// LOCUS mt.A.turri 3788 bp RNA RNA ~?~???? DEFINITION Albinaria turrita. ACCESSION X71393,X71394 KEYWORDS No information. SOURCE Albinaria turrita. ORGANISM Albinaria turrita. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: X71394,X71393 LOCUS MTATSEGI 747 bp DNA INV 04-MAY-1993 DEFINITION A.turrita mitochondrial DNA, segment I ACCESSION X71393 KEYWORDS COI gene; cytochrome oxidase subunit I; large subunit ribosomal RNA; lrRNA gene. SOURCE Albinaria turrita ORGANISM Albinaria turrita Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Mesurethra; Clausilacea; Clausiliidae. REFERENCE 1 (bases 1 to 747) AUTHORS Rodakis,G.C. TITLE Direct Submission JOURNAL Submitted (08-APR-1993) G.C. Rodakis, University of Athens, Dept of Biochemistry, Cell & Molecular Biology & Genetics, Athens 15701, GREECE STANDARD full automatic REFERENCE 2 (bases 1 to 747) AUTHORS Lecanidou,R., Douris,V. and Rodakis,G.C. JOURNAL Unpublished STANDARD full automatic COMMENT NCBI gi: 297162 FEATURES Location/Qualifiers source 1..747 /organism="Albinaria turrita" /chromosome="mtDNA segment I" CDS <1..589 /codon_start=2 /gene="COI" /product="cytochrome oxidase, subunit I" /note="4 stops when translation attempted, frame 2, code 0" CDS 589..>747 /gene="lrRNA" /product="large subunit ribosomal RNA" /note="putative 5'end; 1 stop when translation attempted, frame 1, code 0" BASE COUNT 223 a 104 c 120 g 300 t ORIGIN LOCUS MTATSEGII 1410 bp DNA INV 04-MAY-1993 DEFINITION A.turrita mitochondrial DNA, segment II ACCESSION X71394 KEYWORDS large subunit ribosomal RNA; lrRNA gene; ND6 gene; transfer RNA-Ala; transfer RNA-Leu-cun; transfer RNA-Pro. SOURCE Albinaria turrita ORGANISM Albinaria turrita Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Mesurethra; Clausilacea; Clausiliidae. REFERENCE 1 (bases 1 to 1410) AUTHORS Rodakis,G.C. TITLE Direct Submission JOURNAL Submitted (08-APR-1993) G.C. Rodakis, University of Athens, Dept of Biochemistry, Cell & Molecular Biology & Genetics, Athens 15701, GREECE STANDARD full automatic REFERENCE 2 (bases 1 to 1410) AUTHORS Lecanidou,R., Douris,V. and Rodakis,G.C. JOURNAL Unpublished STANDARD full automatic COMMENT NCBI gi: 297163 FEATURES Location/Qualifiers source <1..>1410 /organism="Albinaria turrita" /chromosome="mtDNA segment II" tRNA 923..984 /product="transfer RNA-Leu" tRNA 985..1049 /product="transfer RNA-Pro" tRNA 1049..1113 /product="transfer RNA-Ala" CDS <1..922 /gene="lrRNA" /product="large subunit ribosomal RNA" /note="putative 3'end; 24 stops when translation attempted, frame 3, code 0" CDS 1121..>1410 /gene="ND6" /note="NCBI gi: 297164" /codon_start=1 /translation="MISLSFILGLIFPVFFIFTLANPISLLLLLLIIRLCAVLWLGSI IRSWFAYILFIVYIGGILVLFIYVCIIRSNYITGLYKYKTLLYVGIVVALIS" BASE COUNT 475 a 167 c 237 g 531 t ORIGIN BASE COUNT 388 a 139 c 167 g 383 t 2711 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~auacuca- ---------- uuu|aca-au g|agc----- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |--------- ---(----)- ---------- ---------- 301 -----(---- )-----|--- ---------( -----)---- ---------- -----<---- 361 ---------- ---------- -------->- ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ---------- -----aaguu cc(uaauu)g 601 gaa---guuu uauu------ ---------- ---------a uauuacaauu gcauuacauu 661 g<-------- ---------- ------c>ug uaugagauu- acu----(au auca-)---- 721 aguaaaucGU ACCUU(UUGC AUA)AUGGUG A-UACUAAAc uac-uauaa- ---------- 781 --------(- ----)----- --------(- ---)---<-- ---auau>-- ---(-----) 841 ---------- ---------u uuaacUCCCG AAAAUAA-AA GAUCUAAUUU ACCAau---- 901 ---------- (-----auga uauuaga)-- ---------a aauuaaguG- C-UAUU(GUG 961 GCAU-A)ACU A-GCauu-aG AUGGAAAAUU AGUAGU(GAA AC)GCUcuca c-UUUUAUUG 1021 AUAACUGGAU AUAGAAUAA- AUAUAU(UAA GU)AUAAAaa --------<- ---------- 1081 ---------- ---------- ---------- -------->- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- ---------c 1261 ca-uucuugg aagc(gauaa g)guuacaag aa-augaaau (uau-cau)g uuguaauauc 1321 caucacuauu uaaua----- ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>aua uu--agu(ug gugaua-u)a 1441 uuu-uaua|c (aca)-|ua- aau(uuauua )ac|uaa--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- ucuauucuac 1621 |ua-uguauu ---------- ---------( ------)-------- 1681 --------|- aguguauuGA UAAUGU-AUC A|AUUAGUA- aaauuu---- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)<- ---------- ---------- ---------- 1861 ---------- ---------- -------->- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||auauuua- 2221 -aaAUGUUGA UAAGGAACUC GACAAG---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )----auaaa 2341 UGUUUA|CGA CUGUUU(AAC AA)AAACAUA GCCAUUAA|- ------(gag aug------- 2401 )--------- -UUUAU-GUG UUAUCUGCCC AGC|UGA--- ---------- ---------- 2461 -(--aaac)- ---------- ---------- |--uu-UAAC |GGaC|CGGC AGU(AC-CUU 2521 G)ACUGUG|C (AAA)GG-UA GCAUAAUCAC UU|GACUUU( UAAUU)GGAG CC|UGGAAUG 2581 AAUGAAAUAA CG-UAGACAG -CUUGUCUCA UUAAUAGuac -ucUU-AAAU U|G|CUAUAG 2641 G-AG(UGAAA AUA)CUCUUU AauuuaAAAA UAGACGAGAA GACCCUU-AG -|-AAUUUUG 2701 AAAA-|-u-g uaaaagg-|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- (----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- ---ucuuuua 2941 -u---a-aaU UUUUGUUG(G GG)GAACA|A UAUUU(---- -----caug- --uaau-)AA 3001 AUAU|u|a|- ---------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- ---------- ------u>|- au-agaauga uagg------ ---(----uc 3181 ga)--|---u uuaAUAAUUA |uag-UUAAA UUACCU|AAG G|GAUAACAG |C-AUAAuuu 3241 ---------- (uauuag-)- ---------a agcUUGUGAC CUCGAUGUU| GGAC|U|AGG 3301 UA|CUAU-UA AGGCUA(AU- CG)UUUUAAU AUA-AUA|UG UUC(UGUUC) GAAC-UUUAC 3361 UACCUACAUG AUCUGAGUUC AGACC|GGC( GUAA)-cgAG GUCAGUUUCU AUCU|UUUUA 3421 ---|-<---- ----uuu>-- ---------- ------g-cu uacaa(UAGU AC(GAAA)GG 3481 ACC)cugua- agcacuuu-- ---------- ---|------ -(ucu-)--- ---------- 3541 --------aa aguaua~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.A.coeru 3788 bp RNA RNA ~?~???? DEFINITION Mitochondrion Albinaria coerulea. ACCESSION X83390 KEYWORDS No information. SOURCE Mitochondrion Albinaria coerulea. ORGANISM Mitochondrion Albinaria coerulea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: X83390 LOCUS MIACDNA 14130 bp DNA UNA 05-SEP-1995 DEFINITION A.coerulea complete mitochondrial DNA. ACCESSION X83390 KEYWORDS ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; cytb gene; lrRNA; ND1 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; srRNA; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Albinaria coerulea. ORGANISM Mitochondrion Albinaria coerulea Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Mesurethra; Clausiliacea; Clausiliidae. REFERENCE 1 (bases 1 to 14130) AUTHORS Hatzoglou,E., Rodakis,G.C. and Lecanidou,R. TITLE The complete sequence of the mitochondrial genome of the land snail Albinaria coerulea JOURNAL Genetics 140, 1353-1366 (1995) REFERENCE 2 (bases 1 to 14130) AUTHORS Rodakis,G.C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1994) to the EMBL/GenBank/DDBJ databases. G.C. Rodakis, Univ.of Athens, Dep. of Biochemistry, Cell and Mol. Biology and Genetics, Panepistimiopolis, Athens 157 01, GREECE COMMENT NCBI gi: 975668 FEATURES Location/Qualifiers source 1..14130 /organism="Albinaria coerulea" /mitochondrion CDS 11..1648 /gene="ND5" /note="starting codon=ATT, termination codon=TAG; pid:e197105; NCBI gi: 975669" /codon_start=1 /transl_table=5 /translation="MLLGVLCAIMGVIYMVLNMQNSSYLLMFNLFSTQSVNFNLALIC DKVSTSFLVVVLLISSCVFLFANEYMSEDHYNIRFGWILISFVASMGILILSGSIFTL LLGWDGLGLTSFALIAYYDNYNASSSAFLTLMTNRLGDVLIIATFSVILVTGLTVHFP PYTLVWLSSILFTIASFTKSAQYPFSAWLPAAMAAPTPVSALVHSSTLVTAGIYLMIR CFMVDGAPAEMYSLMGLVGSITCLLGGSVALFEYDLKKVIALSTLSQLGVMMYSLSLN LPYLALLHLYGHAMFKAMLFLGAGLILMMSYGTQDLRLLGSLLYSSPIVISLLNISML CLMGFPFVSSFYSKHLILEKMLDMNCNFFTSMMFMLGTLLTGMYSIRLMKFLCWGNNN NKPSYCNMSWQSKMSMFPLAALAVLSGQLMSYLDSSYMTFSWSTNQYNLILWGVLFLS IFFGIVMKFGNFYPTLMSSMMFLGPTSYNLLHYTKSLLIYMKRIDLSISEPNWVMSNL MYSSSWRVMSLFNWLTNYMLVTWFLLVWLMIMSILMW" CDS 1642..2541 /gene="ND1" /note="starting codon=ATG, termination codon=TAA; pid:e197094; NCBI gi: 975670" /codon_start=1 /transl_table=5 /translation="MVVFKSLLLNLCILLSVAFYTLLERKVLSSMQIRKGPNKVGLYG IIQPIADALKLFLKEFFIPVNSNSFMFMILPLLGLTLSLMLWAVFPSMWMFNFHSYLL MLFVALTGTFVYVIIFAGWSSNSKYSFLGGMRAAAQTISYEVSMLLLLFFAVLMYRTY SWYEAGLSSPIGIIIFIIMFIWFASCLAETNRAPFDFAEGESELVSGFNIEYYGGMFA LLFLAEYSSILFMCMMSTVWFLYSDMIFIMTLLILLIAMAFLFARGVYPRHRYDLLMN LCWKSFLPFSLCCICYSMLLWIV" CDS 2549..2846 /gene="ND4L" /note="incomplete termination codon=T; pid:e197095; NCBI gi: 975671" /codon_start=1 /transl_table=5 /translation="MTIYSYLLLLCMVMFVTFFTQKNNILSLMVVLESLMLITLSSVA VSLNYMAGSSMVMILLLCFAAAEAALSLSLLVCFIQVNSSCEMLAMNKILFAKKS" CDS 2847..3949 /gene="cytb" /note="starting codon=ATA incomplete termimnation codon=TA; pid:e197101; NCBI gi: 975672" /codon_start=1 /transl_table=5 /translation="MAESMLSLPTPLNISIWWNMGSILGMILGLQLLTGILLSMHYSS QLEMAFSSIIHIIRDVPGGWFLRLLHANGASLFFLFMYAHIGRGLYYQSYIIHPRVWM VGVTIFLVSMATAFLGYVLPWGQMSFWGATVITNLLSAVPYFGPSMVEWVWGGFSVGH ATLNRFFSLHFLLPFLISGLALLHIIFLHDKGSSNPLGNLFHLSKKPFHPYFTIKDSV GFLMVFGVLLMITFFSPSLLLDPENYISANPMVTPTHIQPEWYFLFAYAILRSIPSKL GGVVALLMSILILYFLPLSSYGKSIPVSMNIIYQVLFWILVVTFIILTWLGACEIEEP YLSLAGPLTLLYFLMFLLLGMSNNLNFNLIQLK" tRNA 3950..4016 /anticodon=(pos:3981..3983,aa:Asp) /product="tRNA-Asp" tRNA 4012..4079 /anticodon=(pos:4044..4046,aa:Cys) /product="tRNA-Cys" tRNA 4080..4149 /anticodon=(pos:4115..4117,aa:Phe) /product="tRNA=Phe" CDS 4153..4827 /gene="COII" /note="pid:e197096; NCBI gi: 975673" /codon_start=1 /transl_table=5 /translation="MSTWGQINLMDPASPIQMEMMLFHDHAMAILIGIFTLVSLLGVK LCFNTLSTRTMHEAQLLETLWTILPAFLLVWLALPSLRLLYLLDEQGSEGIILKAIGH QWYWSYEMPSMNISNFDSYMIPEEDLKPGDYRLLEVDNRPMVPYGLDINVITTSADVI HAWALPSMGVKMDAVPGRLNSMGFHANLPGIYYGQCSEICGANHSFMPITVEAIDVKD FIKMCN" tRNA 4849..4912 /anticodon=(pos:4879..4881,aa:Tyr) /product="tRNA-Tyr" tRNA 4908..4975 /anticodon=(pos:4939..4941,aa:Trp) /product="tRNA-Trp" tRNA 4977..5043 /anticodon=(pos:5008..5010,aa:Gly) /product="tRNA-Gly" tRNA 5040..5107 /anticodon=(pos:5072..5074,aa:His) /product="tRNA-His" tRNA complement(5112..5172) /anticodon=(pos:5142..5144,aa:Gln) /product="tRNA-Gln" tRNA complement(5171..5237) /anticodon=(pos:5204..5206,aa:Leu) /product="tRNA=Leu(UUR)" CDS complement(5254..5421) /gene="ATPase8" /note="start codon=CAT, termination codon=CTA; pid:e197106; NCBI gi: 975674" /codon_start=1 /transl_table=5 /translation="MPQLSPMNGLLIMFSVTLMLLIVLVINHFMLTPMASPLLASHLK TKKSGGEKLYY" tRNA complement(5423..5483) /anticodon=(pos:5453..5455,aa:Asn) /product="tRNA=Asn" CDS complement(5484..6126) /gene="ATPase6" /note="start codon=CAT, incomplete termination codon=A; pid:e197103; NCBI gi: 975675" /codon_start=1 /transl_table=5 /translation="MMVDLFSSLDGMTSLWSWLTPMFLSVFMIWNKTWSMDQNNIIKY LAASNWNNSTYNLTKSLLTIMMVLIIFNNLLGMAPFTYGITTSLWVNMTLALLLWGLI LLSGYIKSPKKSLAHLAPSGAPLLLLPFLILIESISIMIRPLTLTVRLVANMSAGHII LALMASVLSSNLSNTSLSLSYLIMVGYYLFEFFVCFIQAYIFTLLLSLYMNEHP" tRNA complement(6128..6194) /anticodon=(pos:6162..6164,aa:Arg) /product="tRNA-Arg" tRNA complement(6198..6269) /anticodon=(pos:6133..6235,aa:Glu) /product="tRNA-Glu" rRNA complement(6270..7028) /product="srRNA" tRNA complement(7029..7089) /anticodon=(pos:7057..7059,aa:Met) /product="tRNA-Met" CDS complement(7090..7441) /gene="ND3" /note="starting codon=TAT, incomplete termination codon=A; pid:e197097; NCBI gi: 975676" /codon_start=1 /transl_table=5 /translation="MILYVLPTSLSLCLLLMIIYLLTANLFKFASYELKTPFECGFDP LSNMRSPMTTRFFILTVLFLIFDVEVVLLFPVLSMVSFMTSPLIIMSIILFMMVLLIG LLYEMYYGVLDWVLN" tRNA complement(7451..7518) /anticodon=(pos:7486..7488,aa:Ser) /product="tRNA-Ser(UNC)" tRNA complement(7507..7564) /anticodon=(pos:7528..7530,aa:Ser) /product="tRNA-Ser(AGN)" CDS 7565..8878 /gene="ND4" /note="pid:e197102; NCBI gi: 975677" /codon_start=1 /transl_table=5 /translation="MTYLILLGASICLFPFWEVTMLTLAFIIPMSLTYLNINFTFSFS SELIWLTPIGTALIFLTLMVTLLVLIGTYNIKNYKYIGCLSSLNLVLMMAFCVCDFLT FYVMFEVSLIPTLLLILLWGYQPERMQAGFYLMLYTVTASLPLLLLLLYLYYTVGSLN FYIIMVYYSFNNNPLMLVGLMMAFLVKLPIYTCHLWLPKAHVEAPLGGSMVLAGVLLK LGGYGLYMLINFIISKSSSLVISVIITLSLWGAVIASIICIQQVDIKALVAYSSVAHM SLVSAGILMMSNWSYTCAKMTMIAHGYTSSALFVLANLSYLKIKSRSLMFMKGLLAIF PAMAFYWFLFSCMNMAAPPTLNFIGELLIIPSMYIASYMLLILMCIIMFISAGYSLYM YMTVNHGELGLYITPSIQLKNVDYHVLTAHLLPTFILLIPQLFSV" tRNA complement(8888..8953) /anticodon=(pos:8919..8921,aa:Thr) /product="tRNA-Thr" CDS complement(8961..9740) /gene="COIII" /note="start codon=CAT, termination codon=TAA; pid:e197104; NCBI gi: 975678" /codon_start=1 /transl_table=5 /translation="MQKTPFHLVEYSPWPLLVSLSLTSMPLGLIYYIRFGSIYLLLYG MLLTSIIAYMWWRDIVREATYQGHHTTYVVKGLKLGMALFILSEVCFFFAFFWAYFHS SLAPSIEIGSVWPPIGITVLNVFQVPLLNTSVLLLSGVSITWAHHALTEGKYYSTLSG LFFTVLLGVYFLMLQYGEYNETSFSIADGVYGSTFFMATGFHGLHVMVGTLFLFVNLV RTYYYHFSTTHHVGFLAAAWYWHFVDVVWLFLYISIYWWGS" tRNA 9783..9849 /anticodon=(pos:9814..9816,aa:Ile) /product="tRNA-Ile" CDS 9850..10773 /gene="ND2" /note="pid:e197099; NCBI gi: 975679" /codon_start=1 /transl_table=5 /translation="MTLQSVLLGAMIILGPILSMTSSNWIIIWIGLEISLLGFVSYYM LMKKIMSGEGIMMYFLIQSVSSTVMLLNGLYIFVNHASSYIYLFIFITMLMLKIGMFP LHFWIIPVYSKLSYLNIGIVGLLLKIVPMWILMHMGCITSEMLNLITMLSVTSMLFGA LIGMNLSKMRMVLGASTITHNGWLGMSCISGSLFKYFITYGFSLVILLVFLYLGDKMS ISLSLLSLSGLPPFMLFIGKINVLLMMMETNLWFIVLVFAILSAVISLVYYLKFSVMF FMNMKNNYLKHYKMAMFLLVNVTFGMLLFLT" tRNA 10774..10840 /anticodon=(pos:10805..10807,aa:Lys) /product="tRNA-Lys" CDS 10834..12363 /note="start codon=TTG, incomplete terminition codon=TA; pid:e197098; NCBI gi: 975680" /codon_start=1 /transl_table=5 /translation="MRWFYSTNHKDIGTLYMLFGIWCGMVGTGLSLLIRLELGTSGTL TDDHFYNVIVTAHAFVMIFFMVMPIMIGGFGNWMVPLLIGAPDMSFPRMNNMSFWLLP PAFILLICSSMVEGGAGTGWTVYPPLSSSLAHSGASVDLAIFSLHLAGMSSILGAINF ITTIFNMRSPGMTMERVSLFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDP AGGGDPILYQHLFWFFGHPEVYILILPGFGMISHILGNSAMKQPFGTLGMIYAMISIG ILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAIPTGIKVFSWLMTIYGSKVQYTASMY WVLGFIFLFTLGGLTGIVLSNSSLDIMLHDTYYVVAHFHYVLSMGAVFAIFAGFNFWF PVMTGLILHERLAKAQFVVMFIAVNMTFFPQHFLGLAGMPRRYSDYPDSYFMWNQLSS YGSLMSVFAVLLFVLIVWEAFLSQRSLLFVDATLYSREWSDGYFPPDFHSNIYQSYIT I" tRNA 12363..12427 /anticodon=(pos:12395..12397,aa:Val) /product="tRNA-Val" rRNA 12428..13462 /product="lrRNA" tRNA 13463..13526 /anticodon=(pos:13491..13493,aa:Leu) /product="tRNA-Leu(CUN)" tRNA 13523..13587 /anticodon=(pos:13552..13554,aa:Pro) /product="tRNA-Pro" tRNA 13586..13655 /anticodon=(pos:13617..13619,aa:Ala) /product="tRNA-Ala" CDS 13663..14130 /gene="ND6" /note="pid:e197100; NCBI gi: 975681" /codon_start=1 /transl_table=5 /translation="MMSLTFMAGLIFPVFMMLKGINPMSLLLALLTLSLCAVLWLGSF MSSWYAYILFIVYIGGILVLFIYVCMISSNYIASQHMYKSLLYAWGAVMLMSLTMETD TFIILGSNMMYTSVNIPMTILIFLSIYLLIVFFAVVNLMVNMTSILMVESSQV" misc_feature 10834..12362 /gene="COI" BASE COUNT 4628 a 1951 c 2196 g 5355 t ORIGIN BASE COUNT 398 a 128 c 150 g 359 t 2753 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~a aaucuaaau- ---------- --a|uua-ac -|-------- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |--------- ---(----)- ---------- ---------- 301 -----(---- )-----|--- ---------( -----)---- ---------- -----<---- 361 ---------- ---------- -------->- ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ---------- ------aaua cu(gguga)a 601 gauc--aa-- ---------- ---------- ---------- ---------- --------ca 661 u<-------- ---------- ------->-- aaaaagu--- -------(-- -aaa-)---- 721 ------acAU ACCUU(UUGC AUA)AUGGUG A-UACUAAAu uu--auucua a--------- 781 --------(- ----)----- --------(- ---)---<-- ---gauu>-- ---(-----) 841 ---------- ------uuau -au-uuCCCG AAAAUAA-AA GAUCUAACUU UUCAUg---- 901 ---------- (----cgaaa uuauuag)-- ---------a acacaaaau- c-UAUU(GUG 961 GCAU-A)AAU A-gaccu-cA AUGAAAAGUU AGUAGU(GAA AC)ACUuuca c-UUUUAUUG 1021 AUAUCUGGau auagaaUAA- AUAUAU(uua gu)AUAUAaa --------<- ---------- 1081 ---------- ---------- ---------- -------->- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- ---------u 1261 acauucuuaa a-gc(gauaa g)guuuuaag cg-aagaauu (uua-uau)a acaguaaaaa 1321 uuu--cuaau uaaua----- ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>aua uu--aac(ug guaguuuu)a 1441 uug--aua|u (aca)-|ua- uau(uuauau )au|uaa--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- gaaauucuau 1621 |uuauauauu --ac------ ---------( ------)-------- 1681 ------gu|c aguauacuaA UAAUGU-AUC A|AUUAGUA- aauagg---- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)<- ---------- ---------- ---------- 1861 ---------- ---------- -------->- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||-uauaau- 2221 -aaAUAUUAG UAAGGAACUC GACAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )-----uaau 2341 UGCUUA|CGA CUGUUU(AUC AA)AAACAUA GCCAAAAG|- ------(uag aua------- 2401 )--------- -UUUUUGGUG UUAUCUGCCC AGU|GAA--- ---------- ---------- 2461 -(---aaa)- ---------- ---------- |--UUUUAAC |GG-C|C-GC AGU(AC-CUU 2521 G)ACUGUG|C (AAA)GG-UA GCAUAAUAAU UU|GACUUU( UAAAU)GGAG CC|UAGAAUG 2581 AAAGAAAGAA CG-UAUGCAA -CUUGUCUCA UUGAUAUuac -u-uuaaauu U|A|AUGGUU 2641 G-AG(UGAAA AUA)CUCAUA auuuuaauAA UAGACGAGAA GACCCUU-AG -|-AAUUUUu 2701 AAAag|-c-a auaagua-|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- <--------- ---------- ---------- ---------- 2821 ---------- ---------- --->(----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- --auucuuau 2941 -ua--g-aUU UUUUGUUG(G GG)CAACA|A UAUUU(---- -----caaa- --uaau-)AA 3001 AUAU|a|u|u a--------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- ---------- ------a>|- ug-aaaguaa uaag------ ---(----uc 3181 ga)--|---u uaaAUAAUUa |uag-AAAAA UUACCU|AAG G|GAUAACAG |C-AUAAuuu 3241 ---------- (uauuaau)- ---------a agcUUGUGAC CUCGAUGUU| GGAC|U|AGG 3301 UA|CUAU-UA AGGCUA(AU- CG)UUUUAAU AUA-AUA|UG UUC(UGUUC) GAAC-UUUGU 3361 UACCUACAUG AUCUGAGUUC AGACC|GGC( GUAA)GCCAG GUCAGUUUCU AUCU|UUuau 3421 ---|-<---- ----cug>-- ---------- ------g-cc uauaa(UAGU AC(GAAA)GG 3481 ACC)uuaua- ggcacuua-- ---------- ---|------ -(uuca)--- ---------- 3541 --------ua aguaua~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.E.herkl 3788 bp RNA RNA 02-DEC-1996 DEFINITION Euhadra herklotsi; cytochrome oxidase; large subunit ribosomal RNA; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Leu; transfer RNA-Pro; transfer RNA-Val. ACCESSION Z71693 KEYWORDS cytochrome oxidase; large subunit ribosomal RNA; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Leu; transfer RNA-Pro; transfer RNA-Val. SOURCE Euhadra herklotsi. ORGANISM Euhadra herklotsi. REFERENCE 1 (bases 1 to 2051) AUTHORS Segawa,R., Kobayashi,T., Numachi,K., Ueda,T., Nishikawa,K., Watanabe,K. and Thomas,R.H. Yamazaki,N., Ueshima,R., Terrett,J.A., Yokobori,S., Kaifu,M., TITLE and Albinaria and implications of unusual tRNA secondary structures Evolution of pulmonate gastropod mitochondrial genomes: comparisons of complete gene organization of Euhadra, Cepaea JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2051) AUTHORS Yokobori,S. TITLE Direct Submission JOURNAL Submitted (20-MAY-1996) Shin-ichi Yokobori, Institute of Zoology, University of Munich, Luisenstrasse 14, Munich, D80333, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: Z71693 BASE COUNT 367 a 124 c 153 g 378 t 2766 others ORIGIN 1 |~~~~~~~~~ ~~~~~----- ----uauau- ---------- uua|aca-ua u|u------- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |--------- ---(----)- ---------- ---------- 301 -----(---- )-----|--- ---------( -----)---- ---------- -----<---- 361 ---------- ---------- -------->- ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ---------- -guuuauaua uu(-auau)a 601 auauacuagc gguau----- ---------- ---------- ---------- ------uuaa 661 u<-------- ---------- ------->-- cuaauagcuu -------(-- auua-)---- 721 --a-aguuAU ACCUU(UUGC AUA)AUGGAU U-AACUAUA- ----ag-gu- ---------- 781 --------(- ----)----- --------(- ---)----- ---(-----) 841 ---------- ---------g uuu-uaCACG AAUUAGU-UU GAGCUAAAUA CGAUa-uaau 901 ---------- (--------- auuagcu)-- ---------g uua----aa- auuGGU(GUU 961 GCAU-A)ACC u-uucauaaa aGUCAUAUUU AGGAGU(GAU AG)GCCucuc aaAAACUAAG 1021 AUAUCUUGAU UCUAAUUAA- ACGUAU(-uu a-)guacaau u-------<- ---------- 1081 ---------- ---------- ---------- -------->- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- -------aau 1261 acaUUUAUUG A-GU(GCUUA G)GCUUAAUA AA-aa--uau (uaa-uuu)a uaguauuucu 1321 u--------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>aua uuaaggu(uu aaua----)a 1441 cua-aaua|u (aca)-|uau uau(aauaac )au|uaa--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- aguaauuagu 1621 |aa-uaguua a--------- ---------( ------)-------- 1681 --------|u uu-cuuUUGA UAAUGU-UUA U|AUUAGUA- uaaa------ ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)<- ---------- ---------- ---------- 1861 ---------- ---------- -------->- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||---cgac- 2221 -auACUUCUA UAAUGAACUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )---auauuc 2341 UCUUCU|CAA CUGUUU(AUC AA)AAACAUA ACUGUGUG|- ------(uac uaa------- 2401 )--------- -UACAUAGCA UUUUCuGCUC AAU|GNU--- ---------- ---------- 2461 -(---uau)- ---------- ---------- |--AUUAAAU |AG-C|C-GC AGU(AU-UUU 2521 G)ACUGUG|C (AAA)GG-UA GCAUAAUCAA UU|GACUUA( UAAUU)GAAG UC|UGGAAUG 2581 AAUGAAAGUA UG-GGGAGUC -UCUGUAUCA UUUAGGUaaa ---UUUGAAU U|A|CUUAGG 2641 U-AG(UGAAA AUU)CUACUG u-aaaaaUAA UAGACGAGAA GACCCUA-GA -|-AAAUUUa 2701 aguaa|uc-u auau----|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- <--------- ---------- ---------- ---------- 2821 ---------- ---------- --->(----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- --uauaguau 2941 -au--c-aaU UUUUGUUG(G --)CGACA|U AGuag(---- -----caua- --aaac-)cu 3001 acuu|a|a|u g--------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- ---------- ------->|- ----aaaacc agca------ ---(-----c 3181 ca)--|---u guuuugugu- |gugaAAAAU UUACUC|UAG G|GAUAACAG |C-AUNAuau 3241 ---------- (u--uaa-)- ---------a agUUUGUGAC CUCGAUGUU| GGAC|U|AGG 3301 AA|A-UA-AU AGCCu-(-a- aa)-AGGUUU UUUAUAU|UG CUC(UGUUC) GAGCAUAAAA 3361 CUCCUACAUG AUCUGAGUUC AGACC|GGC( GUGA)GCCAG GUCAGUUUCU AUCU|UUAAA 3421 ---|-<---- ----uuu>-- ---------- ------u-cu uauaa(UAGU AC(GAAA)GG 3481 AAU)uuauu- gguugc---- ---------- ---|------ -(aau-)--- ---------- 3541 ---------- gcaugc~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.C.nemor 3788 bp RNA RNA ~?~???? DEFINITION Cepaea nemoralis. ACCESSION U23045 KEYWORDS No information. SOURCE Cepaea nemoralis. ORGANISM Cepaea nemoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: U23045 ID MICNMU230 standard; circular DNA; ORG; 14100 BP. XX AC U23045; XX DT 19-MAY-1995 (Rel. 43, Created) DT 19-MAY-1995 (Rel. 43, Last updated, Version 1) XX DE Cepaea nemoralis complete mitochondrial genome. XX KW . XX OS Cepaea nemoralis OC Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; OC Stylommatophora; Sigmurethra; Holopoda; Helicacea; Helicidae. XX OG Mitochondrion XX RN [1] RP 1-14100 RA Terrett J.A., Miles S., Thomas R.H.; RT "Complete DNA sequence of the mitochondrial genome of Cepaea RT nemoralis (Gastropoda: Pulmonata)"; RL Unpublished. XX RN [2] RP 1-14100 RA Thomas R.H.; RT ; RL Submitted (18-MAR-1995) to the EMBL/GenBank/DDBJ databases. RL Richard H. Thomas, Department of Zoology, The Natural History RL Museum, Cromwell Road, London, SW7 5BD, England XX CC NCBI gi: 733433 XX FH Key Location/Qualifiers FH FT source 1..14100 FT /organism="Cepaea nemoralis" FT /tissue_type="hepatopancreas" FT /dev_stage="Adult" FT /mitochondrion FT CDS 1..1530 FT /note="NCBI gi: 733434" FT /codon_start=1 FT /product="cytochrome oxidase subunit 1" FT tRNA 1531..1590 FT /anticodon=(pos:1561..1563,aa:Val) FT /product="tRNA-Val" FT rRNA 1586..2800 FT /note="16S rRNA" FT tRNA 2805..2864 FT /anticodon=(pos:2834..2836,aa:Leu) FT /product="tRNA-Leu(CUN)" FT tRNA 2866..2927 FT /anticodon=(pos:2896..2898,aa:Ala) FT /product="tRNA-Ala" FT CDS 2922..>3413 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733435" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 6" FT tRNA 3417..3479 FT /anticodon=(pos:3446..3448,aa:Pro) FT /product="tRNA-Pro" FT CDS 3638..5167 FT /note="NCBI gi: 733436" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 5" FT CDS 5176..>6057 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733437" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 1" FT CDS 6062..>6298 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733438" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 4L" FT CDS 6298..7440 FT /note="NCBI gi: 733439" FT /codon_start=1 FT /product="cytochrome b" FT tRNA 7477..7536 FT /anticodon=(pos:7507..7509,aa:Cys) FT /product="tRNA-Cys" FT tRNA 7539..7599 FT /anticodon=(pos:7569..7571,aa:Phe) FT /product="tRNA-Phe" FT CDS 7599..8252 FT /note="NCBI gi: 733440" FT /codon_start=1 FT /product="cytochrome oxidase subunit II" FT tRNA 8245..8301 FT /anticodon=(pos:8272..8274,aa:Tyr) FT /product="tRNA-Tyr" FT tRNA complement(8473..8530) FT /anticodon=(pos:8499..8501,aa:Gln) FT /product="tRNA-Gln" FT CDS complement(8581..8742) FT /note="NCBI gi: 733441" FT /codon_start=1 FT /product="ATPase subunit 8" FT tRNA complement(8744..8804) FT /anticodon=(pos:8764..8766,aa:Asn) FT /product="tRNA-Asn" FT CDS complement(<8828..9385) FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733442" FT /codon_start=1 FT /product="ATPase subunit 6" FT tRNA complement(9427..9489) FT /anticodon=(pos:9457..9459,aa:Arg) FT /product="tRNA-Arg" FT tRNA complement(9484..9545) FT /anticodon=(pos:9512..9514,aa:Glu) FT /product="tRNA-Glu" FT rRNA complement(9553..10262) FT /product="12S rRNA" FT CDS complement(10272..10676) FT /note="NCBI gi: 733443" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 3" FT tRNA complement(10691..10750) FT /anticodon=(pos:10718..10720,aa:Thr) FT /product="tRNA-Thr" FT CDS complement(<10752..11564) FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733444" FT /codon_start=1 FT /product="cytochrome oxidase subunit III" FT tRNA 11723..11777 FT /note="tRNA-Ser(AGN)" FT /anticodon=(pos:11746..11748,aa:Ser) FT CDS 11813..>13061 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733445" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 4" FT tRNA 13069..13128 FT /note="tRNA-Ile" FT /anticodon=(pos:13096..13098,aa:Ile) FT CDS 13154..>14098 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733446" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 2" XX SQ Sequence 14100 BP; 3689 A; 2671 C; 2998 G; 4742 T; 0 other; BASE COUNT 298 a 167 c 221 g 318 t 2784 others ORIGIN 1 |~~~~~~~~~ ~~~~~----- ---uaaugu- --------uu aca|aca-uu a|caau---- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |--------- ---(----)- ---------- ---------- 301 -----(---- )-----|--- ---------( -----)---- ---------- -----<---- 361 ---------- ---------- -------->- ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ---------- ---------- cg(-ggaa)c 601 gugcuuagua ugcuu----- ---------- ---------- ----uuaaug aucuuacuca 661 c<-------- ---------- ------->ua auaucuauug cuaagac(gu aaaac)---g 721 uuu-aauaUU UACUU(UUGC AUC)AUGGGU C-AAUUAA-- ----aa-uuu uc-------- 781 --------(- ----)----- --------(- ---)---<-- -cugauc>-- ---(-----) 841 ---------- ---------g uuu-uuCGCG AAGCCGC-AG GAGCUAGUUA Caagc--uau 901 ---------- (--------u uaggcuu)-- ---------g ua-----gg- agGUAC(GUG 961 GCAU-U)GUG C-ucua---u acgUGUAGUU AGGAGU(GAU AG)GCCuauc aaCUGCGUGG 1021 AUAUCUCGAU gcacacgaa- aauaug(-ua g-)uauaauu --------<- ---------- 1081 ---------- ---------- ---------- -------->- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- ---------- 1261 ccggacuacg a-aa(guuaa g)ccucguag ua-uauacaa (aua-uua)g uguauc---- 1321 -------uuu uaacggcc-- ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>cua ac-cguc(ua uuauuuug)g 1441 gca-auca|u (a-u)-|uua ugu(ugagcu )au|guu--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- acuagugugc 1621 |cg-cggg-u g--------- ---------( ------)-------- 1681 --------|u guuuugUUGA UAAUGU-UGU C|AUAAGUA- GC-------- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)<- ---------- ---------- ---------- 1861 ---------- ---------- -------->- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||-acau-u- 2221 -aaauagCCU GAAGGAACUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )------ucu 2341 GCUUCU|CAC CUGUUU(AUC AA)AAACAGC GCUGUAUG|- ------(uaa uuga------ 2401 )--------- -CGUAUGGUA C-UUCUGCUC CAU|GG---- ---------- ---------- 2461 -(--uaug)- ---------- ---------- |---CUAAAU |AG-C|C-GC AGU(AC-UCU 2521 G)ACUGUG|C (AAA)GG-UA GCAUAAUAAU UU|GGCUUA( UAAUU)GAAG UC|UGGCUCG 2581 AAAGAAUUAA UG-GGAAGCA -GCUGUCUCC AGGgguacua -guACAAAAU U|A|GUAAGU 2641 A-AG(UGAAA AUA)CUUGCG G-gaagAAAA UAGACGAGAA GACCCUA-GA -|-AGCUUG- 2701 -----|---- --------|< uuauuugu>- ---------- ---------- ---------- 2761 ---------- ---------- <--------- ---------- ---------- ---------- 2821 ---------- ---------- --->(----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- ---------- 2941 ---------- -UUUGUUG(G GG)CGACA|G AAUUG(---- -----caug- --gaac-)CA 3001 AUUU|u|a|u ---------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- ---------- ------->|- --------gg aug------- ---(-----u 3181 ga)--|---- cguAUAGCAg |gaaauuAAG CUACUC|UAG G|GAUAACAG |C-AUAAuua 3241 ---------- (---aac-)- ---------u uguUUGUGAC CUCGAUGUU| GGAC|U|AGG 3301 UA|GAAU-AG UCCCU-(-a- ga)-AGGGAC UAA-AAA|UG CUC(UGUUC) GAGCA-gcuU 3361 AACCUACAUG AUCUGAGU-C AGACC|GGC( GUAA)GCCAG GUCAGUUUCU AUCU|UUUUA 3421 ---|-<---- ----aua>-- ---------- ------a-ua cuugc(UAGU AC(GAAA)GG 3481 ACC)guagg- uugcauua-- ---------- ---|------ -(auac)--- ---------- 3541 --------ua ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.Cac.lac 3788 bp RNA RNA 22-JAN-1997 DEFINITION Cacozeliana lacertina. ACCESSION AF101007 KEYWORDS No information. SOURCE Cacozeliana lacertina. ORGANISM Cacozeliana lacertina. REFERENCE 1 (bases 1 to 2051) AUTHORS Charles Lydeard, Wallace Holznagel JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: UNP00167 BASE COUNT 465 a 213 c 276 g 388 t 2446 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~auauggc -------uga auu|acu-ug u|uaa----- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< aaauucuaga uagauauu-- ---------- 241 ---------- ---->----- |--------- uga(aaca)u cuauugu--- ---------- 301 -----(---- )-----|--- cuuaguaaa( ggcga)aaga aa-------- ------ ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ---------- -auuaaagua cc(-gaga)g 601 ggaacaauaa aag------- ---------- ---------- ---------- ------cuuc 661 u<-------- ---------- ------a>aa aaacaACU-- -------(-- aaau-)---- 721 -----AGUGU ACUUU(UCGC AUC)ACGGCC U-AGCAAGA- ----guaaa- ---------- 781 --------(- ----)----- --------(- ---)---<-- auuugaa>-- ---(-----) 841 ---------- --------uu aacuuuCUCG AAAGCCG-GC GAGCUAUCUU UUUCu--ggu 901 ---------- (uuuuuagaa cauuuau)-- ---------g cu----auua A-AAAU(GUG 961 GCAA-A)AUU U-Uaaua-aa aGGAAAAGAU AGCUGU(AAU AC)GCUuuuc gCGCUGGU-G 1021 AUAGCUAGUU CUUCCAAAA- AGGUAU(-AU AA)GUGCCGA ggc-gagu- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- cucagcc--u 1261 aaaaAGACUU A-AG(GAUAA G)CUUAAGUC UA---aaacg (gaa-aau)a guagug---- 1321 ------uuau uaacuc---- ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>aau gu-aggc(uu gaaacu-a)g 1441 cca-gcau|a (u-a)-|aag ucu(guuaua )ag|aua--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- agaaUGGAAG 1621 |ua-uaguuu u-u------- ---------( ------)-------- 1681 -------a|a aaacuuaugc uAAUGC-UAG G|AUGAGUA- UUUu------ ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||--uuuua- 2221 -aauUAGGAA GAAGGAACUC GGCAAC---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )------aau 2341 augccu|cgC CUGUUU(AGC AA)AAACAUG GCUCUUUG|A ------(aaa aaac------ 2401 )------UAA -UAAAGAGUC GGACCUGCCC AGU|GA---- ---------- ---------- 2461 -(---agu)- ---------- ---------- |---UUUAAC |GG-C|C-GC GGU(AC-UCU 2521 G)ACCGUG|C (AAA)GG-UA GCAUAAUCAC UU|GCCUUA( UAAUU)GAAG GC|UGGUAUG 2581 AAUGGUUUGA CGAGGGCAUA -ACUGUCUCC UUCCUAauua -u-UAGAAUU U|G|ACCUGU 2641 G-GG(UGAAG AGG)CCCAUa u-aaAACUGA AGGACGAGAA GACCCUGUCG -|-AGCUUU- 2701 agaag|--aa aguag---|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- (----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- -----cuacu 2941 cuu--a-uuc aUUGGUUG(G GG)CGACA|A GGGAA(---- -----caau- agaagc-)UU 3001 CCCU|u|a|a ua-------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- ----aauaaa cauauau>|- gu-aagGAUC cagg------ ---(-----a 3181 uu)--|---c cugAUUACA- |aaa-AUUAG UUACCG|CAG G|GAUAACAG |C-AUAAUCU 3241 UUUUUGAGAG (A--CCUU)A UCGAAAAGGG GGGUUGUGAC CUCGAUGUU| GGAC|U|AGG 3301 AU|AUCC-CG AAGGUG(CA- GA)AGCCUUC GAU-GGU|UG GUC(UGUUC) GACCAUUAAA 3361 AUCCUACAUG AUCUGAGUUC AGACC|GGC( GUGA)GCCAG GUCAGUUUCU AUCC|UCAGU 3421 ---|-<---- -uuuuua>-- ---------- ------c-uc aggcc(UAGU AC(GAAA)GG 3481 AUC)gggcu- ggggaaa--- ---------- ---|------ -(aaa-)--- ---------- 3541 ---------u uucuau---- --------(- ---------- ---)------ ---------- 3601 ---------- ----- 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.P.palud 3788 bp RNA RNA 22-JAN-1997 DEFINITION Paracrostoma paludiformis subsp. was Brotia. ACCESSION AF101008 KEYWORDS No information. SOURCE Paracrostoma paludiformis subsp. was Brotia. ORGANISM Paracrostoma paludiformis. REFERENCE 1 (bases 1 to 2051) AUTHORS Wally Holznagel, Chuck Lydeard JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: UNP00166 BASE COUNT 490 a 194 c 254 g 421 t 2429 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~u uaagaacaug aauu----uu aau|acu-aa a|uga----- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |uuuuauuuu uga(agca)u caaaaag--- ---------- 301 -----(---- )-----|--- ccuaguaau( ggaga)aaga aa-------- ------ ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- --ugcuaaga aagaagagua cu(-gcaa)a 601 ggaau-auug uu-------- ---------- ---------- ---------- ----aauuaa 661 g<-------- ---------- ------c>ca uagcagcua- -------(-- aaga-)---- 721 ----uagcGU ACUUU(UUGC AUC)ACGGUU U-AGCAAGAg aa--uaucga ---------- 781 --------(- ----)----- --------(- ---)---<-- ---agcu>-- ---(-----) 841 ---------- -------ucg -ug-cuCUCG AAAACUG-GU GAGCUAUUCU UUUUc-aagu 901 ---------- (--------- ---uuua)-- ---------g cuuuuuacua A-AAGU(GUA 961 GCAA-A)ACU U-Ugguu-aa aAAAAAGGAU AGAUAU(GAG AU)Uuuaucc gcACCGGU-G 1021 AUAGCUAGUU cccuuagaa- AAGCAU(-AG AA)GUGCUAA aguaaaga- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- uuuuaca-uu 1261 auaGUUUAUU A-AG(GAUAA G)CUUAAUAA AA-guacagg (aaa-aag)a cauauacu-- 1321 -----uuaau gggu------ ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>uac uu-gggc(uu gaaauu-a)g 1441 cca-uuau|a (acg)-|aaa uuu(guuaua )aa|aua--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- acaaUAAGGG 1621 |UA-aaa-ag u--------- ---------( ------)-------- 1681 --------|g cucaauuuau uUAUGC-UAA A|AUGAGUA- UUUucac--- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||----uua- 2221 -aaaUAAAAA GAAGGAACUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )-------uu 2341 uuacnu|cgC CUGUUU(AUC AA)AAACAUG GCUCUUUG|U ug----(uuu ---------- 2401 )----uaAUA -UAAAGAGUC AGGCCUGCCC AGU|GAA--- ---------- ---------- 2461 -(---aac)- ---------- ---------- |--UUUUAAC |GG-C|C-GC GGU(AC-CCU 2521 G)ACCGUG|C (AAA)GG-UA GCAUAAUCAU UU|GCCUUA( UAAUU)GAAG GC|UUGUAUG 2581 AAUGGUUCAA CGAAAGCACU -GCUGUCUCC UUUUUAauag -a-UAGAAUU U|G|ACUUCU 2641 A-GG(UGAAG AGG)CCUAGa u-auAAUUGA AAGACAAAAA GACCCUGUCG -|-AGCUUUa 2701 aaagu|ca-a guuagaaa|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- (----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- -----cuaac 2941 -ugu-u-cuu uUUGGUUG(G GG)CGACC|A AGGAA(---- -----caau- aaaagc-)UU 3001 CCUU|u|u|c ua-------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- ----auuuaa cuuauag>|- gu-acUGAUC cagc------ ---(---aua 3181 aa)--|---g cugAUUGAA- |aaa-AUUAG UUACCG|CAG G|GAUAACAG |C-AUAAUCU 3241 CUCUUGAGAG (A--CCAA)A UCGAAAGGGG GGGUUGUGAC CUCGAUGUU| GGAC|U|AGA 3301 AU|GUCC-UA AAGAUG(CA- GA)AGUCUUU AAA-GGU|UG GUC(UGUUC) GACCAUUAAA 3361 AUUCUACAUG AUCUGAGUUC AGACC|GGC( GUGA)GCCAG GUCAGUUUCU AUCU|UCAAU 3421 ---|-<---- -uauuag>-- ---------- ------u-uu aauuu(UAGU AC(GAAA)GG 3481 AUC)ggauu- aaagaaa--- ---------- ---|------ -(uua-)--- ---------- 3541 ---------u uuugaa---- --------(- ---------- ---)------ ---------- 3601 ---------- ----- 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.L.bleek 3788 bp RNA RNA 25-DEC-1997 DEFINITION Mitochondrion Loligo bleekeri.; tRNASerGCU; tRNA-Lys; tRNA-Trp; 12s rRNA; tRNA-Val; 16s rRNA; tRNA-Ile; tRNA-Gln; NADH dehydrogenase 1; tRNA-Pro; NADH dehydrogenase 6; cytochrome b apoenzyme; tRNA-Ser; NADH dehydrogenase 3; cytochrome c oxidase 2. ACCESSION AB009838 KEYWORDS tRNASerGCU; tRNA-Lys; tRNA-Trp; 12s rRNA; tRNA-Val; 16s rRNA; tRNA-Ile; tRNA-Gln; NADH dehydrogenase 1; tRNA-Pro; NADH dehydrogenase 6; cytochrome b apoenzyme; tRNA-Ser; NADH dehydrogenase 3; cytochrome c oxidase 2. SOURCE Mitochondrion Loligo bleekeri. ORGANISM Mitochondrion Loligo bleekeri. REFERENCE 1 (bases 1 to 8148) AUTHORS Tomita,K., Ueda,T. and Watanabe,K. TITLE sequencing Completing of squid (Loligo breekeri) mitochondiral genome JOURNAL Unpublished (1998) STANDARD No information REFERENCE 2 (bases 1 to 8148) AUTHORS Tomita,K. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) to the DDBJ/EMBL/GenBank databases. Kozo Tomita, University of Tokyo, Department of Chemistry & Biotechnology; 7-3-1, Hongo, Bunkyo-ku, Tokyo 113, Japan (E-mail: tomita@kwl.t.u-tokyo.ac.jp, Tel: 03-3812-2111, Fax:03-5800-6950) STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: AB009838 BASE COUNT 448 a 98 c 235 g 521 t 2486 others ORIGIN 1 |~~~~~~~~~ ~uaaagaauu aaguuacaaa gug-----uu gua|uuuuaa u|gua----- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |--------- -au(aaaa)a u--------- ---------- 301 -----(---- )-----|--- ---------( -----)---- ---------- ------ ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ----aauuuu gguuuaagua cu(-guaa)a 601 ggaua-gaag ua-------- ---------- ---------- ---------- --uauuuguu 661 u<-------- ---------- ------->uu uaguaaagau -------(-- -aaa-)---- 721 ---auuuuGU ACCUU(UUGU AUA)AUGGGU U-GAUgauau uauuag-uu- ---------- 781 --------(- ----)----- --------(- ---)---<-g uuuauag>-- ---(-----) 841 ---------- ---------a gcu-auCUCG AAUUGAA-AG GAUUUAUUUG Auaau----- 901 ---------- (--------- -------)-- ---------- -----auau- guUAAC(GUG 961 GUAA-A)GUU A-uaugu-uG AUUAUUGAAU GGUAAU(GAA AU)GUUuauc guUUUUCAGU 1021 AUAGCUAGUU UAUUAGUGAU AAGUAU(-uu aa)GUACUau aguguu--- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- -aacauuagu 1261 uuauUGUAUG A-GG(GAUAA G)CUUUAUAU AA-gaaugua (gaauauu)u agua------ 1321 ----guaaua uuuauuauaa uu-------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>uaa guagggu-ua aagauauu-g 1441 uuuuucuu|a (aug)-|auu uaa(guuuua )ug|u----- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- gaagUUAAUA 1621 |aa-ugguua uu-------- ---------( ------)-------- 1681 -------a|g uaacuaaauA UAAUGU-UAA U|AUGAGUA- Uuaggu---- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||-uaagua- 2221 -aaaUAAAAU AAAGGAAUUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )------uaG 2341 UAAUCU|CGC CUGUUU(AUC AA)AAACAUC UCUCUUUG|U ------(aau uuau------ 2401 )------AUA -UAAGGAGUU GGGCCUGCUC GGU|GA---- ---------- ---------- 2461 -(--aaau)- ---------- ---------- |---UUUAAC |AG-C|U-GC GGU(AU-UUU 2521 A)ACUGUA|C (UAA)GG-UA GCAUAAUAAU UU|GCCUUA( UAAUU)UGAG GC|UAGAAUG 2581 AAUGGUUUGA CGAAGGUUAA -UCUGUCUCU AUUUUAuuuc -u-UAGAAAU U|A|AUUUUC 2641 AUAG(UGAAA AAG)CUUGAA U-ucuUUAAA GGGACGAGAA GACCCUAUau u|uAAUUcu- 2701 uau--|u--a uuu-----|< uuuu---->- ---------- ---------- ---------- 2761 ---------- ---------- <--------- ---------- ---------- ---------- 2821 ---------- ---------- --->(----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- -------aga 2941 -u---u-uau uUUAAUUG(G GG)UGAUU|A AGGAA(uaaa guauauuagu uaguaac)UU 3001 CCUU|a|g|u ag-------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- -----gauau auuguug>|a auaaaguaac cgauauuacg ---(uauaga 3181 ac)-c|guau auugcuuau- |-aa-UAUAG UUACCA|UAG G|GAUAACAG |C-GUAAUUU 3241 AUUUAGAGAG (U--UCUU)A UUGAAAAAUA AGAUUGCGAC CUCGAUGUU| GGAU|U|AAA 3301 GU|AACC-UU AAGGUG(CA- GA)AGCUUUA AUA-GGU|AA AUC(UGUUC) GAUUUUUAAA 3361 ACUUUACAUG AUCUGAGUUC AGACC|GGC( GUGA)GCCAG GUUGGUUUCU AUCU|UUUAA 3421 ---|--- ---------- ------g-cu ucuuu(UAGU AC(GAAA)GG 3481 AUC)gaagaa agcuaaa--- ---------- ---|------ -(guu-)--- ---------- 3541 ---------u uuau------ ---uaaac(g ugaauaaaau aa-)guuua- ---------- 3601 ---------- ----- 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.M.eduli 3788 bp RNA RNA ~?~???? DEFINITION Mitochondrion Mytilus edulis. ACCESSION M83756 KEYWORDS No information. SOURCE Mitochondrion Mytilus edulis. ORGANISM Mitochondrion Mytilus edulis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: M83756 LOCUS MSLMTFR1A 5314 bp ds-DNA ORG 09-JUL-1992 DEFINITION Mytilus edulis mitochondrial NADH dehydrogenase subunit 5 (ND5) gene, 3' end; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; and cytochrome b (cyt b), 5' end. ACCESSION M83756 KEYWORDS NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; large subunit ribosomal RNA; small subunit ribosomal RNA; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Phe; transfer RNA-Tyr. SOURCE Mitochondrion Mytilus edulis (chromosome Mitochondrion Mytilus edulis) adult DNA. ORGANISM Mitochondrion Mytilus edulis Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Isofilibranchia; Mytiloida; Mytilaceae; Mytilidae. REFERENCE 1 (bases 1 to 5314) AUTHORS Brown,W.M., Boore,J.L. and Hoffmann,R.J. TITLE A novel mitochondrial genome organization for the blue mussel, Mytilus edulis JOURNAL Genetics 131, 397-412 (1992) STANDARD full staff_review FEATURES Location/Qualifiers CDS <1..245 /product="NADH dehydrogenase subunit 5" /gene="ND5" /note="putative" /codon_start=1 /translation="EDVVYRKFNFSSWEGVFFKGSRTVAQSLDQGWLELLGPQGVHAG LGQFSCLNEIVQKNYFTYQLVVWGLLVAGGVSLIIFM" /citation=[1] CDS 246..722 /product="NADH dehydrogenase subunit 6" /gene="ND6" /note="putative" /codon_start=1 /translation="MRVMIMCVSLMSVFSIVLIAKQPISLGLVFIEGSMIACVEIALE VRSLLGFLLFLTYVRGVMVLFLYVLSIYPNEVYRFNLEFVMIVRRCCAMMGLVGLMNY EYVEISGSIIFKVYGWRKGVKPMYPNSRRFAVCDVSGVVFVYKNHSAFAKSKMRSR" /citation=[1] tRNA 725..792 /anticodon=(pos:755..757,aa:Phe) /product="tRNA-Phe" /note="putative" /citation=[1] rRNA 793..1737 /note="Location of 5' and 3' ends imprecisely known. Nucleotides 997-1539 not determined from both DNA strands." /product="small subunit rRNA" /note="putative" /citation=[1] tRNA 1738..1803 /anticodon=(pos:1769..1771,aa:Gly) /product="tRNA-Gly" /note="putative" /citation=[1] tRNA 1804..1868 /anticodon=(pos:1835..1837,aa:Asn) /product="tRNA-Asn" /note="putative" /citation=[1] tRNA 1869..1933 /anticodon=(pos:1899..1901,aa:Glu) /product="tRNA-Glu" /note="putative" /citation=[1] tRNA 1935..2002 /anticodon=(pos:1969..1971,aa:Cys) /product="tRNA-Cys" /note="putative" /citation=[1] tRNA 2003..2069 /anticodon=(pos:2034..2036,aa:Ile) /product="tRNA-Ile" /note="putative" /citation=[1] tRNA 2085..2151 /anticodon=(pos:2114..2116,aa:Gln) /product="tRNA-Gln" /note="putative" /citation=[1] tRNA 2157..2221 /anticodon=(pos:2187..2189,aa:Asp) /product="tRNA-Asp" /note="putative" /citation=[1] rRNA 2222..3465 /note="Locations of 5' and 3' ends imprecisely known. Nucleotides 2222-3293 not determined from both DNA strands." /product="large subunit rRNA" /note="putative" /citation=[1] misc_feature 3466..4623 /function="unknown" /note="May contain replication origin. No known coding function." /note="putative" /citation=[1] tRNA 4624..4690 /anticodon=(pos:4655..4657,aa:Tyr) /product="tRNA-Tyr" /note="putative" /citation=[1] /partial CDS 4692..>5314 /gene="cyt b" /note="putative" /codon_start=1 /translation="MVGNNTAYNTNAPKRVGPWRSTNKLVKIMNDRFYDLPCPVNLNA WWRFGSMLGLCLVIQLLRGLLLSAHYTAHEDMAFDSVVHIMRNVEKGWMLRNIHANGS SMFFICIYAHIARGLYYGSYLDKTVWYFGVHLFLLTMAEAFLGYTLPWGQMSYWGATV ITNMLRVRPVVGERMLRYVWGGXTVCNATLKRFYTLHFLLPFCNSGG" BASE COUNT 1620 a 727 c 1236 g 1727 t 4 others ORIGIN BASE COUNT 397 a 165 c 265 g 415 t 2546 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~aaguu ---------- --a|ucu-uu -|-------- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |--------- acu(aaaa)a g--------- ---------- 301 -----(---- )-----|--- -----acgu( gcaua)auu- ---------- -----<---- 361 ---------- ---------- -------->- ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ---------- -------guu uu(-guga)a 601 aagug-gac- ---------- ---------- ---------- ---------- -----uugaa 661 c<-------- ---------- ----aaa>gu uaguaUAA-- -------(au aaauu)---- 721 -----UUAGU ACCUU(UUGC AUA)AGGGUU U-UUCAAGAu c---aa-uuu a-a------- 781 --------(- ----)----- --------(- ---)---<-- ---gaau>-- ---(-----) 841 ---------- ------uu-a auu-uuCCCG AAUAAAA-GA GAGUUAUUUU UUUGag---- 901 ---------- (--------- -------)-- ---------- ----uuagg- A-AAUC(GUG 961 GUAG-A)GAU U-Ugauu-aa ACUAAAGAAU GGCGGC(UAG AU)ACUAUUC GCGCUUUUAG 1021 AUAUCUGGnn GGCUUAAAA- AAAUGU(-GU AA)GCAUUUU cuuuaa--- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- -uuaagg-gg 1261 uaaAAUUUUU U-GG(GUUAA G)CUGAAAAA UG--gugaaa (uug-aug)u uua-aaaa-u 1321 uu------uu gguu------ ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>ucu aucaggc(uu uaaacu-g)g 1441 cua-uuag|g (uau)-|uag ugu(auuuua )ac|uaa--- ------ ---------| ---------- ---------- 1561 ---------| ---------| auuu|a---- ----(----) ---------- aaaaUAAGCC 1621 |UA-UGAUC- ---------- ---------( ------)-------- 1681 --------|- -GGUCAGUAA UUAUGAuAAA A|ACGAGUA- AAAAUAu--- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||-uaaaUA- 2221 -AAGGUUUUU AAAUGAACUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )-----cuaA 2341 ACUUCU|CGA CUGUUU(AAC AA)AAACAUU UCCUUUUG|- ------(aug uaag------ 2401 )--------- -UAAAAGGUA GUCCCUGCCC AGU|GCAac- ---------- -------uag 2461 a(guaaug)u cu-------- ---------- |guUGUAAAC |GG-C|G-GC GUU(AA-CGU 2521 G)AGCGUC|C (UAA)GG-UA GCGCGAUAAU UU|GCUUUU( CAAUU)GAAG GA|UGGUAUG 2581 AAAGGGUUAA CGAAGAAGGU -GCUGUGUCU AAAAAUUC-a -auuu-AAAC U|A|ACUUUA 2641 A-GG(UGAAG AGG)CCUUUA U-GUAAAAGA AGGACGACAA GACCCUAUGA -|-AGCUUU- 2701 AUCUU|aa-u uggagcu-|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- (----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- ---ggcucuu 2941 -au--A-CGA UUUUGAUG(G GA)GAUCA|G UAGAA(---- -----auaa- ---guc-)UU 3001 CUAC|U|a|u c--------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<-----au auuaaucuua cuaguau>|- ------uucc ua-------- ---(----ac 3181 uu)--|---- -ua-UAUgu- |gug-GCUAG CUACUC|UAG G|GAUAACAG |C-GCAAUUU 3241 CUCCCGAAAG (A--UGGU)A UUGGAGGGGA AGAUUGCGAC CUCGAUGUU| GGCU|U|UAG 3301 AU|AUCC-UA GAGGCG(GA- GA)AGCUUCU GAU-GGU|GG GUC(UGUUC) GCCCUUUAAA 3361 AUCUAACAUG AGCUGAGUUC AGAAC|GGC( GUGA)GCUAG UUCAGUUUCU AUCC|UCUUU 3421 ---|-<---u ugaaaug>-- ---------- ------a-gc uaauu(UUGU AC(GAAA)GG 3481 ACU)uuuuc- gcuaaagc-- ---------- ---|------ -(aau-)--- ---------- 3541 --------gc uuuguc--ac aaaucugu(g guugc-auaa aua)auagg- ---------- 3601 ---------- ----- 3661 --|------( ---)------ ---------| gccu-(auag gaa)-ggguu a~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.P.maxim 3788 bp RNA RNA 30-SEP-1996 DEFINITION Mitochondrion Pecten maximus.; 12S ribosomal RNA; 16S ribosomal RNA; COI gene; cytochrome oxidase subunit 1; NADH dehydrogenase subunit 1; ND1 gene; transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Lys; tRNA-Ala gene; tRNA-Asn gene; tRNA-Gly gene; tRNA-Ile gene. ACCESSION X92688 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; COI gene; cytochrome oxidase subunit 1; NADH dehydrogenase subunit 1; ND1 gene; transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Lys; tRNA-Ala gene; tRNA-Asn gene; tRNA-Gly gene; tRNA-Ile gene. SOURCE Mitochondrion Pecten maximus. ORGANISM Mitochondrion Pecten maximus. REFERENCE 1 (bases 1 to 5529) AUTHORS Sellos,D., Mommerot,M. and Rigaa,A. TITLE Molecular cloning and sequencing of a 5.5kbp fragment flanking the putative origin of replication JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5529) AUTHORS Sellos,D.Y. TITLE Direct Submission JOURNAL Submitted (31-OCT-1995) D.Y. Sellos, College de France/CNRS, Laboratoire de Biologie Marine, BP 225, 29182 Concarneau Cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: X92688 Related sequences: X67246, X82501, X80659 & X80660. BASE COUNT 396 a 195 c 372 g 448 t 2377 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~gguaaauca -------uuu uuu|auu-gu -|-------- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |--------- -cu(uagu)a gaggaga--- ----uagaau 301 u----(---- )-----|aga cguuuaagc( ggcga)ua-- ---------- -----<---- 361 ---------- ---------- -------->- ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ------gaua auagauagua gc(-guga)g 601 ugaag-guua aauaa----- ---------- ---------- ---------a uuaaacagug 661 a<-------- ---------- ------->ag uaucgguggu -------(-- gagc-)---- 721 ---acu-cGC ACCUU(UUGC AUC)AUGGCU UaUACUACU- ----uu-uu- ---------- 781 --------(- ----)----- --------(- ---)---<-a ugcugag>-- ---(-----) 841 ---------- ---------g aaguauCCCG AAAGUUUUGU GAUCUACUUU CUUAcuu--- 901 ---------- (--------- -------)-- ---------- ----uaCAG- GuUGGC(GUU 961 AUAUuU)GCU A-UCUGG-AG AUGGGGAGAU AGUGGC(GAA AU)ACUuuuc gcACUGGUUG 1021 AUAGCUGGUU AUUCCGGAA- AUAUAU(-UU AA)GUAUAg- ucuucggu- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- ucgaagg-gg 1261 ucaGCCCCCU C-AG(GCUAA G)CUGAGGGG GCuauuuuaa (aggaugg)u uaauuaag-a 1321 augga---aa ggcuaa---- ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>gaa gu-gggc(uu gaagg--a)g 1441 uua-ucuu|u (aug)-|gag ugg(guuaaa )cc|aca--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ucuu|ugugu ----(----) ---------- uguaCGGAAU 1621 |cu-cuuuuu -ga------- ---------( ------)-------- 1681 ------uu|- auagagguGA UAAUGU-AAA G|AUGAGUA- GUcgaga--- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)<- -aguuguaag uguuuuaagg ucggggaaag 1861 aaacguaagg uuauguuccg u------->- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||auuuuua- 2221 -aaaaAAGCU AAAGGAACUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )------uaa 2341 GGGGAC|CGC CUGUUU(AUC AA)AAACAUG GCUCCCUG|- ------(agc aaua------ 2401 )--------- -UGGGGGGUC GUGCCUUCCC GGU|GAGcu- ---------- ---------- 2461 -(--ugcg)- ---------- ---------- |ggcuuAAAC |GG-A|C-GC GGU(AA---A 2521 G)--CGUG|C (UAA)GG-UA GCUAAAUUau g-|GCCUAU( UAAUU)GUAG GU|CC-ugUG 2581 AAUGGUUUGA CGAGUUUCCA -ACUGUCUCU AGUUUUUuuu -g-GUGAACU U|G|AAUUGG 2641 A-UG(UGCAA AUG)CUUCCA U-GGGUAAGA AAGACGAGAA GACCCCGUGA -|-AGUUaga 2701 aauuu|aa-g uuauuggg|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- (----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- -ggugaauaa 2941 -uag-c-AGU UUUGGCUG(G GG)CAGCA|A AGGAG(---- -----caaa- -gcuaga)CU 3001 CCUU|u|a|g gg-------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --|- ac-aaac--- auua------ ---(---agg 3181 ug)--|---u gau-uauca- |-ga-AGAAG UUACUC|CGG G|GAUAACAG |C-GUAAUCU 3241 GUCUUGAUAG (U--UCUU)A UAGAUGGGCG GGUUUGCGAC CUCGAUGUU| GGCU|C|UGG 3301 AU|AUCC-UA AGGCUU(gua gg)CGGUCUU GAG-GGU|UG GUU(CGUUC) GCCCAUAAAA 3361 AUCUGACGUG AGCUGAGUUC AGAUC|GGU( GAAA)GCUAG GUCGGUUUCU AUCU|UCUUU 3421 ---|--- ---------- ------g-gg cuuua(GGGU AC(GAAA)GG 3481 ACA)uuuag- uuccaggu-- ---------- ---|------ -(gaug)--- ---------- 3541 --------gc cuguagugug ugauuuua(g aauaauuuua aua)uaaaa- ---------- 3601 ---------- ----- 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.K.tunic 3788 bp RNA RNA 12-OCT-1994 DEFINITION Mitochondrion Katharina tunicata.; . ACCESSION U09810 KEYWORDS . SOURCE Mitochondrion Katharina tunicata. ORGANISM Mitochondrion Katharina tunicata. REFERENCE 1 (bases 1 to 15532) AUTHORS Boore,J.L. and Brown,W.M. TITLE Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata JOURNAL Genetics 138, 423-443 (1994) STANDARD No information REFERENCE 2 (bases 1 to 15532) AUTHORS Boore,J.L. TITLE Direct Submission JOURNAL Submitted (17-MAY-1994) Jeffrey L. Boore, Cell Biology and Neuroanatomy, University of Minnesota, 321 Church St. SE, Minneapolis, MN 55455, USA STANDARD full automatic COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: U09810 NCBI gi: 557273 BASE COUNT 511 a 163 c 168 g 433 t 2513 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~accuu- -------cca aua|aca-au u|aca----- 61 -|-------- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< aauuuuuuaa uucaaaaccc uu-------- 241 ---------- ---->----- |--------- ---(----)- ---------- ----aua--- 301 -----(---- )-----|uaa auuaguauc( caaa-)aaaa ac-uuua--- -----<---- 361 ---------- ---------- -------->- ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- -----auuua aacaacagua cu(-guaa)a 601 ggaaua---- ---------- ---------- ---------- ---------a augaaguaca 661 g<-------- ---------- ------->ua aaguAUAG-- -------(au uaaca)---- 721 -----CUAGU ACCUU(UUGC AUU)AUGGUU U-AACGAGAu u---au-uuu a-u------- 781 --------(- ----)----- --------(- ---)---<-- ----auu>-- ---(-----) 841 ---------- -----aua-a uau-caCUAG AAAAAAA-AG GAGCUAUAUA UAAAC----- 901 ---------- (--------- -------)-- ---------- -----uuua- u-UAAU(GUA 961 GCAA-A)AUU Aaauuaa-uG AUUUAUUUAU AGAAGU(UAA AU)GCAUGCC GUCUUUUUUG 1021 AUAGCUAGUU AAAAGAGAA- AAGUAU(-AU AA)GUACUaa uuuaaau-- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- auuuaaa-uu 1261 acaAUUUUAU U-AG(GCUAA G)CUAAUAAA AU--uuaaaa (gaa-aau)u guuaacc--- 1321 ---------- uuuaauu--- ---------- ---------- ---------- ---------- 1381 ---------- <--------- ---------- ------>aau gu-aagc(uu aauagu-a)g 1441 cua-ucau|a (uua)a|ua- -gu(ucuuua )ac|aaa--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- aauaUCUUUU 1621 |cuuauuuaa ---------- ---------( ------)-------- 1681 --------|- uuaaauuagu uUAUGU-UAA A|AUGAGUA- uuaaaa-u-- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||-uauuau- 2221 -aaAUGUAAA AAAGGAACUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )------uuc 2341 UAGCCC|CGC CUGUUU(AUC AA)AAACAUC GCUCUUUG|A ------(aaa uuau------ 2401 )------UAA -UAAAGAGUC GUGCCUGCCC AGU|GA---- ---------- ---------- 2461 -(--aauu)- ---------- ---------- |---UUAAAC |GG-C|C-GC AGU(AC-CCU 2521 G)ACUGUG|C (UAA)GG-UA GCAUAAUAAC UU|GUUUUU( UAAUU)GAAA GC|UUGUAUG 2581 AAUGGCUUGA CGUGGGCAAG -ACUGUCUCU AUUACAUUaa -auaa-aaAU U|A|AUUUUU 2641 A-AG(UGAAG AAG)CUUAAA U-AAUCUCAA AAGACGAAAA GACCCUAUCG -|-AGCUUU- 2701 AAAUU|ua-u guauaaa-|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- (----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- ----auuuau 2941 -auc-C-AUU UUUAGUUG(G GG)CGACA|A AAGAA(---- -----caaa- uaaagc-)UU 3001 CUUU|U|u|a uu-------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<------- -auguaaauu uauaaau>|- uu-auaGAGC cau------- ---(----aa 3181 uu)--|---- augAUUAAA- |AGA-AAAAG CUACCG|UAG G|GAUAACAG |CaGUuAUUU 3241 UUUCAGAGAG (U--CCUA)A UCGAAGAAAA AGUUUGCGAC CUCGAUGUU| GGAU|U|AAA 3301 GU|AACU-UU UAAGUG(CA- GA)AGCUUAA AAUaAGU|GG GUC(UGUUC) GACCCUUAAA 3361 CCUUUACAUG AUCUGAGUUC AGACC|GGC( GUAA)GCCAG GUUGGUUUCU AUCU|UUGAG 3421 ---|-<---c uaauuau>-- ---------- ------u-ua uGUUU(UAGU AC(GAAA)GG 3481 ACC)AAACa- uaacaaa--- ---------- ---|------ -(uaa-)--- ---------- 3541 ---------u uugccc-acu au~~~~~~(~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.L.terre 3788 bp RNA RNA ~?~???? DEFINITION Lumbricus terrestris. ACCESSION U24570 KEYWORDS No information. SOURCE Lumbricus terrestris. ORGANISM Lumbricus terrestris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: U24570 LOCUS LTU24570 14998 bp DNA circular INV 09-SEP-1995 DEFINITION Lumbricus terrestris mitochondrion, complete genome. ACCESSION U24570 KEYWORDS . SOURCE common earthworm. ORGANISM Mitochondrion Lumbricus terrestris Eukaryotae; mitochondrial eukaryotes; Metazoa; Annelida; Oligochaeta; Haplotaxida; Lumbricina; Lumbricidae; Lumbricus. REFERENCE 1 (bases 1 to 14998) AUTHORS Boore,J.L. and Brown,W.M. TITLE Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris JOURNAL Genetics 141, 305-319 (1995) REFERENCE 2 (bases 1 to 14998) AUTHORS Boore,J.L. and Brown,W.M. TITLE Direct Submission JOURNAL Submitted (10-APR-1995) Jeffrey L. Boore, Cell Biology and Neuroanatomy, University of Minnesota, 321 Church St. SE, 4-135 Jackson Hall, Minneapolis, MN 55455, USA COMMENT NCBI gi: 984290 FEATURES Location/Qualifiers source 1..14998 /organism="Lumbricus terrestris" /mitochondrion CDS 1..>1540 /gene="COI" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984291" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit I" /translation="MRWFYSTNHKDIGTLYFILGVWAGMVGAGMSLLIRIELSQPGAF LGSDQLYNTIVTAHXFVMIFFLVMPVFIGGFGNWLLPLMLGAPDMAFPRLNNMSFWLL PPSLILLVSSAAVEKGAGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGASSILGAIN FITTVINMRWSGLRLERIPLFVWAVLITVVLLLLSLPVLAGAITMLLTDRNLNTSFFD PAGGGDPILYQHLFWFFGHPEVYILILPGFGAISHIVSHYTAKLEPFGALGMIYAMLG IAVLGFIVWAHHMFTVGLDVDTRAYFTAVTMIIAVPTGIKVFSWLATIHGSKIKYETP VLWALGFIFLFTTGGLTGIILSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIFAAFTH WFPLLTGLTLHHRWANAQFFLMFLGVNTTFFPQHFLGLSGMPRRYSDYPDAFMKWNVV SSFGSLLSFVALMLFIFILWEAFASQRSVISSPHMSSALEWSDPILPLDFHNLSETGI ITYPK" tRNA 1541..1601 /product="tRNA-Asn" CDS 1603..>2288 /gene="COII" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984292" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit II" /translation="MPNWGQVMFQDAASSVMLQLVSFHDHALLVLTLVLTVVGYALLA LMLNKQVNRYIMEAQTVETIWTILPALILLVLALPSLRILYITDEVSQPSITVKTIGH QWYWSYEYTDFLNVEMDSYMLPTSDLLPGDYRLLEVDNRMVVPMQLEIRMLITAADVI HSWTVPALGVKVDAVPGRLNQIGFTTTQPGVFYGQCSEICGANHSFMPIAVEAINTKS FMSWVSNFKP" tRNA 2289..2349 /product="tRNA-Asp" CDS 2350..>2509 /gene="ATPase8" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984293" /codon_start=1 /transl_table=5 /product="ATP synthase subunit 8" /translation="MPHLSPMSWITSMLMFWISVSILFSTLWWSNNYLFSSKMTNCAP KSLTPWNWL" tRNA 2510..2573 /product="tRNA-Tyr" tRNA 2572..2633 /product="tRNA-Gly" CDS 2635..>3413 /gene="COIII" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984294" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit III" /translation="MIRQPFHLVEYSPWPLTSSIGAFTLAIGLASWFHNHGFLCLTLA AFLIIVSMIQWWRDVVREGTYMGHHTSLVTTGLRWGMILFITSEVMFFLAFFWAFFHS SLSPTPEIGCSWPPTGIHPLNPFSVPLLNTAVLLASGVTVTWAHHSLMSGKRIDATQA LILTVCLGAYFTFLQAGEYMAAPFSIADSVYGTTFFVATGFHGLHVLIGSSFLAICLA RTWSHHFSAGHHFGFEAAAWYWHFVDVVWICLYLCIYWWGS" tRNA 3414..3482 /product="tRNA-Gln" CDS 3483..>3951 /gene="ND6" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984295" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 6" /translation="MILTSFMLMMIATTFTLYLASTPIVLGVNILMMALLLASTFASF MSSWFAFLIFLIYIGGMLVMFAYFLALTPNQQISNFNIMPYALITLLTFSALTYTTNI KIPTFSDISQGNSILYMSSTAPFLILLALILLLTMVIVVKLTSRSSGPLRPFSP" CDS 3952..>5089 /gene="cytb" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984296" /codon_start=1 /transl_table=5 /product="cytochrome b apoenzyme" /translation="MFKPIRTTHPAIKIINSTLIDLPAPNNISIWWNYGSLLGLCLVI QVLTGLFLSMHYVPNIEMAFSSVALISRDVNYGWLLRSIHANGASMFFLFIYLHAGRG LYYGSYNLSETWNIGVILFLLTMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGKT LVEWIWGGFAVDNATLNRFFAFHFILPFAIMGATILHIMFLHESGSNNPIGLNADSDR IPFHPYYSIKDTLGYTLAISALSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFL WMYAILRSIPNKLGGVMALFAAIVILFIPPLTSVMNKRSLSFYPLNKTMFWGLVASWA ILTWIGGRPVEDPFIIIGQVFTSLYFIYFISSPTISKLWDDSIII" tRNA 5156..5217 /product="tRNA-Trp" CDS 5220..>5913 /gene="ATPase6" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984297" /codon_start=1 /transl_table=5 /product="ATP synthase subunit 6" /translation="MMPDIFSSFDPYMFNTLFPLNSLFLVTNTAIILMIQSSFWVLNA RTSAFKSPVNDTIFTQLSRTSTTHLKGLSTPLSTIFFMLVMINLMGLIPYMFSTSSHL VFTLSLGFPIWLSLMISTFAHSPKKSTAHFLPDGAPDWLNPFLVLIETTSVFVRPLTL SFRLAANMSAGHIVLSLMGIYCAAAWFSSVSSTALLILTAIGYILFEVAICLIQAYIF CLLLSLYSDDHAH" tRNA 5914..5980 /product="tRNA-Arg" misc_feature 5981..6364 /note="Large unassigned region" tRNA 6365..6426 /product="tRNA-His" CDS 6427..>8150 /gene="ND5" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984298" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 5" /translation="MLRMFNTSLVASKLMWVIFTGMLAPTLYMVHCNSTLLLEWNLFS ISSTPMMMTIILDPLGLMFSCTVVMISANILKFSTIYMKEDKFINRFTVLVLLFVLSM NMLIFFPHLIILLLGWDGLGIVSFILVIYYQNPKSLAAGMITALTNRIGDVMLLLAIA WTLNQGHWNILHMWAVDENMYQALVIIIAAMTKSAQMPFSSWLPAAMAAPTPVSALVH SSTLVTAGVFLLIRFYNFLSSVWWFTTFLLFVAVSTTLMAGLSASSECDMKKIIALST LSQLGMMMAAMGLGMAHMAFFHMVTHAMFKALLFVCAGSFIHSHMHSQDLRWMGNLTK QMPTTTSCLIMANLALCGFPFMSGFYSKDMIVEASLYYPHNSLMINLILFAVGLTAFY STRFTMCVVLSPNNCGPYMHLEESNSLTSPMLLLASMSVISGSALTWILPLKQEMMMI PLDQKLKTLMLVTLGALMSWFFLTTTNMTKTCLYIRHPIINYFSCTMWFLVPLSSQFM MKLPMYVSHNYLKLTDQSWLELLGGQGINNVSSKASNIYLASLKSTPMNYLMMSSMLL LVATLVAI" tRNA 8151..8212 /product="tRNA-Phe" tRNA 8213..8277 /product="tRNA-Glu" tRNA 8276..8337 /product="tRNA-Pro" tRNA 8338..8401 /product="tRNA-Thr" CDS 8402..8698 /gene="ND4L" /note="Method: conceptual translation supplied by author. NCBI gi: 984299" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4L" /translation="MYSSIMSLVFLLPIVAVVNLISNQSHFLMTLLSLEGITLSLVLF VPISLSIMSASNVSISVILLTFGACEASLGLSLMVLMSRSYGTDMLNSLTANKC" CDS 8692..>10048 /gene="ND4" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984300" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4" /translation="MLKLQMVLMSLLLLPLIVNLYPWIIALTLSALLLPTCFNLVNSA SYSMFTEYMSSDMMSFTLSALTIWVTVMMILASTKIMHLNMYPKMFMTNLVILLIILI NCFLSPNLIMFYIWFEASLIPTMVLIMTWGYQPERSQASMYLMIYTVAASLPMLMVLC KIFIVSKTAMMPMFMNMEFPMDYPSMALAWVLTLGGFLVKLPMFTVHLWLPKAHVEAP IAGSMILAAILLKLGGYGILRMLSLFHYMAKSTSSLLSSVALVGAVSTSLICLRQSDL KSLIAYSSVGHMGLMVAGALMSSNWGFQAALAMMIAHGLSSSALFVMANMNYELTHTR SLFLMKGLLVLAPTLTMWWFLFTASNMAAPPSINLLSEIMLITSILKMSTSAFILLGL TSFFTAAYCLYMYTSMHHGPLMLTSNPIPQFKVKDLTLMTMHLVPTILIIFKPELITS WS" tRNA 10049..10113 /product="tRNA-Cys" tRNA 10114..10176 /product="tRNA-Met" rRNA 10177..10961 /product="small ribosomal subunit RNA" tRNA 10962..11023 /product="tRNA-Val" rRNA 11025..12269 /product="large ribosomal subunit RNA" tRNA 12270..12330 /product="tRNA-Leu(CUN)" tRNA 12331..12392 /product="tRNA-Ala" tRNA 12393..12455 /product="tRNA-Ser(UCN)" tRNA 12457..12521 /product="tRNA-Leu(UUR)" CDS 12523..>13447 /gene="ND1" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984301" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 1" /translation="MNIPFFTSVLMSLVLALLAMAFYTLMERKFLGYFHLRKGPNKVG LMGLPQPFADAIKLFVKEQAKPNPSNQTPFLFAPTMGLVLALLMWVIYPHSHQSFFIQ FSVLYFLCVSSMNVYTTFLAGWSSNSKYALLGALRGVAQTISYEVSMSLILLSSLIIL STMDFTKMFSYSWILFMFIPLAVVWFITNLAETNRTPFDFAEGESELVSGFNVEYSAG LFALIFMAEYANILIMSLFTSVIFMSTCASGMASDLVLILQTITLAMLFVWVRATYPR MRYDHLMNLTWKSFLPLSLALLMMSIPIAMML" tRNA 13448..13512 /product="tRNA-Ile" tRNA 13513..13576 /product="tRNA-Lys" CDS 13577..>13928 /gene="ND3" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984302" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 3" /translation="MILTALSSAIALLVPIIILGAAWVLASRSTEDREKSSPFECGFD PKSTARIPFSTRFFLLAIIFIVFDIEIVLLMPLPTILHTSDVFTTVTTSVLFLMILLI GLIHEWKEGSLDWSS" tRNA 13929..13992 /product="tRNA-Ser(AGN)" CDS 13993..>14998 /gene="ND2" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984303" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 2" /translation="MKYIKSPTMALAMSTLIMSTLMAVSSANWMFLWGAMELNLLSFI PIMMQSNNNQETEGAVKYFLAQALGSALLLMSSTSMWMTFSMISNFMPLTLMAAIMLK LGSVPCHFWYPSVMASISWVSCLILSSWQKLAPLSILAFLLPQKNMNFMLSMAAMNAL LGGVIGMNQTQLRTIMAYSSIGHIGWMMSLAAVYKPSSCIMYFVVYCILITPLFMTMG YLNMFSTKHMSKLSSYSSTVHMALLMVLLSLGGLPPFTGFMPKLMTIMLLMQSMKIIL LILIAGSIMNLFFYLNIIISSMPLPPHLKNVDSTDIKCSLKFVIPICTLSLGLSPFIM L" BASE COUNT 4476 a 3382 c 2370 g 4766 t 4 others ORIGIN BASE COUNT 460 a 243 c 193 g 349 t 2543 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~gcc-uau guu------- ---|uau-cu u|auaaauaa 61 a|aacu---- ---|----(- -----)-|-- ---------- --|------( -------)-- 121 ---------- ---------- -------(-- --)---|--- ----(----) ---------- 181 ---------( -----)---- ---------< ---------- ---------- ---------- 241 ---------- ---->----- |-----aaua aaa(acac)u u--------- ---------- 301 -----(---- )-----|--- --aaacuga( uaauu)ucau aa-------- ------ ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- -------cuu uacaauagua cu(-auag)a 601 ggaag-ua-- ---------- ---------- ---------- ---------- --gucaacau 661 a<-------- ---------- -----au>aa agua-gug-- -------(gu uuaua)---- 721 -----cacGU ACCUU(GUGC AUC)AUGGUU U-UACAAGCc uc--aaauu- ---------- 781 --------(- ----)----- --------(- ---)---<-- ------->-- ---(-----) 841 ---------- -----aauaa uau-uaCCCG AAUUCUAAGC GAGCUGUCCC UUCAUAGCU- 901 ---------- (--------- ----aag)-- ---------- AGCCCACCA- CUAGUU(GUA 961 GCAU-C)AAC U-UUGGA-AA AUGGGGGGAU AGGGGC(uac au)aCCaauc gcGCUAGAAA 1021 AUCUCUGGUU uucaguaaa- a-uuua(-cc aa)uaaaaca uguagcgu<- ccac------ 1081 ---------- ---------- ---------- -------->- ----|----- -|------|- 1141 ---------- ---------- --(-----)< ---------- ---------- ---------- 1201 ----->---- ---------- ---------- ------|--- ---------- --cuacacug 1261 caaGACUACA G-AG(GAUAA G)CCCUGUAU UC-------- (-------)- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- -gU Au-aGGC(CU AAAAAC-A)G 1441 CCA-CUAA|- (---)-|UAG UAC(CUCACC )GU|AAA--- ------ ---------| ---------- ---------- 1561 ---------| ---------| ----|----- ----(----) ---------- auaaacugaa 1621 |au-uuuuga ---------- ---------( ------)-------- 1681 --------|- uuaaaa--ua uUAUGU-AAA A|AUAAGUAu uaauuuuaua a---(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)<- --ccuaagu- ---------- ---------- 1861 ---------- ---------- -------->- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- ----<----- ---------- ----->---- ---------- ---------- 2161 -|---uacag c(uaccau)g u|augu---- --(-----)- ----auuau- ||-auauuu- 2221 -acaaCUUAU AAAGGAACUU GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )------uuc 2341 UUAUUU|CGA CUGUUU(AAC AA)AAACAUU GCUCUcAG|u a-----(acc uua------- 2401 )--------- aUUaAGAGUA ACUCCUGCCC AGU|GA---- ---------- ---------- 2461 -(--guaa)- ---------- ---------- |---UUCAAC |GG-C|C-GC GGU(AU-CCU 2521 A)ACCGUG|C (AAA)GG-UA GCAUAAUCAC UU|GCCCAU( UAAUU)GUGG GC|UAGAAUG 2581 AA-GGAUAAA CG-AAAUAAa uACUGUCUCU AUAAGccg-c --uuAAAAA- U|A|CCCUCU 2641 A-AC(CGAAG AGU)GUUAGA U-agcGUCGA AGGACAAGAA GACCCUAUAG -|-AGCUUA- 2701 auuua|-aau aaau----|< augaaaaa>- ---------- ---------- ---------- 2761 ---------- ---------- <--------- ---------- ---------- ---------- 2821 ---------- ---------- --->(----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- ------auuu 2941 -ac--uaaaa uUCGGUUG(G GG)CGACC|a ggga-(---- -----auuac cca-uca)-u 3001 cccu|A|a|a ---------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------- --------(- ------)--- ---------- ---------- 3121 --<----caa aagauaaaug uaucaaa>|- -acacUGACC CUU------- ---(----cu 3181 ac)--|---- AAGAUCAUU- |AAA-ACAAG CUACCU|UAG G|GAUAACAG |G-CUAAUCU 3241 CACUAGAGAG (U--CCUU)A UCAAUAGUGA GGAUUGGCCC CUCGAUGUU| GGCU|U|AGG 3301 Ga|AUCU-CU AUGACG(CA- AA)AGUCAUA UAA-AGA|UG GUU(UGUUC) AACCAAUAAC 3361 ACCCUACAUG AGCUGAGUUC AGACC|GCG( UAAG)C-CAG GUUAGUUUCU AUCC|UCGAU 3421 ---|-<---- -cacuuu>-- ---------- -----aU-CU AUUUA(UAGU AC(GAAA)GG 3481 ACC)UAAUU- AGaguaa--- ---------- ---|------ -(uau-)--- ---------- 3541 ---------u uac----aca cagggaau(a aauau--aa- acc)auucua ag-------- 3601 ---------- ----- 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS mt.D.melan 3788 bp RNA RNA ~?~???? DEFINITION Mitochondria Drosophila melanogaster (fruit fly). ACCESSION X53506 KEYWORDS No information. SOURCE Mitochondria Drosophila melanogaster (fruit fly). ORGANISM Mitochondria Drosophila melanogaster (fruit fly). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3788) Corresponding GenBank entry: X53506 ID DM16SR standard; RNA; ORG; 1324 BP. XX AC X53506; XX DT 10-AUG-1990 (annotation) XX DE Drosophila mRNA to mitochondrial 16S ribosomal RNA gene XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Mitochondrion Drosophila melanogaster (fruit fly) OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; OC Pterygota; Neoptera; Holometabola; Diptera; Brachycera; OC Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae. XX RN [1] (bases 1-1324) RA Kobayashi S.; RT ; RL Submitted (22-JUN-1990) on tape to the EMBL Data Library by: RL Kobayashi S., Institute of Biological Sciences, The University of RL Tsukuba, Tsukuba, Ibaraki, 305 Japan. XX RN [2] (bases 1-1324) RA Kobayashi S., Okada M.; RT "Complete cDNA sequence encoding mitochondrial large ribosomal RNA RT of Drosophila melanogaster."; RL Nucleic Acids Res. 18:4592-4592(1990). XX CC *source: strain=Oregon-R; developmental stage=embryo; CC *source: clone=pGF221r2; library=pDE20. CC see Y00610 for overlapping sequence. XX FH Key Location/Qualifiers FH FT rRNA 1..1324 FT /note="16S ribosomal RNA" XX XX SQ Sequence 1324 BP; 537 A; 79 C; 149 G; 559 T; 0 other; BASE COUNT 537 a 79 c 149 g 559 t 2464 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ 61 ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~)~|~~ ~~~~~~~~~~ ~~|~~~~~~( ~~~~~~~)~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~) ~~~~~~~~~~ 181 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~< guuaguuuuu auuuauuaau uuuuauuauu 241 uuuuagaaaa uuau>----- |---uagaa- -au(aacu)a uaaa------ ----uuuaa- 301 -----(---- )-----|agu uuUAGUAUU( GUUUA)AAGA AAaaau---- ------ ---------- ---------- ---------- 421 -----(---- )--------| -(---)---- -(-------) ---------- ---------- 481 ---------- ---------- --------(- --------)- ---------- --------(- 541 -----)---- ---------- ---------- ---------- ------AGUA UU(-GUAA)A 601 AGAAA-AUUG ---------- ---------- ---------- ---------- ---------- 661 -aa aagaaaau-- -------(uu aauuu)---- 721 -----auuGU ACCUU(GUGU AUC)AGUGUU U-AUUAAAUa a---aa-aau aa-------- 781 --------(- ----)----- --------(- ---)---<-- ---auau>-- ---(-----) 841 ---------- ------uuau uuu--uCUCG AUUUUAA-AA GAGUUAAUAU AAUAU----- 901 ---------- (--------- -------)-- ---------- -----uUAA- GUUAAU(GUG 961 AUAA-A)AUU A-UUUA--UA AUAUUAUAUU AGAAAU(GAA AU)GUUAUUC GUUUUUAAAG 1021 GUAUCUAGUU UUUUAAGAA- AUAAAU(-UU A-)AUUUAGA AAUUAUA-<- ---------- 1081 ---------- ---------- ---------- -------->- ----|----- -|------|- 1141 ---------- ---------- --(-----)< aauuuacuua auua(uuuau u)uaauuaau 1201 uaauu>---- ---------- ---------- ------|--- ---------- UAUAAUU--U 1261 UAAUGUUUUA U-GG(GAUAA G)CUAUAAAA UA-aauu--- (-------)- -----uuu-a 1321 --aaaaua-- ---------- ---------- ---------- ---------- ---------- 1381 ---------- <--------- uuaaauagau uuaaua>AAU AU-AUGC(UU AGAAUU-A)G 1441 CAA-UUAU|U (AAA)-|AAA UGU(GUUAUA )AU|UUA--- ------ ---------| ---------- ---------- 1561 ---------| --uauuuau| uaaa|----- ----(----) -uuuuaauua uuuaUUAAAA 1621 |UG-UUAGUU uua------- ---------( a-uuau)<-- ---------- ->-------- 1681 ------ua|a aAUUAAGUAA UAAUGA-UAA A|AUUAGUA- UA-------- ----(----- 1741 )-------|- ---------- --------|- ---------- (-----)--| ---------- 1801 ---------- ---------- --(----)<- ---------- ---------- ---------- 1861 ---------- ---------- -------->- ---------- ---------- -(-------- 1921 )-----|--| ---------- -|-------- ---------- ---------- -------(-- 1981 --------)- -----|---- ---------- |--------- ---(-----) --|------- 2041 ---------- ---------- -------(-- --)------- ---------- ---------- 2101 ---------- -------- ---------- ---------- 2161 -|-------- -(------)- -|-------- --(-----)- ---------- ||-uauauga 2221 aaaGUUUAAA UAAAGAAUUC GGCAAA---- ---------( ----)----- ------|--- 2281 ---------- --------(- ----)----- ---------- ----|-(--- )------aaU 2341 AAUAUU|CGC CUGUUU(AAC AA)AAACAUG UCUUU---|- ------(uug aauuauauau 2401 )--------- ----AAAGUC UAACCUGCCC ACU|GAA--- ---------- ---------- 2461 -(---aau)- ---------- ---------- |--UUUAAAU |GG-C|C-GC AGU(AU-UUU 2521 G)ACUGUG|C (AAA)GGuuA GCAUAAUCAU UA|GUCUUU( UAAUU)GAAG GC|UGGAAUG 2581 AAUGGUUGGA CGAAAUAUUA -ACUGUUUCA UUUAAAAUUU UUAUAGAAUU U|U|AUUUUU 2641 U-AG(UCAAA AAG)CUAAAA U-UUAUUUAA AAGACGAGAA GACCCUAUAA -|-AUCUUU- 2701 AUAUU|-Uuu uuu-auu-|< -------->- ---------- ---------- ---------- 2761 ---------- ---------- (----) ---------- ---------- ---------- 2881 -|-------- ---------- ---------- ---(-----) ---------- ---aauaaau 2941 -aaa-A-AUA UUUUAUUG(G GG)UGAUA|U UAAAA(---- -----UUUAA -AAAAC-)UU 3001 UUAA|U|U|- ---------- -|-------- -(-------) ---------- -|--(-|--- 3061 --)------- ---------u uuuaaaaa(c a-uaaa)uuu au-gaa---- ---------- 3121 --<------- ---------- -----ua>|- ---uuUGAUC cauu------ ---(----aa 3181 u-)--|---a auGAUUAAA- |AAA-UUAAG UUACUU|UAG G|GAUAACAG |C-GUAAUUU 3241 UUUUGGAGAG (U--UCAU)A UCGAUAAAAA AGAUUGCGAC CUCGAUGUU| GGAU|U|AAG 3301 AU|AUAAUUU UGGGUG(UA- GC)CGUUCAA A-U-UUU|AA GUC(UGUUC) GACUUUUAAA 3361 UUCUUACAUG AUCUGAGUUC AAACC|GGU( GUAA)GCCAG GUUGGUUUCU AUCU|UUAAA 3421 ---|-<---- -aaauua>-- ---------- -------uGA UAUUU(UAGU AC(GAAA)GG 3481 ACC)AAAUA- UCaaaaua-- ---------- ---|------ -(auua)--- ---------- 3541 --------ua uuuu------ ---uuaua(a gaaua-uuau uaa)uauaaa a------~~~ 3601 ~~~~~~~~~~ ~~~~~<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 3661 ~~|~~~~~~( ~~~)~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~|~~~ 3721 ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~| // LOCUS E.coli 3788 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION J01695 KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 (bases 1 to 15532) AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 3788) Corresponding GenBank entry: J01695 BASE COUNT 762 a 639 c 912 g 591 t 884 others ORIGIN 1 |GGUUAAGCG A--------- ---CUAAGCG UACACGGUGG AUG|CCC-UG G|CAGUCAGA 61 G|gcgaugAA GGA|CGUG(C UAAUC)U|GC GAUAAGCGUC GG|UAAGGU( GAUAUGA)AC 121 CGUUAUAACC GGCGAUUUCC GAAUGGG(GA AA)CCC|AGU GUGU(UUCG) ACACACUAUC 181 AUUAACUGA( AUCCA)UAGG UUAAUGAGG< ---------- ---------- ---------- 241 ---------- ---->cGAAC |CGGGGGAAC UGA(AACA)U CUAAGUACCC CGAGGAAAAG 301 AAAUC(AACC )GAGAU|UCC CCCAGUAGC( GGCGA)GCGA ACGGGGAGCA GCCCA<---- 361 ---------- ---------- -------->g agccugaauc agugugugug uuaguggaaG 421 CGUCU(GGAA )AGGCGCGC| G(AUA)CAGG G(UGACAGC) CCCguacaca aaaaugcaca 481 ugcugugagc ucgauGAGUA GGGCGGGA(c acguggua)U CCUGUCUGAA UauGGGGG(G 541 ACCAU)CCUC CAAGGCUAAA UACUCCUGAC UGACCGAUAG UGAACCAGUA CC(-GUGA)G 601 GGAAA-GGCG AAAAGAACCC C(GGCGA)GG GGAGUGAAAA AGAACCUGAA ACCGUGUACG 661 U<-------- ---------- ------->AC AAGCAGUGGG AGCACGC(-- -uuag)GCGU 721 GUGACUGCGU ACCUU(UUGU AUA)AUGGGU C-AGCGACU- ----UA-UAU UCUGUAGCAA 781 gguuaacc(g aaua)gggga gccGAAGG(G AAA)CCG<-- ------->AG UCU(UAACU) 841 GGGCGUUAAG UUGCA-GGGU AUA-GACCCG AAACCCG-GU GAUCUAGCCA UGGGCAGGUU 901 GAAGGUUGGG (--------- ---uaac)AC UAACUGGAGG ACCGAACCG- ACUAAU(GUU 961 GAAA-A)AUU A-GCGGA-UG ACUUGUGGCU GGGGGU(GAA AG)GCCAAUC AAACCGGGAG 1021 AUAGCUGGUU CUCCCCGAA- AGCUAU(-UU AG)GUAGCGC CUCGUGAA<- ---------- 1081 ---------- ---------- ---------- -------->U UCAU|CUCCG G|GGGUAG|A 1141 GCACUGUUUC Ggcaaggggg uc(auccc)< ---------- ---------- ---------- 1201 ----->gacu uaccaaccCG AUGCAAACUG CGAAUA|CCG GAGAAUGUUA UCACGGG-AG 1261 ACACACGGCG G-GU(GCUAA C)GUCCGUCG UG-AAGAGGG (AAA-CAA)C CCAGACCG-C 1321 -CA-GC-UAA -----GGU-C CCAAAGUCAU GGUUAAGUGG GAAACGAUGU GGGAAGGCCC 1381 AGACAGCCAG <--------- ---------- ------>GAU GU-UGGC(UU AGAAGC-A)G 1441 CCA-UCAU|U (UAA)A|GAA AGC(GUAAUA )GC|UCACUG GUCG<----- ---------- 1501 ---------- ---------- ------->AG UCGGCCUGC| GCGGAAGAUG UAACGGGGCU 1561 AAACCAUGC| ACCGAAGCU| GCGG|CAGcg acgc(uuau) gcguug-UUG GGUAGGGGAG 1621 |CG-UUCUGU AAGCCUGCGA AGGUGUGCU( GUGA--)<-- ---------- ->GGCAUGCU 1681 GGAGGU--|A UCAGAAGUGC GAAUGC-UGA C|AUAAGUA- ACGAUAAAGC GGGU(gaaaa 1741 )GCCCGCU|C GCCGGAAGAC CAAGGGUU|C CUGUCCAACG (UUAAU)CG| GGGCAGGGUG 1801 AGUCGACCCC UAAGGCGAGG CC(GAAA)<- ---------- ---------- ---------- 1861 ---------- ---------- -------->G GCGUAGUCGA UGGGAAACAG G(uuaauauu 1921 )CCUGU|AC| UUGGUGUUAC U|GCGAAGGG GGGACGGAGA AGGCUAUGUU GGCCGGG(CG 1981 ACGGUUGU)C CCGGU|UUAA GCGUGUAGGC |UGGUUUUCC AGG(CAAAU) CC|GGAAAAU 2041 CAAGGCUGAG GCGUGAUGAC GAGGCAC(UA CG)GUGCUGA AGCAACAAAU GCCCUGCUUC 2101 CAGGAAAAGC CUCU<----- ---------- ----->AAGC AUCAGGUAAC AUCAAAUCGU 2161 A|CCCCAAAC C(GACACA)G G|UGGUCAGG UA(GAGAA)U ACCAAGGCGC ||UUGAGAG- 2221 -AACUCGGGU GAAGGAACUA GGCAAAAUGG UGCCGUAAC( UUCG)GGAGA AGGCAC|GCU 2281 GAUAUGUAGG UGAGGUCC(C UCGC)GGAUG GAGCUGAAAU CAGU|C(GAA )GAUACCAGC 2341 UGGCUG|CAA CUGUUU(AUU AA)AAACACA GCACUGUG|C AAACAC(-GA AA-------- 2401 )GUGGACGUA -UACGGUGUG ACGCCUGCCC GGU|GCCGGA AGGUUAAUUG AUGGGGUUAG 2461 C(--GCAA)G CGAAGCUCUU GAUCGAAGCC |CCGGUAAAC |GG-C|G-GC CGU(AACUAU 2521 A)ACGGUC|C (UAA)GG-UA GCGAAAUUCC UU|GUCGGG( UAAGU)UCCG AC|CUGCACG 2581 AAUGGCGUAA UGAUGGCCAG -GCUGUCUCC ACCCGAGACU -CAGUGAAAU U|G|AACUCG 2641 C-UG(UGAAG AUG)CAGUGU A-CCCGCGGC AAGACGGAAA GACCCCGUGA -|-ACCUUU- 2701 ACUAU|-AGC UUGACACU|< -------->G AACAUUGAGC CUUGAUGUGU AGGAUAGGUG 2761 GGAGGCUUUG AAGUGUGGAC <--------- ---------- ---------- ---------- 2821 ---------- ---------- --->(GCCA) GUCUGCAUGG AGCCGACCUU GAAAUACCAC 2881 C|cuUUAAUG UUUGAUGUUC UAACGUUGAC CCG(UAAUC) CGGGUUGCGG ACAGUGUCUG 2941 -GUGGG-UAG UUUGACUG(G GG)CGGUC|U CCUCC(---- -----UAAAG AGUAAC-)GG 3001 AGGA|G|C|A CGAAGGUUGG C|UAAUCCUG G(ucggaca) UCAGGAGGUU A|GU(G|CAA 3061 UG)GCAUAAG CCAGCUUGAC UGCGAGCG(u gacgg-)CGC GAGCAGGUGC (GAAA)GCAG 3121 GU<------- ---------- ------->|- CAUAGUGAUC CGGUGGU--- UCU(GAAUGG 3181 AA)GG|GCCA UCGCUCAAC- |GGAUAAAAG GUACUC|CGG G|GAUAACAG |G-CUGAUAC 3241 CGCCCAAGAG (U--UCAU)A UCGACGGCGG UGUUUGGCAC CUCGAUGUC| GGCU|C|AUC 3301 AC|AUCC-UG GGGCUG(AA- GU)AGGUCCC AAG-GGU|AU GGC(UGUUC) GCCAUUUAAA 3361 GUGGUACGCG AGCUGGGUUU AGAAC|GUC( GUGA)GACAG UUCGGUCCCU AUCU|GCCGU 3421 GGG|C<---- ------->GC UGGAGAACUG AGGGGGG-CU GCUCC(UAGU AC(GAGA)GG 3481 ACC)GGAGU- GGACGCAUCA CUGGUGUUCG GGU|UGU-CA U(GCCA)AUG GCACUGCCCG 3541 GUAGCUAAAU GCGGAAGAGA UAAGUGCU(G AAAGC--AU- CUA)AGCACG AAACUUGCCC 3601 CGAGAUGAGU UCUCC<---- ---------- ---------- ---------- ---------> 3661 CU|GACCCU( UUA)AGGGUC cugaaggAA| CGUUG(AAGA CGA)CGACGU UGAUAG|GCC 3721 GGGUGUGUAA GCGCA(GCGA )UGCGUUGAG CUA|A|CCGG UACUAAUgaa ccguGAGGCU 3781 UAACCuu| //