG-GuacUAU 961 UUU-GUUGGU UUGu-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GAUUGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGA--gu 1201 u-ucguaauG U-CUCCA--U CAGCACCUUA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-uc uuucuugauu cuau--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -ugcagu-uA GUGa-uuu-u CACUgac-uc 1561 ---gAGCUUC UUAGAGGGAC GUGCAUU-uu uuuaGAUGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCC--- -UACC-UUGG CUGAGA-AgC CU-GGGCAAU CUUUUGAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauc=agug cc--uuuacu -ggu=g=cug 1921 gcu-gcaaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GgAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY082977 DEFINITION Uncultured eukaryote clone RT7in48 18S ribosomal RNA gene, complete sequence. ACCESSION AY082977 VERSION NONE KEYWORDS . SOURCE uncultured eukaryote ORGANISM uncultured eukaryote Eukaryota; environmental samples. REFERENCE 2 (bases 1 to 1780) AUTHORS Amaral Zettler,L.A., Gomez,F., Zettler,E., Keenan,B.G., Amils,R. and Sogin,M.L. TITLE Direct Submission JOURNAL Submitted (08-MAR-2002) The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA MEDLINE 21996406 PUBMED 12000949 FEATURES Location/Qualifiers rRNA 1..1780 /product="18S ribosomal RNA" BASE COUNT 460 a 343 c 476 g 501 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CGAA-GAUUA 61 AGCCAUGC-A -UGU-CCAAG Uauaaauc-u uuu--ac-uu uGAA-AC-U- GCGAAUG-GC 121 UCACUAUAUA AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcgua- cauacccu-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-UGGA A-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-G CUU--GCGGA -UCGCA-CGG CUUU---G-C UGGC-GAUGG AUCAUUCAAG 361 UU-UCUU-CC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUAG-aaaCU AGGAGGUAGU GAC-AAUAAA 541 UAACGAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-gc=g ccc-guggcu -caa------ -cu--cgu-- -----uu-gg u-----gcu- 781 gu-ug-g-g- -cg-ca=gcc auccuuggg- uggaacc-ug ugg-g-gca- UUAGGUuguu 841 cug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-cG CCGUUGAAUA -GAUUAGCAU GGAAUAAUGA GAUAGGACUU UG-GUACUAU 961 UUU-GUUGGU UUGC-gcacc g-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAgggauu ggcagg--gu 1201 a-ucguuacg u-cucug--u cagcaccuuA UGAGAAAUCA UUAAACU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UUgcgu-gA GUGu-ucu-u cacugac-gg 1561 ---uaacuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAGGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUGU--- -UUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAAGCC UCGGGAuugu -gacu=ugcg cc--uuuacu -ggu=g=uag 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAC UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY082992 DEFINITION Uncultured eukaryote clone RT7iin2 18S ribosomal RNA gene, complete sequence. ACCESSION AY082992 VERSION NONE KEYWORDS . SOURCE uncultured eukaryote ORGANISM uncultured eukaryote Eukaryota; environmental samples. REFERENCE 2 (bases 1 to 1780) AUTHORS Amaral Zettler,L.A., Gomez,F., Zettler,E., Keenan,B.G., Amils,R. and Sogin,M.L. TITLE Direct Submission JOURNAL Submitted (08-MAR-2002) The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA MEDLINE 21996406 PUBMED 12000949 FEATURES Location/Qualifiers rRNA 1..1780 /product="18S ribosomal RNA" BASE COUNT 462 a 341 c 474 g 503 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG Uauaaauc-u uuu--ac-uu uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUA AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGcgua- cauacccu-- -----ucu-- -------ggg 241 guaGUAUUUA UUAGA-UGGA A-accaac-- ccc--uucg- --gggugaug -UGGUGAUUC 301 AUAA-UAA-G CUU--GCGGA -UCGCA-CGG CUUU---G-C UGGC-GAUGG ACCAUUCAAG 361 UU-UCUU-CC CUAUCAGCUU UGGACGGUAA GGUAU-UGGC UUACCGUGGC UUUAACGGGU 421 AACGGAAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CUAG-aaaCU AGGAGGUAGU GAC-AAUAAA 541 UAACGAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggc=g-gc=g ccc-guggcu -caa------ -uu--ugu-- -----uu-ga u-----gcu- 781 gu-ug-g-g- -ca-ca=gcc auccuuggg- uggaacc-ug ugg-g-gca- UUAGGUuguu 841 cug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-cG CCGUUGAAUA -GAUUAGCAU GGAAUAAUGA GAUAGGACUU UG-GUACUAU 961 UUU-GUUGGU UUGC-gcacc g-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUG CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG GUUAgggauu ggcagg--gu 1201 a-ucguuacg u-cucug--u cagcaccuuA UGAGAAAUCA UUAAACU-UU UGGGUu-ccG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UUgcgu-gA GUGu-ucu-u cacugac-gg 1561 ---uaacuUC UUAGAGGGAC GUGCACU-cu auuaGAUGCA -GGAGGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUGU--- -UUCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAGUGGUC CGGUGAAGCC UCGGGAuugu -gacu=ugcg cc--uuuacu -ggu=g=uag 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAC UUAGAGGAGG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY180016 DEFINITION Uncultured diatom clone CCW25 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION AY180016 VERSION NONE KEYWORDS . SOURCE uncultured diatom ORGANISM uncultured diatom Eukaryota; stramenopiles; Bacillariophyta; environmental samples. REFERENCE 2 (bases 1 to 1707) AUTHORS Stoeck,T. and Slava,E. TITLE Direct Submission JOURNAL Submitted (14-NOV-2002) Marine Science Center, Northeastern University, East Point, Nahant, MA 01908, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1707 /product="18S small subunit ribosomal RNA" BASE COUNT 445 a 331 c 455 g 476 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~gaa-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAguauuua uuaga-uuga a-ACCAA--- CCCC-UUC-- -GGGGUGAUG -UGGUGAUUC 301 AUAA-UAA-G CUU--GCGGA -UCGCA-UGg cuuu---g-c cggc-gAUGG AUCAUUCAAg 361 uG-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU GUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGUUUG CAGUUA-AAA AGCCCGUAGU U-GGAUUUgu 721 ggu-g-ua-c uuc-ggcggc -ccg-ucac- -u----ac-- gu-gaug-ga gc----uug- 781 cu--g-a-a- -gu-u-=gcc aUCCUuggg- uggaucc-ug ugu-g-gca- UUCAGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAG GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGAA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGa-guu 1201 u--cguuaug u-cucca--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -guugcc-ua guga--auuu cacuggg-ug 1561 -a--aucuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuc--- -uACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACC UGCAUCGUGA 1741 UAGGGAUAGA CUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcg=aguu ccc-UUCAUU ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY180014 DEFINITION Uncultured diatom clone CCW15 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION AY180014 VERSION NONE KEYWORDS . SOURCE uncultured diatom ORGANISM uncultured diatom Eukaryota; stramenopiles; Bacillariophyta; environmental samples. REFERENCE 2 (bases 1 to 1708) AUTHORS Stoeck,T. and Slava,E. TITLE Direct Submission JOURNAL Submitted (14-NOV-2002) Marine Science Center, Northeastern University, East Point, Nahant, MA 01908, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1708 /product="18S small subunit ribosomal RNA" BASE COUNT 447 a 326 c 455 g 480 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAguauuua uuaga-ugga a-ACCAA--- CCCC-UUC-- -GGGGUGAUG -UGGUGAAUC 301 AUAA-UAA-G CUU--GCGGA -UCGCA-UGg cuucg--g-c uggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-AUACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCA-UC AUUGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA -GCUCGUAGU U-GGAUUUgu 721 ggc-g-ua-c ggu-guguuc -cgg=gcac- -u----ug-- uu-gucu-ga gu----aac- 781 cu--g-c-c- -gu-u-=gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACUU GU-UUGCUAU 961 UUU-GUUGGU UUGC-gCAAA U-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC GAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUgga-guc 1201 u--cguuaug u-cucca--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCACUGCCU GCU-AAAUAG -cccagu-ga guga-aucuu cacugac-ug 1561 -cu-ggcuUC UUAGAGGGAC GUgcaUU-cu aucaGAUGCA -GGAGGAUAG UGGCUAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- -uACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUAAACC UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAAUUUG CAUUGACUAC GUCCCUGCCC UUUGUACGCA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggcc=aguu cac-UUUAUU ggga=g=uug 1921 gcu-gugaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CUGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ES18SPB DEFINITION Peridinium foliaceum endosymbiont partial 18S rRNA gene. ACCESSION Y10567 VERSION Y10567.2 GI:27262898 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Peridinium foliaceum endosymbiont ORGANISM Peridinium foliaceum endosymbiont Eukaryota; stramenopiles; Bacillariophyta. REFERENCE 3 (bases 1 to 1788) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (18-DEC-2002) Medlin L.K., Alfred-Wegener-Insitute, Dept of Biological Oceanography, Am Handelshafen, 12, D 27570 Bremerhaven, FRG COMMENT On Dec 19, 2002 this sequence version replaced gi:2832339. MEDLINE NONE FEATURES Location/Qualifiers source 1..1788 /organism="Peridinium foliaceum endosymbiont" /db_xref="taxon:92082" gene 1..1788 /gene="18S rRNA" rRNA <1..>1788 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 463 a 352 c 470 g 503 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-UUGA A-ACCAAc-- CCC--UUCG- --GGGUGAUG -uggugauuc 301 auaa-uaa-g cuu--gcGGA -UCGCA-UGC CUUU---G-g cggc-gacGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU GUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc-g-uu-c gcg-ugcggc -ccg-gcac- -u----uc-- gu-gccg-gu gc----uug- 781 cu--a-g-c- -gu-c-=gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGa-guc 1201 u--cguuuug u-cuccg--u CAGCACcuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -CUuguc-ga guga-CUUUu cacuGga-uG 1561 -a--agcuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- -uuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggug=aguu ccc-UUUAUU ggga=g=uuc 1921 auc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS ES28SPF DEFINITION Peridinium balticum endosymbiont partial 18S rRNA gene. ACCESSION Y10566 VERSION Y10566.2 GI:27262897 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Peridinium balticum endosymbiont ORGANISM Peridinium balticum endosymbiont Eukaryota; stramenopiles; Bacillariophyta. REFERENCE 3 (bases 1 to 1788) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (18-DEC-2002) Medlin L.K., Alfred-Wegener-Insitute, Dept of Biological Oceanography, Am Handelshafen, 12, D 27570 Bremerhaven, FRG COMMENT On Dec 19, 2002 this sequence version replaced gi:2832340. MEDLINE NONE FEATURES Location/Qualifiers source 1..1788 /organism="Peridinium balticum endosymbiont" /db_xref="taxon:92081" gene 1..1788 /gene="18S rRNA" rRNA <1..>1788 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 465 a 349 c 469 g 505 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-UUGA A-ACCAAc-- CCC--UUCG- --GGGUGAUG -uggugauuc 301 auaa-uaa-g cuu--gcGGA -UCGCA-UGg cuuu---g-c cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU GUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggc-a-gu-c gca-ugcggc -ccg-gcac- -u----uc-- gu-gucg-gu gu----uug- 781 cu--c-g-c- -gu-c-=gcc aUCCUuggg- uggaacc-ug ugu-g-gca- UUAGGUuguc 841 gug-cag--g gga-ugcc-c aUC-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGa-guc 1201 u--cguuuug u-cuccg--u CAGCACcuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -CUugcc-ga guga-AUUUu cacuGgg-uG 1561 -a--agcuUC UUAGAGGGAC GUGCAUU-cu auuaGAUGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuu--- -uuCC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -ggug=aauu ucc-UUUAUU ggga=g=uuc 1921 auu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY180017 DEFINITION Uncultured diatom clone CCW27 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION AY180017 VERSION NONE KEYWORDS . SOURCE uncultured diatom ORGANISM uncultured diatom Eukaryota; stramenopiles; Bacillariophyta; environmental samples. REFERENCE 2 (bases 1 to 1713) AUTHORS Stoeck,T. and Slava,E. TITLE Direct Submission JOURNAL Submitted (14-NOV-2002) Marine Science Center, Northeastern University, East Point, Nahant, MA 01908, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1713 /product="18S small subunit ribosomal RNA" BASE COUNT 451 a 337 c 458 g 467 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ug uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUACC AGUUAUAGUU -UAUUU-GAU -g-guucu-- --ug-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAACCUCGAC U----UUUUU ----GGAAGA 241 GGUGUAUUUA UUAGA-UGGA A-ACCAAUG- CGGG-GCAA- -CCCG-GAUU CAGGUGAUUC 301 AUAA-UAA-C -UU--UCGGA -UCGA--UC- -uucg----- GAUC-GAUgc AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AAACGGCUAC CACAUCCAAG 481 GAAGGCGGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCUU-UU UUAAG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUACUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUCu 721 ggu-c-gu-g gcg=aucggu -ccg=cccc- -u---cac-- gg-ggugugc ac----cug- 781 gu--c-u-c- -ua-cg=ucc auccUcggg- gagagcg-cg ucu-g-gca- UUCAGUuguc 841 ggg-uggc-g gga-uccu-c guc-AUUUAC UGUGAGCAAA -UAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Gg ccGUugAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GU-CUAU 961 UUU-GUUGGU UUGC-auucC A-AGGUAA-U GAUU-AAUAG GGAUAGUU-- GGGGGUAUU- 1021 CGUAUUCAAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGugga-cgu 1201 u--uguuaug a-cucca--u cagcaccuUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UUgagc-ga augc-CUa-g cauuggc-gg 1561 -c--aacuUC UUAGAGGGAC UUUUGGU--G ACUAACCAAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACAAUG AUACACGCAA 1681 CGAGucc--- --ACC-UUGU CCGAAA-GGU CC-GGGUAAU CUUGUAAAUG UGUAUCGUAC 1741 UAGGGAUAGA UUUUUGCAAU UCUGAAUCUU GAACGAGGAA UUCCUAGUAA AUGCG-AGUC 1801 -AUCAGCUCG CGUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUU CGGUGAAAAU CUCGGACUGC -GGCU=UGGA UGC-cuucgg gcaa=c=cag 1921 gcu-guggaa aguuguuuaa accucAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AG16SRR DEFINITION A.glacialis (CCAP 1009/1) 18S rRNA gene. ACCESSION X77701 VERSION NONE KEYWORDS 18S ribosomal RNA. SOURCE Asterionellopsis glacilia ORGANISM Asterionellopsis glacilia Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 2 (bases 1 to 1795) AUTHORS Medlin,L.K. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456315 MEDLINE NONE FEATURES Location/Qualifiers source 1..1795 /organism="Asterionellopsis glacilia" /strain="CCAP 1009/1" /note="Cast" rRNA 1..1795 /product="18S ribosomal RNA" BASE COUNT 472 a 341 c 466 g 516 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC -----UUUAC -----GAAGG 241 GUAGUAUUUA UUAGA-UUGA A-ACCAAC-- CGC--UUCG- --GCGUGAUG -uggugAUUC 301 AUAA-UAA-C Uuu--gcGAA -UCGCA-UGG Uuuaau-A-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCA-uu uuUGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-a aag=guccgc -cgu=ugc-- -u----au-- -g-cuuc-gu gu----ugg- 781 au--u-u-u- -uc-cg=ucc auccuuggg- uggaucc-ug ugu-g-gca- uucaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-cg ccuu-GAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU GG-GUAcUAU 961 UUU-GUUGGU UUGC-g-ACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-ugu 1201 u--cguuuug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggu-ga augacucguu cauugac-ua 1561 -c--agcuUC UUAGAGGGAC GUGCAUG-uu ucaaAAUGCA -GGAGGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuuU-U GUUCC-UUGG CCGAGA-GGC UG-GGG-AAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacu=guuc ugc-uuuauu gugg===ucg 1921 guu-gcgaga aCUUGUCUAA AcCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY216905 DEFINITION Talaroneis posidoniae 18S ribosomal RNA gene, partial sequence. ACCESSION AY216905 VERSION AY216905.1 GI:37961269 KEYWORDS . SOURCE Talaroneis posidoniae ORGANISM Talaroneis posidoniae Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; Triceratiales; Plagiogrammaceae; Talaroneis. REFERENCE 2 (bases 1 to 1804) AUTHORS Kooistra,W.H.C.F., Forlani,G. and de Stefano,M. TITLE Direct Submission JOURNAL Submitted (10-JAN-2003) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1804 /product="18S ribosomal RNA" BASE COUNT 471 a 345 c 476 g 512 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUA-C UGU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC U----UUCGC ----GGAAGG 241 GUAGUAUUUA UUAGA-UUGA A-ACCAAC-- CCC--UUCG- --GGGUGAUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGAA -UCGCA-UGG Cuuugu-G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCA-uu uuUGG-UCUG GCCAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-a ucg=augggc -ccg=ucac- -u----ca-- gu-gucg-gu gu----uuu- 781 au--c-g-g- -uc-cg=ucc aUCcuuggg- uggaauc-ug ugu-g-gca- uugaguuguc 841 gug-cag--g gga-uacc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccgUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GuacUAU 961 UUU-GUUGGU UUGc-gcaca ccuGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u-acguuaug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uugggu-ga auga-aucuu cauugac-ug 1561 -c--AGCUUC UUAGAGGGAC GUGCAUu-cu auuagaugca -ggAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCGGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUGU--U GUUCC-UUGG CCGAGA-GGC CU-GGGUAAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAAACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacucgguu cgc-uuuauu guga=g=uug 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY216904 DEFINITION Asterionellopsis glacialis 18S ribosomal RNA gene, partial sequence. ACCESSION AY216904 VERSION AY216904.1 GI:37961268 KEYWORDS . SOURCE Asterionellopsis glacialis ORGANISM Asterionellopsis glacialis Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Asterionellopsis. REFERENCE 2 (bases 1 to 1796) AUTHORS Kooistra,W.H.C.F., Forlani,G. and de Stefano,M. TITLE Direct Submission JOURNAL Submitted (10-JAN-2003) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1796 /product="18S ribosomal RNA" BASE COUNT 471 a 344 c 467 g 514 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACCCGAC -----UUUAC -----GAAGG 241 GUAGUAUUUA UUAGA-UUGA A-ACCAAC-- CGC--UUCG- --GCGUGAUG -uggugAUUC 301 AUAA-UAA-C Uuu--gcGAA -UCGCA-UGG Uuuaau-A-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCA-uu uuUGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-a gag=guccgc -cgu=ugc-- -u----au-- -g-cuuc-gu gu----ugg- 781 au--c-u-u- -uc-cg=ucc auccuuggg- uggaucc-ug ugu-g-gca- uucaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccuu-gaaua -UAUUAGCAU GGAAUAAUAA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGC-GCACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-ugu 1201 u--cguuuug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU GCACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggu-ga augacucguu cauugac-ua 1561 -c--agcuUC UUAGAGGGAC GUGCAUG-uu ucaaAAUGCA -GGAGGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuuU-U GUUCC-UUGG CCGAGA-GGC UG-GGG-AAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacu=guuc ugc-uuuauu gugg===ucg 1921 guu-gcgaga aCUUGUCUAA AcCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AKK18SR DEFINITION A.kariana 18S rRNA gene. ACCESSION Y10568 VERSION Y10568.1 GI:2832338 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Asterionellopsis kariana. ORGANISM Asterionellopsis kariana Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Asterionellopsis. REFERENCE 2 (bases 1 to 1796) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (15-JAN-1997) L.K. Medlin, Alfred-Wegener-Insitute, Dept of Biological Oceanography, Am Handelshafen, 12, D 27570 Bremerhaven, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..1796 /organism="Asterionellopsis kariana" /sub_species="CCAP 1009/2" /db_xref="taxon:59810" rRNA <1..>1796 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1796 /gene="18S rRNA" BASE COUNT 472 a 348 c 465 g 510 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCAUC- AAUACUCGAC -----UCAC- -----GAAGA 241 GUAGUAUUUA UUAGA-UUGA A-ACCAAC-- CGC--UUCG- --GCGUGAUG -UGGUGAUUC 301 AUAA-UAA-c uuu--gcGAA -UCGCA-UGG Uuuaac-A-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-a gag=cuccuc -cgu=ucgc- -u----ua-- gs-uu-c-gu gc----ugg- 781 ag--c-u-u- cuc-cg=ucc aUCcuuggg- uggaucc-ug ugu-g-gca- uucaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-CG CCUU-GAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GuacUAU 961 UUU-GUUGGU UUGc-gcacc g-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-ugu 1201 u--cguuuug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uugggu-ga augacucguu cauugac-ua 1561 -c--AGCUUC UUAGAGGGAC GUUCAUC-uc uuaaGAUGAA -GGAGGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- GUUCC-UUGG CCGAGA-GGC CU-GGGGAAU CUUGUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacu=guuc ugc-uuuauu gugg===ucg 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUCU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY345013 DEFINITION Convoluta convoluta diatom endosymbiont 18S ribosomal RNA gene, partial sequence. ACCESSION AY345013 VERSION AY345013.1 GI:33637945 KEYWORDS . SOURCE Convoluta convoluta diatom endosymbiont ORGANISM Convoluta convoluta diatom endosymbiont Eukaryota; stramenopiles; Bacillariophyta. REFERENCE 2 (bases 1 to 1742) AUTHORS McCoy,A.M. TITLE Direct Submission JOURNAL Submitted (17-JUL-2003) Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1742 /product="18S ribosomal RNA" BASE COUNT 461 a 340 c 456 g 485 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-C UUU--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUAUU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCU--- -----UUCG- --------GG 241 GUAGCAAAUA UUAGA-AAUA A-ACCAA--- CUCC-UUC-- -GGGGUGAUG -UGGUGAAUC 301 AUAA-UAU-U CUA--GCGAA -UCGCA-UGC Cuuuau-G-G CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU AAAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGACUUgu 721 ggu=u-ga-g gug=gccggc -cc=-acac- -u----au-- gu-gu=g-gu gc----uug- 781 gc--u-u-u- ccu-cg=ucc auccuuggg- uggaacc-gg ugu-g-gca- uugaguuguc 841 gug-ucg--g gga-ugcc-c auc-aUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-cg ccgcugaaua -uAUUAGCAU GGAAUAAUGA GAUAGGACCU CG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGG-Cgu 1201 u---guauug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -uucggc-ga guga-auuuu cacuggc-ua 1561 -g--agcuUC UUAGAGGGAC GUgcguu-cu auuagacgca -ggaagauag gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG ACGGAUUCAA 1681 CGAGUUU--- --ACC-UUGG CCGAGA-GGC cU-GGGAAAU CUUAUUAACC UUCGUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GGUC 1801 -AUCAACCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-UUUAUU ggga=g=uuu 1921 guc-gcgaga aCUUGUCuAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS CTE535142 DEFINITION Cyclophora tenuis 18S rRNA gene, clone p438. ACCESSION AJ535142 VERSION AJ535142.1 GI:41393000 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Cyclophora tenuis ORGANISM Cyclophora tenuis Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Cyclophorales; Cyclophoraceae; Cyclophora. REFERENCE 2 (bases 1 to 1773) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1773 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 473 a 333 c 463 g 502 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAAAGAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACC---- -----CUUG- ---------G 241 GUAGUAUUUA UUAGA-AAGA A-accaac-- Ccc--uucg- --gggugaug -uggugAAUC 301 AUGA-UAA-G Uuu--gcGAA -UCGCA-UGG Cuuuau-G-C CGGC-GAUAG AUCAUUCGAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AuUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAAAU 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-a uag=aucggu -ccg=acac- -a----au-- gu-gugg-gu ac----uug- 781 au--u-u-g- -uc-cg=ucc auccuuggg- uggaucg-ug ugu-g-gca- uuaaguuguc 841 gug-cag--u gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-gg ccgauGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGG-cgu 1201 u---guauug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggu-ga auga-auuuu cauugac-ua 1561 -c--agcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGUGU--- ---CC-UUGA CcGAGA-G-U -U-GGGAAAU CU-UGGAAAU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGRGAuugu -gauu=uguu acc-uucauu ggug=a=uuu 1921 ruc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS DTE535143 DEFINITION Diatoma tenue 18S rRNA gene, strain L1251. ACCESSION AJ535143 VERSION AJ535143.1 GI:41393001 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Diatoma tenue ORGANISM Diatoma tenue Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Diatoma. REFERENCE 2 (bases 1 to 1794) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1794 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 469 a 350 c 474 g 501 t ORIGIN 1 ~~~~~~~~~~ ~~~~~CCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-UUGA A-accaaC-- cgc--uucg- --gcgugaug -uggugAUUC 301 AUAA-UAA-A Uuu--gcGAA -UCGCA-UGG Cuuuac-G-C CGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AuUACCCAAU CCUG-acaCA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-a gcg=accggc -ccg-acac- -a----gu-- gu-guug-gu gc----uug- 781 gu--u-g-u- cuc-cg=ucc auccuuggg- uggagcc-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c auc-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-cg ccguuGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-ccccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggu-ga auga-auuuu cauugac-ua 1561 -c--agcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAAUCAA 1681 CGAGUGU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUGUUAACc UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCG-GGUC 1801 -AUCAACCCG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-uuuauu ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACCUGCAGAA GGAUCAAgcu ggau~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AB085829 DEFINITION Diatoma hyemalis gene for 18S ribosomal RNA, partial sequence. ACCESSION AB085829 VERSION AB085829.1 GI:21320863 KEYWORDS . SOURCE Diatoma hyemalis ORGANISM Diatoma hyemalis Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Diatoma. REFERENCE 2 (bases 1 to 1692) AUTHORS Mayama,S. TITLE Direct Submission JOURNAL Submitted (27-MAY-2002) Shigeki Mayama, Tokyo Gakugei University, Department of Biology; Nukuikita-machi 4-1-1, Koganei-shi, Tokyo 184-8501, Japan (E-mail:mayama@u-gakugei.ac.jp, Tel:81-42-329-7524, Fax:81-42-387-3992) MEDLINE NONE FEATURES Location/Qualifiers source 1..1692 /organism="Diatoma hyemalis" /strain="A-0051" /db_xref="taxon:196633" /country="Japan:Gunma, Tanbara mire" rRNA <1..1692 /product="18S ribosomal RNA" BASE COUNT 438 a 328 c 452 g 473 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-UUGA A-accaaC-- cgc--uucg- --gcgugaug -uggugauuc 301 auaa-uaa-a uga--gcGAA -UCGCA-UGG CUUUAC-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAAUAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggu-u-gg-a gcg=acuggu -ccu=Ucac- -a----gu-- gu-guug-gu gc----uug- 781 gu--u-g-u- cuc-cg=ucc auccuuggg- uggaacc-ug ugu-g-gca- UUAAGUuguc 841 gug-uag--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGGUAA-U GAUU-AAUAG GGCCAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-ccccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC --GCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUGCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgugu-ca auga-CUUUu cauuGac-gG 1561 -c--agcuUC UUAGAGGGAC GUGCGUU-cu uuuaGACGCA -GGAAGAAAG GGGCAAUAAC 1621 AGGUCAGUCG AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCC--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUGUUAACC UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCG-GGUC 1801 -AUCAACCCG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAG-C UCGGGAUUGU -GAUG=AGUN UCC-UUUAUU ggga=g=uuc 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525655 DEFINITION Grammatophora oceanica small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525655 VERSION NONE KEYWORDS . SOURCE Grammatophora oceanica ORGANISM Grammatophora oceanica Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Striatellaceae; Grammatophora. REFERENCE 2 (bases 1 to 1742) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1742 /product="small subunit ribosomal RNA" BASE COUNT 460 a 332 c 453 g 497 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CAU--ac-uu uGAA-AC-U- CGGAAUG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-CUCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-UAGA A-accaaC-- ucc--uucg- --ggaugaug -uggugauuc 301 auaa-uaa-u cuu--gcGAA -CUGCA-UGG Cuuugc-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGAAUCGUAU GGUAU-UGGC UUACGAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGUCU-UU GUAGA-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggu-u-gg-a gcg=accggu -cca=Gcac- -a----gu-- gu-gcag-gu ac----uug- 781 gu--u-g-u- cuc-cguucc auccuuggg- ggaaauu-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA AUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGGCUU CG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AAGUAA-U GAUU-AAUAG G-ACAGUU-- GGGGGCAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUU GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUGCC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGGGAUU GGuggg-cgu 1201 u---guauug a-ccuca--u cagcaccuuA UGUGAAA-UA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUCACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UCcgcc-ga auga-UUCUu cauuGgg-uA 1561 -g--ggcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUCUUAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-UUUAUU ggga=g=uuc 1921 guc-gcgaga aCUUGUCUGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525656 DEFINITION Grammatophora gibberula small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525656 VERSION NONE KEYWORDS . SOURCE Grammatophora gibberula ORGANISM Grammatophora gibberula Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Striatellaceae; Grammatophora. REFERENCE 2 (bases 1 to 1743) AUTHORS Kooistra,W.H.C.F. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1743 /product="small subunit ribosomal RNA" BASE COUNT 461 a 335 c 456 g 491 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CAU--ac-uu uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----CCU-- -------GGG 241 GUAGUAUUUA UUAGA-UAGA A-accaaC-- ucc--uucg- --ggaugaug -uggugauuC 301 Auaa-uaa-C CUU--gcGAA -UCGCA-CGG Cuucgc-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGAAUCGUAU GGUAU-UGGC UUACGAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCAUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGUCU-UU GUAGA-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggu-u-gg-a gcg=accggu -cca=Gcac- -a----gu-- gu-gcag-gu ac----uug- 781 gu--u-g-u- cuc-cg=ucc auccuuggg- gggaauu-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA AUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGGCUU CG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGCAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUGCC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGGGAUU GGuggg-cgu 1201 u---guauug a-ccuca--u cagcaccuuA UGUGAAAAUA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUCACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UCcgcc-ga auga-UUCUu cauuGgg-uA 1561 -g--ggcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUCCUAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-UUUAUU ggga=g=uuu 1921 guc-gcgaga aCUUGUCUGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY216906 DEFINITION Grammatophora marina 18S ribosomal RNA gene, partial sequence. ACCESSION AY216906 VERSION AY216906.1 GI:37961270 KEYWORDS . SOURCE Grammatophora marina ORGANISM Grammatophora marina Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Striatellaceae; Grammatophora. REFERENCE 2 (bases 1 to 1787) AUTHORS Kooistra,W.H.C.F., Forlani,G. and de Stefano,M. TITLE Direct Submission JOURNAL Submitted (10-JAN-2003) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1787 /product="18S ribosomal RNA" BASE COUNT 474 a 341 c 467 g 504 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CAU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-ucccu-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----CCU-- -------GGG 241 GUAGUAUUUA UUAGA-UAGA A-accaaC-- ucc--uucg- --ggaugaug -uggugauuc 301 auaa-uaa-u cuu--gcGAA -UCGCA-UGG CUUUGC-G-C CGGC-GAUGG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGAAUCGUAU GGUAU-UGGC UUACGAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCAUGAG AAACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGUCU-UU GUAKA-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-a gcg=accggu -cca=gcac- -A----gu-- gu-gcag-gu ac----uug- 781 gu--u-g-u- cuc-cg=ucc auccuuggg- gggaauu-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA AUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGGCUU CG-GUACUAU 961 UUU-GUUGGU UUGC-GCACC G-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGCAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUGCC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCA ACUAGGGAUU GGUGGG-CGU 1201 U---GUAUUG A-CCUCA--U CAGCACCUUA UGUGAAA-UA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUCACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--gggU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UCCGCC-Ga auga-uucuu cauuggg-ua 1561 -g--ggcuuc uuagagggac gugcguu-cu auuagacgca -ggaagauag gggcaauaac 1621 aggucugu-g augccCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--- --ACC-UUGG CcGAGA-GGC CU-GGGAAAU CUUCUUAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU CAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUAcACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAUugu -gaug=aguu -cc-uuuauu GGGA=G=UUU 1921 GUC-GCGAGA ACUUGUCUGA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525661 DEFINITION Licmophora juergensii small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525661 VERSION NONE KEYWORDS . SOURCE Licmophora juergensii ORGANISM Licmophora juergensii Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Licmophoraceae; Licmophora. REFERENCE 2 (bases 1 to 1746) AUTHORS Kooistra,W.H.C.F. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1746 /product="small subunit ribosomal RNA" BASE COUNT 465 a 336 c 457 g 488 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-C UUU--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-AAGA A-accaaC-- ucc--uucg- --ggaugaug -uggugaauc 301 auga-uaa-g uuu--gcGAA -UCGCA-UGG CuuucauG-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU AAAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUAA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggu-u-gg-a gug=gucggu -ccg=acac- -a----gu-- gu-gugg-gu ac----uug- 781 ac--u-u-u- cuc-cg=ucc auccuuggg- uggaauc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-AUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGg-cgu 1201 u---guauug a-cuccg--u CAGCACcuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -CUgggu-ga auga-AUUUu cauuGac-uA 1561 -c--agcuUC UUAGAGGGAC GUgcguuucu auuagacGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACUCAA 1681 CGAGUGU--- --ACC-UUGA cCGAGA-GGC CU-GGGAAAU CUUGUUAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GGUC 1801 -AUCAACCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-UUCAUU ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525660 DEFINITION Rhabdonema sp. LM-2002 small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525660 VERSION NONE KEYWORDS . SOURCE Rhabdonema sp. LM-2002 ORGANISM Rhabdonema sp. LM-2002 Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Rhabdonemataceae; Rhabdonema. REFERENCE 2 (bases 1 to 1739) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1739 /product="small subunit ribosomal RNA" BASE COUNT 457 a 330 c 459 g 491 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CGU--ac-uu uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACC-U-- -----UCU-- --------GG 241 GUAGUAUUUA UUAGA-UUGA A-aucaaC-- ccc--uucg- --gggugaug -uggugauuc 301 auaa-uaa-g uuu--gcGAA -GUGCA-UGG Cuuu---G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UGUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGAGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU GUAGG-UCUG GCAAUUGGAA UG-AG-ARCA AY-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC -GUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAAUUUGu 721 ggc-u-gu-g gc-=gucggu -acg=gcac- -a----gu-- gu-gucg-ua ac----uug- 781 ac--u-g-u- cug-cg=auc auccuuggg- uggaauc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGg-cgu 1201 u---guauug a-cuccg--u CAGCACcuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggu-ga augauucguu cauugac-ug 1561 -c--agcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUAU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUUUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGCAuugu -gaug=auug ccc-UUUAUU gggu=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525657 DEFINITION Asterionella formosa small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525657 VERSION NONE KEYWORDS . SOURCE Asterionella formosa ORGANISM Asterionella formosa Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Asterionella. REFERENCE 2 (bases 1 to 1742) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1742 /product="small subunit ribosomal RNA" BASE COUNT 457 a 339 c 454 g 492 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACC-U UUU--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-UUGA A-accaaC-- cgc--uucg- --gcgugaug -uggugauuc 301 auaa-uaa-a uua--gcGAA -UCGCA-UGG CUUUAC-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GACCAAUAAA 541 UAACAAUGCC -GGGCCU-UU AAAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggu-u-gg-a gca=acgugc -ccu=uca-- -c---uug-- -u-guug-gu gc----uug- 781 uu--u-g-u- cuc-cg=ucc auccuuggg- uggaacc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 G-c-uua-cg ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCA-CGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-ccccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCG-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAG CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggu-ga auga-AUUUu cauuGac-uA 1561 -c--agcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUGUUAACC UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCG-GGUC 1801 -AUCAACCCG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-UUUAUU ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS RB18SRR DEFINITION R.belgica (Grun.) 18S rRNA gene. ACCESSION X77703 VERSION NONE KEYWORDS 18S ribosomal RNA. SOURCE Rhaphoneis belgicae ORGANISM Rhaphoneis belgicae Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 2 (bases 1 to 1790) AUTHORS Medlin,L.K. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456357 MEDLINE NONE FEATURES Location/Qualifiers source 1..1790 /organism="Rhaphoneis belgicae" /note="(Grun.) Grun" rRNA 1..1790 /product="18 S ribosomal RNA" BASE COUNT 469 a 348 c 470 g 501 t 2 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CAU--AC-UU UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAC ACAUGCAUC- AAUACCCGAC U----UUC-- ----GGAAGG 241 GUAGUAUUUA UUAGA-UUGA G-ACCAAC-- CCC--UUCG- --GGGUGAUG -UGGUGAGUC 301 AUAA-UAA-C UUU--GCGAA -UUGCA-UGG Cguau--G-C CGGC-AAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGC 421 AACGGAGGAU UAGGGUUCGG UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUSCAAG 481 GAAGGCAGCA GGUCCGC-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UUS AGG-AUC-AA UUGGAGGGCA AGUCUUGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ugauuugu 721 gga-c-gg-a gug=gcuggc -cuc=a---- -c---uug-- ----uga-gc gc----ugu- 781 gc--c-u-u- uuc-ca=ucc auccuuggg- uggaauc-ug ugu-g-gca- uugaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uug-ca ccuu-GAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU GG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUGG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGG-cgu 1201 u--cguuuug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUG -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUUCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUaG -UUgggc-ga auga--uuuu cauuggu-ua 1561 -c--agcuUC UUAGAGGGAC GUGCAUU-uc auaaGAUGCA -GGAGGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUCC--- -UUCC-UUGG CCGAGA-GGC CU-GGGGAAU CUUUUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA AUGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gacc=aauu ccc-uucauu gggg=a=uug 1921 guc-acgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525659 DEFINITION Staurosira construens small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525659 VERSION NONE KEYWORDS . SOURCE Staurosira construens ORGANISM Staurosira construens Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Staurosira. REFERENCE 2 (bases 1 to 1747) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1747 /product="small subunit ribosomal RNA" BASE COUNT 463 a 337 c 466 g 481 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UGU--ac-uu uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACG UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCU-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-AAGA A-accaacca acc--uucg- --gggugaug -uggugauuc 301 auaa-uaa-- aaa--ucGGA CUCGCA-CGG Cuuuu--G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CAAG-AAACU UGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UC UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGGAGG U-GGAUUUGu 721 ggg-u-gg-a ggu=gcuggc -ccgcacgc- -u----uu-- gc-gugg-gu gu----ugg- 781 cu--c-a-c- cuc-cg=ucc acccuuggg- uggaauc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAGCCA 901 GGC-uua-cg ccGUugAAUA -UGUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGAUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGuggg-cgu 1201 u---guauug a-cucca--u cagcaccuUA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGGC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGGUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgagc-ga guga-AUGUu cacuGgc-uA 1561 -c--agcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUGU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUAUUAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UGCCUAGUAA ACCCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -caug=aguu ucc-UUCAUU ggga=g=uuu 1921 gug-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525658 DEFINITION Nanofrustulum shiloi small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525658 VERSION NONE KEYWORDS . SOURCE Nanofrustulum shiloi ORGANISM Nanofrustulum shiloi Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Nanofrustulum. REFERENCE 2 (bases 1 to 1741) AUTHORS Kooistra,W.H.C.F. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1741 /product="small subunit ribosomal RNA" BASE COUNT 456 a 344 c 467 g 473 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UGU--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUUUAAUC -UACUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAUACCCC-- -----UCU-- -------GGG 241 GUAGUAUUUA UUAGA-AAGA A-accaaC-- ucc--uucg- --ggaugaug -uggugaauc 301 auaa-uaa-g cuu--gcGGA -UCGCA-CGG Cuuuu--G-C UGGC-GAUGG AUCAUUCgag 361 aU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UC UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 ggg-k-gg-a gcg=agcguc -ccg=acgc- -u----ca-- gc-gugg-gu g-----agg- 781 uu--c-g-u- cuc-cg=ucc auccuuggg- uggaauc-cg cgu-g-gca- uugaguuguc 841 gug-cgg--g gga-ugcc-c aUC-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU GG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACGA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGUGGG-Cgu 1201 u---uguaug a-cccca--u cagcaccuuA GGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAACC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACACAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUGU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUgggc-g- auga-auguu cauuggc-ug 1561 -c--agcuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGUUACACUG AUGCACUCAA 1681 CGAGUCU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CUUGUUAACA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugc -gaug=aguu ucc-uucauu ggga=g=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS TSP535140 DEFINITION Thalassionema sp. p474 18S rRNA gene, clone p474. ACCESSION AJ535140 VERSION AJ535140.1 GI:41393053 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Thalassionema sp. p474 ORGANISM Thalassionema sp. p474 Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Thalassionemataceae; Thalassionema. REFERENCE 2 (bases 1 to 1791) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1791 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 480 a 354 c 457 g 500 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAug-u uuu--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AA-UCCCU-- --UA-CUAAU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----CUUG- ---------G 241 GUGGCAAUUA UUAGA-AAUA A-accaac-- ucc--uucg- --ggauguuu -uggugaauc 301 auaa-uaa-c cuu--guGAA -UCGCA-CAG Cguca--G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU AUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-CUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AUU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GAACUUgu 721 gguuu-gu-u ugg-cuuggu -ccg=acgca -u----ca-u gc-guug-gu ac----cug- 781 ag--c-c-a- -ug-cu=ccc auccuuggg- uggaacc-ug ugu-g-gca- uuagGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguugaaua -uAUUAGCAU GGAAUAAUAA GAUAGGACUU UA-GUACUAU 961 UUU-GUUGGU UUGU-gCACU A-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUUC 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA CGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGgu-cgu 1201 u---guauuG A-CCCCG--U CAGCACCUUA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCG-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UCGUG GGCCGACUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UCuugc-ua auga-UUCUu cauuGguauc 1561 -gu-gacuUC UUAGAGGGAC GUgcguu-cu auuaaacgca -ggaagauag gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGAAUGCAA 1681 CGAGUcu--- --ACC-UUGG CCGAGA-GGC CC-GGGAAAU CU-GUGAACg uuCAUCGUGA 1741 UAGGGAUuga ucaUUGCAAU UAUUGAUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguc ucc-UUUAUU gggg=a=uuu 1921 guu-ucgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCguag-uga accugcagaa ggaucaagc~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525666 DEFINITION Striatella unipunctata small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525666 VERSION NONE KEYWORDS . SOURCE Striatella unipunctata ORGANISM Striatella unipunctata Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Striatellaceae; Striatella. REFERENCE 2 (bases 1 to 1725) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1725 /product="small subunit ribosomal RNA" BASE COUNT 459 a 317 c 450 g 498 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--ac-uu uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAG AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUa- AAUGCCCu-- -----UCU-- -------GGG 241 GUUGUAUUUA UUAGA-UGGA A-ACC----- UUC--AAUC- --GAA----- -uggugauuc 301 auaa-uaa-g uuu--gcGAA -UCGCA-UGG Cuucg--G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UUGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGUC -GGGCCU-UU AUUGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGU-AUC-CA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaaauuuu 721 gau-u-gu-a gcg=gucagu -cuc=ac--- -a---aca-- ---guga-gu gc----uag- 781 au-gu-g-c- -ug-ug=guc auguuucgu- uggaacg-ug ugu-g-gca- uugaguuguc 841 gug-cau--g gga-agac-g aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCA GG-GUACUAU 961 UUU-GUUGGU UUGU-gCACC U-UGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGAUAUU- 1021 CGUAUUGCGG UGUCAGAGGU GAAAUUCUUG GAUUUCCGCA AGACGAGCUA CU-GCGAAAG 1081 CAUUUAUC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCAgg-gug 1201 u--guuuaug c-cucug--u cagcaccuuA GGAGAAAUCA U-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUCAAA CUUAAAGACA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AACC-GAG ACCCC-G-CU GCU-AAAUAG -Augguc-ua guga--uuuu cacugga-aa 1561 -c--aucuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUUG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUG---- ---CC-UUCA CCGAGA-G-- -U-GGGAAAU CU-YGGAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUCUUGUAAU UUUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=acuu uuc-UUCAUU gaga=g=guc 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525654 DEFINITION Hyalosira delicatula small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525654 VERSION NONE KEYWORDS . SOURCE Hyalosira delicatula ORGANISM Hyalosira delicatula Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Striatellaceae; Hyalosira. REFERENCE 2 (bases 1 to 1735) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1735 /product="small subunit ribosomal RNA" BASE COUNT 454 a 343 c 453 g 485 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CUU--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUCAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAcAcc---- ----CUUUG- ---------G 241 GUGGUAUUUA UUAGA-UAGA A-accaaC-- ucc--uucg- --ggaugaug -uggugaauc 301 auaa-uaa-g cuu--gcGA- -UCGCA-UGG Cuuugu-G-C CGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGAAUCGUAA GGUAU-UGGC UUACGAUGGC UUUAACGGGU 421 AACGGGGAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCAU-U- cuAUG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA GUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCACUAG CGUAUACCAA UUU-UGC-UG CAGUUG-AAA AGCUCGUAGU C-GGAUUUGu 721 gcg-g-ug-a guc=gucggu -ucg=guac- -u----gu-- gu-accg-ag ac----cag- 781 au--g-a-c- cuc-ac=ugc auccucgag- uggaacu-ug ugu-g-gca- UUAAGUuguc 841 gug-caa--g gga-ugcu-c gUC-UUUUAC UGUGAAUAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Cg ccGUugAAUA -UGCUAGCAU GGAAUAAUGA GAUAGGACUU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC A-AAGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGCAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUGCC-A AG-GA-UGUU UUCAUUGAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCGUCGUAGU CUUAACCAUA AACCAUGCCA ACUAGGGAUU GGCugg-cgu 1201 u---guuuug a-ccuca--u cagcaccuuA UGUGAAAU-A --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUCACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG AC-gcuGCCU GCU-AAAUAa -uacgcg-ga auga-cuuUu cau-gag-ua 1561 -g--uguuUC UUAGAGGGAC GUgcguu-cu auuaGACGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUU---- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CU-UCGAAUG UGCAUCGUGA 1741 UAGGGAUAGA UUCUUGCAAU UUUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugu -gaug=aguu ucc-UUCAUU gggg=aucuu 1921 guc-gcgaga aCCUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS FSP535141 DEFINITION Fragilaria sp. p437 18S rRNA gene, clone p437. ACCESSION AJ535141 VERSION AJ535141.1 GI:41392999 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Fragilaria sp. p437 ORGANISM Fragilaria sp. p437 Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Fragilaria. REFERENCE 2 (bases 1 to 1779) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1779 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 468 a 337 c 470 g 501 t 3 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U Uuu--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AUGA A-ACCAAC-- cuc=gcuug- cggggugaug -uggugAAUC 301 AUAA-UAA-G Uuu--gcGAA -YYGCA-CGG Cuuuau-G-C UGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-g uccugucggu -ccg=gcac- -a----uu-- gu-gcgg-gu ac----uug- 781 au==gug-a- -cu-cg=ucc auccuuggg- uggaauc-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCGUGCCU GCU-AAAUAG -UUgggu-ua auga-auuuu cauuggc-ua 1561 -c--aacuUC UUAGAGGGAC GUGCGUU-uu auaaAACGCA -GGAAGAUAC GGGCAAAAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGUGU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CU-GUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauu=aguu ucc-uuuauu gggr=a=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGC~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS FCF535190 DEFINITION Fragilaria cf. islandica 18S rRNA gene, clone p362. ACCESSION AJ535190 VERSION AJ535190.1 GI:41393034 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Fragilaria cf. islandica ORGANISM Fragilaria cf. islandica Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Fragilaria. REFERENCE 2 (bases 1 to 1789) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1789 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 475 a 339 c 472 g 502 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AUUA A-accaac-- cucugcuug- cagggugaug -uggugAAUC 301 AUAA-UAA-G Uuu--gcGAA -UCGCA-CGG Cuuuau-G-C UGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-g ucy=gucggu -ccg=gcac- -a----uu-- gu-gcgg-gu ac----uug- 781 au==g=g-a- -cu-cg=ucc auccuuggg- uggaauc-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCGUGCCU GCU-AAAUAG -UCgggu-ua auga-auuuu cauuggc-ua 1561 -c--aacuUC UUAGAGGGAC GUGCGUU-uu auaaAACGCA -GGAAGAUAC GGGCAAAAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGUUU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CU-GUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-uuuauu gggg=a=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS FS18SRR DEFINITION F.striatula (CCAP 1029/18) 18S rRNA gene. ACCESSION X77704 VERSION NONE KEYWORDS 18S ribosomal RNA. SOURCE Fragilaria striatula ORGANISM Fragilaria striatula Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 2 (bases 1 to 1789) AUTHORS Medlin,L.K. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456331 MEDLINE NONE FEATURES Location/Qualifiers source 1..1789 /organism="Fragilaria striatula" /strain="CCAP 1029/18" /note="Lyngb" rRNA 1..1789 /product="18S ribosomal RNA" BASE COUNT 476 a 339 c 471 g 502 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U Uuu--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AUUA A-ACCAAC-- cucugcuug- cagggugaug -uggugAAUC 301 AUAA-UAA-G Uuu--gcGAA -UCGCA-CGG Cuuuau-G-C UGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AYUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu auAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-gg-g ucc=guuggu -ccg=gcac- -a----uu-- gu-gcgg-gu ac----uug- 781 au==g=g-a- -cu-cg=ucc auccuuggg- uggaauc-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCAAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCGUGCCU GCU-AAAUAG -UCgggu-ua auga-auuuu cauuggc-ua 1561 -c--aacuUC UUAGAGGGAC GUGCGUU-uu auaaAACGCA -GGAAGAUAC GGGCAAAAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGUUU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CU-GUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-uuuauu gggg=a=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY216907 DEFINITION Tabularia tabulata 18S ribosomal RNA gene, partial sequence. ACCESSION AY216907 VERSION AY216907.1 GI:37961271 KEYWORDS . SOURCE Tabularia tabulata ORGANISM Tabularia tabulata Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Tabularia. REFERENCE 2 (bases 1 to 1785) AUTHORS Kooistra,W.H.C.F., Forlani,G. and de Stefano,M. TITLE Direct Submission JOURNAL Submitted (10-JAN-2003) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1785 /product="18S ribosomal RNA" BASE COUNT 473 a 341 c 474 g 497 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AAGA A-ACCAAC-- ccc--uucg- --gggugaug -uggugAAUC 301 AUAA-UAA-G Uuu--gcGAA -UCGCA-UGG Cuuuau-G-C UGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu aaAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-u-ga-g cug=uccggu -ccg=acac- -u---uuu-- gu-gugg-gu ac----uug- 781 ga--c-g-g- -cu-cg=ucc auccuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-UUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-ccccg--u cagcaccuuA UGAGAAAUCA A-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UGgggc-ua auga-auuuu cauuggc-ua 1561 -c--aacuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGUGU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CU-GUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu -cc-uuuauu gggg=a=uuc 1921 guu-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS FVI535137 DEFINITION Fragilariforma virescens 18S rRNA gene, strain V18. ACCESSION AJ535137 VERSION AJ535137.1 GI:41392996 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Fragilariforma virescens ORGANISM Fragilariforma virescens Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Fragilariforma. REFERENCE 2 (bases 1 to 1790) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1790 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 467 a 347 c 479 g 497 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CUU--AC-UU UGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CCACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AAGA A-ACCAAC-- ccc--uucg- --gggugaug -uggugAAUC 301 AUAA-UAA-G Uuu--gcGAA cucgca-cgg cuuuau-g-C UGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGGUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu acAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GgUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 gga-u-gg-g cag=ucuggu -ucg=cccu- -u----uu-- gg-gcgg-gu ac----uug- 781 gg--c-a-g- -cu-cg=ucc auccuuggg- uggaauc-ug ugu-g-gca- uuaaguuguc 841 gug-cag--g gga-ugcc-c aucucUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u--guaugug a-cuccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCU-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGGUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UCgggu-ua auga-uuuuu cauuggc-ua 1561 -c--gucuUC UUAGAGGGAC GUGCGUU-cu auaaGACGCA -GGAGGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGUGU--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CU-GUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauu=uguc ucc-uuuauu gggg=a=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAAgc~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SUL535139 DEFINITION Synedra ulna 18S rRNA gene, strain L32. ACCESSION AJ535139 VERSION AJ535139.1 GI:41392998 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Synedra ulna ORGANISM Synedra ulna Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Synedra. REFERENCE 2 (bases 1 to 1784) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1784 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 474 a 340 c 467 g 503 t ORIGIN 1 ~~~~~~~~~~ ~UUACACUGG UUGAGCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U UUU--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AAGA A-accaaC-- ccc--uucg- --gggugaug -uggugaauc 301 auaa-uaa-g uuu--gcGAA -UCGCA-CGG Cuuu---G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU CUAGG-UCUG GCAAUUGGAA UG-AG-AACA AUUUUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUAAAAA AGCUCGUAGU U-GGAUUUgu 721 gaa-u-gg-g uug-agggau -gcg=ucc-- -u---cau-- -g-gucg-cg au----ccu- 781 uu--c-g-g- -cu-ug=uuc aucuuuggu- uggaauc-ug cgu-g-gca- UUAAGUuguc 841 gug-cag--g gga-uggc-c aUC-gUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUUCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGAA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u----uuuug a-ccccg--u CAGCACcuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCU-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UGcgau-ga auga-uuuuu cauugau-ua 1561 -g--cacuUC UUAGAGGGAC GUgcguu-cu auaaGACGCA -GGAAGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGUGU--- --ACC-UUGG CCGAGA-ggc cu-GGGAAAU CU-GUGAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGC- UCGGGAuugu -gacu=uguc ucc-uuuacu gggg=g=cuu 1921 guu-acaaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUU- 1981 Ccguag-uga accugcagaa ggaucaagc~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525662 DEFINITION Fragilaria crotonensis small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525662 VERSION NONE KEYWORDS . SOURCE Fragilaria crotonensis ORGANISM Fragilaria crotonensis Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Fragilaria. REFERENCE 2 (bases 1 to 1741) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1741 /product="small subunit ribosomal RNA" BASE COUNT 460 a 329 c 458 g 494 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCCCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CUU--ac-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AAGA A-accaaC-- ccc--uucg- --gggugaug -uggugaauc 301 auaa-uaa-g uuu--gcGAA -UCGCA-UGG Cuuuau-G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UA UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUGu 721 gga-a-ug-g cgu=gccggu -gcg=auc-- -u---ucu-- -g-aucg-ug Ac----uug- 781 gu--u-u-g- ccu-gu=ucc aUCCUuggg- uggaauc-ug ugu-g-gca- UUAAGUuguc 841 gug-cag--g gga-ugcc-c aUCuuUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-Ug ccGUugAAUA -UAUUAGCAU GGAAUAAUGA GAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACC G-AGgUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGUccgu 1201 u---guauug a-cuccg--u CAGCACcuuA UGAGAAAUCA C-AAGUC-UU UGGGuU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCU-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCGCUGCCU GCU-AAAUAG -UUuggu-ga auga-uuuuu cauugac-ug 1561 -a--agcuUC UUAGAGGGAC GUgcguu-cu auaaGACGCA -GGAGGAUAG CGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGUGU--- --ACC-UUGA CCGAGA-GGU CU-GGGAAAU CU-GUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gauu=aguc ucc-UUUAUU gggg=a=uua 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS TN18SRR DEFINITION T.nitzschioides (CCAP 1084/1) 18S rRNA gene. ACCESSION X77702 VERSION NONE KEYWORDS 18S ribosomal RNA. SOURCE Thalassionema nitzschioides ORGANISM Thalassionema nitzschioides Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 2 (bases 1 to 1782) AUTHORS Medlin,L.K. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456372 MEDLINE NONE FEATURES Location/Qualifiers source 1..1782 /organism="Thalassionema nitzschioides" /strain="CCAP 1084/1" /note="(Grun.). V.H" rRNA 1..1782 /product="18S ribosomal RNA" BASE COUNT 472 a 338 c 468 g 504 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CUU--AC-CU UUAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAAUU -UAUUU-GAU AG-UCCCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- A---CC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-AAGA A-ACCAAC-- ucc--uucg- --ggaugaug -uggugAAUC 301 AUAA-UAA-G Uuu--gcGAA -UCGCA-CGG Cuuugu-g-C UGGC-GAUGG AUCAUUCAAg 361 uu-ucug-cC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-uu guAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC G-UAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 gga-u-uucg cgg=uucggu ==cg-cacu- -a----au-- ug-ugug==u ac----aug- 781 ag--u-c-g- -ug-ag=ucc auccuuggg- uggaauc-ug ugu-g-gca- uuagguuguc 841 gug-cag--g gga-ugcc-c auc-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-uua-ug ccguuGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU UG-GUAcUAU 961 UUU-GUUGGU UUGC-gcACC G-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGU-cgu 1201 u---guauug a-ccccg--u cagcaccuuA UGAGAAAUCA C-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -UUuugc-ua auga-uuuuu cauugguauc 1561 -gu-aacuUC UUAGAGGGAC GUGCGUU-cu auuaGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUGCAA 1681 CGAGugu--- --ACC-UUGG CCGAGA-GGC CU-GGGAAAU CU-GUGAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=aguu ucc-uuuauu gggg=a=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS SSP535138 DEFINITION Synedra sp. p517 18S rRNA gene, clone p517. ACCESSION AJ535138 VERSION AJ535138.1 GI:41392997 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Synedra sp. p517 ORGANISM Synedra sp. p517 Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Synedra. REFERENCE 2 (bases 1 to 1791) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (29-NOV-2002) Medlin L.K., Dept of Biology, Oceanography, Alfred Wegener Institute, Am Handelshafen 12, D-27570 Bremerhaven, GERMANY MEDLINE NONE FEATURES Location/Qualifiers rRNA 1..1791 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 462 a 348 c 476 g 504 t 1 others ORIGIN 1 ~~~~~~~~~~ ~~~~~CCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAAUC-U CUU--cc-uu uGAA-AC-U- GCGAACG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-CCCCU-- --UA-CUCCU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- GACACC---- -----UUUG- ---------G 241 GUGGUAUUUA UUAGA-CUGA A-Accaac-- ccc--uucg- --gggugaug -uggugaauc 301 auaa-uaa-g uuu--gcGAA -UCGCA-GGG Cuuuau-G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC UUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU AAAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGG-ACC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUAAAAA AGCUCGUAGU U-GGAUUUgu 721 ggu=u-gg-g cug=uccggu -ccu-ucgc- -u----ca-- gc-guug-ga uc----cug- 781 gc--c-g-g- -uc-ug=auc auccuuggg- uggaauc-ug ugu-g-gca- uuagGUuguc 841 gug-cag--g gga-ugcc-c aUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 AGC-UUA-GG CUGUUGAAUA -UAUUAGCAU GGAAUAAUAA GAUAGGACCU CG-GUGCUAU 961 UUU-GUUGGU UUGC-gCACC G-AUgUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUGCGU UGUAAGAGGU GAAAUUCUUG GAUUUCCGCA AGACGAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACAAUGCCG ACAAGGGAUU GGCGgu-cgu 1201 u---guauug a-ccucg--u cagcaccuuA UGAGAAAUCA C-AAGUU-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -ugcggu-ua auga-auuuu cauugau-ug 1561 -g--ugcuUC UUAGAGGGAC GUgcguu-gu auuagacgca -ggaggauag gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCACCCAA 1681 CGAGUgu--- --ACC-UUGA CCGAGA-GGC CU-GGGAAAU CU-GUGAACu UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAGUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gaug=uuuc ucc-UUUAUU gggg=a=uuu 1921 guc-gcgaga aCUUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCguag-uga accugcagaa gguucaagcu uukuu~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF525668 DEFINITION Toxarium undulatum small subunit ribosomal RNA gene, partial sequence. ACCESSION AF525668 VERSION NONE KEYWORDS . SOURCE Toxarium undulatum ORGANISM Toxarium undulatum Eukaryota; stramenopiles; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Striatellaceae; Toxarium. REFERENCE 2 (bases 1 to 1730) AUTHORS Kooistra,W.H.C.F. TITLE Direct Submission JOURNAL Submitted (28-JUN-2002) Marine Botany, Stazione Zoologica 'A. Dohrn', Villa Comunale, Naples, Campania 80121, Italy MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1730 /product="small subunit ribosomal RNA" BASE COUNT 455 a 336 c 466 g 473 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAGCA-C UUU--au-gg uGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AG-UUGCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AACACC---- -----AGAU- ---------G 241 GUGGCAUUUA UUAGA-UAAA --gcca---- acac-uuu-- -guguu---- -uggugauuc 301 auaa-uaa-c uuu--gcGAA -UCGCA-UGG Cuuac--G-C UGGC-GAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU GGGAUGGUAG GGUAU-UGGC CUACCAUGGC GUUGACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCU -GGGUCU-AU AUAGA-UCUG GCAAUUGGAA UG-AG-AACA AG-CCAAA-C 601 CUCUUA-UCG AGG-AAC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA UGU-UGC-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUgu 721 gcc=g-gg-g acg=ucuggu -c=g-gcac- -u----ca-- gu-guug-ga =c----uug- 781 ga--c-g-u- -uc-cu=guc auccuc-gg- gggaaau-ug ucu-g-gca- uuagGUuguc 841 ggg-ca---g gga-cccu-c gUC-GUUUAC UGUGAAUAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-AGU-CG CCGU-GAAUA -CAUUAGCAU GGAAUAAUGU UAUAGGACCU CG-GUACUAU 961 UUC-GUUGGU UUGU-gCACC G-GGgUAA-U GGUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 CGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA GU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUCGGGAUU GGCGUG-Ugu 1201 c---cucgcg a-cugcg--u cagcaccguA GGUGAAAACA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAA U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG AAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -GCcugc-ua auga-UUAGu cauuGgu-gA 1561 -g--gucuUC UUAGAGGGAC GUgcguu--g acuaaacgca -ggaagauag gGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A GAACC-UUGG CCGAGA-GGC UU-GGGUAAU CUUCUUAAUA UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-AAUC 1801 -AUCAGUUUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGGGAuugc -ggac=aggu ucc-UUCAUU ggggau=cug 1921 acu-gcgaga aCUUGUCCAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF290085 DEFINITION Uncultured marine diatom 48-5-EKD54 18S ribosomal RNA gene, partial sequence. ACCESSION AF290085 VERSION AF290085.2 GI:13447494 KEYWORDS . SOURCE uncultured marine diatom 48-5-EKD54 ORGANISM uncultured marine diatom 48-5-EKD54 Eukaryota; stramenopiles; Bacillariophyta; environmental samples. REFERENCE 3 (bases 1 to 1672) AUTHORS Lopez-Garcia,P. TITLE Direct Submission JOURNAL Submitted (21-MAR-2001) Division de Microbiologia, Universidad Miguel Hernandez, Facultad de Medicina, Campus de San Juan, San Juan de Alicante, Alicante 03550, Spain REMARK Sequence update by submitter COMMENT On Mar 26, 2001 this sequence version replaced gi:13021807. MEDLINE 21082079 PUBMED 11214316 FEATURES Location/Qualifiers source 1..1672 /organism="uncultured marine diatom 48-5-EKD54" /db_xref="taxon:151596" rRNA <1..>1672 /product="18S ribosomal RNA" BASE COUNT 426 a 316 c 443 g 487 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~AUUAUAUC AGUUAUAGUU -UAUUU-GAU Ag-UCCCU-- --UA-CUACU UGG-AUACCC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUC- AAuacccu-- -----ucu-- -------ggg 241 guaguauuua uuaga-uuga a-ACCAa--- Cccc-uucg- -ggg-ugaug -uggugauuc 301 auaaguaa-g cuu--gcGGA -UCGCa-ugc cuuu---g-g cggc-gAUGG AUCAUUCAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGGAAAU UAGGGUUUGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UC UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-C 601 CCCUUA-UCG AGU-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Ggauuugu 721 ggu-g-ug-u cca-gucggc -cuuugcuc- -u----uu-- ga-guga-ua gu---gcug- 781 uu--a-cug- -gu-cu=GCC AUGUUUGGG- UGGAAUC-UG UGU-G-GCA- UUAAGUUGUC 841 GUG-CAG--G GGA-UGCC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCUCUGAAUA -UAUUAGCAU GGAAUAAUGA UAUAGGACCU UG-GUACUAU 961 UUU-GUUGGU UUGC-gCACU G-AGgUAA-U GAUU-AAGAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUUUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACAAGGGAUU GGCGGa--gu 1201 u-ucguuucg u-cuccg--u CAGCACcuuG UGAGAAAUCA U-AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCUGCCU GCU-AAAUAG -cacgug-ua gugu-uua-u cacugcauuu 1561 -g--ugcuUC UUAGAGGGAC GUGCGCU-CU CUUAGACGCA -GGAAGAUAG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGuuc--- uuACC-UUGG CCGAGA-GGC CU-GGGCAAU CUUUUGAACU UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCGUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAGCC UCGGGAuugu -gguu=aguu ucc-UUUAUU ggaa=g=uua 1921 guc-gcgaga acuUGUCUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CC~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AY180020 DEFINITION Uncultured diatom clone CCW33 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION AY180020 VERSION NONE KEYWORDS . SOURCE uncultured diatom ORGANISM uncultured diatom Eukaryota; stramenopiles; Bacillariophyta; environmental samples. REFERENCE 2 (bases 1 to 1716) AUTHORS Stoeck,T. and Slava,E. TITLE Direct Submission JOURNAL Submitted (14-NOV-2002) Marine Science Center, Northeastern University, East Point, Nahant, MA 01908, USA MEDLINE NONE FEATURES Location/Qualifiers rRNA <1..>1716 /product="18S small subunit ribosomal RNA" BASE COUNT 453 a 320 c 448 g 495 t ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GA- ca-uucuu-- --ua-cuauU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCgca- aaaaucugac -----uucg- -----gaaag 241 auuguauuua uuaggUACCA A-GCCAGC-- cUCC-UUCG- -ggaguucuu -uggugauuc 301 auga-uau-a gaa--acGGA -UCGCA-UGg cauuu--g-c cggc-gacag gucauauAAg 361 uU-Ucug-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UUGC CUACCAUGGC AUUCACGGGU 421 AACGGGAGAU CAGGGUUUGA CUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-GAUUAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG ACAAUUGGAA UG-AG-AACG AU-GUAAA-C 601 AUCCUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AUU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-Gaaucuuu 721 ggu-a-ua-g gug-gccgac -cuu=ucac- -u----uu-- gu-ggau-ua u-----gug- 781 gu--a-gc-- -cu-gu=GCC UUUCUUGAG- UAAAGUU-UG GAU-G-GCA- UUAAUUUGUU 841 GCU-CUU--A CAA-UACU-C CUC-GUUUAC UGUGAAGAAA UUAGGGUGU- UC-AAAG-CA 901 GGC-GUA-CG CUG=UGAAUA -CAUUAGCAU GGAAUAAUAG AAUAGGACUU GG-GUCUUUU 961 UUU-GUUGGU U-ac-agacc g-AAgUAA-U GAUU-AAUAG GGACAGUU-- GGGGAUAUU- 1021 CGUAUUCCAG UGUCAGAGGU GAAAUUCUUG GAUUUCUGGA AGACGAACUA CU-GCGAAAG 1081 CAUUUAUC-- AG-GA-UGUU UUCAUUAAUC AAGAACGAAA AGU-UAGGGG GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGUCG ACUAGGGAUc gucagcuugu 1201 u-uauuuaug a-cacug--a cggcgccuUA UGAGAAAUCA --AAGUC-UU UGGGUU-CUG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGG-AAA CUUACCAGGU 1381 CCAGACAUAG U-G-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAA -UUcugu-ua augu-UUUCc cauuGgcauu 1561 -g--aguuUC UUAGAGGGAC UUCUGGU--G ACUAACUGGA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAG 1681 CAAGuug--- uccCC-UUGG CCGAGA-GGC UU-AGGUAAG CUUGUUAACG UGCUUCGUGA 1741 UAGGGAUUGA AUCUUGCAAU UAUUAUUCAU GAACGAGGAA UUCCUAGUAA ACGCA-GAUC 1801 -AUCAAUCUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAGGCC UCGAGAucgu -ggca=agcu uuc-uuaauu ggag=g=uga 1921 gcu-gugaga acuuguccaa AUCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF123596 DEFINITION Bolidomonas mediterranea 18S ribosomal RNA gene, partial sequence. ACCESSION AF123596 VERSION AF123596.1 GI:4633658 KEYWORDS . SOURCE Bolidomonas mediterranea. ORGANISM Bolidomonas mediterranea Eukaryota; stramenopiles; Bolidophyceae; Bolidomonas. REFERENCE 2 (bases 1 to 1783) AUTHORS Guillou,L., Chretiennot-Dinet,M.J., Medlin,L.K., Claustre,H., Loiseaux-de Goer,S. and Vaulot,D. TITLE Direct Submission JOURNAL Submitted (26-JAN-1999) Station Biologique de Roscoff, Place Georges Teissier BP74, Roscoff 29682, France MEDLINE NONE FEATURES Location/Qualifiers source 1..1783 /organism="Bolidomonas mediterranea" /strain="MINB11E5" /db_xref="taxon:91991" rRNA <1..>1783 /product="18S ribosomal RNA" BASE COUNT 477 a 343 c 453 g 510 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACgcu uuau-AC-UG UGAA-CC-U- GCGGAUG-GA 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCUCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACCCAAC C----ucu-- ----GGACGG 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAU-- aUGC-UUCG- -GCAUUUUUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG CCUUGA-G-C CGGC-GACAG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu=G-ac-a cgg=cguggu -cgu-cuc-- -a----au-- -g-aguc-ug ua----ccg- 781 uc-gc-aug- -ug-uc=gcc aUCcuUGGU- UAAAaCU-UG UCU-G-GCA- UUAGGUUGUC 841 GGG-CUU--G GGGAUAGC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAAGACCC AG-GUUCUAU 961 UUU-GUUGGU UUGC-GUACC U-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCGGU-Cgu 1201 u---UUUCCG A-CUCCG--U CAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GG-GCG-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UUggcg-ua auga-auu-u cauugcg-ua 1561 -c--AUCUUC UUAGAGGGAC UUUGCGU--G ACUAACGCAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUCC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGA CCGAGA-GG- CU-GGGUAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAGACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAAUU UCGGGAcuga -cuuu=Aggu uga-UUUAUU ucga=c=uua 1921 agg-uuggga aCUUACUUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACC~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF167153 DEFINITION Bolidomonas pacifica var. eleuthera strain OLI46SE 18S ribosomal RNA gene, partial sequence. ACCESSION AF167153 VERSION AF167153.1 GI:5713173 KEYWORDS . SOURCE Bolidomonas pacifica. ORGANISM Bolidomonas pacifica Eukaryota; stramenopiles; Bolidophyceae; Bolidomonas. REFERENCE 2 (bases 1 to 1799) AUTHORS Guillou,L., Moon-van der Staay,S.-Y., Claustre,H., Partensky,F. and Vaulot,D. TITLE Direct Submission JOURNAL Submitted (08-JUL-1999) Station Biologique de Roscoff, CNRS, BP74, Roscoff F-29682, France MEDLINE 99437844 PUBMED 10508085 FEATURES Location/Qualifiers source 1..1799 /organism="Bolidomonas pacifica" /strain="OLI46SE" /variety="eleuthera" /db_xref="taxon:91992" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 482 a 342 c 457 g 518 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACgcu uuaU-AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCUCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACCCAAC U----cuugu ----GGACGG 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAU-- aUGC-UUCG- -GCAUUUUUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG CCUCGU-G-C CGGC-GACAG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-gg-a acg=uuuggc -cgg-ccg-- -u----aa-- -c-gguu-ug ug----cug- 781 aa-au-guu- -uu-uc=gcc aucCUUGAC- GAAUACU-GG UUC-G-CCA- UUAAGUUGUG 841 UGA-GCU--U GGAGUCGU-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-GUACC U-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCGGU-Cgu 1201 u---UUUCCG A-CUCCG--U CAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCG-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UUggcg-ua auga-auu-u cauugcg-ua 1561 -c--AUCUUC UUAGAGGGAC UUUGCGU--G ACUAACGCAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGA CCGAGA-GGU CU-GGGUAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAGACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAACU UCGGGAcuga -gcga=Uugu ugc-UUCAUU guga=c=uUu 1921 ugc-uuggaa aCUUAUUUAA ACC---UCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF167154 DEFINITION Bolidomonas pacifica var. eleuthera strain OLI120SD 18S ribosomal RNA gene, partial sequence. ACCESSION AF167154 VERSION AF167154.1 GI:5713174 KEYWORDS . SOURCE Bolidomonas pacifica. ORGANISM Bolidomonas pacifica Eukaryota; stramenopiles; Bolidophyceae; Bolidomonas. REFERENCE 2 (bases 1 to 1785) AUTHORS Guillou,L., Moon-van der Staay,S.-Y., Claustre,H., Partensky,F. and Vaulot,D. TITLE Direct Submission JOURNAL Submitted (08-JUL-1999) Station Biologique de Roscoff, CNRS, BP74, Roscoff F-29682, France MEDLINE 99437844 PUBMED 10508085 FEATURES Location/Qualifiers source 1..1785 /organism="Bolidomonas pacifica" /strain="OLI120SD" /variety="eleuthera" /db_xref="taxon:91992" rRNA <1..>1785 /product="18S ribosomal RNA" BASE COUNT 477 a 339 c 451 g 518 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACgcu uuaU-AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCUCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACCCAAC U----cuugu ----GGACGG 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAU-- aUGC-UUCG- -GCAUUUUUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG CCUCGU-G-C CGGC-GACAG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-gg-a acg=uuuggc -cgg-ccg-- -u----aa-- -c-gguu-ug ug----cug- 781 aa-au-guu- -uu-uc=gcc aucCUUGAC- GAAUACU-GG UUC-G-CCA- UUAAGUUGUG 841 UGA-GCU--U GGAGUCGU-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-GUACC U-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCGGU-Cgu 1201 u---UUUCCG A-CUCCG--U CAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UUggcg-ua auga-auu-u cauugcg-ua 1561 -c--AUCUUC UUAGAGGGAC UUUGCGU--G ACUAACCGAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGA CCGAGA-GGU CU-GGGUAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAGACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAACU UCGGGAcuga -gcga=Uugu ugc-UUCAUU guga=c=uUu 1921 ugc-uuggaa aCUUAUUUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF167155 DEFINITION Bolidomonas pacifica var. eleuthera strain OLI41SA 18S ribosomal RNA gene, partial sequence. ACCESSION AF167155 VERSION AF167155.1 GI:5713175 KEYWORDS . SOURCE Bolidomonas pacifica. ORGANISM Bolidomonas pacifica Eukaryota; stramenopiles; Bolidophyceae; Bolidomonas. REFERENCE 2 (bases 1 to 1787) AUTHORS Guillou,L., Moon-van der Staay,S.-Y., Claustre,H., Partensky,F. and Vaulot,D. TITLE Direct Submission JOURNAL Submitted (08-JUL-1999) Station Biologique de Roscoff, CNRS, BP74, Roscoff F-29682, France MEDLINE 99437844 PUBMED 10508085 FEATURES Location/Qualifiers source 1..1787 /organism="Bolidomonas pacifica" /strain="OLI41SA" /variety="eleuthera" /db_xref="taxon:91992" rRNA <1..>1787 /product="18S ribosomal RNA" BASE COUNT 477 a 342 c 450 g 518 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACgcu uuaU-AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCUCU-- --UA-CUACU UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACCCAAC U----cuugu ----GGACGG 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAU-- aUGC-UUCG- -GCAUUUUUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG CCUCGU-G-C CGGC-GACAG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGCCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-gg-a acg=uuuggc -cgg-ccg-- -u----aa-- -c-gguu-ug ug----cug- 781 aa-au-guu- -uu-uc=gcc aucCUUGAC- GAAUACU-GG UUC-G-CCA- UUAAGUUGUG 841 UGA-GCU--U GGAGUCGU-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-GUACC U-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCAU UGUCAGAGGU GAAAUUCUUG GAUUUAUGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCGGU-Cgu 1201 u---UUUCCG A-CUCCG--U CAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UUggcg-ua auga-auu-u cauugcg-ua 1561 -c--AUCUUC UUAGAGGGAC UUUGCGU--G ACUAACGCAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGA CCGAGA-GGU CU-GGGUAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAGACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAACU UCGGGAcuga -gcga=Uugu ugc-UUCAUU guga=c=uUu 1921 ugc-uuggaa aCUUAUUUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAG-UGA ACC~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF167156 DEFINITION Bolidomonas pacifica strain OLI51103 18S ribosomal RNA gene, partial sequence. ACCESSION AF167156 VERSION AF167156.1 GI:5713176 KEYWORDS . SOURCE Bolidomonas pacifica. ORGANISM Bolidomonas pacifica Eukaryota; stramenopiles; Bolidophyceae; Bolidomonas. REFERENCE 2 (bases 1 to 1613) AUTHORS Guillou,L., Moon-van der Staay,S.-Y., Claustre,H., Partensky,F. and Vaulot,D. TITLE Direct Submission JOURNAL Submitted (08-JUL-1999) Station Biologique de Roscoff, CNRS, BP74, Roscoff F-29682, France MEDLINE 99437844 PUBMED 10508085 FEATURES Location/Qualifiers source 1..1613 /organism="Bolidomonas pacifica" /strain="OLI51103" /db_xref="taxon:91992" /note="15m env. environmental sample" rRNA <1..>1613 /product="18S ribosomal RNA" BASE COUNT 435 a 305 c 413 g 460 t ORIGIN 1 ~~~~~~~~~~ ~~~UACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACgcu uuaU-AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCUCU-- --UA-CUACA UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACCCAAC UG---UUCG- ---CGGACGG 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAU-- aAGC-UUCG- -GCUUUUUUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG CCUCGA-G-C CGGC-GACAG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-ag-u ucg=uuuggc -cgg-ccg-- -u----aa-- -a-gguc-ug ug----ccg- 781 aa-au-guu- -au-uc=gcc aUCcuUGGU- GUAAUCU-UG UCC-G-CCA- UUAAGUUGUG 841 UGG-GCU--U GAGGAUGC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-AUUGGU UUGC-GUACC U-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCGGU-Cgu 1201 u---UUUCUG A-CUCCG--C CAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UUggcgcga auga-auu-u cauuccg-ua 1561 -c--AUCUUC UUAGAGGGAC UUUGCGU--G ACUAACGCAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGC UCGAGA-GGG CU-GGGUAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAGACUG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~=~~~~ ~~~-~~~~~~ ~~~~=~=~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF123595 DEFINITION Bolidomonas pacifica 18S ribosomal RNA gene, partial sequence. ACCESSION AF123595 VERSION AF123595.1 GI:4633657 KEYWORDS . SOURCE Bolidomonas pacifica. ORGANISM Bolidomonas pacifica Eukaryota; stramenopiles; Bolidophyceae; Bolidomonas. REFERENCE 2 (bases 1 to 1804) AUTHORS Guillou,L., Chretiennot-Dinet,M.J., Medlin,L.K., Claustre,H., Loiseaux-de Goer,S. and Vaulot,D. TITLE Direct Submission JOURNAL Submitted (26-JAN-1999) Station Biologique de Roscoff, Place Georges Teissier BP74, Roscoff 29682, France MEDLINE NONE FEATURES Location/Qualifiers source 1..1804 /organism="Bolidomonas pacifica" /strain="OLI31SE3" /db_xref="taxon:91992" rRNA <1..>1804 /product="18S ribosomal RNA" BASE COUNT 481 a 350 c 460 g 513 t ORIGIN 1 ~~~~~~~~~~ ~~~AACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACgcu uuaU-AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCUCU-- --UA-CUACA UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACCCAAC UG---UUCG- ---CGGACGG 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAU-- aAGC-UUCG- -GCUUUUUUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG CCUCGA-G-C CGGC-GACAG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-ag-u ucg=uuuggc -cgg-ccg-- -u----aa-- -a-gguc-ug ug----ccg- 781 aa-au-guu- -au-uc=gcc aUCcuUGGU- GUAAUCU-UG UCC-G-CCA- UUAAGUUGUG 841 UGG-GCU--U GAGGAUGC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-GUACC U-AGGUAA-U GAUU-AAUAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCGGU-Cgu 1201 u---UUUCUG A-CUCCG--C CAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGGU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UGGUUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCCGCCU GCU-AAAUAG -UUggcgcga auga-auu-u cauuccg-ua 1561 -c--AUCUUC UUAGAGGGAC UUUGCGU--G ACUAACGCAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGC UCGAGA-GGG CU-GGGUAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAGACUG CAUUGAUUAC GUCCCUGCCC UUUGUACACA CCGCCCGUCG CACCUACCGA 1861 UUGAAUGGUC CGGUGAAAUU UCGGGAcuga -ucgu=uugg ugg-UUCAUU cugc=c=uua 1921 cga-ucggga aCUUACUUAA ACCUUAUCAU UUAGAGGAAG GUGAAGUCGU AACAAGGUUU 1981 CCGUAGGUGA ACCUGCAGAA GGAUCAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ // LOCUS AF167157 DEFINITION Bolidomonas pacifica strain OLI51104 18S ribosomal RNA gene, partial sequence. ACCESSION AF167157 VERSION AF167157.1 GI:5713177 KEYWORDS . SOURCE Bolidomonas pacifica. ORGANISM Bolidomonas pacifica Eukaryota; stramenopiles; Bolidophyceae; Bolidomonas. REFERENCE 2 (bases 1 to 1612) AUTHORS Guillou,L., Moon-van der Staay,S.-Y., Claustre,H., Partensky,F. and Vaulot,D. TITLE Direct Submission JOURNAL Submitted (08-JUL-1999) Station Biologique de Roscoff, CNRS, BP74, Roscoff F-29682, France MEDLINE 99437844 PUBMED 10508085 FEATURES Location/Qualifiers source 1..1612 /organism="Bolidomonas pacifica" /strain="OLI51104" /db_xref="taxon:91992" /note="60m env. environmental sample" rRNA <1..>1612 /product="18S ribosomal RNA" BASE COUNT 435 a 306 c 412 g 459 t ORIGIN 1 ~~~~~~~~~~ ~~~UACCUGG UUGAUCCUGC CAGUAGUCAU ACGCUCGUCU CAAA-GAUUA 61 AGCCAUGC-A -UGU-CUAAG UAUAAACgcu uuaU-AC-UG UGAA-AC-U- GCGAAUG-GC 121 UCAUUAUAUC AGUUAUAGUU -UAUUU-GAU AA-UCUCU-- --UA-CUACA UGG-AUAACC 181 GUAGUAAUUC UAGAGCUAAU ACAUGCGUA- AACACCCAAC UG---UUCG- ---CGGACGG 241 GUGGUAUUUA UUAGA-UUGA a-ACCAAU-- aAGC-UUCG- -GCUUUUUUG -UGGUGAUUC 301 AUAA-UAA-C UUU--GCGGA -UCGCA-UGG CCUCGA-G-C CGGC-GACAG AUCAUUCAAG 361 UU-UCUG-CC CUAUCAGCUU UGGAUGGUAG GGUAU-UGGC CUACCAUGGC UUUAACGGGU 421 AACGGAGAAU UAGGGUUCGA UUCCGGAGAG GGAGCCUGAG AGACGGCUAC CACAUCCAAG 481 GAAGGCAGCA GGCGCGU-AA AUUACCCAAU CCUG-ACACA GGGAGGUAGU GAC-AAUAAA 541 UAACAAUGCC -GGGCCU-UU UUAGG-UCUG GCAAUUGGAA UG-AG-AACA AU-UUAAA-U 601 CCCUUA-UCG AGG-AUC-AA UUGGAGGGCA AGUCUGGUGC CAGCAGCCGC GGUAAUUCCA 661 GCUCCAAUAG CGUAUAUUAA AGU-UGU-UG CAGUUA-AAA AGCUCGUAGU U-GGAUUUCu 721 ggu-G-ag-u ucg=uuuggc -cgg-ccg-- -u----aa-- -a-gguc-ug ug----ccg- 781 aa-au-guu- -au-uc=gcc aUCcuUGGU- GUAAUCU-UG UCC-G-CCA- UUAAGUUGUG 841 UGG-GCU--U GAGGAUGC-C AUC-GUUUAC UGUGAAAAAA UUAGAGUGU- UC-AAAG-CA 901 GGC-UUA-UG CCGUUGAAUA -CAUUAGCAU GGAAUAAUAA GAUAGGACCC UG-GUACUAU 961 UUU-GUUGGU UUGC-GUACC U-AGGUAA-U GAUU-AACAG GGACAGUU-- GGGGGUAUU- 1021 UGUAUUCCGU UGUCAGAGGU GAAAUUCUUG GAUUUACGGA AGACAAACUA CU-GCGAAAG 1081 CAUUUACC-A AG-GA-UGUU UUCAUUAAUC AAGAACGAAA -GU-UAGGG- GAUCG-AAGA 1141 UGAUUAGAUA CCAUCGUAGU CUUAACCAUA AACUAUGCCG ACUAGGGAUU GGCGGU-Cgu 1201 u---UUUCUG A-CUCCG--C CAGCACCUUA UGAGAAAUCA --AAGUC-UU UGGGUU-CCG 1261 GGGG-GAGUA -UGGUC-G-C AAGGCUGAAA CUUAAAGAAA UUGACGG--A AGGGCA-CCA 1321 C-CAG-GAGU GGAGCC-UGC -GGCUUAAUU UGACUCAACA -CGGGA-AAA CUUACCAGAU 1381 CCAGACAUAG U-A-AGGAUU GACAGAUUGA -G-AG-C-UC UUUCUUGAUU CUAU--GGGU 1441 GGUGGUGCAU GGCCGUUCUU A-GU-UGGUG GAGUGAUUUG UC-UG-UUAA UUCCGUUAAC 1501 G-AA-C-GAG ACCCCcGCCU GCU-AAAUAG -UUggcgcga auga-auu-u cauuccg-ua 1561 -c--AUCUUC UUAGAGGGAC UUUGCGU--G ACUAACGCAA -GGAAGUUGG GGGCAAUAAC 1621 AGGUCUGU-G AUGCCCUUAG AUGUUC-UGG GCCGCACGCG CGCUACACUG AUGCAUUCAA 1681 CGAGUUU--A UAACC-UUGC UCGAGA-GGG CU-GGGUAAU CUUUUAAACG UGCAUCGUGA 1741 UAGGGAUAGA UUAUUGCAAU UAUUAAUCUU GAACGAGGAA UUCCUAGUAA ACGCA-GUUC 1801 -AUCAGACUG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~=~~~~ ~~~-~~~~~~ ~~~~=~=~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ //