LOCUS E.coli 2540 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION J01695 KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 998 others ORIGIN 1 |--------- -----AAAUU GAAGAG-UU( U-GA)UCAU| GGCUCAGAUU GAACGCUGGC 61 GGCAGGCCU- AACACAUGCA AGUCGAACGG U-------AA CAGGAAGAAG (CUUG----- 121 )CUUCUUUGC UG-------- ---|ACGAGU --GGCGGACG GGUGAGUAA- UGUCUGGGA- 181 AACUGC-CUG A--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------G GGGGAUAACU 301 A--------- ---------- ------CUG( GAAA)CGG-U AGCUAAUACC GCAUAA---- 361 ---------- ---------- ---CGUC--- ----(GCAA- --)------- GACCAAA--- 421 ---------- ---------- GAGGGGGACC (------UUC G)---GG|CC UCUUGCCAUC 481 GGA-UGU-|G -CCCAGAU|- GGGAUUA-GC UA-GUAGGUG G-G(G-UAAC GG)CUCACCU 541 A|GGCGACGA UCCCUAGCUG |GUCU(GAGA )GGAUGACCA GC|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUA- UUGCA-CAAU 661 -GGGC-(-GC AA)-GCCU-G A-UGCA|GCC AUGCCGCGUG UAUGAAGAAG GCC(---UUC 721 G--)GG-UU- --GUAAAGUA C|UUUC-AGC GGGGAGGAAG GGAGUAAAG( UUAAUAC)CU 781 UUGCUCAUUG ACGUU-ACCC GCAGAA-GAA GCACCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GGU-GCAAG CGUUAAUCGG AAUUACUGGG CGUAAAGCGC 901 ACGCAGGCG- ---|GUUUGU UAAG---|UC A-GAUGUGAA AUCCCCGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUG GG-------- AA---CUGCA UC-UGA-UAC UGGC-AA--G -CUUGAG-UC 1081 UCGUA----- GAGGGGGGU| AGAAUUCCAG G-UGUAGCG( GUGAAA)UGC GUAGAGAUCU 1141 GGAGGAAUAC CGGU---GGC (GAAG)GCGG CCCC-CUGGA CGA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------GA CUGACGCUCA 1261 G-GUGCGAAA GCGUGGGGAG CAAACAGG(A UU-AGAU-AC )CCUGGUAGU CCAC-GCCGU 1321 AAACGAUGUC G----ACUU| GGAG-GUUGU GCC------- ---------- (-cuuga--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|GG CGUGG-CUUC C-GGAGC--- --(UAAC)GC GU-UAAGUCG 1501 AC|CGCCUGG GGAGUACGGC C(GCAA)GGU UAAAACUCAA AUGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CUGGUCUUGA CA----UC-C A-CGGAA--G UUUUCA(GAG -A-)UGAGA- AUG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CCGU GAGAC|AGGU 1741 GCUGCAUG|G CUGUCGUCA| -G-CUCGU|G UU(GUGA)AA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUA| UCCUUU-G-U UGCC-AGCGG ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uccgg--- )----CCG|G GAACUCAAAG GAGACUGCCA GU(GAUAA-- 2041 -)-------- ---------- ------ACUG GAGGAAGGUG GGGAUGACGU C-AAGUCAUC 2101 AUGGCCCUUA CGACCAGGGC UACACACGUG CUACAAUGGC --GCAUACAA AGAGAA---- 2161 GCGACCUC(- ---------- ---------- ---------G CGA)GAGC-A AGCGGACCUC 2221 AU-AAAGUGC GUCGUAGUCC GGAUUGGAGU C(UGCAACUC )GACUCCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGU GGA(UC--AG A-AU)GCCAC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGUGGGUUGC 2401 AAAAGAAGUA GGU---AGCU U-AACC-(-- --uucg---- --)-GG-AGG GCGCUUACC- 2461 ACUU-UGUGA UUCAUGACUG GGGUGAAGUC GUAACAAGGU AACCGUAGG( GGAA)CCUGC 2521 GGUUGGAUCA CCUCCUUA-| // LOCUS chl.Z.mays 2540 bp RNA RNA ~?~???? DEFINITION chloroplast,Zea mays(maize). ACCESSION Z00028 KEYWORDS No information. SOURCE chloroplast,Zea mays(maize). ORGANISM chloroplast,Zea mays(maize). REFERENCE 1 AUTHORS No information JOURNAL ***FINISH*** Nature 283:739(1980) STANDARD No information COMMENTS Organism information Culture collection: ???? Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 375 a 356 c 476 g 283 t 1050 others ORIGIN 1 |--------- -----CUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGAACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (------GAA A)-----|-- -uccGCCCAA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUGGAAG GCC(---UAC 721 G--)GG-UC- --GUCAACUU C|UUUU-CUC GGAGAAGAAA C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU CAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC AUUGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-CUGUG CG-------- ---------- (acucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAGG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( CUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CUCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cuau-gaguu )------u|G GAACCCUGAA CAGACCGCCG GU(GUUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGAG AGGAUGAGGC C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGG --CGGGACAA AGGGUC---- 2161 GCGAUCUC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACUCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCAGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CcAU)ACGGC GGCGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUAGG AGCUGGCCAG 2401 GUUUGAAGUC AUU---ACCC UuAACC-(-- --guaa---- --)-GG-AGG GGGAUGCCU- 2461 AAGG-CUAGG CUUGCGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.Chlamy 2540 bp RNA RNA 09-JAN-1995 DEFINITION Chlamydomonas humicola 1683. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas humicola 1683. ORGANISM Chlamydomonas humicola 1683. REFERENCE 1 AUTHORS Dawne Vernon JOURNAL No information STANDARD No information BASE COUNT 365 a 287 c 389 g 284 t 1215 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGG G--------- --uaauggcu (uuac----- 121 )ggcuauua- ---------- ---|uuuAGU --GGCGGACG GGUGCGUAA- CACGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------G GGGGAAAACA 301 U--------- ---------- ------CGG( GAAA)CCGAC GCUAAUUCCC CAUGAU---- 361 ---------- ---------- ---AGCU--- ----(gagg- --)------- AGUGAAA--- 421 ---------- ---------- agcgg----- (-----gaaa -)-------- ccgcGCCAAA 481 AGA-GGG-|G -CUUGCGG|- CUGAUUA-GC UA-GUUGGUG G-G(GGUAAA AG)CCUCCCA 541 A|GGCCACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCA-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-UGGA|GCA AUGCCGCGUG GAGGAAGAAG GUC(---uau 721 u--)GA-UU- --GUAAACUC C|UUUU-CUU AGAGAAGaag auc------( -------)-- 781 --------ug aCGGU-AUCU AAGGAA-UAA GCUCCGGCU- AACU-CU-GU G(CCAGCAGU 841 CXCGGU---A A-)UACAGAG |GGA-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUCCGA AAAG---|UC U-AAUGUCAA AUCCAUUGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCAA AG-------- GC---AGGCA UU-GGAgUAC UAUC-GG--A -CUAGAG-UG 1081 CGGAA----- GAGGUAGAG| GGAAUCCCUA G-CGUAACA( GUGAAA)UGU GUAGAUUUUA 1141 GGGAGAACAC CAGC---GGC (GAAG)GCGC UCUA-CUGGG CCG--a---- ---------- 1201 ---------- ---------- ---------- ---------- --------GA CUGACACUGA 1261 G-AGACGAAA GCUACGGGAG CGAAAAGG(A UU-AGAU-AC )CCUUGUAGU CGUA-GCUGU 1321 AAACGAUGGA A----ACUA| AGUG-GGGG- ---------- ---------- (-cuaac--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --CCC-CUGC U-GUAGC--- --(UAAC)GC GU-UAAGUUU 1501 CC|CGCCUGG GGAGUXUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGAAXX-XX 1561 A--------C AAGCGGUGGA UUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-U C-CAGAA--U CCUCCA(GAA -A-)UGGGG- GAG---uguu 1681 ugaaag---( uucuu)---c uuucauaaa- ---------- -----|CUGG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CG(UUGA)CG UGUACGG(-U UAAGU)CCUG 1801 CAAC-GAGCG CAACCCUCG| UCUUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --aau----- )-------|- --ACUCUAAA GAGACUGCUC GC(G-CAA-- 2041 -)-------- ---------- ------GCUU GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC CACACACGUA AUACAAUGGU --UGGGACAA UCAGAA---- 2161 GCUAACCC(- ---------- ---------- ---------G CGA)GGGCAA UGCGAAUCUG 2221 CU-AAACUCA ACCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CAG(UC--AG CUAU)AUGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CUCGGG UUUUGUACAC ACnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2401 nnnnnnnnnn nnn---nnnn n-nnnn-(-- --nnnn---- --)nnn-nnn nnnnnnnnn- 2461 nnnn-nnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.Polyto 2540 bp RNA RNA 09-JAN-1995 DEFINITION Polytoma 62-27 1683. ACCESSION No information KEYWORDS No information. SOURCE Polytoma 62-27 1683. ORGANISM Polytoma 62-27 1683. REFERENCE 1 AUTHORS Dawne Vernon JOURNAL No information STANDARD No information BASE COUNT 384 a 264 c 372 g 291 t 1229 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnAU GAACGCUAGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGA G--------- -----acuua (guaa----- 121 )uaagu---- ---------- ---|uauAGU --GGCGGACG GGUGCGUAA- CGCGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------CAGA ---------G GGGGAUAACA 301 U--------- ---------- ------CGG( GAAA)CUGUU GAUAAUACCC CAUAAU---- 361 ---------- ---------- ---GACU--- ----(gagg- --)------- AGUUAAA--- 421 ---------- ---------- accaugu--- (-----aaaa -)------gc auggGCUGAA 481 AGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGAG G-G(GGUAAA AG)CCUCCCA 541 A|GGCCAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGAAGAAG GUC(---ugu 721 g--)GA-UUX -+GUAAACUC C|UUUU-UUC AGAGAAGaau aag------( -------)-- 781 --------ug aCGGU-AUCU GAAGAA-UAA GCUCCGGCU- AACU-AU-GU G(CCAGCAGC 841 CXCGGU---A A-)UACAUAG |GGA-GCAAG CGUUAUCCGG GAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAA AAAG---|UC U-ACUGUCAA AUAUCAAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU GG-------- AC---AGGCG GU-AGAgUAC UUUU-AG--A -CUAGAG-UG 1081 CGGUA----- GAGGUAGAG| GGAAUCCCUA G-CGUAACG( GUGAAA)UGU GUAGAUUUUA 1141 GGGAGAACAC CAGC---GGC (GAAG)GCGC UCUA-CUGGG CCG--u---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCUAAAGGAG UGAAAAGG(A UU-AGAU-AC )CCUUGUAAU UUUA-GCUGU 1321 AAACGAUGGA A----ACUA| AGUG-CUGC- ---------- ---------- (-cgaau--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --GCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUUU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGAGUCUAC 1561 A--------C AAGAGGUGGA UUAUGUGGUU UAAUUCG(AU GCAACA)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-C U-CAGAA--U UUUUCA(GAA -A-)UGGAA- AAG---ugcc 1681 a--------( gaaa-)---- ----uggaa- ---------- -----|CUGG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CG(UUGA)CG UGUAUGG(-U UAAGU)CCUG 1801 CAAC-GAGCG CAACCCUCG| UCUUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --aaua---- )-------|- --ACUCUAAA GAGACUGCCA GU(G-UAA-- 2041 -)-------- ---------- ------ACUG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC UACACACGUA AUACAAUGGU --UGAUACAA UCAGAA---- 2161 GCAACCCU(- ---------- ---------- ---------G CGA)AGGC-U AGCAAAUCUG 2221 CU-AAAAUCA GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CUCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCUAGA CUUUGUACAC ACnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2401 nnnnnnnnnn nnn---nnnn n-nnnn-(-- --nnnn---- --)nnn-nnn nnnnnnnnn- 2461 nnnn-nnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.Poly.o 2540 bp RNA RNA 09-JAN-1995 DEFINITION Polytoma obtusum 1683. ACCESSION No information KEYWORDS No information. SOURCE Polytoma obtusum 1683. ORGANISM Polytoma obtusum 1683. REFERENCE 1 AUTHORS Dawne Vernon JOURNAL No information STANDARD No information BASE COUNT 409 a 254 c 356 g 310 t 1211 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnAGGU GAUCGCUAGC 61 XGCAUGCUU- AACACAUGCA AGUCGUACGA G-------ua uaauauuggu (cguaaa-aa 121 )accgagauu aua------- ---|cu-AGU --GGCGGACG GGUGCGUAA- CACGUGAGA- 181 AUCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGUA ---------G AGGGAUAACA 301 U--------- ---------- ------CGG( GAAA)CCGUA UAUUAAUACC UCGUAU---- 361 ---------- ---------- ---AACU--- ----(gaag- --)------- AGUAAAA--- 421 ---------- ---------- gcgg------ (-----gaaa -)-------c cgcgACUAAA 481 AGA-GGA-|G -CUUGCGG|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU GG)CUUACCA 541 A|GGUCACGA UCAGUAUCUG |GUUU(GAGA )GAAUGAUCA GA|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GACAG-CAG UGGCUAAUA- UUUCA-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-UGGA|GCA AUGCCGCGUG GAGGAUGAAG GUC(---uau 721 u--)GA-UU- --GUAAACUC C|UUUU-ACC GGGGAAGaaa aa-------( -------)-- 781 --------ug aCGUU-ACCC GGGGAA-UAA GAAUCGUCU- AACU-UU-GU G(CCAGCAGA 841 CGCGGU---A A-)UACAGGG |GAU-UCAAG CGAUACCUCG UAUGAUUGGG CGUAAAGCGU 901 CUGUAGGCG- ---|GUUUUA CAAG---|UU U-AAUGUAAA AGACUUAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCAA AG-------- GA---AAGCA UU-AAA-AAC UAUA-AA--A -CUAGAG-UU 1081 CGGAA----- GAGGUAGAG| GGAAUUCCUA A-AGGAACA( GUGAAA)UGU GUAGAUAUUA 1141 GGAGGAACAC CAGA---GGC (GAAG)GCGC UCUA-CUGGG ACGX+a---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACGCCGA 1261 G-AGACGAAA GCUAUGGUAG CGAACAAG(A UU-AGAU-AC )CUUGGUAGU CAUA-GCCGU 1321 AAACGAUGGA A----ACUA| AGUG-GGG-- ---------- ---------- (-gauac--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- ---CU-CUGC U-GUACG--- --(UAAC)GC GU-UAAGUUU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGAACCUGC 1561 A--------C AAUCAGUGGA UCAUGUGGUU UAAUCUG(AU GCAACA)CGA AGAACCUUAC 1621 CAGGUUUUGA CA----UG-C C-CAGAA--U AUCUUA(GAA -A-)UAAGA- UAG---uguu 1681 aauauac--( uaa--)--gu cuauuaaaa- ---------- -----|CUGG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CG(UUGA)CG UGUAUGG(-U UAAGU)CCUG 1801 CAAC-GAGCG CAACCCUCG| UCUUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuu---- )-------|- --ACUCUAAA GAGACUGCUU AC(G-UAA-- 2041 -)-------- ---------- ------GUUU GAGGAAGGUG GGGAUUACGU C-AAGUCAUC 2101 AUGCCCCUUA UAACCUGGGC UACACACGUG AUACAAUGGU --UGGGACAA UGAGAA---- 2161 GCAACUCC(- ---------- ---------- ---------G CGA)GGAC-U AGCGAAUCUA 2221 CA--AACCCA GCCCCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGAUGGAAU 2281 UGAU------ AGUAAU-CGC CAG(UC--AG CUAU)AUGGC GGUGAAUAU- -GUC------ 2341 ---------- ----ACUAGG UUUUGUACAC nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2401 nnnnnnnnnn nnn---nnnn n-nnnn-(-- --nnnn---- --)nnn-nnn nnnnnnnnn- 2461 nnnn-nnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.Poly.u 2540 bp RNA RNA 09-JAN-1995 DEFINITION Polytoma uvella 964 1683. ACCESSION No information KEYWORDS No information. SOURCE Polytoma uvella 964 1683. ORGANISM Polytoma uvella 964 1683. REFERENCE 1 AUTHORS Dawne Vernon JOURNAL No information STANDARD No information BASE COUNT 490 a 290 c 411 g 395 t 954 others ORIGIN 1 |--------- ---ACUUCGA AAAGAG-UU( --GA)UCCU| GGCUCAAGGU GAUCGCUGGC 61 UGCAUGCUU- AACACAUGCA AGUCGGACGA A-------ua ugguguaagg (aucga---- 121 )ccuuc--uu gua------- ---|ua-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUAC-CUU uuauauauuu aauuaaaaac aaaugaaguu uuguuauuuu ugaugugauu 241 aauuaaauau aagaguuuaa cuuaauaauu aaauuuuGUA ---------G AGGGAUAACA 301 U--------- ---------- ------CGG( GAAA)CCGCU UAUUAAUACC UCGUAU---- 361 ---------- ---------- ---AGCU--- ----(gaag- --)------- AGUUAUA--- 421 ---------- ---------- gcggu----- (--cuauaaa a)-----|-a cggcGACUUG 481 AGA-UGA-|G -CUUGCGG|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAA GG)CUUACCA 541 A|GGCCACGA UCAGUAUCUG |GUUU(GAGA )GAAUGACCA GA|CACACUG GGA(CUGAGA 601 UACG)GCCCA GAC--UCC(U A-CG)GG-A- -GACAG-CAG UGGCUAAUA- UUUCA-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-UGAA|GCA AUGCCGCGUG GAGGAUUAAG AUC(---uau 721 u--)GA-UU- --GUAAACUC C|UUUU-AUC GGGGAAGaaa aac------( -------)-- 781 --------ug aCGUU-ACCU GAGGAA-UAA GAAUCGUCU- AACU-UU-GU G(CCACGAGA 841 CACGGU---A A-)UACAGGG |GAU-UCAAG CGAUACCUGG UAUGAUUGGG CGUAAAGGGU 901 CUGUAGGCG- ---|GUUACA CAAG---|UU U-AAUGUAAA AGACUUAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCAA AG-------- GG---UUGCA UU-AAA-AAC UAUG-UU--A -CUAGAG-UU 1081 CGGAA----- GAAGUAGAG| GGAAUUCCUA A-AGGAACA( GUGAAA)UGU GUAGAUAUUA 1141 GGAGGAACAC CAGA---GGC (GAAA)GCGC UCUA-CUAGG ACGX+a---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACGCUGA 1261 G-AGACGAAA GCUAUGGUAG CGAACAAG(A UU-AGAU-AC )CUUGGUAGU CAUA-GCUGU 1321 AXXCGAUGGA A----ACUA| AGUA-GGGG- ---------- ---------- (--gaca--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --CCU-CUGC U-GUACG--- --(UAAC)GC GU-UAAGUUU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGAACCUGC 1561 A--------C AAUCGGUGGA UCAUGUGGUU UAAUCUG(AU GCAACA)CGA AGAACCUUAC 1621 CAGGUUUUGA CA----UA-C C-CAGAA--U GCCCUA(GAA -A-)UAGGG- UAG---uguu 1681 uauaga---( uuaag)---u cuauaaaaa- ---------- -----|CUGG GCUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CG(UUGA)CG UGUACGG(-U UAAGU)CCUU 1801 CAAC-GAGCG CAACCCUCG| UCUUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuu---- )-------|- --ACUCUAAA GAGACUGCAA AC(G-UAA-- 2041 -)-------- ---------- ------GUUU GAGGAAGGUG GGGAUUACGU C-AAGUCAUC 2101 AUGCCCCUUA UAACCUGGGC UACACACGUG AUACAAUGGU --UGGGACAA UGAGAA---- 2161 GCAACUCC(- ---------- ---------- ---------G CGA)GGAU-U AGCGAAUCUA 2221 CA--AACCCA GCCCCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGGUGGA-U 2281 CGAU------ AGUAAU-CGC CAG(UC--AG CUAU)AUGGC GGUGAAUAC- -GUA------ 2341 ---------- ----ACCAGG UUUUGUACAC ACCGCCCGUC ACACUCCGAA AGGAAAGGGG 2401 GUCUAAGUAC CUU----UAU U-AACC-(-- --gaaa---- --)-GG-AGG UAAUGGUACa 2461 AAGC-CUCUA UCUCUGAUUG GAGUGAAGUC GUAACAAGGU AAUGGUUCC( AGAA)GGAGC 2521 UGUUGGAUaA CaUaCAAA-| // LOCUS chl.Pil.th 2540 bp RNA RNA 21-AUG-1997 DEFINITION Chloroplast Pilostyles thurberi.; . ACCESSION U67741 KEYWORDS . SOURCE Chloroplast Pilostyles thurberi. ORGANISM Chloroplast Pilostyles thurberi. REFERENCE 1 (bases 1 to 1464) AUTHORS Nickrent,D.L., Duff,R.J. and Konings,D.A.M. TITLE Structural analyses of plastid-encoded 16S rRNAs of holoparasitic angiosperms JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1464) AUTHORS Nickrent,D.L. and Duff,R.J. TITLE Direct Submission JOURNAL Submitted (22-AUG-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U67741 BASE COUNT 484 a 195 c 290 g 495 t 1076 others ORIGIN 1 |--------- ----nnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnnnnnn 61 nnnnnnnnn- nACACAUGCA AGUUUUACUu u--------u aucuaacacu (uuuuuauuu 121 )gguguuuug auaauaaauu -----aaAGU AAGGCGAACG GGUGAGUAA- UAUAUAAGA- 181 AUCUAC-cau u--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- -----caauu ---------- ---------- 301 ---------- ---------- ---------( ----)----- ---------- ---------- 361 ---------- ---------- ---------- ----(----- --)------- ---------- 421 ---------- ---------- ---------- (-----uuua u)-----|-- ----aauuaa 481 ugA-UGA-|G -CUUAUAU|- CUAAUUA-GU UU-GUUGGCG G-G(G-UAA- GG)CCUACCA 541 A|GACUUUGA UUAGUAGUUG |GUUU(GGAA )GAAUGAUCA GC|CACACUA GGA(CUGAAA 601 CAAG)GCCUA GACuaauu(u u-uu)aa-uu agUCAG-CAG UGGGGgAUA- UUCUG-CAAU 661 -GGGCA(aua ag)UGCCU-G A-CAGA|GUA AUAUCGAGUu aa-------- cuc(---aaa 721 u--)ga-gu- --------uu a|uuuc-uua aaagauuaau ---------( -------)-- 781 ------uaag aaGGU-Auuu uaagaa--AA GUAUUGGCU- AACUcCU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGGG |AAU-GCAAG CGUUAUUCGG UUUAAUUAGG UGUAAAAGGU 901 UguUAGGCu- ---|UUUCGU UAAG---|UG ---------- ---------- (uuuuguuaa 961 aguccaaaau uauuuaacca uuccuuaauu auaaauuuua uaguuuuuuu ggggugcauu 1021 u---)----- ---------- ---------- ----ca-uac uaac-ag--A -AUGGAG-UA 1081 UUAAAcacaa AAGAUAGAU| AGAAccuuau gaugaa-ca( auuaaa)ug- uuuuaaauau 1141 aagggacugc caau---ggu (gaag)acaa ucua-uuaug uua--a---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACGCUGA 1261 GucaACGAAA GC-acGGGAG -AAAUGGG(A UUuAGAG-AC )CCCAGUAAU CGUAuGCUGU 1321 AAAUUUUGAA U----ACUA| GGCU-AUAAA caaaAGAAGA cuuuacuGGu uccauuaacu 1381 caguuuauuG Gaau(gcaa) guuuUCuuuu CCuuuUUUUU UUaa|uauau auuaaua(uu 1441 uua)uauaua guauaua|uu uUUUG-UGGC C-ACAGU--- --(UAAC)AC GUuUAAGUAU 1501 UG|UACCUGG AAAGUACGUC C(GCAA)GGA UGAAAUUCAA AGGAAUUGGC GUGAAUCUUU 1561 AcauuuuuaC -AACGAUGGA GCAUGUGGUU UAAUUCG(AC AAAGAG)CGA AAAACAUUAU 1621 CAAGGUUUAA C--------- ---------- ------(--- ---)------ ---------- 1681 ---------( -----)---- ---------- ---------- -----|---- -----|-GGU 1741 GGUGCAUG|G CUGUua---| ----UCGU|G CU(GUGA)AG UGUCAGG(-U UAAGU)CCUG 1801 uaAC-GAGCG CAACCCUUA| guaauuug-u uguu---uaa uu-------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ---aua---- )--aauaa|a gaacu-aauu auGACUucuu aa-uaauaca 2041 u)-------- ---------- -----aaaaa gAGGAA-G-A AGGACAAAAA C-AAGuaaaC 2101 UUGCCCC-ua uACUUUGAGC AACACGCGUG CUACAAUGGA -AAAUAACAA Ag-------- 2161 --------(- ---------- ---------- --uuuuauu- ---)------ ---------c 2221 uu-AAAUAUU UCCUCAGUUC GGAUUGUAua uGGaUuaaaa uGCCUACAUG AAGUUGAAAU 2281 CGUAuuuuga AGUAAU-CGU aa-(aa--AG gucc)-uuAC GGUGAAgauu uGUUuuaaau 2341 uuuuuuuuau uucguaAAGG UUUCGUACAU ACUGCCCGUC ACGUUCCGAu gauuacguuu 2401 uacuuaaagu uuuu------ ----CC-(-- --uaa----- --)-GG-A-- --aagauga- 2461 augu-aaaau u--guCAUUG UAAUGAAGUC GUAACAAGGU AGCUGUGUC( GGAA)GGUGC 2521 GGnnnnnnnn nnnnnnnn-| // LOCUS chl.C.cocc 2540 bp RNA RNA ~?~???? DEFINITION Cynomorium coccineum. ACCESSION U67743 KEYWORDS No information. SOURCE Cynomorium coccineum. ORGANISM Cynomorium coccineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U67743 chl16sco.seq cynomorium coccineum ; 1480 chl16sco. chl16sco. BASE COUNT 397 a 329 c 441 g 313 t 1060 others ORIGIN 1 |--------- ----UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUUGUACUG UA-------- --------ua (uaa------ 121 )ua------- ---------- ---|UAUAGU --GGCGCACG GGUGCAUAA- CACGUAAGA- 181 ACCUAC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACG 301 U--------- ---------- ------CUG( GAAA)UGG-C CGAAAAUACC CCGUUA---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAUA--- 421 ---------- ---------- GGA------- (------GGA A)-----|-- -UUCGCCCAA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUGCCGCGUG GAGGUAAAAG GCU(---UAU 721 G--)GG-UC- --AUGAACUU C|UUUU-CCC AGCGAAuaaa a--------( -------)-- 781 -------aug aCGGU-AUCU GGAGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGAGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GUCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GU-------- -A---AUACG GU-GGA-AAC UAUC-AA--G -CUUGAG-UA 1081 CGUUA----- GGGGCAGAG| GGAAUUUAUG G-UGGAGCG( GUUAUA)UGU GUAGAGAUCA 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG ACG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCGGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGUG U--------- ---------- (-aucgacc) 1381 c--------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- GUGCA-GUAC U-GUAGC--- --(UAAC)GC AU-UAAGUAU 1501 CC|CGCCUGG GGAGUAUGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGGC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUAUC(GAA -A-)GAUAG- GGG---UGCC 1681 ---------( CUCG-)---- -----GGAA- ---------- -----|CGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCC 1801 UAAC-GAGCG CAACCCUCA| UGUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ---auaua-- )-------|G GAACUCUGAG CAGACUGCCG GU(UAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAGGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGU --CGGGACAA AGGGCC---- 2161 GCAAUACC(- ---------- ---------- ---------G CGA)GGGC-G AGCUAACCCC 2221 AA-AAACCCU UCCUCAGUUC GGAUUGAAGG C(UGCAACUC )GCCUACAUG AAGUAGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUU- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACUGCCCGUC ACACUAUGGG AGCUGGGCAU 2401 ACCCGAA--- AUU---ACCU U-AACU-(-- acaauuuua- --)-AGuAGG GGGAUGACG- 2461 AAGG-UAGGA CUAGUGACUA GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.H.afri 2540 bp RNA RNA ~?~???? DEFINITION Hydnora africana. ACCESSION U67745 KEYWORDS No information. SOURCE Hydnora africana. ORGANISM Hydnora africana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U67745 chl16shy.seq hydnora africana ; 1504 chl16shy. chl16shy. BASE COUNT 487 a 277 c 372 g 368 t 1036 others ORIGIN 1 |--------- ----UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUUGAACGA GA-------- -----aauag (aacaa---- 121 )cuauu---- ---------- ---|UCUAGU --AGCGAACG GGUGCGUAAU UACAUAAGA- 181 ACUUAU-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UUAa gaaggaaaua acaaAUAACA 301 A--------- ---------- ------aug( GAAA)cau-U UGCUAAUGUC CUAUAA---- 361 ---------- ---------- ----GCU--- ----(GAAA- --)------- AGUAAAA--- 421 ---------- ---------- GGA------- (-----uuaa a)-----|-- -UCCACUAAA 481 GGU-AAG-|G -CUUAUGU|- C----UA-GU UA-GUUGGUA A-G(G-UAAC AG)CUUAACA 541 A|GACAAUGA UCAGUAAUUG |GUCU(GAGA )GGAUGAUCA AU|CACACUG GAA(CUGAGA 601 UAAG)GUCCA GAC--UCC(U A-CG)GG-U- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGG|GCA AUGUUGCGUG AAGGCAGAAG GCC(---GAU 721 A--)GG-UU- --GUAAACUU C|UUUU-GUG AGAAAAuaag ga-------( -------)-- 781 -----aaaug aCAGU-AUCU CAAGAA-UAA GCAUCGGCU- AACU-UU-GU G(CCAGCAGC 841 CGCGGU---G A-)UACAGAG |GAU-GCGAG CAUUAUCCGG AAUUAUUGGG CGUAAAGUGU 901 UUUAAGGUG- ---|GCUUUA UAAG---|UC U-AUCGUUAA AUCUCAGAGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACUCU GA-------- UU---AGGCG AU-UGA---C UAUU-AA--G -CUAGAGCUU 1081 UGAAU----- AAAGCAAGG| GGAAUUUCUA A-UGAAGCG( GUUAAA)UGC GUUGAGAUUG 1141 GAAAGAACAC CAAG---GGC (GAAA)GCAC UCUG-CUGGG CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA UUGACACUGA 1261 U-AAACGAAA GCUAGGGUAG CGAGAGGG(A UU-AGAC-AC )CCCAAUAGU CCUA-GCUGU 1321 AAACAAUGGA U----ACUU| AGC-AUUACU AU-------- ---------- (augaaaag) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-A UAGCU-AAGC UuAAAGC--- --(UAAC)GC AA-UAAGUAU 1501 CC|CGCCUGG GAAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGGC GGGGGUUCAC 1561 G--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGAUUGU -A----UG-U C--GUAA--U CUUUCU(GAA AA-)AGUAA- GA----uacg 1681 uauuuauuu( -aau-)aaau aaauacgua- ---------- -----|---G A-CAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CCCGU|G CU(GUCA)AG CGUAGGG(-U UAACU)CCCA 1801 UAAC-GGGCG CAACUCCCA| UGUUUA-G-U UACC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --aauuuau- )-------|G GUACUCUAAA CAAACAGCUA AU(GAUAA-- 2041 -)-------- ---------a uacuaaAUUA GAGGAAGGUG GGGAAGACGU C-AAGUCAUC 2101 AUGCCCUUUA UACUCUGGGC UACACGCGUG CUACAAUGGC --UGGGACAA AAUGUU---- 2161 GCAAUUCU(- ---------- ---------- ---------G UAA)AGAUAU AGCAAAACAU 2221 AA--AACCCA GUCUCAGUUC GGAUU-CGGG C(UGCAACUC )GCCCGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CAAU)ACAGC GGUGAAUAA- -GUC------ 2341 ---------- ----ACCGGA CCUUGUACAC ACCGCCCGUC ACACUCAGGA AAUUGGUCAU 2401 GCCcuaacuc auu------- -------(-- -----uuaau au)------- --aaugaua- 2461 aagg-ugaGG CUGGUAACUA GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.M.yama 2540 bp RNA RNA ~?~???? DEFINITION Mitrastema yamamotoi. ACCESSION U67742 KEYWORDS No information. SOURCE Mitrastema yamamotoi. ORGANISM Mitrastema yamamotoi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U67742 chl16smy.seq mitrastema yamamotoi ; 1465 chl16smy. chl16smy. BASE COUNT 438 a 287 c 391 g 349 t 1075 others ORIGIN 1 |--------- ----UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GACUGGCGGC 61 UGUAUGCUU- AACACAUGCA AGUCUUACUA UA-------- ---------- (aaac----- 121 )--------- ---------- ---|UUUAGU --GGCGAACG GGUGAGUGA- CGCGUAAGA- 181 AUCUGC-CCC U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UUAG ---------- --AAguaACG 301 A--------- ---------- ------UGG( GAAA)CUA-U UGCUAAUAUC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAAG- --)------- AGUUAAA--- 421 ---------- ---------- AGAa------ (------gaa -)-----|-- uUCUCUACAG 481 GGA-AGA-|G -CUUACGU|- CUGAUUA-GC UA-GUUGGUA C-G(A-UAAU AG)CUUACCA 541 A|GGCUGUGA UCAGGAGCUA |GUUC(GAGA )GGAUGAUCA GC|CACACUG GAA(CUGAGA 601 CAAG)GUCCA GAC--UCC(U A-UG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGG|GCA AUACCGCGUG AAGGUAGAAG GCC(---UAC 721 G--)GG-UC- --GUAAACUU C|UUUU-ACC AAAAAAgaac ua-------( -------)-- 781 ---------- aCAGU-AUUU GGGGAA-UAA GCAUCGGCU- AACU-UU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGAGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC U-GCUGUCAA AUACCUAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCG GG-------- GA---AGGCA AC-AGU-GAC UAAA-AA--G -CUUGAG-UA 1081 UGAUA----- AGGGAAGAG| GGAAUUUCUG A-AGGAGCG( AUGAAA)UGC AUAGAUAUCA 1141 GAAAGAACGC CGAA---GGU (GAAA)ACGC UCUU-CUGUA UUU-ga---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACAUUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACGAUGGA UggauACUA| AGUA-UUGUA UG-------- ---------- (-uuugauc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUUCA-GUAC U-ACAAC--- --(UAAC)GU GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCUCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA Cga---UGaU CcGCGAA--U CUUUUU(GAA -A-)AUUAA- GAG---UGCC 1681 ---------( UUAG-)---- -----GGAA- ---------- -----|UGCG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUCA)GG UGUUGUG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUA| UAUUUA-G-U UACC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuguuu-- )-------|G GAACUCUAAA UAAACAGCUG GA(AAUAA-- 2041 -)-------- ---------- ------UCUA GAGGAAGGAG AGGAUUACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC AACACACGUG CUACAAUGGU --CGGGACAA AGAAuaauuu 2161 GUGAACUU(- ---------- ---------- ---------G CAA)GAGU-G AACUAAUUUC 2221 AA--AACCCG AUCACAGUUC GAAUUGUAGG C(UGAAACUC )GCCUACAUG AAGCCGAAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUAU- -GUU------ 2341 ---------- ----ACCGGG CCUUGUACAC ACCGCCCGUC ACACUCUGGA AGUUGUCCCU 2401 GUUCUAAauc a--------- -------(-- -aaaaa---- --)------- ----ugacu- 2461 AAAA-UAGAG UUAAUGACUA GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.C.rube 2540 bp RNA RNA ~?~???? DEFINITION Cytinus ruber. ACCESSION U47845 KEYWORDS No information. SOURCE Cytinus ruber. ORGANISM Cytinus ruber. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U47845 chl16scr.seq cytinus ruber ; 1497 chl16scr. chl16scr. BASE COUNT 418 a 321 c 427 g 331 t 1043 others ORIGIN 1 |--------- ----UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGU 61 GGCAUGCUU- AACACAUGCA AGUUGAACGU AA-------- --------aa (ugguc---- 121 )uu------- ---------- ---|UUAAGU --GGCGAACG GGUGAGUAA- CGCGUAAGA- 181 AUCUGU-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------UUG( GAAA)CGU-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----ACU--- ----(GAGG- --)------- AGUAAAA--- 421 ---------- ---------- GGA------- (-----GGAA A)-----|-- -UCCGCCCAA 481 GUA-GGA-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-AAAU AG)CUUACCA 541 A|GGCAAUAA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCU(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-UA AA)-G-CU-G A-CGGA|GCA AUGCCACGUG AAGGUAAAAG GCC(---CCU 721 G--)GG-UC- --AUGAACUU C|UUUU-ACC AGAgaauaaa gc-------( -------)-- 781 ------aaug aCGGU-AUCU GGUGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGA---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG CGUAAAGCGU 901 CUGUAGAUG- ---|GCUUUU UAAG---|UC U-GCCAUAAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GU-------- AC---AGGUG GU-AGA-AAC UAUA-AA--G ACUUGAG-UU 1081 UGGUA----- GGGGCAGAG| GGAAUUUUCG G-UGGAGCG( AUAAAA)UGC AUAGAGAUCG 1141 GAAAGAACAC CAAU---GGC (GAAG)GCAC UCUG-CUGGG CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACAUUGA 1261 G-AGACUAAA GCUAGGGGAG CAAAUGGG(A UU-AGGU-AC )CCCAGUAGU CCUA-GCCAU 1321 AAACGAUGGA U----ACCA| AGUG-CUGUG UG-------- ---------- (aaucgauc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUGCA-GUGC U-CUAGC--- --(AAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GUGGGCCCGC 1561 A--------C AAGCGAUGGA GCAUGUCGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGU UA----UG-C C-GCGAA--U ACUCUU(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( CUAG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCA 1801 UAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCC---AAu ac-------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ---uua---- )--gu-UU|G GAACUCUAAA CAUACUGCCG GU(GUUAA-- 2041 -)-------- ---------- ------GUCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC UACACACAUG CUACAAUGGA --CAGGACAA AGGAUU---- 2161 GUAAGUCC(- ---------- ---------- ---------G CGA)GGUU-U AGAUAACUCC 2221 AA-AAACCUG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUA- -GUU------ 2341 ---------- ----CUCGGG CCUUGUACAC ACCGCCCGUC ACACUAAAAG AGCUGGCUUU 2401 GUCCUAAGUC AUUUUUACCU U-AACC-(-- -acaaa---- --)-GG-AGG GGGAUGCCA- 2461 AAGG-CAGGG CUAGUGAUUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.C.rein 2540 bp RNA RNA ~?~???? DEFINITION chloroplast,Chlamydomonas reinhardii. ACCESSION J01395 KEYWORDS No information. SOURCE chloroplast,Chlamydomonas reinhardii. ORGANISM chloroplast,Chlamydomonas reinhardii. REFERENCE 1 (bases 1 to 1464) AUTHORS No information JOURNAL Dron,Rahire,Rochaix NAR 10:7609(1982) STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2540) Corresponding GenBank entry: J01395 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 382 a 334 c 451 g 307 t 1066 others ORIGIN 1 |--------- ----AUCCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAC GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGA G--------- ------caaa (gcaa----- 121 )uuug----- ---------- ---|uguAGU --GGCGAACG GGUGCGUAA- CGCGUAAGA- 181 ACCUAC-CUA U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------CGGA ---------G GGGGAUAACA 301 U--------- ---------- ------UGG( GAAA)CUG-U UGCUAAUACC CCAUAC---- 361 ---------- ---------- ---AGCU--- ----(GAGG- --)------- AGUGAAA--- 421 ---------- ---------- ggu------- (-----GAAA a)-----|-- -accGCCGAU 481 AGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(GgUAAC GG)CCUCCCA 541 A|GGCCACGA GCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUUCG-CAAU 661 -GGGC-(-GC AA)-GC---G A-CGGA|GCA AUGCCGCGUG CAGGAAGAAG GCC(---UGU 721 G--)GG-UC- --GUAAACUG C|UUUU-CUC AGAGAAGAAG U--------( -------)-- 781 ------UCUG ACGGU-AUCU GAGGAA-UAA GCACCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GGU-GCAAG CGUUGUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUCGU AAAG---|UC U-AAUGUCAA AUACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU GG-------- AC---CGGCA UU-GGAGUAC UCAC-GA--G -CUUGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCAU G-UGGAGCG( GUGAAA)UGC GUAGAGAUAU 1141 GGAGGAACAC CAGU---GGC (GAAG)GCGC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCUGGGGGAG CGAAUAGG(A UU-AGAU-AC )CCUAGUAGU CCCA-GCCGU 1321 AAACUAUGGA G----ACUA| AGUG-CUGC- ---------- ---------- (-cgcaa--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --GCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUCU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGG-ACC-GC 1561 A--------C AAGCGGUGGA UUAUGUGGAU UAAUUCG(AU ACAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-U C-AAGAA--C CUCUCA(GAA -A-)UGGGA- GGG---UGCC 1681 ---------( CUAA-)---- -----cGGA- ---------- -----|CUUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CU(GUGA)AG UGUAUAG(-U UAAGU)CUCA 1801 UAAC-GAGCG CAACCCUCG| UCUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuu---- )-------|G GUUCUCUAAA GAGACUGCCA GU(G-UAA-- 2041 -)-------- ---------- ------GCUG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CAUCCUGGGC UUCACACGUA AUACAAUGGU --UGGGACAA UCAGAA---- 2161 GCGA-CUC(- ---------- ---------- ---------G UGA)GAGC-U AGCGGCUCUG 2221 UU-AAACCCA ACCUCAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CAG(UC--AG CuAU)AUGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG UCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUUCU 2401 GCUCCAAGUC GUU---ACCC U-AACC-(-- --uucg---- --)-GG-AGG GGGGCGCCU- 2461 AAAG-CAGGG CUAGUGACUA GGGUGAAGUC GUAACAAGGU AGGGCUACU( GGAA)GGUGG 2521 CCCUGGCUCA CCUCCUUC-| // LOCUS chl.Chlamy 2540 bp RNA RNA 09-JAN-1995 DEFINITION Chlamydomonas reinhardtii 1683. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas reinhardtii 1683. ORGANISM Chlamydomonas reinhardtii 1683. REFERENCE 1 (bases 1 to 1464) AUTHORS Dawne Vernon JOURNAL No information STANDARD No information BASE COUNT 383 a 335 c 451 g 309 t 1062 others ORIGIN 1 |--------- ----AUCCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAC GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGA G--------- ------caaa (gcaa----- 121 )uuug----- ---------- ---|uguAGU --GGCGAACG GGUGCGUAA- CGCGUAAGA- 181 ACCUAC-CUA U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------CGGA ---------G GGGGAUAACA 301 G--------- ---------- ------UGG( GAAA)CUG-U UGCUAAUACC CCAUAC---- 361 ---------- ---------- ---AGCU--- ----(gagg- --)------- AGUGAAA--- 421 ---------- ---------- ggu------- (-----gaaa a)-----|-- -accGCCGAU 481 AGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(GGUAAC GG)CCUACCA 541 A|GGCCACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUUCG-CAAU 661 -GGGC-(-GC AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG CAGGAAGAAG GCC(---UGU 721 G--)GG-UC- --GUAAACUG C|UUUU-CUC AGAGAAGaag uuc------( -------)-- 781 --------ug aCGGU-AUCU GAGGAA-UAA GCACCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GGU-GCAAG CGUUGUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUCGU AAAG---|UC U-AAUGUCAA AUACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU GG-------- AC---CGGCA UU-GGAgUAC UCAC-GA--G -CUUGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCAU G-UGGAGCG( GUGAAA)UGC GUAGAGAUAU 1141 GGAGGAACAC CAGU---GGC (GAAG)GCGC UCUG-CUGGG CCG--a---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCUGGGGGAG CGAAUAGG(A UU-AGAU-AC )CCUAGUAGU CCCA-GCCGU 1321 AAACUAUGGA G----ACUA| AGUG-CUGC- ---------- ---------- (-cgcaa--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --GCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUCU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGACCCGC 1561 A--------C AAGCGGUGGA UUAUGUGGAU UAAUUCG(AU ACAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-U C-AAGAA--C CUCUCA(GAA -A-)UGGGA- GGG---UGCC 1681 ---------( cuaa-)---- -----cGGA- ---------- -----|CUUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CU(GUGA)AG UGUAUAG(-U UAAGU)CUCA 1801 UAAC-GAGCG CAACCCUCG| UCUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuu---- )-------|G GUUCUCUAAA GAGACUGCCA GU(G-UAA-- 2041 -)-------- ---------- ------GCUG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA CAUCCUGGGC UUCACACGUA AUACAAUGGU --UGGGACAA UCAGAA---- 2161 GCGA-CUC(- ---------- ---------- ---------G UGA)GAGC-U AGCGGCUCUG 2221 UU-AAACCCA ACCUCAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CAG(UC--AG CUAU)AUGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG UCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUUCU 2401 GCUCCAAGUC GUU---ACCC U-AACC-(-- --uucg---- --)-GG-AGG GGGGCGCCU- 2461 AAAG-CAGGG CUAGUGACUA GGGUGAAGUC GUAACAAGGU AGGGCUACU( GGAA)GGUGG 2521 CCCUGGCUCA CCUCCUUC-| // LOCUS chl.E.huxl 2540 bp RNA RNA ~?~???? DEFINITION Emiliania huxleyi. ACCESSION X82156 KEYWORDS No information. SOURCE Emiliania huxleyi. ORGANISM Emiliania huxleyi. REFERENCE 1 (bases 1 to 1464) AUTHORS Linda Medlin JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X82156 LOCUS E.huxley 1495 BP DEFINITION emiliania huxleyi 16s plastid ORIGIN Linda Medlin Sep. 29, 1995 BASE COUNT 395 a 319 c 431 g 338 t 1057 others ORIGIN 1 |--------- -----CAAGC UUAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA GA-------- -------guu (uuu------ 121 )aac------ ---------- ---|UCUAGU --GGCGAACG GGUGAGUAA- UACGUGAGA- 181 AUCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G AAGAAUAACU 301 A--------- ---------- ------CUG( GAAA)CGG-U AGCUAAGUCU UCAUAU---- 361 ---------- ---------- ----GCC--- ----(gaga- --)------- GGUGAAAU-- 421 ---------- ---------- AGU------- (------UUC A)-----|-- -ACUGCCUAA 481 GGA-UGA-|G -CUCACGC|- CUGAUUA-GC UU-GUUGGUG A-G(G-UAAC GG)CUUACCA 541 A|GGCCACGA UCAGUAGCUG |GUUU(GAGA )GAACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U C-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG GAU(---UUU 721 G--)GU-CU- --GUAAACCU C|UUUU-CUC AAGAAAGAAG UUC------( -------)-- 781 --------UG ACGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUCAUUGGG CGUAAAGCGC 901 CUGUAGGUU- ---|GUUUAG UAAG---|UC U-GUUGUUAA AGACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GA---AAGCA AU-GGA-AAC UACU-AG--A -CUUGAG-UA 1081 UGGCA----- GGGGUAGAG| GGAAUUUCUA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUA 1141 GAAAGAACAC CGGC---GGC (GAAA)GCGC UCUA-CUGGA CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUCA 1261 G-AGGCGAAA GCUAGGGGAG CAAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGCG C--------- ---------- (-aauuu--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- GUGCA-GUAU C-UUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GGG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UA-C U-ACAAA--U CUUUUC(GAA -AC)GA-AA- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|UGUA GAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCA| UUUUUA-G-U UGCC-AAU-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuauu--- )------G|G GAUUUCUAGA GAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGCCCUGGGC CACACACGUG CUACAAUGGC --GAAGACAA AGAGUC---- 2161 GCAAACCU(- ---------- ---------- ---------G CGA)AGGC-U AGCUAAUCUC 2221 GU-AAACUUC GUCUAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUGCAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGUCAU 2401 ACCCAAUAUC GUU---aGCC U-AACC-(-- -auucg---- --)-GG-AGG GCGGCGCUU- 2461 AAGG-UAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.S.pseu 2540 bp RNA RNA ~?~???? DEFINITION Skeletonema pseudocostatum. ACCESSION X82155 KEYWORDS No information. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum. REFERENCE 1 (bases 1 to 1464) AUTHORS Linda Medlin JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X82155 LOCUS skelpseu 1486BP (?1495 BP) DEFINITION skelpseudocostatum skel 76 cpDNA ORIGIN Linda Medlin Sep. 29, 1995 BASE COUNT 417 a 298 c 414 g 356 t 1055 others ORIGIN 1 |--------- ----nnnnnU UUAAAG-UU( U-GA)UCMU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- AACACAUGCA AGUCGUACGG GA-------- -------guu (uuu------ 121 )aac------ ---------- ---|UCUAGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUUUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGAUAACA 301 A--------- ---------- ------UUG( GAAA)CAA-A UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----GCU--- ----(uucg- --)------- AGUGAAAu-- 421 ---------- ---------- ggau------ (--uuauauu u)-----|-- auccgCCUAG 481 AGA-GAA-|G -CUCGCGG|- CUGAUUA-GC UU-GUUGGUA A-G(G-UAAG AG)CUUACCA 541 A|GGCGACGA UCAGUAUCUG |GUUU(GAGA )GGACGAUCA GA|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAAGACU GCC(---UAU 721 G--)GG-UU- --GUAAACCU C|UUUU-UUC AGGGAGGaa- ---------( -------)-- 781 ----ucaaug aCguguACCU GAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)GACGGAG |GAU-GCAAG UGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAA UAAG---|UC A-ACUGUUAA AUCUUGAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACUUC AA-------- AA---UCGCA GU-CGA-AAC UAUU-AG--A -CUAGAG-UA 1081 UAGUA----- GAGGUAAAG| GGAAUUUCCA G-UGGAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GAAAGAACAC CGAU---GGC (GAAA)GCAC UUUA-CUGGG CUA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUAACACUCA 1261 G-AGACGAAA GCUAGGGUAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACAAUGGA U----ACUA| GAUG-UUGAA CAG------- ---------- (-aucgac-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|CU GUGCA-GUAU C-AAAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-A U-ACGAA--U UUCUUU(GAA -A-)GAAGA- AAG---UGCC 1681 ---------( GUUU-)---- -----GGAA- ---------- -----|CGUA UACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuuau-- )-------|G GAACUCUAAA AAGACUGCCG GU(UAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC UACACACGUG CUACAUUGGG --CGAGACAA UGAGAU---- 2161 GCAAAUCU(- ---------- ---------- ---------G UGA)AGAC-U AGCUAAUCU- 2221 AU-AAACUCG UUCUAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUUAU 2401 ACCCGAAGUC AUU---ACUC U-AACC-(-- --auuu---- --)-GG-GGG AGGGUGCCU- 2461 AAGG-UAGAA UUAGUGACUG GGGUGAAGUC GUAACAAGGU AACCGUACU( GGAA)GGUGC 2521 GGUUGGAUCA CCUCCUUU-| // LOCUS chl.G.witt 2540 bp RNA RNA ~?~???? DEFINITION Gloeochaete wittrockiana. ACCESSION X82495 KEYWORDS No information. SOURCE Gloeochaete wittrockiana. ORGANISM Gloeochaete wittrockiana. REFERENCE 1 (bases 1 to 146271) AUTHORS No information JOURNAL Gloeochaete wittrockiana plastid 16S rRNA, SAG B 46.84,??X81901??, STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X82495 LOCUS GW16SRRNA 1527 bp DNA PLN 23-FEB-1995 DEFINITION G.wittrockiana plastid 16S rRNA gene. ACCESSION X82495 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Gloeochaete wittrockiana. ORGANISM Gloeochaete wittrockiana Eukaryota; Plantae; Thallobionta; Cryptophyta; Cryptophyceae; Cryptomonadales; Glaucocystophyta; Glaucocystophyceae; Gloeochaetales; Gloeochaetaceae. REFERENCE 1 (bases 1 to 1527) AUTHORS Bhattacharya,D. TITLE Direct Submission JOURNAL Submitted (03-NOV-1994) to the EMBL/GenBank/DDBJ databases. D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG REFERENCE 2 (bases 1 to 1527) AUTHORS Helmchen,T., Bhattacharya,D. and Melkonian,M. TITLE Analyses of ribosomal RNA sequences from Glaucocystophyte cyanelles provide new insights into the evolutionary relationships of plastids JOURNAL Unpublished COMMENT NCBI gi: 683568 FEATURES Location/Qualifiers source 1..1527 /organism="Gloeochaete wittrockiana" /sub_species="Lagerheim" /strain="SAG B 46.84" /note="plastid" primer_bind 1..30 rRNA <31..>1496 /gene="16S rRNA" /note="PCR amplified plastid DNA" /product="16S small subunit ribosomal RNA" primer_bind 1497..1527 BASE COUNT 417 a 305 c 445 g 353 t 7 others ORIGIN BASE COUNT 416 a 303 c 442 g 351 t 1028 others ORIGIN 1 |--------- ---GUGCUGC AGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA AA-------- -------auu (gaaa----- 121 )aau------ ---------- ---|UUUAGU --GGCGAACG GGUGAGUAA- CGCGUGAGA- 181 AUCUGC-CUC A--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GAGGAUAACA 301 G-uaggaaug caaguuccuu gu----GUC( GAAA)GAU-C UGCUAAUACU CCGUAU---- 361 ---------- ---------- ----GCC--- ----(GAAA- --)------- GGUGAAA--- 421 ---------- ---------- GGAuuga--- (------uuu -)---uc|-a aUCUGCCUAG 481 AGA-AGA-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAU GG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 UACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG GCC(---UUU 721 G--)GG-UU- --GUAAACCU C|UUUU-CUC AAGGAAGAAA U--------( -------)-- 781 -----aaaUG AcGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG CGUAAAGGGU 901 UCGUAGGUG- ---|GUUUAA CAAG---|UC U-GUUGUUAA AGGCUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCUU AG-------- AA---AAGCA AU-GGA-AAC UGUU-AG--A -CUAGAG-UA 1081 UGGUA----- GGGGCAAAG| GGAAUUCUCA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GGAAGAACAC CAAA---AGC (GAAA)GCAC UUUG-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-GAACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-UUGUA CG-------- ---------- (uauugacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUACA-GUAC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCG-UGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-U C-GCGAA--U UUUCUU(GAA -A-)AAGAA- AAG---UGCC 1681 ---------( uucg-)---- -----GGAG- ---------- -----|CGCG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U UGCC-auca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuaagu-- )-----ug|G GCACUCUAAA GAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUA AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UAUCCUGGGC UACACACGUG CUACAAUGGU --UAAGACAA UAGGUU---- 2161 GCAAGCUU(- ---------- ---------- ---------G UAA)AAGU-A AGCUAAUCCU 2221 UU-AAACUUA AUCUCAGUUC AGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGUCGGCCAU 2401 GCCC-AAGUC GUU---ACCU U-AACC-(-- -uauuu---- --)-GG-AGG GGGAUGCCG- 2461 AAnn-nnnnn UCGGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGU 2521 GGUUGGAUCA CCUCCUUG-| // LOCUS chl.G.nost 2540 bp RNA RNA ~?~???? DEFINITION Glaucocystis nostochinearum. ACCESSION X82496 KEYWORDS No information. SOURCE Glaucocystis nostochinearum. ORGANISM Glaucocystis nostochinearum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X82496 LOCUS Gnos16S_ 1527 BP DEFINITION Glaucocystis nostochinearum plastid 16S rRNA, SAG 45.88, X82496, eleased, Bha ORIGIN BASE COUNT 394 a 326 c 466 g 326 t 1028 others ORIGIN 1 |--------- ---GUGCUGC AGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGG AG-------- -------auc (gaaa----- 121 )gau------ ---------- ---|CUUAGU --GGCGGACG GGUGAGUAA- CGCGUGAGA- 181 ANCUGC-CUC U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGACAACA 301 G-gaagagaa caauaggacu cuuuucGCC( GAAA)GGU-C UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----GCC--- ----(GUAA- --)------- GGUGAAA--- 421 ---------- ---------- GGAuu----- (------ucu -)-----|-a aUCUGCCUGG 481 AGA-AGA-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAC GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGACCA GC|CACACUG GGA(CUGAGA 601 UACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAAGAAG GCC(---UGU 721 G--)GG-UU- --GUAAACCU C|UUUU-CUC AGGGAAGAAG A--------( -------)-- 781 ------uaUG AcGGU-ACCU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG CGUAAAGAGU 901 UCGUAGGUG- ---|GUUUAA UAAG---|UC U-GUUGUUAA AGAUUGGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCC AA-------- AC---AGGCA AU-GGA-AAC UGUU-AG--G -CUUGAG-UA 1081 CGGUA----- GGGGUAGAG| GGAAUUCCCG G-UGUAGCG( GUGAAA)UGC GUAGAUAUCG 1141 GGAAGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-GAACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACGAUGGA U----ACUA| GGUG-UUGUA CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUACA-GUAC U-GUACG--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGAUUUGA CA----UG-U C-GCGAA--U UUUCUU(GAA -A-)AAGAA- AAG---UGCC 1681 ---------( uucg-)---- -----GGAG- ---------- -----|CGCG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U UGCC-agca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uucagu-- )-----ug|G GUACUCUAAA GAAACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGGA GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UAUCCUGGGC UACACACGUG CUACAAUGGC --CGGGACAA AAGGUC---- 2161 GCGAACUU(- ---------- ---------- ---------G UGA)AAGU-A AGCCAAUCCU 2221 AU-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGUUGGCCAC 2401 GCC-GAAGUC GUU---ACCC U-AACU-(-- -uuuuu---- --)-AG-AGG GGGACGCCG- 2461 nnnn-nnGGG CUGGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGU 2521 GGUUGGAUCA CCUCCUUG-| // LOCUS chl.G.vacu 2540 bp RNA RNA ~?~???? DEFINITION Glaucosphaera vacuolata. ACCESSION X81903 KEYWORDS No information. SOURCE Glaucosphaera vacuolata. ORGANISM Glaucosphaera vacuolata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X81903 LOCUS PGV16RNA 1507 bp DNA PLN 23-FEB-1995 DEFINITION G.vacuolata 16S rRNA gene (plastid encoded). ACCESSION X81903 KEYWORDS 16S rRNA; plastid 16S small subunit ribosomal RNA. SOURCE Glaucosphaera vacuolata. ORGANISM Glaucosphaera vacuolata Eukaryota; Plantae; Thallobionta; Cryptophyta; Cryptophyceae; Cryptomonadales; Glaucocystophyta; Glaucocystophyceae; Gloeochaetales; Glaucosphaeraceae. REFERENCE 1 (bases 1 to 1507) AUTHORS Bhattacharya,D. TITLE Direct Submission JOURNAL Submitted (26-SEP-1994) to the EMBL/GenBank/DDBJ databases. D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG REFERENCE 2 (bases 1 to 1507) AUTHORS Helmchen,T., Bhattacharya,D. and Melkonian,M. TITLE Analysis of ribosomal RNA sequences from Glaucocystophyte Cyanelles provide new insights into the evolutionary relationships of plastids JOURNAL Unpublished COMMENT NCBI gi: 683659 FEATURES Location/Qualifiers source 1..1507 /organism="Glaucosphaera vacuolata" /strain="SAG B 13.82" /note="plastid DNA" primer_bind 1..30 rRNA 31..1476 /product="plastid-encoded 16S small subunit ribosomal RNA" primer_bind 1477..1507 BASE COUNT 428 a 300 c 422 g 356 t 1 others ORIGIN BASE COUNT 427 a 298 c 419 g 354 t 1042 others ORIGIN 1 |--------- ---GUGCUGC AGAGAG-UU( UCGA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGUACGG AA-------- -------guu (gucaa---- 121 )aac------ ---------- ---|UUUAGU --GGCGGACG GGUGAGAAC- AACAUAAGA- 181 AUCUGC-UUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------A GAGGAUAACA 301 A--------- ---------- ------UCG( GAAA)CGA-U UGCUAAUACU CUAUGU---- 361 ---------- ---------- ----GCU--- ----(GUAA- --)------- AGUGAAA--- 421 ---------- ---------- GGA------- (-----gcaa -)-----|-- -UCCGCCUGA 481 AAU-AGA-|G -CUUGUGU|C CUGAUUA-GC UA-GUUGGUA G-G(G-UAAG AG)CCUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAAGAAG GUC(---UCU 721 G--)GA-UU- --GUAAACCU C|UUUU-GUU GGGAAAGAAU UU-------( -------)-- 781 --------UG AcGGU-ACCC AACGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUCAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUUU UAAG---|UC U-AUUGUUAA AUAUUAAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCUU GA-------- UU---CAGCA UU-GGA-AAC UGUU-AA--A -CUAGAG-UA 1081 UGGUA----- AAGGUAGAA| GGAAUUUCCA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GGAAGAACAC CAGU---GGC (GAAA)GCGU UCUA-CUAGA CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCUAAGGUAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CUUA-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGUG CA-------- ---------c (uauuaagu) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-U GUAUA-GUAU C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAAAAUUUGA CA----UA-U C-GUGAAUUU UUAGUU(GAA -A-)GAUGA- GAAg--UGCC 1681 ---------( uuag-)---- -----GGAA- ---------- -----|CACG AAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG UAACCCUUG| UCUUUA-G-U UGCC-auca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuagu-- )-----ug|G GAACUCUAAA GAGACUGCUG GU(GACAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUA AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CAUUUUGGGC UACACACGUG CUACAAUGGU --UGGGACAA AGAGCU---- 2161 GCAAACCU(- ---------- ---------- ---------G CGA)AGGU-U AGCGAAUCUC 2221 GU-AAACCUA GCCUAAGUUC AGAUCGUAGG C(UGCAACUC )GCCUACGUG AAGAUGGAAU 2281 CGCU------ AGUAAU-CGC CGA(UC--AG CUAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACNAUGGA AGUCAACUAC 2401 GCCCAAAGGU UAU---UUUC UUAACC-(-- --guaa---- --)--G-AGA GAGGUACCU- 2461 AAGG-CAGAG UUGGUAACUA GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGU 2521 GGCUGGAUCA CCUCCUUG-| // LOCUS cryptmonad 2540 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified cryptomonad.; . ACCESSION U70724 KEYWORDS . SOURCE Unidentified cryptomonad. ORGANISM Unidentified cryptomonad. REFERENCE 1 (bases 1 to 1482) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE North Carolina Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1482) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U70724 BASE COUNT 395 a 321 c 437 g 329 t 1058 others ORIGIN 1 |--------- ---~~~~~~~ ~~AGAG-UU( U-GA)UCAU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGUACGA GA-------- -------auu (uuu------ 121 )aau------ ---------- ---|UCUAGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G AAGGAUAACA 301 G--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACU UCAUAU---- 361 ---------- ---------- ----GCC--- ----(GCAA- --)------- GGUGAAA--- 421 ---------- ---------- GAA------- (-----ugua -)-----|-- -UUCGCCUAA 481 GGA-GGA-|G -CUCGCGU-- CUGAUUA-GC UA-GUUGGAG A-G(G-UAAU GG)CUCACCA 541 A|GGCGACGA UCAGUAGCUG |GUUU(GAGA )GGACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAUGACA GCC(---UGU 721 G--)GG-UU- --GUAAACCU C|UUUU-CUC AAGGAAGAA- ---------( --guuc-)-- 781 --------UG ACGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUCACUGGG CAUAAAGCGU 901 CUGUAGGUG- ---|GUUCGG UAAG---|UC U-GCUGUUAA AGACUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -CUA)ACCCU AG-------- AA---AAGCA GU-GGA-AAC UGCC-AA--A -CUUGAG-UG 1081 UGGUA----- GAGGUAGAG| GGAAUUCCUA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUA 1141 GGAAGAACAC CAAU---GGC (GAAG)GCAC UCUA-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGACA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGCA CG-------- ---------- (uauuaacc) 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- -------|-C GUGCA-GUAU C-GUAGC--- --(UAAG)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-U C-ACGGA--U CUUUUU(GAA -A-)GGAAA- GAG---UGCC 1681 ---------( uucg-)---- -----GGAA- ---------- -----|CGUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG UAACCCUUG| UUUUUA-G-U UGCC-auca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuagu-- )-----ug|G GCACUUUAAA AAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGACGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC UACACACGUA CUACAAUGGU --CGAGACAA AGAGCU---- 2161 GCUAGCCU(- ---------- ---------- ---------G CGA)AGGU-A CGCUAAUCUC 2221 AU-AAACUCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUAGCCAU 2401 ACCCAAAGUC GUU---ACCU U-AACC-(-- --uuuu---- --)-GG-AGG GGGGCGCCU- 2461 AAGG-UAAGG UUAGUGACUG GGGUGAAGUC CUAACAAGGU AGCCCUACU( GGAA)GGUGU 2521 GGUUGGAUCA CCUCCUU--| // LOCUS chl.uniden 2540 bp RNA RNA 05-OCT-1995 DEFINITION Chloroplast Unidentified eukaryote clone OM20.; . ACCESSION U32670 KEYWORDS . SOURCE Chloroplast Unidentified eukaryote clone OM20. ORGANISM Chloroplast Unidentified eukaryote clone OM20. REFERENCE 1 (bases 1 to 1474) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE library from Atlantic Ocean seawater Chromophyte plastid 16S ribosomal RNA genes found in a clone JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 (bases 1 to 1474) AUTHORS Rappe,M.S. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) Michael S. Rappe, Microbiology Department, Oregon State University, 222 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U32670 NCBI gi: 1002747 BASE COUNT 400 a 301 c 421 g 352 t 1066 others ORIGIN 1 |--------- ---nnnnnnn nnCGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- AAUACAUGCA AGUCGUACGA AA-------- -------guu (uuu------ 121 )aac------ ---------- ---|UUUAGU --GGCGGACG GGUGAGUAA- CGCGUGAGA- 181 AUUUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGAUAACA 301 G--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----GCU--- ----(UUCG- --)------- AGUGAAAU-- 421 ---------- ---------- AGA------- (-----uuua -)-----|-- -UCUGCCUGA 481 AGA-GAA-|G -CUCGCGU|- CUGAUUA-GC UU-GUUGGUG G-G(G-UAAA GG)CCUACCA 541 A|GGCGACGA UCAGUAUCUG |GUUU(GAGA )GGAUGAUCA GA|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UAGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAAGACU GCC(---UAU 721 G--)GG-UU- --GUAAACCU C|UUUU-UUC AGGGAGGAAU UU-------( -------)-- 781 --------UG AcGUGuACCU GAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)GACGGAG |GAU-GCAAG UGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUAAA CAAG---|UC A-ACUGUUAA AUCUUGAAGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACUUC AA-------- AA---UCGCA GA-CGA-AAC UGUU-UG--A -CUAGAG-UA 1081 UAGUA----- GGGGUAAAG| GGAAUUUCCA G-UGGAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GAAAGAACAC CGAU---GGC (GAAG)GCAC UUUA-CUGGG CUA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUCA 1261 G-AGACGAAA GCUAGGGUAG CACAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACAAUGGA U----ACUA| GAUG-UUGUU CAg------- ---------- (-aucgac-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|CU GUGCA-GUAU C-AAAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGGC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-A U-ACGAA--U UUUUAU(GAA -A-)GUAAA- AAG---UGCC 1681 ---------( guuu-)---- -----GGAA- ---------- -----|CGUA UACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U GAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUA| UUUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuu---- )-------|G GAACUCUAGA AAGACUGCCG GU(UAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGCG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC UACACACGUG CUACAUUGGG --CGAGACAA UGAGAU---- 2161 GCUAGUCU(- ---------- ---------- ---------G CGA)AGAU-A AGCUAAUCU- 2221 AU-AAACUCG UUCUAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUUAU 2401 GCCCGAAGUC GUU---ACUC U-AACC-(-- --uuuu---- --)-GG-AGG AGGGCGCCU- 2461 AAGG-UAGAA UUAGUGACUG GGGUGAAGUC GUAACAAGGU AACCGUACU( GGAA)GGUGC 2521 GGUUGGAUCA CCUCCUU--| // LOCUS chl.uniden 2540 bp RNA RNA 05-OCT-1995 DEFINITION Chloroplast Unidentified eukaryote clone OM21.; . ACCESSION U32671 KEYWORDS . SOURCE Chloroplast Unidentified eukaryote clone OM21. ORGANISM Chloroplast Unidentified eukaryote clone OM21. REFERENCE 1 (bases 1 to 1473) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 (bases 1 to 1473) AUTHORS Rappe,M.S. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) Michael S. Rappe, Microbiology Department, Oregon State University, 222 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U32671 NCBI gi: 1002748 BASE COUNT 400 a 309 c 420 g 344 t 1067 others ORIGIN 1 |--------- ---nnnnnnn nnAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA AA-------- -------guu (uuu------ 121 )aac------ ---------- ---|UUUAGU --GGCGAACG GGUGCGUAA- UACGUGAGA- 181 AUCUUC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GAGUAUAACU 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAACACU CCAUAU---- 361 ---------- ---------- ----GUC--- ----(GAGA- --)------- GAUGAAAU-- 421 ---------- ---------- AAU------- (-------uu -)-------- -AUUGCCUAA 481 GGA-UGA-|G -CUCGCGC|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU GG)CUCACCA 541 A|GGCCACGA UCAGUAGCUG |GUUU(GAGA )GAACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U C-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG GAU(---UUU 721 G--)GU-CU- --GUAAACCU C|UUUU-CUC AAGAAAGAAG UUc------( -------)-- 781 --------UG AcGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUCAUUGGG CGUAAAGCGC 901 CUGUAGGUU- ---|GUUUAC UAAG---|UC U-GUUGUUAA AGACUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU AG-------- AA---AAGCA AU-GGA-AAC UAAU-AG--A -CUAGAG-UA 1081 UGGCA----- GGGGUAGAG| GGAAUUUCUA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUA 1141 GAAAGAACAC CGGU---GGC (GAAA)GCGC UCUA-CUGGA CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUCA 1261 G-AGGCGAAA GCUAGGGUAG CAAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGUG C--------- ---------- (-auuaa--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- GUACA-GUGU C-CUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GGG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UA-C U-ACGAA--U UCUUUU(GAA -A-)AAGAG- AAG---UGCC 1681 ---------( uucg-)---- -----GGAA- ---------- -----|UGUA GAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUA| UUUUUA-G-U UACC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( aauucguug- )-------|G GUUCUUUAGA AAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGUCCUGGGC UACACACGUG CUACAAUGGU --UAAGACAA AGAGUC---- 2161 GCGAGCUU(- ---------- ---------- ---------G UAA)AAGU-C AGCUAAUCU- 2221 CGUAAACUUA GCCUAAGUUC AGAUUGUAGG C(UGCAACUC )GCCUGCAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CCAU)ACAGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGUCAU 2401 ACCCGAAACC GUU---AGUU U-AACC-(-- --guuu---- --)-GG-AGA ACGACGUCU- 2461 AAGG-UAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUU--| // LOCUS chl.Chl.re 2540 bp RNA RNA ~?~???? DEFINITION Chlorarachnion reptans. ACCESSION U21490 KEYWORDS No information. SOURCE Chlorarachnion reptans. ORGANISM Chlorarachnion reptans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U21490 LOCUS CRU21490 1436 bp rRNA PLN 16-MAR-1995 DEFINITION Chlorarachnion reptans chloroplast 16S small subunit rRNA gene. ACCESSION U21490 KEYWORDS . SOURCE Chlorarachnion reptans. ORGANISM Chloroplast Chlorarachnion reptans Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 1436) AUTHORS McFadden,G.I., Gilson,P.R. and Waller,R.F. TITLE Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences JOURNAL Arch. Protistenkunde 154 (1995) In press REFERENCE 2 (bases 1 to 1436) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (22-FEB-1995) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia COMMENT NCBI gi: 710413 FEATURES Location/Qualifiers source 1..1436 /clone="pF69" /strain="CCMP 238" /organism="Chlorarachnion reptans" /chloroplast rRNA 1..1436 /product="16S small subunit rRNA" BASE COUNT 421 a 287 c 384 g 342 t 2 others ORIGIN BASE COUNT 421 a 287 c 384 g 342 t 1106 others ORIGIN 1 |--------- ---nnnnGGA UCCGAGUUU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCU-- GACACAUGCA AGUCGAACGA AA-------- -------aga (uuuaa---- 121 )ucu------ ---------- ---|UUUAGU --GGCGCACG GGUGAGUAA- CGCGUAAGA- 181 AUCUCC-CUC U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGU ---------A AAGGGUAACA 301 A--------- ---------- ------UUG( GAAA)CGG-U UGCUAAUACU UUAUAU---- 361 ---------- ---------- ----GCU--- ----(GAGA- --)------- AGUGAAAU-- 421 ---------- ---------- GAUgugua-- (-----gcag -)----uacg cAUUGCCUAG 481 UGA-UGA-|G -CUUGCGU|- CUGAUUA-GC CU-GUUGGUA A-G(A-UAAU AG)CUUACCA 541 A|AGCUAUAA UCAGUAGCUG |GUCU(GAGA )GGAUGAACA GC|CACACCG GAA(CUUAGA 601 CACG)GUCCG GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG GAGGAUGAAA GCC(---UAU 721 G--)GG-UU- --GUAAACUC C|UUUU-CUU AGAAAAGAAG UUc------( -------)-- 781 --------UG AcGGU-AUCU AAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG UGUAAAGCGU 901 CUGUAGGUU- ---|GCUUAC UUAAG--|UC A-GUUGUUAA AUUUCAGAAC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)AUUUU GA-------- UA--AAGGCA AC-UGA-AAC UAAU-AA--G -CUAGAG-UC 1081 GAGGA----- GAGGCAGAA| GGAACUCCGA G-UGUAGCG( NUGAAA)UGC GUAGAUAUUC 1141 GGAAGAACAC CGAC---GGC (GAAA)GCAU UCUG-CUGGG CUU--G---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG AGAAUGGG(A UU-AGAU-AC )CCCAGUAUU CCUC-GCCGU 1321 AAACGAUGGA U----AUUA| GGUA-UUAGA U--------- ---------- (-cuuuaua) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- AUUUA-GUAC U-GAAGC--- --(UAAC)GC AU-UAAAUAU 1501 CC|CACCUNG GGAGUAUGCU C(GCAA)GAG UGAAACUUAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGACAUGA CU----AC-A U-CUAUA--C CUCUUU(GAA -A-)GAAGA- GAU------- 1681 ---------( ucua-)---- ---------- ---------- -----|AGGA U-GCC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuu---- )-------|- ---UUCUAGA AAUACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA AGUUCUGGGC UACACACGUG CUACAACGGU --UAAGACAA UGAGAU---- 2161 GCAAAACU(- ---------- ---------- ---------G CAA)AGAU-G AGCCAACCU- 2221 CAGAAACUUA AUCUCAGUUC GAAUUGUAGG C(UGAAACUC )GCCUACAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAC)ACAGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCACGGA AAUUGGCUAC 2401 ACCCAAAGCU AUU---ACCU U-AACC-(-- aaauaca--- --)-GG-AGA GGGGUAUCU- 2461 AAGG-UGGAG UUAAUAACUG GGGUGAAGUC GACnnnnnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.Chlora 2540 bp RNA RNA ~?~???? DEFINITION . ACCESSION U21491 KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS LOCUS CRU21491 1439 bp rRNA PLN 16-MAR-1995 DEFINITION Chlorarachnion sp. CCMP 240 chloroplast 16S small subunit rRNA gene. ACCESSION U21491 KEYWORDS . SOURCE Chlorarachnion sp. CCMP 240. ORGANISM Chloroplast Chlorarachnion sp. Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 1439) AUTHORS McFadden,G.I., Gilson,P.R. and Waller,R.F. TITLE Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences JOURNAL Arch. Protistenkunde 154 (1995) In press REFERENCE 2 (bases 1 to 1439) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (22-FEB-1995) Geoffrey I McFadden, School of Botany, University of Melbourne, Parkville, VIC, 3052, Australia COMMENT NCBI gi: 710414 FEATURES Location/Qualifiers source 1..1439 /clone="pF70" /strain="CCMP 240" /organism="Chlorarachnion sp." /chloroplast rRNA 1..1439 /product="16S small subunit rRNA" BASE COUNT 422 a 283 c 379 g 355 t ORIGIN BASE COUNT 422 a 283 c 379 g 355 t 1101 others ORIGIN 1 |--------- ---nnnnGGA UCCGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- GACACAUGCA AGUCGAACGA AA-------- -------aga (uuuuu---- 121 )ucu------ ---------- ---|UUUAGU --GGCGCACG GGUGAGUAA- CGCGUAAGA- 181 AUUUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGU ---------A GAGAAUAACA 301 A--------- ---------- ------UUG( GAAA)CGG-U UGCUAAUACU CUAUAU---- 361 ---------- ---------- ----GCU--- ----(GGGA- --)------- AGUGAAAU-- 421 ---------- ---------- AAUgugug-- (---uaacua u)----uaca cUUUGCCUAA 481 AGA-GAA-|G -CUUGCGU|- CUGAUUA-GC CU-GUUGGUA A-G(A-UAAU AG)CUUACCA 541 A|AGCUAUUA UCAGUAGCUG |GUCU(GAGA )GGACAAACA GC|CACACCG GAA(CUUAGA 601 UACG)GUCCG GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG GAGGAUUAAA GCC(---CAU 721 G--)GG-UU- --GUAAACUC C|UUUU-CUU AGAGGAGAAG GUc------( -------)-- 781 --------UG AcGGU-AUCU AAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG UGUAAAGCGU 901 CUGUAGGUU- ---|GCUUAU UUAAG--|UC A-GUUGUUAA AUAUUAGGAC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)AUCUU GA-------- AA---CAGCA AC-UGA-AAC UAUU-AA--G -CUAGAG-UU 1081 GAGUA----- GAGGCAGAA| GGAACUCCGA G-UGUAGUG( GUGAAA)UGC GUAGAUAUUC 1141 GGAAGAACAC CGAA---GGC (GAAA)GCAU UCUG-CUGGG CUA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG AGAAUGGG(A UU-AGAU-AC )CCCAGUAUU CCUC-GCCGU 1321 AAACGAUGGA U----AUUA| GAUA-UUAGG U-aa------ ---------- (-uagaa--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- ------u|ug AUCUA-GUA- U-CGAAC--- --(UAAC)GC GU-UAAAUAU 1501 CC|CACCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUUAA AGGAAUUGAC GGGG-CCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCUACG)CGA AGAACCUUAC 1621 CAGGACUUGA CU----AC-A U-CUAUA--C CUCUUU(GAA -A-)GAAGA- GAA------- 1681 ---------( ucuua)---- ---------- ---------- -----|AGGA U-GCC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUCUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --aaau---- )-------|- ---UUCUAAG AUUACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA AGUUCUGGGC UACACACGUG CUACAACGGU --UAACACAA UGAGCU---- 2161 GCAAUCUC(- ---------- ---------- ---------G UAA)GAAA-G AGCUAACCU- 2221 CAGAAAUUUA ACCUCAGUUC UAAUUGUAAG C(UGAAACUC )GCUUACAUG AAGCUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUAC- -GUU------ 2341 ---------- ----UCCGGG CCUUGUACAC ACCGCCCGUC ACACCACGGA AAUUAGCUAC 2401 ACCCAAAGCU AUU---UACC UUAACC-(-- -uauau---- --)-GG-AGA GGGGUAUCU- 2461 AAGG-UGGAG UUAAUAACUG GGGUGAAGUC GACnnnnnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.Chlora 2540 bp RNA RNA ~?~???? DEFINITION . ACCESSION U21492 KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS LOCUS CRU21492 1434 bp rRNA PLN 16-MAR-1995 DEFINITION Chlorarachnion sp. CCMP 242 chloroplast 16S small subunit rRNA gene. ACCESSION U21492 KEYWORDS . SOURCE Chlorarachnion sp. CCMP 242. ORGANISM Chloroplast Chlorarachnion sp. Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 1434) AUTHORS McFadden,G.I., Gilson,P.R. and Waller,R.F. TITLE Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences JOURNAL Arch. Protistenkunde 154 (1995) In press REFERENCE 2 (bases 1 to 1434) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (22-FEB-1995) Geoffrey I McFadden, School of Botany, University of Melbourne, Parkville, VIC, 3052, Australia COMMENT NCBI gi: 710415 FEATURES Location/Qualifiers source 1..1434 /clone="pF71" /strain="CCMP 242" /organism="Chlorarachnion sp." /chloroplast rRNA 1..1434 /product="16S small subunit rRNA" BASE COUNT 421 a 283 c 384 g 346 t ORIGIN BASE COUNT 421 a 283 c 384 g 346 t 1106 others ORIGIN 1 |--------- ---nnnnGGA UCCGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- GACACAUGCA AGUCGAACGA GA-------- ------aaac (uuu------ 121 )guuu----- ---------- ---|UCUAGU --GGCGCACG GGUGAGUAA- CGCGUAAGA- 181 AUCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGU ---------A GAGGAUAACA 301 A--------- ---------- ------UUG( GAAA)CGA-U UGCUAAUACU CUAUAA---- 361 ---------- ---------- ----GCU--- ----(GAGA- --)------- AGUGAAAU-- 421 ---------- ---------- GAUauau--- (-----uuau -)-----aua uAUUGCCUAG 481 AGA-UGA-|G -CUUGCGU|- CUGAUUA-GC CU-GUUGGUA G-G(G-UAAA AG)CUUACCA 541 A|AGCUAUAA UCAGUAGCUG |GUCU(GAGA )GGAUAGACA GC|CACACCG GAA(CUUAGA 601 UACG)GUCCG GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG GAGGAUGAAA GCC(---UAU 721 G--)GG-UU- --GUAAACUC C|UUUU-CUU AGAGAAGAAG UUc------( -------)-- 781 --------UG AcGGU-AUCU AAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG UGUAAAGCGU 901 CUGUAGGUU- ---|GCUUAC UUAAG--|UC A-GUUGUUAA AUUUCAGAAC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)AUUUU GA-------- UA--CCAGCA AC-UGA-AAC UAAU-AA--G -CUAGAG-UC 1081 AAGUA----- GAGGUAGAA| GGAACUCCGA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUC 1141 GGAAGAACAC CGAU---GGC (GAAA)GCAU UCUG-CUGGA CUU--G---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG AGAAUGGG(A UU-AGAU-AC )CCCAGUAUU CCUC-GCCGU 1321 AAACGAUGGA U----AUUA| GGUA-UUAGG Ua-------- ---------- (-aaau---) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-U AUUUA-GUAC U-GAAGC--- --(UAAC)GC GU-UAAAUAU 1501 CC|CACCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUUAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGACUCGA CU----AC-A U-CUAUC--G CUCUUU(GAA -A-)GAAGA- GAU------- 1681 ---------( uguua)---- ---------- ---------- -----|AGGA U-GCC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuu---- )-------|- ---CUCUAAA AGUACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA AGUUCUGGGC UACACACGUG CUACAACGAU --UAAGACAA UGAGAU---- 2161 GCAAUACU(- ---------- ---------- ---------G CAA)AGAG-G AGCUAACCU- 2221 CAGAAACUUA AUCUCAGUUC GAAUUGUAGG C(UGAAACUC )GCCUACAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAC)ACAGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCACGGA AAUUGGCUAC 2401 ACCCAAAGCU AUU---ACCU U-AACC-(-- aaauuua--- --)-GG-AGA GGGGUAUCU- 2461 AAGG-UGGAG UUAAUAACUG GGGUGAAGUC GACnnnnnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.K.flac 2540 bp RNA RNA ~?~???? DEFINITION Klebsormidium flaccidum. ACCESSION X75522 KEYWORDS No information. SOURCE Klebsormidium flaccidum. ORGANISM Klebsormidium flaccidum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X75522 LOCUS KFPL16SR 1511 bp DNA PLN 08-JUN-1995 DEFINITION K.flaccidum plastid 16S rRNA gene. ACCESSION X75522 KEYWORDS 16S ribosomal RNA. SOURCE Klebsormidium flaccidum. ORGANISM Klebsormidium flaccidum Eukaryotae; mitochondrial eukaryotes; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Klebsormidiales; Klebsormidiaceae; Klebsormidium. REFERENCE 1 (bases 1 to 1511) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. V. A. R. Huss, Inst fuer Botanik & Pharmazeutische, Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG REFERENCE 2 (bases 1 to 1511) AUTHORS Huss,V.A.R., Straub,S. and Kranz,H.D. JOURNAL Unpublished COMMENT NCBI gi: 861011 FEATURES Location/Qualifiers source 1..1511 /organism="Klebsormidium flaccidum" /strain="SAG 335-2b" /note="plastid" primer_bind 1..30 /note="PCR amplification 5'-primer" rRNA 1..1511 /product="16S small subunit ribosomal RNA" primer_bind complement(1489..1511) /note="PCR amplification 3'-primer" BASE COUNT 357 a 389 c 505 g 257 t 3 others ORIGIN BASE COUNT 357 a 389 c 505 g 257 t 1032 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUAGC 61 GGUUUGCCU- AACACAUGCA AGUUGCACGG CG-------- --ccaugccu (cucg----- 121 )aggaaugg- ---------- ---|CGGAGU --GGCGGACG GGUGAGGAA- CGCGUAAGG- 181 ACCUGC-CCC U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGAUAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----CCU--- ----(GAGG- --)------- AGGGAAA--- 421 ---------- ---------- GGA------- (-----gaga -)-----|-- -UCCGCCCAG 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGGG G-G(G-UAAU GG)CCUCCCA 541 A|GGCAACGA UCAGUUGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUC- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGG|GCA AUGCCGCGUG GAGGAUGAAG GCC(--CAAU 721 G--)GG-UC- --GUAAACUU C|UUUAGAUC AGAGACGAAG Ag-------( -------)-- 781 -------aUG AcGGU-ACCU GAAGAACUAA GCAUCGGCUA AACC-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)GACGGGG |GAU-GCGAG CGUUAUCCGG AAUGAUUGGG CGUAAAGGGU 901 CCGCAGGUG- ---|GCCCGG UCAG---|UC C-GCUGUCAA AACCUGGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AG---AGGCG GC-GGA-GAC CACC-GG--G -CUUGAG-UC 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GGAAGAACGC CAAG---GGC (GAAG)GCAC UCUG-CUAGG CCU--GA--- ---------- 1201 ---------- ---------- ---------- ---------- --uuucgCGA CUGACACUCA 1261 G-GGACGAGA GCCAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUG-GCCGU 1321 AAACGAUGGA U----ACCA| AGCC-CUGCG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GGGCA-GGGC U-GUAGC--- --(UAAC)GC AU-GAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGAGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--C CCCCCU(GAG -A-)GGGGG- GGG---UGCC 1681 ---------( uucg-)---- -----GGAG- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUAA)GA UGUUGGG(-U UCAGU)CCCG 1801 CAAC-GAGCG CAACCCCCG| UCUCUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cacaauuc-- )-------|G GCACCCUAGA GAGACCGCCG GU(GUUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGAGGU C-AAGUCAAC 2101 AUGCCCCUUU UGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGAU---- 2161 GCGACCCC(- ---------- ---------- ---------G CAA)GGCC-A GCCUGACCU- 2221 CGUAAACCCG GCCUCAGUUC GGAUUGUAGG C(UGCAACCC )GCCUACAUG AAGGAGGAAU 2281 CGCU------ AGUAAU-CAC CGG(UC--AG CCAU)ACGGU GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CUUUGCACAC ACCGCCCGUC ACACUAUGGG AAUCGGCCAU 2401 GCCCCAAGUC GUU---ACCC C-AACC-(-- --cgua---- --)-GG-GAG GGGGAUGCC- 2461 AAAGGCAGGG CUGGUGACUA AAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.Isochr 2540 bp RNA RNA ~?~???? DEFINITION Isochrysis sp.. ACCESSION X75518 KEYWORDS No information. SOURCE Isochrysis sp. ORGANISM Isochrysis sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X75518 LOCUS PLPL16SR 1485 bp DNA PLN 08-JUN-1995 DEFINITION Isochrysis sp. plastid 16S rRNA gene. ACCESSION X75518 KEYWORDS 16S ribosomal RNA. SOURCE Isochrysis sp. ORGANISM Isochrysis sp. Eukaryota; Plantae; Thallobionta; Haptophyta; Prymnesiophyceae; Prymnesiophytes; Isochrysis. REFERENCE 1 (bases 1 to 1485) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. V. A. R. Huss, Inst fuer Botanik & Pharmazeutische, Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG REFERENCE 2 (bases 1 to 1485) AUTHORS Huss,V.A.R., Horn,G. and Engel,H. JOURNAL Unpublished COMMENT NCBI gi: 861084 FEATURES Location/Qualifiers source 1..1485 /organism="Isochrysis sp." /strain="SAG 927-2" /note="plastid" primer_bind 1..30 /note="PCR amplification 5'-primer" rRNA 1..1485 /product="16S small subunit ribosomal RNA" primer_bind complement(1463..1485) /note="PCR amplification 3'-primer" BASE COUNT 395 a 310 c 431 g 343 t 6 others ORIGIN BASE COUNT 395 a 310 c 431 g 343 t 1061 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA GA-------- -------guu (uuu------ 121 )aac------ ---------- ---|UCUAGU --GGCGAACG GGUGMGUAA- YACGUGAGA- 181 AUCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------A AAGAAUAACU 301 G--------- ---------- ------CUG( GAAA)CGG-U AGCUAAGUCU UUAUAU---- 361 ---------- ---------- ----GCC--- ----(GAGA- --)------- GGUGAAAU-- 421 ---------- ---------- AGU------- (-----ucau -)-----|-- -ACUGCCUAA 481 GGA-UGA-|G -CUCACGC|- CUGAUUA-GC UU-GUUGGUA A-G(G-UAAU GG)CUUACCA 541 A|GGCCACGA UCAGUAGCUG |GUUU(GAGA )GAACGAMCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U C-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG UAU(---CUU 721 G--)GU-AU- --GUAAACCU C|UUUU-CUC AAGAAAGAAG UUc------( -------)-- 781 --------UG AcGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUUCGG AAUUAUUGGG CGUAAAGCGC 901 CUGUAGGUU- ---|GUUUAG UAAG---|UC C-GUUGUUAA AUACUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GA---AAGCA AU-AGA-AAC UACU-AG--A -CUUGAG-UA 1081 UGGCA----- GGGGUAGAG| GGAAUUUCUA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUA 1141 GAAAGAACAC CGGC---GGC (GAAA)GCGC UCUA-CUGGA CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGGCGAAA GCUAGGGUAG CAAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUA-GCCGU 1321 AAACGGUGGA U----ACUA| GGUG-UUGUG C--------- ---------- (-aaauu--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- GUACA-GUAU C-UUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GGG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UA-C U-GCAGA--U CUUCUA(GAA -A-)CAGAA- GAG---UACC 1681 ---------( uucg-)---- -----GGAA- ---------- -----|UGUA GAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UUUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( aauuuauug- )-------|G GUUUUCUAGA AAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGUCCUGGGC CACACACGUG CUACAAUGGC --GGAGACAA AGAGUC---- 2161 GCAAACCU(- ---------- ---------- ---------G CGA)AGGU-U AGCUAAUCU- 2221 CAUAAACUUC GUCUAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUGCAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGUCAU 2401 ACCCAAUAUC GUU---AGUC U-AACC-(-- --auuc---- --)-GG-GGG ACGGCGCUU- 2461 AAGG-UAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.Chara. 2540 bp RNA RNA ~?~???? DEFINITION Chara spec.. ACCESSION X75519 KEYWORDS No information. SOURCE Chara spec. ORGANISM Chara spec. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X75519 LOCUS CSPL16SR 1515 bp DNA PLN 08-JUN-1995 DEFINITION Chara spec. plastid 16S rRNA gene. ACCESSION X75519 KEYWORDS 16S ribosomal RNA. SOURCE Chara sp. ORGANISM Chara sp. Eukaryotae; mitochondrial eukaryotes; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Charales; Characeae; Chara. REFERENCE 1 (bases 1 to 1515) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. V. A. R. Huss, Inst fuer Botanik & Pharmazeutische, Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG REFERENCE 2 (bases 1 to 1515) AUTHORS Huss,V.A.R., Straub,S. and Kranz,H.D. JOURNAL Unpublished COMMENT NCBI gi: 860911 FEATURES Location/Qualifiers source 1..1515 /organism="Chara sp." /note="plastid" primer_bind 1..30 /note="PCR amplification 5'-primer" rRNA 1..1515 /product="16S small subunit ribosomal RNA" primer_bind complement(1493..1515) /note="PCR amplification 3'-primer" BASE COUNT 397 a 343 c 460 g 312 t 3 others ORIGIN BASE COUNT 397 a 343 c 460 g 312 t 1028 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG AA-----uau auugauuggu (uuca----- 121 )aucaaucaa uaua------ ---|UUCAGU --GGCGGACG GGUGAGUAA- CGCGUAAGG- 181 ACUUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGU ---------G GGGGAUAACA 301 A--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAA---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGUAAAA--- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCUA 481 GGA-GAG-|A -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU CG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |AUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(----UA 721 C--)GGGUC- --GUAAACUC C|UUUU-UUC AGAGACGAAA -Uc------( -------)-- 781 -------aUG AcGGU-AUCU GAAGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UCAG---|UC U-GCUGUUAA AAACUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU AG-------- AC---AGGCA GC-AGA-AAC UACU-AA--G -CUGGAG-UC 1081 CGGUA----- GAGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAUAUCG 1141 GAAAGAACGC CCAA---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACGAUGGA C----ACUA| AGUG-CUGGA cg-------- ---------- (auuugauc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUUCA-GUGC U-GGAGC--- --(UAAC)GC GU-UAAGUGU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UA-C U-GUGAG--U CCCUCU(GAA -A-)AGAGG- GAG---UGCC 1681 ---------( uucg-)---- -----GGAA- ---------- -----|CACG GAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UUUCUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuau--- )-------|G GAACUCUAGA GAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------UCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CAUCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGUU---- 2161 GCAACCCU(- ---------- ---------- ---------G CGA)AGGC-G AGCUAACCU- 2221 CAAAAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUC AAGGCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGACCAU 2401 GCCCGAAGUC GUU---ACCC U-AACC-(uu aaauuacuua a-)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.C.para 2540 bp RNA RNA ~?~???? DEFINITION Cyanophora paradoxa. ACCESSION X81840 KEYWORDS No information. SOURCE Cyanophora paradoxa. ORGANISM Cyanophora paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X81840 LOCUS Cpar16S_ 1514 BP DEFINITION Cyanophora paradoxa plastid 16S rRNA, Kies strain, X81840, d, Bhattacha ORIGIN BASE COUNT 396 a 329 c 460 g 319 t 1036 others ORIGIN 1 |--------- ---GUGCUGC AGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA AG-------- -------auc (gcaa----- 121 )gau------ ---------- ---|CUUAGU --GGCGGACG GGUGAGUAA- CGCGUGAGA- 181 AUCUAC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGACAACA 301 G--------- ---------- ------UUG( GAAA)CGA-C UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----GCCauu uaa-(GUAAa a-)uuaaauu GGUGAAA--- 421 ---------- ---------- AGA------- (-----guaa -)-----|-- -UCUGCCUGA 481 GGA-ANA-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(G-UAAA GG)CCUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 UACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAAGAAG GCC(---UGU 721 G--)GG-UU- --GUAAACCU C|UUUU-CUU AGGGAAGAAU Aa-------( -------)-- 781 -------aUG AcGGU-ACCU AAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUCAUUGGG CGUAAAGAGU 901 UCGUAGGUG- ---|GCUAAG CAAG---|UC U-GUUGUUAA AGGCUGGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCC AA-------- AA---AGGCA AU-GGA-AAC UGUU-UG--G -CUCGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCUG G-UGUAGCG( GUGAAA)UGC GUAGAUAUCA 1141 GGAAGAACAC CGAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-GAACGAAA GCUAGGGUAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACUAUGGA U----ACUA| GGUG-UUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUACA-GUAC C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-U C-GCGAA--U UUUCUU(GAA -A-)GAGAA- AAG---UGC- 1681 ---------( uucg-)---- -----GGAA- ---------- -----|CGCG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UUUUUA-G-U UGCC-agca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuaagu-- )-----ug|G GCACUCUAAA GAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UACCCUGGGC UACACACGUA CUACAAUGGU --CGGGACAA UAGGUU---- 2161 GCCAACUU(- ---------- ---------- ---------G CGA)AAGU-G AGCUAAUCC- 2221 NUUAAACCCG GCCUCAGUUC AGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCACGGG AGUCGGCCAU 2401 GCC-GAAGUC GUU---ACCC U-AACC-(-- -auuuc---- --)-GG-AGG GGGAUGCCU- 2461 AAGG-CAGGG CUGGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGU 2521 GGCUGGAUCA CCUCCUUG-| // LOCUS Cya.parado 2540 bp RNA RNA ~?~???? DEFINITION Cyanophora paradoxa cyanelle. ACCESSION U30821 KEYWORDS No information. SOURCE Cyanophora paradoxa cyanelle. ORGANISM Cyanophora paradoxa cyanelle. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U30821 LOCUS CPU30821 135599 bp DNA circular PLN 10-OCT-1995 DEFINITION Cyanophora paradoxa cyanelle, complete genome. ACCESSION U30821 KEYWORDS . SOURCE Cyanophora paradoxa. ORGANISM Cyanelle Cyanophora paradoxa Eukaryotae; mitochondrial eukaryotes; Glaucocystophyceae; Cyanophoraceae; Cyanophora. REFERENCE 1 (bases 1 to 135599) AUTHORS Stirewalt,V.L., Michalowski,C.B., Luffelhardt,W., Bohnert,H.J. and Bryant,D.A. TITLE Nucleotide sequence of the cyanelle genome from Cyanophora paradoxa JOURNAL Unpublished REFERENCE 2 (bases 1 to 135599) AUTHORS Bryant,D.A. TITLE Direct Submission JOURNAL Submitted (01-JUL-1995) Donald A. Bryant, Biochemistry and Molecular Biology, The Pennsylvania State University, S-234 Frear Bldg., University Park, PA 16802, USA COMMENT NCBI gi: 1016083 FEATURES Location/Qualifiers source 1..135599 /cyanelle /strain="Pringsheim LB555" /organism="Cyanophora paradoxa" repeat_region 1..11285 /note="IR-A" /rpt_type=inverted rRNA 294..1788 /gene="rrsA" /product="16S ribosomal RNA" tRNA 1889..1962 /gene="trnI" /note="anticodon (GAU)" /product="tRNA isoleucine" tRNA 1966..2038 /gene="trnA" /note="anticodon (UGC)" /product="tRNA alanine" rRNA 2076..5001 /gene="rrlA" /product="23S ribosomal RNA" rRNA 5102..5219 /gene="rrfA" /product="5S ribosomal RNA" CDS 5727..7598 /gene="dnaK" /note="NCBI gi: 1016084" /codon_start=1 /function="molecular chaperone; heat-shock protein; protein folding" /product="DnaK" /translation="MEVKHMGKIVGIDLGTTNSVVAVMEGGKPTVITNAEGFRTTPSV VAYTKTGDRLVGQIAKRQAVLNPGNTFYSVKRFIGRKFDEVTEEAKQVPYKVTGTQNV RIECPALQTSFTPEEISAQVLRKLAEDASKYIGEPVTQAVITVPAYFNDSQRQATKDA GKIAGLEVLRIINEPTAASLAYGLDKKKNETILVFDLGGGTFDVSILEVGDGVFEVLS TSGDTHLGGDDFDKKLVDFFIEEFQKLENINLREDQQALQRLTEAAEKAKIELSSVTQ TEITLPFLSLTPSGPKHFDTTLNRAKFEELCSTLIDRCRIPVETALKDAKLTKEDIDE VVLVGGSTRIPAVRELVQKVLDKVPKQSVNPDEVVAVGAAVQAGVLAGEVKDIVLLDV TPLSLGVETLGGVMSKIIVRNTTIPTQKSELFSTATDGQTNVEIHVLQGERGFAKDNK SLGTFRLDGIAPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEKSITITGASTLSQD EVERMVQEAEKNAAQDKENRQKIELRNQAESLINQAERQLKEFKLEPNVQAPIEQTIQ QLQTALKEDNLEQVQSLCQELQNSLLEIGKQVYSKTETTTPNKNEEDVIDASFSEEK" BASE COUNT 46690 a 21195 c 20119 g 47595 t ORIGIN BASE COUNT 384 a 335 c 458 g 318 t 1045 others ORIGIN 1 |--------- ---~UACCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA AG-------- -------auc (gcaa----- 121 )gau------ ---------- ---|CUUAGU --GGCGGACG GGUGAGUAA- CGCGUGAGA- 181 AUCUAC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGACAACA 301 G--------- ---------- ------UUG( GAAA)CGA-C UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----gcca-- ----(uucg- --)------u ggugaaa--- 421 ---------- ---------- aga------- (-----guaa -)-----|-- -ucuGCCUGA 481 GGA-AGA-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(G-UAAA GG)CCUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 UACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAAGACG GCC(---ugu 721 g--)GG-UU- --GUAAACCU C|UUUU-CUU AGGGAAGAAU ca-------( -------)-- 781 -------AUG ACGGU-ACCU AAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUCAUUGGG CGUAAAGAGU 901 UCGUAGGUG- ---|GCUAAG CAAG---|UC U-GUUGUUAA AGGCUGGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCC AA-------- AA---AGGCA AU-GGA-AAC UGUU-UG--G -CUUGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCUG G-UGUAGCG( GUGAAA)UGC GUAGAUAUCA 1141 GGAAGAACAC CGAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-GAACGAAA GCUAGGGUAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACUAUGGA U----ACUA| GGUG-UUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUACA-GUAC C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-U C-GCGAA--U UUUCUU(GAA -A-)GAGAA- AAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UUUUUA-G-U UGCC-auca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uucagu-- )-----ug|G GCACUCUAAA GAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UACCCUGGGC UACACACGUA CUACAAUGGU --CGGGACAA UAGGUU---- 2161 GCCAACUU(- ---------- ---------- ---------G CGA)AAGU-G AGCUAAUCCG 2221 -UUAAACCCG GCCUCAGUUC AGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCACGGG AGUCGGCCAU 2401 GCCCGAAGUC GUU---ACCC U-AACC-(-- -auuuc---- --)-GG-AGG GGGAUGCCU- 2461 AAGG-CAGGG CUGGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.Odo.si 2540 bp RNA RNA ~?~???? DEFINITION Odontella sinensis. ACCESSION Z67753 KEYWORDS No information. SOURCE Odontella sinensis. ORGANISM Odontella sinensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: Z67753 LOCUS OSCHLPLXX 119704 bp DNA PLN 13-FEB-1996 DEFINITION O.sinensis chloroplast DNA, complete genome. ACCESSION Z67753 NID g1185127 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 30S ribosomal protein S10; 30S ribosomal protein S11; 30S ribosomal protein S12; 30S ribosomal protein S13; 30S ribosomal protein S14; 30S ribosomal protein S16; 30S ribosomal protein S17; 30S ribosomal protein S18; 30S ribosomal protein S19; 30S ribosomal protein S2; 30S ribosomal protein S20; 30S ribosomal protein S3; 30S ribosomal protein S4; 30S ribosomal protein S5; 30S ribosomal protein S6; 30S ribosomal protein S7; 30S ribosomal protein S8; 30S ribosomal protein S9; 50S ribosomal protein L1; 50S ribosomal protein L11; 50S ribosomal protein L12; 50S ribosomal protein L13; 50S ribosomal protein L14; 50S ribosomal protein L16; 50S ribosomal protein L18; 50S ribosomal protein L19; 50S ribosomal protein L2; 50S ribosomal protein L20; 50S ribosomal protein L21; 50S ribosomal protein L22; 50S ribosomal protein L23; 50S ribosomal protein L24; 50S ribosomal protein L27; 50S ribosomal protein L29; 50S ribosomal protein L3; 50S ribosomal protein L31; 50S ribosomal protein L32; 50S ribosomal protein L33; 50S ribosomal protein L34; 50S ribosomal protein L35; 50S ribosomal protein L36; 50S ribosomal protein L4; 50S ribosomal protein L5; 50S ribosomal protein L6; 5S ribosomal RNA; 5S rRNA gene; acp gene; acyl carrier protein; apocytochrome f; ATP synthase CF1; ATP synthase CFO; atpA gene; atpB gene; atpD gene; atpE gene; atpF gene; atpG gene; atpH gene; atpI gene; cfxQ gene; chaperonin; chlI gene; clp protease; clpC gene; complete genome; CP43 chlorophyll apoprotein; CP47 chlorophyll apoprotein; cytochrome b559; cytochrome b6; cytochrome b6/f complex; cytochrome c550; D1 reaction-center protein; D2 reaction-center protein; DNA-replication helicase; dnaB gene; dnaK gene; elongation factor tu; Fe-S polypeptide; ferredoxin; ferredoxin-binding protein II; groEL gene; orf 179; ORF 25; ORF 312; ORF 644; ORF113; ORF128; ORF148; ORF181; ORF204; ORF251; ORF263; ORF26a; ORF26b; ORF27; ORF29; ORF29a; ORF29b; ORF31; ORF319; ORF34; ORF355; ORF355 gene; ORF36; ORF380; ORF382; ORF41; ORF42; ORF44; ORF455; ORF46; ORF486; ORF497; ORF61; ORF64; ORF73; ORF74; ORF99; P700 apoprotein A1; P700 apoprotein A2; petA gene; petB gene; petD gene; petF gene; petG gene; petK gene; phosphoprotein; plastocyanin-binding; preprotein-translocase; protein I; protein J; protein K; protein L; protein M; protein N; protein T; protein W; protein X; psaA gene; psaB gene; psaC gene; psaD gene; psaE gene; psaF gene; psaI gene; psaJ gene; psaL gene; psaM gene; psbA gene; psbB gene; psbC gene; psbD gene; psbE gene; psbF gene; psbH gene; psbI gene; psbJ gene; psbK gene; psbL gene; psbN gene; psbT gene; psbV gene; psbW gene; psbX gene; PSI; PSII; rbcL gene; rbcR gene; rbcs gene; RNA polymerase; RNA polymerase b''-chain; RNA polymerase b'-chain; RNA polymerase b-chain; rpL1 gene; rpl11 gene; rpl12 gene; rpl13 gene; rpl14 gene; rpl16 gene; Rpl18 gene; rpL19 gene; rpl2 gene; rpl20 gene; rpl21 gene; rpl22 gene; rpl23 gene; rpl24 gene; rpl27 gene; rpL29 gene; rpL3 gene; rpL31 gene; rpl32 gene; rpl32' gene; rpl33 gene; rpL34 gene; rpl35 gene; rpl36 gene; rpL4 gene; rpl5 gene; rpl6 gene; rpoA gene; rpoB gene; rpoC1 gene; rpoC2 gene; rps10 gene; rps11 gene; rps12 gene; rps13 gene; rps14 gene; rps16 gene; rps17 gene; rps18 gene; rps19 gene; rps2 gene; rps20 gene; rps3 gene; rps4 gene; RPS5 gene; RPS6 gene; rps7 gene; rps8 gene; rps9 gene; rubisco large subunit; rubisco small subunit; secA gene; secY gene; thiG gene; trnA gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-fMet; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val; trnC gene; trnD gene; trnE gene; trnF gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnk gene; trnL gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnR gene; trnS gene; trnT gene; trnV gene; trnW gene; trnY gene; trsE gene; tufA gene; ycf12 gene; ycf16 gene; ycf24 gene; ycf25 gene; ycf3 gene; ycf30 gene; ycf31 gene; ycf32 gene; ycf33 gene; ycf35 gene; ycf39 gene; ycf4 gene; ycf40 gene; ycf41 gene; ycf42 gene; ycf43 gene; ycf44 gene; ycf45 gene; ycf46 gene; ycf47 gene; ycf5 gene; ycf6 gene; ycf7 gene; ycf9 gene. SOURCE Odontella sinensis. ORGANISM Chloroplast Odontella sinensis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; Eupodiscales; Eupodiscaceae; Odontella. REFERENCE 1 (bases 1 to 119704) AUTHORS Kowallik,K.V. JOURNAL Unpublished REFERENCE 2 (bases 1 to 119704) AUTHORS Kowallik,K.V. TITLE Direct Submission JOURNAL Submitted (10-NOV-1995) K.V. Kowallik, Heinrich-Heine Universitaet Duesseldorf, Universitaetsstr. 1 Geb.26 13/02/46, D- 40225, Duesseldorf, FRG COMMENT NCBI gi: 1185127 FEATURES Location/Qualifiers source 1..119704 /organism="Odontella sinensis" /chloroplast misc_feature 1..7725 /note="IRa" tRNA 267..340 /gene="trnP" /product="tRNA-Pro (ugg)" CDS 478..1545 /gene="ORF355" /note="NCBI gi: 1185128" /codon_start=1 /db_xref="PID:g1185128" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" rRNA 2210..3694 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 3761..3835 /gene="16S rRNA" /product="tRNA-Ile (gau)" tRNA 3838..3910 /gene="trnA" /product="tRNA-Ala (ugc)" rRNA 3976..6866 /gene="23S rRNA" /product="23S ribosomal RNA" rRNA 6938..7063 /gene="5S rRNA" /product="5S ribosomal RNA" CDS 7318..7428 /gene="ycf32" /note="NCBI gi: 1185129" /codon_start=1 /product="ORF36" /db_xref="PID:g1185129" /translation="MDSRLLVIAAPLLVAASWALFNIGRLAIQQIQRLSA" CDS 7563..7739 /gene="rpl32" /note="NCBI gi: 1185130" /codon_start=1 /product="50S ribosomal protein L32" /db_xref="PID:g1185130" /translation="MAVPKKRTSKAKKNARKSVWKKKADKAAKKSLSLAKSVLQGKTT SFVYSLYIDELFSI" CDS 7825..8073 /gene="psaC" /note="NCBI gi: 1185131" /codon_start=1 /product="PSI, Fe-S polypeptide SU VII, 9 kDa" /db_xref="PID:g1185131" /translation="MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKSGQIASSPR VEDCVGCKRCETACPTDFLSVRVYLGRLETTRSLGLAY" CDS complement(8139..9077) /gene="ycf5" /note="NCBI gi: 1185132" /codon_start=1 /product="ORF312" /db_xref="PID:g1185132" /translation="MDWDIIQNLSSNLVFGILLFAMTIYWISLSFFKWTKNLSQVGKI SAIVANILLFFILGSRWIVAGYFPLSNLYESLLFLTWTLLTIYLYVEFKTKSKLVGAI LIPVALLINGFANLTLSVDMQKSSPLVPALQSNWLMLHVSMMMLSYGTLIMGSLLCIL FLVISKYQDIDLQILDESSLPLYNIMLDYYEAKLFSPSDEVSELGKLKLLQSLDNWSY RIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIVFATYLHSRITKGWE GKKTAILGGLGFFVIWICYLGVNFLGKGLHSYGWLS" CDS 9287..9427 /gene="ycf32" /note="A+T-rich; NCBI gi: 1185133" /codon_start=1 /product="ORF46" /db_xref="PID:g1185133" /translation="MEKIKKSYLLVAKLKFKYFCLKPYSLNSTTKFILKIIKNKSMLI FN" CDS 9482..9772 /gene="rps6" /note="NCBI gi: 1185134" /codon_start=1 /product="30S ribosomal protein S6" /db_xref="PID:g1185134" /translation="MSATKKYEMMILLTEEFNDSELKTWAFNYAKALRKLSASEISVI SRGKRDLSYYINNQKKGNFIQINFSSMPKYVDNFSKNLKFDSNVLRFLILNK" tRNA 9852..9922 /gene="trnN" /product="tRNA-Asn (guu)" CDS 9944..10729 /gene="thiG" /note="NCBI gi: 1185135" /codon_start=1 /function="involved in thiamine biosynthesis" /db_xref="PID:g1185135" /translation="MINNSDTLKIGNKTFNSRLMLGSGKYRTIENAVNSIITSDCEIL TVAVRRLPTKLTNDNTSFLKSLDWNKLWLLPNTAGSQTAEEAIRMAFLGHELACQLGQ EDNFFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLALHLEDLGCA TVMPLGSPIGSGQGLNNISNLQIIIENSSIPVIIDAGIGTPSEAAKSMELGADGVLLN TAIAQAKTPEKMALAMKLAVEAGRLGYLAGRMEKNRMQVQVLH" CDS complement(10894..13551) /gene="clpC" /note="NCBI gi: 1185136" /codon_start=1 /product="caseinolytic-like Clp protease" /db_xref="PID:g1185136" /translation="MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGI GARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNF VGTEHILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIEENQEEILRPLTQAEKFL LEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLIG EPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVE EVQNDSAIILVIDEIHTLVGAGAAEGAVDAANILKPALARGKFRCIGATTIDEYRKYI ERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI ADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAK QLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDTVLEGDVAEVIAGWTGIPVNKISD SESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGK TELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQTK PYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKIIEK ESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFL NRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVY GARPLRRAVMRLLEDTLAQQCLSKPLYPGTILRVSRVKEEGTLASYTNDVKVEIDYRR VDPRLLEQAEEKKEQNQEETKQNILKTDA" tRNA 13780..13850 /gene="trnC" /product="tRNA-Cys (gca)" tRNA 13921..14006 /gene="trnL" /product="tRNA-Leu (uaa)" rRNA complement(47296..47421) /gene="trnR" /product="5S ribosomal RNA" rRNA complement(47493..50383) /gene="trnR" /product="23S ribosomal RNA" tRNA complement(50449..50521) /gene="trnR" /product="tRNA-Ala (ugc)" tRNA complement(50524..50598) /gene="trnR" /product="tRNA-Ile (gau)" rRNA complement(50665..52149) /gene="trnR" /product="16S ribosomal RNA" CDS complement(52814..53881) /gene="trnR" /note="NCBI gi: 1185184" /codon_start=1 /product="ORF355" /db_xref="PID:g1185184" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" tRNA complement(54019..54092) /gene="trnR" /product="tRNA-Pro (ugg)" BASE COUNT 40523 a 19364 c 18721 g 41096 t ORIGIN BASE COUNT 412 a 303 c 422 g 348 t 1055 others ORIGIN 1 |--------- ---nnUAUUA AGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- AACACAUGCA AGUCGUACGA GA-------- -------guu (uuu------ 121 )aac------ ---------- ---|UCAAGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----GCU--- ----(uucg- --)------- AGUGAAAU-- 421 ---------- ---------- AGA------- (-----uuua -)-----|-- -UCUGCCUAA 481 AGA-GGA-|G -CUCGCGG|- CUGAUUA-GC UU-GUUGGUA A-G(G-UAAU GG)CUUACCA 541 A|GGCGACGA UCAGUAUCUG |GUUU(GAGA )GGACGAUCA GA|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAAGACG GCC(---uau 721 g--)GG-UU- --GUAAACCU C|UUUU-CUC AGGGAGGAAA -uca-----( -------)-- 781 -------aUG ACGUGUACCU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)GACGGAG |GAU-GCAAG UGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAA UAAG---|UC A-ACUGUUAA AUCUUGAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACUUC AA-------- AA---UCGCA GU-CGA-AAC UAUU-AG--A -CUAGAG-UA 1081 UAGUA----- GGGGUAAAG| GGAAUUUCCA G-UGGAGCG( GUGAAA)UGC GUAGAGAUUG 1141 GAAAGAACAC CGAU---GGC (GAAG)GCAC UUUA-CUGGG CUA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUAACACUCA 1261 G-AGACGAAA GCUAGGGUAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACAAUGGA U----ACUA| GAUG-UUGAA CAG------- ---------- (-aucgac-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|CU GUGCA-GUAU U-AAAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-A U-ACGAA--U UUCUUU(GAA -A-)GAAGA- AAG---UGCC 1681 ---------( GUUU-)---- -----GGAA- ---------- -----|CGUA UACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUA| UUUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuuau-- )-------|G GAACUCUAAA AAGACUGCCG GU(UAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGCG GGGAUGACGU -CAAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC UACACACGUG CUACAUUGGG --CGAGACAA UGAGAU---- 2161 GCUACUCU(- ---------- ---------- ---------G CGA)AGAC-A AGCUAAUCU- 2221 AU-AAACUCG UUCUAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUUAU 2401 GCCCGAAGUC GUU---ACUC U-AACC-(-- guuugga--- --)-GG-AGG ---AUGCCU- 2461 AAGG-UAGAA UUAGUGACUG GGGUGAAGUC GUAACAAGGU AACCGUACU( GGAA)GGUGC 2521 GGUUGGAUCA CCUCCUUU-| // LOCUS chl.Odo.si 2540 bp RNA RNA ~?~???? DEFINITION . ACCESSION Z67753 KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS LOCUS OSCHLPLXX 119704 bp DNA PLN 13-FEB-1996 DEFINITION O.sinensis chloroplast DNA, complete genome. ACCESSION Z67753 NID g1185127 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 30S ribosomal protein S10; 30S ribosomal protein S11; 30S ribosomal protein S12; 30S ribosomal protein S13; 30S ribosomal protein S14; 30S ribosomal protein S16; 30S ribosomal protein S17; 30S ribosomal protein S18; 30S ribosomal protein S19; 30S ribosomal protein S2; 30S ribosomal protein S20; 30S ribosomal protein S3; 30S ribosomal protein S4; 30S ribosomal protein S5; 30S ribosomal protein S6; 30S ribosomal protein S7; 30S ribosomal protein S8; 30S ribosomal protein S9; 50S ribosomal protein L1; 50S ribosomal protein L11; 50S ribosomal protein L12; 50S ribosomal protein L13; 50S ribosomal protein L14; 50S ribosomal protein L16; 50S ribosomal protein L18; 50S ribosomal protein L19; 50S ribosomal protein L2; 50S ribosomal protein L20; 50S ribosomal protein L21; 50S ribosomal protein L22; 50S ribosomal protein L23; 50S ribosomal protein L24; 50S ribosomal protein L27; 50S ribosomal protein L29; 50S ribosomal protein L3; 50S ribosomal protein L31; 50S ribosomal protein L32; 50S ribosomal protein L33; 50S ribosomal protein L34; 50S ribosomal protein L35; 50S ribosomal protein L36; 50S ribosomal protein L4; 50S ribosomal protein L5; 50S ribosomal protein L6; 5S ribosomal RNA; 5S rRNA gene; acp gene; acyl carrier protein; apocytochrome f; ATP synthase CF1; ATP synthase CFO; atpA gene; atpB gene; atpD gene; atpE gene; atpF gene; atpG gene; atpH gene; atpI gene; cfxQ gene; chaperonin; chlI gene; clp protease; clpC gene; complete genome; CP43 chlorophyll apoprotein; CP47 chlorophyll apoprotein; cytochrome b559; cytochrome b6; cytochrome b6/f complex; cytochrome c550; D1 reaction-center protein; D2 reaction-center protein; DNA-replication helicase; dnaB gene; dnaK gene; elongation factor tu; Fe-S polypeptide; ferredoxin; ferredoxin-binding protein II; groEL gene; orf 179; ORF 25; ORF 312; ORF 644; ORF113; ORF128; ORF148; ORF181; ORF204; ORF251; ORF263; ORF26a; ORF26b; ORF27; ORF29; ORF29a; ORF29b; ORF31; ORF319; ORF34; ORF355; ORF355 gene; ORF36; ORF380; ORF382; ORF41; ORF42; ORF44; ORF455; ORF46; ORF486; ORF497; ORF61; ORF64; ORF73; ORF74; ORF99; P700 apoprotein A1; P700 apoprotein A2; petA gene; petB gene; petD gene; petF gene; petG gene; petK gene; phosphoprotein; plastocyanin-binding; preprotein-translocase; protein I; protein J; protein K; protein L; protein M; protein N; protein T; protein W; protein X; psaA gene; psaB gene; psaC gene; psaD gene; psaE gene; psaF gene; psaI gene; psaJ gene; psaL gene; psaM gene; psbA gene; psbB gene; psbC gene; psbD gene; psbE gene; psbF gene; psbH gene; psbI gene; psbJ gene; psbK gene; psbL gene; psbN gene; psbT gene; psbV gene; psbW gene; psbX gene; PSI; PSII; rbcL gene; rbcR gene; rbcs gene; RNA polymerase; RNA polymerase b''-chain; RNA polymerase b'-chain; RNA polymerase b-chain; rpL1 gene; rpl11 gene; rpl12 gene; rpl13 gene; rpl14 gene; rpl16 gene; Rpl18 gene; rpL19 gene; rpl2 gene; rpl20 gene; rpl21 gene; rpl22 gene; rpl23 gene; rpl24 gene; rpl27 gene; rpL29 gene; rpL3 gene; rpL31 gene; rpl32 gene; rpl32' gene; rpl33 gene; rpL34 gene; rpl35 gene; rpl36 gene; rpL4 gene; rpl5 gene; rpl6 gene; rpoA gene; rpoB gene; rpoC1 gene; rpoC2 gene; rps10 gene; rps11 gene; rps12 gene; rps13 gene; rps14 gene; rps16 gene; rps17 gene; rps18 gene; rps19 gene; rps2 gene; rps20 gene; rps3 gene; rps4 gene; RPS5 gene; RPS6 gene; rps7 gene; rps8 gene; rps9 gene; rubisco large subunit; rubisco small subunit; secA gene; secY gene; thiG gene; trnA gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-fMet; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val; trnC gene; trnD gene; trnE gene; trnF gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnk gene; trnL gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnR gene; trnS gene; trnT gene; trnV gene; trnW gene; trnY gene; trsE gene; tufA gene; ycf12 gene; ycf16 gene; ycf24 gene; ycf25 gene; ycf3 gene; ycf30 gene; ycf31 gene; ycf32 gene; ycf33 gene; ycf35 gene; ycf39 gene; ycf4 gene; ycf40 gene; ycf41 gene; ycf42 gene; ycf43 gene; ycf44 gene; ycf45 gene; ycf46 gene; ycf47 gene; ycf5 gene; ycf6 gene; ycf7 gene; ycf9 gene. SOURCE Odontella sinensis. ORGANISM Chloroplast Odontella sinensis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; Eupodiscales; Eupodiscaceae; Odontella. REFERENCE 1 (bases 1 to 119704) AUTHORS Kowallik,K.V. JOURNAL Unpublished REFERENCE 2 (bases 1 to 119704) AUTHORS Kowallik,K.V. TITLE Direct Submission JOURNAL Submitted (10-NOV-1995) K.V. Kowallik, Heinrich-Heine Universitaet Duesseldorf, Universitaetsstr. 1 Geb.26 13/02/46, D- 40225, Duesseldorf, FRG COMMENT NCBI gi: 1185127 FEATURES Location/Qualifiers source 1..119704 /organism="Odontella sinensis" /chloroplast misc_feature 1..7725 /note="IRa" tRNA 267..340 /gene="trnP" /product="tRNA-Pro (ugg)" CDS 478..1545 /gene="ORF355" /note="NCBI gi: 1185128" /codon_start=1 /db_xref="PID:g1185128" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" rRNA 2210..3694 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 3761..3835 /gene="16S rRNA" /product="tRNA-Ile (gau)" tRNA 3838..3910 /gene="trnA" /product="tRNA-Ala (ugc)" rRNA 3976..6866 /gene="23S rRNA" /product="23S ribosomal RNA" rRNA 6938..7063 /gene="5S rRNA" /product="5S ribosomal RNA" CDS 7318..7428 /gene="ycf32" /note="NCBI gi: 1185129" /codon_start=1 /product="ORF36" /db_xref="PID:g1185129" /translation="MDSRLLVIAAPLLVAASWALFNIGRLAIQQIQRLSA" CDS 7563..7739 /gene="rpl32" /note="NCBI gi: 1185130" /codon_start=1 /product="50S ribosomal protein L32" /db_xref="PID:g1185130" /translation="MAVPKKRTSKAKKNARKSVWKKKADKAAKKSLSLAKSVLQGKTT SFVYSLYIDELFSI" CDS 7825..8073 /gene="psaC" /note="NCBI gi: 1185131" /codon_start=1 /product="PSI, Fe-S polypeptide SU VII, 9 kDa" /db_xref="PID:g1185131" /translation="MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKSGQIASSPR VEDCVGCKRCETACPTDFLSVRVYLGRLETTRSLGLAY" CDS complement(8139..9077) /gene="ycf5" /note="NCBI gi: 1185132" /codon_start=1 /product="ORF312" /db_xref="PID:g1185132" /translation="MDWDIIQNLSSNLVFGILLFAMTIYWISLSFFKWTKNLSQVGKI SAIVANILLFFILGSRWIVAGYFPLSNLYESLLFLTWTLLTIYLYVEFKTKSKLVGAI LIPVALLINGFANLTLSVDMQKSSPLVPALQSNWLMLHVSMMMLSYGTLIMGSLLCIL FLVISKYQDIDLQILDESSLPLYNIMLDYYEAKLFSPSDEVSELGKLKLLQSLDNWSY RIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIVFATYLHSRITKGWE GKKTAILGGLGFFVIWICYLGVNFLGKGLHSYGWLS" CDS 9287..9427 /gene="ycf32" /note="A+T-rich; NCBI gi: 1185133" /codon_start=1 /product="ORF46" /db_xref="PID:g1185133" /translation="MEKIKKSYLLVAKLKFKYFCLKPYSLNSTTKFILKIIKNKSMLI FN" CDS 9482..9772 /gene="rps6" /note="NCBI gi: 1185134" /codon_start=1 /product="30S ribosomal protein S6" /db_xref="PID:g1185134" /translation="MSATKKYEMMILLTEEFNDSELKTWAFNYAKALRKLSASEISVI SRGKRDLSYYINNQKKGNFIQINFSSMPKYVDNFSKNLKFDSNVLRFLILNK" tRNA 9852..9922 /gene="trnN" /product="tRNA-Asn (guu)" CDS 9944..10729 /gene="thiG" /note="NCBI gi: 1185135" /codon_start=1 /function="involved in thiamine biosynthesis" /db_xref="PID:g1185135" /translation="MINNSDTLKIGNKTFNSRLMLGSGKYRTIENAVNSIITSDCEIL TVAVRRLPTKLTNDNTSFLKSLDWNKLWLLPNTAGSQTAEEAIRMAFLGHELACQLGQ EDNFFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLALHLEDLGCA TVMPLGSPIGSGQGLNNISNLQIIIENSSIPVIIDAGIGTPSEAAKSMELGADGVLLN TAIAQAKTPEKMALAMKLAVEAGRLGYLAGRMEKNRMQVQVLH" CDS complement(10894..13551) /gene="clpC" /note="NCBI gi: 1185136" /codon_start=1 /product="caseinolytic-like Clp protease" /db_xref="PID:g1185136" /translation="MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGI GARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNF VGTEHILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIEENQEEILRPLTQAEKFL LEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLIG EPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVE EVQNDSAIILVIDEIHTLVGAGAAEGAVDAANILKPALARGKFRCIGATTIDEYRKYI ERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI ADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAK QLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDTVLEGDVAEVIAGWTGIPVNKISD SESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGK TELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQTK PYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKIIEK ESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFL NRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVY GARPLRRAVMRLLEDTLAQQCLSKPLYPGTILRVSRVKEEGTLASYTNDVKVEIDYRR VDPRLLEQAEEKKEQNQEETKQNILKTDA" tRNA 13780..13850 /gene="trnC" /product="tRNA-Cys (gca)" tRNA 13921..14006 /gene="trnL" /product="tRNA-Leu (uaa)" rRNA complement(47296..47421) /gene="trnR" /product="5S ribosomal RNA" rRNA complement(47493..50383) /gene="trnR" /product="23S ribosomal RNA" tRNA complement(50449..50521) /gene="trnR" /product="tRNA-Ala (ugc)" tRNA complement(50524..50598) /gene="trnR" /product="tRNA-Ile (gau)" rRNA complement(50665..52149) /gene="trnR" /product="16S ribosomal RNA" CDS complement(52814..53881) /gene="trnR" /note="NCBI gi: 1185184" /codon_start=1 /product="ORF355" /db_xref="PID:g1185184" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" tRNA complement(54019..54092) /gene="trnR" /product="tRNA-Pro (ugg)" BASE COUNT 40523 a 19364 c 18721 g 41096 t ORIGIN BASE COUNT 412 a 303 c 422 g 348 t 1055 others ORIGIN 1 |--------- ---nnUAUUA AGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- AACACAUGCA AGUCGUACGA GA-------- -------guu (uuu------ 121 )aac------ ---------- ---|UCAAGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAU---- 361 ---------- ---------- ----GCU--- ----(uucg- --)------- AGUGAAAU-- 421 ---------- ---------- AGA------- (-----uuua -)-----|-- -UCUGCCUAA 481 AGA-GGA-|G -CUCGCGG|- CUGAUUA-GC UU-GUUGGUA A-G(G-UAAU GG)CUUACCA 541 A|GGCGACGA UCAGUAUCUG |GUUU(GAGA )GGACGAUCA GA|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAAGACG GCC(---uau 721 g--)GG-UU- --GUAAACCU C|UUUU-CUC AGGGAGGAAA -UCA-----( -------)-- 781 -------aUG ACGUGUACCU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)GACGGAG |GAU-GCAAG UGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAA UAAG---|UC A-ACUGUUAA AUCUUGAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACUUC AA-------- AA---UCGCA GU-CGA-AAC UAUU-AG--A -CUAGAG-UA 1081 UAGUA----- GGGGUAAAG| GGAAUUUCCA G-UGGAGCG( GUGAAA)UGC GUAGAGAUUG 1141 GAAAGAACAC CGAU---GGC (GAAG)GCAC UUUA-CUGGG CUA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUAACACUCA 1261 G-AGACGAAA GCUAGGGUAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACAAUGGA U----ACUA| GAUG-UUGAA CAG------- ---------- (-aucgac-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|CU GUGCA-GUAU U-AAAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-A U-ACGAA--U UUCUUU(GAA -A-)GAAGA- AAG---UGCC 1681 ---------( GUUU-)---- -----GGAA- ---------- -----|CGUA UACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUA| UUUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuuau-- )-------|G GAACUCUAAA AAGACUGCCG GU(UAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGCG GGGAUGACGU -CAAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC UACACACGUG CUACAUUGGG --CGAGACAA UGAGAU---- 2161 GCUACUCU(- ---------- ---------- ---------G CGA)AGAC-A AGCUAAUCU- 2221 AU-AAACUCG UUCUAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUUAU 2401 GCCCGAAGUC GUU---ACUC U-AACC-(-- guuugga--- --)-GG-AGG ---AUGCCU- 2461 AAGG-UAGAA UUAGUGACUG GGGUGAAGUC GUAACAAGGU AACCGUACU( GGAA)GGUGC 2521 GGUUGGAUCA CCUCCUUU-| // LOCUS chl.Ochros 2540 bp RNA RNA ~?~???? DEFINITION Ochrosphaera spec.. ACCESSION X65101 KEYWORDS No information. SOURCE Ochrosphaera spec. ORGANISM Ochrosphaera spec. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X65101 ID OSSSRRNA standard; DNA; ORG; 1483 BP. XX AC X65101; XX DT 08-APR-1992 (Rel. 31, Last updated, Version 1) DT 08-APR-1992 (Rel. 31, Created) XX DE O.spec. plastid DNA for 16S-like rRNA small subunit XX KW small subunit ribosomal RNA. XX OS Ochrosphaera spec. OC Eukaryota; Plantae; Thallobionta; Haptophyta; Prymnesiophyceae; OC Isochrysidales; Isochrysidaceae. XX OG Plastid XX RN [1] RP 1-1483 RA Huss V.A.; RT ; RL Submitted (19-MAR-1992) on tape to the EMBL Data Library by: RL V.A. Huss, Institut fuer Botanik und, Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr.5, W-8520 Erlangen, FRG XX RN [2] RP 1-1483 RA Huss V.A.R., Hirsh E., Giovannoni S.J.; RT ; RL Unpublished. XX CC *source: strain=181; XX FH Key Location/Qualifiers FH FT misc_feature 1..30 FT /note="PCR amplification primer" FT rRNA 1..1483 FT /product="small subunit rRNA" FT misc_feature 1460..1483 FT /note="PCR amplification primer" XX SQ Sequence 1483 BP; 395 A; 311 C; 432 G; 341 T; 4 other; BASE COUNT 395 a 311 c 432 g 341 t 1061 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA G--------- ------aguu (uuu------ 121 )aacu----- ---------- ---|CU-AGU --GGCGAACG GGUGCGUAA- UACGUGAGA- 181 AUCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGAAUAACU 301 G--------- ---------- ------UUG( GAAA)CGA-C AGCUAAAUCC CCAUAU---- 361 ---------- ---------- ----GCC--- ----(gaga- --)------- GGUGAAAU-- 421 ---------- ---------- AGU------- (-----uuau -)-----|-- -ACUGCCUAA 481 GGA-UGA-|G -CUCGCGC|- CUGAUUA-GC UU-GUUGGUA A-G(G-UAAU GG)CUUACCA 541 A|GGCCACGA UCAGUAGCUG |GUUU(GAGA )GAAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U C-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG GAU(---uuu 721 g--)GU-CU- --GUAAACCU C|UUUU-CUC AAGAAAGAAG U--------( -------)-- 781 ------ucUG ACGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUCAUUGGG CGUAAAGCGC 901 CUGUAGGUU- ---|GUCUAA UAAG---|UC U-GUUGUUAA AGACUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GA---AAGCG AU-GGA-AAC UACU-AG--G -CUUGAG-UA 1081 UGGUA----- GGGGUAGAG| GGAAUUUCUA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUA 1141 GAAAGAACAC CGGU---GGC (GAAA)GCGC UCUA-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGGCGAAA GCUAGGGGAG CAAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-UUGUA ---------- ---------- (-uyauua-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- -UACA-GUAU C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GGG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UA-C U-ACAAA--U CUUUUU(GAG -A-)CGAAA- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|UGUA GAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UUUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( aauuuauug- )-------|G GAUUUCUAGA GAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGCCCUGGGC CACACACGUG CUACAAUGAC --AAAGACAA AGAGUC---- 2161 GCAAAUUC(- ---------- ---------- ---------G CGA)GAAC-U AGCUAAUCUC 2221 AU-AAACUUU GUCCAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG -CAU)ACAGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGUCAU 2401 ACCCAACACC GUU---AGUC U-AACC-(-- --auuu---- --)-GG-AGG ACGGCGUCU- 2461 AAGG-UAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.A.long 2540 bp RNA RNA ~?~???? DEFINITION Astasia longa chloroplast. ACCESSION X14386 KEYWORDS No information. SOURCE Astasia longa chloroplast. ORGANISM Astasia longa chloroplast. REFERENCE 1 (bases 1 to 1473) AUTHORS No information JOURNAL EMBL ALCRDNA X14386 STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X14386 BASE COUNT 469 a 234 c 382 g 435 t 1020 others ORIGIN 1 |--------- ---GUGACAU GAAGAG-UU( U-GA)UCCU| UGCUCAGGAU UAACGCUGGC 61 GGUAUGCAU- AACACAUGCA AGUUGAACGG A--------- ---cucguuu (uaua----- 121 )aaaugag-- ---------- ---|UU-AGU --AGCAGACG GGUGAGUAA- UAUGUGAGA- 181 AUCUAC-GUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGU ---------G GGGGAUAACU 301 U--------- ---------- ------AUA( GAAA)UAU-U UGUUAAUACC CCAUAA---- 361 ---------- ---------- ----uug--- ----(ugcua --)------- uaaagua--- 421 ---------- ---------- aaa------- (-----auuu -)-----|-- -uuuGCCUAA 481 ACA-UGA-|G -CUUGCAU|- CUGAUUA-GU UU-GUUGGUU G-G(G-UAAU GG)CUUACCA 541 A|GACUUUGA UCAGUAGCUG |AUUU(GAGA )GAAUGGUCA GC|CACACUG GAA(UUGAGA 601 -ACG)GAACA GAC--UCC(U A-UG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GAGU-(-GA AA)-ACUU-G A-CGGA|GCA AUACCGCGUG UAGGAAGAAG GCU(---gua 721 u-u)AG-UU- --GUAAACUU C|UUUU-UUC AAAAAAGAAU A--------( -------)-- 781 ------AGUG ACGUU-AUUU GAAGAA-UAA GCAUCGGCU- AAUU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG UGUUAUCCGG AAUUAUUGGG CGUAAAGGGU 901 CAGGAGGUG- ---|GUAUUA UGUG---|UU U-AAUGUUAA AUGUUAAAGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACUUU AU-------- AA---AGGCA UU-GAA-AAC UGUA-AU--A -CUAGAG-UA 1081 UGGUA----- GAGGUAAAG| GGAAUUUCCA G-UGUAGCG( GUGAAA)UGC GUAAAUAUUG 1141 GAAAGAACAC CAAA---GGC (GAAG)GCAC UUUG-CUAGG CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACAUUGA 1261 G-AGACUAAA GCUAAGGUAG CAAACAGG(A UU-AGAU-AC )CCUGGUAGU CUUA-GCCGU 1321 AAACUAUGGA U----ACUA| AGUU-AUGaa gauucuguau uuauaugugu (-uagau--) 1381 auau------ ---------- ---------- ---------- ----|----- ---------- 1441 ----auauag auauga-|gg augCA-UUUC U-AAAGU--- --(UAAC)AC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUAUUCU U(GCAA)AAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACA)CGA AAAACCUUAC 1621 CAAGACUUGA CA----UG-C U-AGAGUaaa ugauua(uua -u-)uaauc- aug---u--- 1681 ------aau- uaaaa-a--- --------a- ---------- -----|UCUA GGCAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|A UC(GUGA)GA UGUAUGG(-U UUAGU)CCUA 1801 UAAC-GAGCG CAACCCUUA| UCUUUA-G-U UAa------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuug--- )-------|- -UAUAUUAAA GAaACUGCUG UU(GACAA-- 2041 -)-------- ---------- ------AUCA GAGGAAGGAG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCUUUA UGUCUUGGGC UACACACGUG CUACAAUGGU --UAAGACAA UUAGUU---- 2161 GCAAACUU(- ---------- ---------- ---------G UAA)AAGU-G AGCUAAUCUA 2221 -U-AAACUUA AUCUAAGUUC GGAUUGUAGG C(UGAAACUC )GUCUACAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUAU- -GUU------ 2341 ---------- ----CUCGGG CCUUGUACAC ACCGCCCGUC ACACCAAGGA AGUUAGUUGU 2401 GUUUGAUAUU GUU---UUUU U-AACC-(-- --uuuu---- --)-GG-GAA AUGAUAAUU- 2461 AGGG-CCUGG CUGGUGACCG UGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAAAA AUGUUU---| // LOCUS chl.E.grac 2540 bp RNA RNA 19-JAN-1982 DEFINITION chloroplast,Euglena gracilis. ACCESSION X12890 KEYWORDS No information. SOURCE chloroplast,Euglena gracilis. ORGANISM chloroplast,Euglena gracilis. REFERENCE 1 (bases 1 to 1473) AUTHORS No information JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2540) Corresponding GenBank entry: X12890 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 425 a 281 c 421 g 364 t 1049 others ORIGIN 1 |--------- ---UGGAAAU GACGAG-UU( U-GA)UCCU| UGCUCAGGGU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUUGAACGA A--------- ---auuacua (gcaa----- 121 )uaguaau-- ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- UAUGUAAGA- 181 AUCUGC-GCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGC ---------G AGGAAUAACA 301 G--------- ---------- ------AUG( GAAA)CGU-U UGCUAAUGCC UCAUAA---- 361 ---------- ---------- ----uuu--- ----(acu-- --)------- agaucuau-- 421 ---------- ---------g ugaguag-cu (--aguuaaa g)---ag|aa uuucGCCUAG 481 GCA-UGA-|G -CUUGCAU|- CUGAUUA-GC UU-GUUGGUG A-G(G-UAAA GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |AUUU(GAGA )GGAUGAUCA GC|CACACUG GGA(UUGAGA 601 -ACG)GAACA GAC--UUC(U A-CG)GA-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GC AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AAGGAAGACG GCC(---UUU 721 G--)GG-UU- --GAAAACCU C|UUUU-CUC AAAGAAGAAG A--------( -------)-- 781 ------AAUG ACGGU-AUUU GAGGAA-UAA GCAUCGGCU- AAUU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGA |GAU-GCGAG CGUUAUCCGG AAUUAUUGGG CGUAAAGAGU 901 UUGUAGGCG- ---|GUCAAG UGUG---|UU U-AAUGUUAA AAGUCAAAGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACUUU GG-------- AA---GGGCA UU-AAA-AAC UGCU-AG--A -CUUGAG-UA 1081 UGGUA----- GGGGUGAAG| GGAAUUUCCA G-UGUAGCG( GUGAAA)UGC GUAGAGAUUG 1141 GAAAGAACAC CAAU---GGC (GAAG)GCAC UUUU-CUAGG CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACGCUGA 1261 G-AAACGAAA GCUGAGGGAG CAAACAGG(A UU-AGAU-AC )CCUG-UAGU CUUG-GCCGU 1321 AAACUAUGGA U----ACUA| AGUG-GUGC- ---------- ---------- (-ugaaagu) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --GCA-CUGC U-GUAGU--- --(UAAC)AC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU U(GCAC)AAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACA)CGA AGAACCUUAC 1621 CAGGAUUUGA CA---ggauC U-AGGa---- -aguuu(GAA -A-)gaacg- caG---UACC 1681 ---------( UUCG-)---- -----GGUA- ---------- -----|UCUA GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUU| UUUUUA-A-U UAAC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --gcuu---- )-------|G UCA-UUUAGA AAUACUGCUG GU(U-AUU-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGACGACGU C-AAGUCAUC 2101 AUGCCCCUUA UAUCCUGGGC UACACACGUG CUACAAUGGU --UAAGACAA UAAGUU---- 2161 GCAAUUUU(- ---------- ---------- ---------G UGA)AAAU-G AGCUAAUCUU 2221 -a-AAACUUA GCCUAAGUUC GGAUUGUAGG C(UGAAACUC )GCCUACAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CuAU)ACGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CUCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGUCGGCUGU 2401 GCCCGAAGUU AUU---AUCU U-GCCU-(-- --gaaa---- --)-AG-AGG GAAAUACCU- 2461 AAGG-CCUGG CUGGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGU 2521 GGCUGGAACA aCUCC----| // LOCUS chl.P.litt 2540 bp RNA RNA 13-JAN-1989 DEFINITION Pylaiella littoralis. ACCESSION X14873 KEYWORDS No information. SOURCE Pylaiella littoralis. ORGANISM Pylaiella littoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X14873 BASE COUNT 437 a 291 c 413 g 364 t 1035 others ORIGIN 1 |--------- ---AAACUAU CGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- UACACAUGCA AGUCGUACGA A--------- -------agu (guuaaa--- 121 )acu------ ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUUUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGAAUAACA 301 G--------- ---------- ------UUG( GAAA)UGA-C UGCUAAUGCC GCAUAU---- 361 ---------- ---------- ---CGUAAUU AUGA(gacau a-)UCAUAAC UAUGAAA--- 421 ---------- ---------- gaa------- (-----gaaa -)-----|-- -uucGCCUAA 481 AGA-AAA-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUA A-G(GgUAAA GG)CU-A-CA 541 A|GGCGACGA UCAGUAGCUG |GUUU(GAGA )GGACGACCA GU|CACACUG G-A(CUGAGA 601 CACG)GUCCA GAC--UAC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCUG-CAAU 661 -GGGC-(-GA AA)---CUgA A-CAGA|GCA AUACCGCGUG AGGGAAGAAA GCC(---cac 721 a-g)GG-UU- --GUAAACCU C|UUUU-GUC AAGGAAGAAG Au-------( -------)-- 781 ------UCUG ACGUU-ACUU GACGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A Ag)gACGGGG |GAU-GCAAG UGUUAUCCGG AAUUACUGGG CGUAAAGCGU 901 UUGUAGGUG- ---|GUUUAG UAAG---|UC U-AUUGUUAA AGCUUGAAGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACUUC AA-------- AA---GUGUA AU-AGA-AAC UACU-AG--A -CUUGAG-GA 1081 UAGUA----- GGGGUAAAG| GGAAUUUCCA G-UGGAGCG( GUGAAA)UGC GUAGAGAUUG 1141 GAAGGACCAC CGAU---GGC (GAAG)GCAC UUUA-CUGGG CUA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UU CUGACACUAA 1261 G-AGACGAAA GCUAGGGUAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACGAUGAA U----ACUA| GAUG-UUGCG UGU------- ---------- (-aucgau-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|CC AUGCA-GUAU C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 UC|CGCCUGG GAACUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGACCCGC 1561 A--------C AAGCGUGGCA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UU-A U-GUAAA--U CUAUUU(GAA -A-)GAACA- GAG---UGCC 1681 ---------( CUCG-)---- -----GGAA- ---------- -----|UACA UAAAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUCUA-G-U UGCU------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuacaaa- )-------|A GGAAUCUUGA AG-ACUGCCG GU(UAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UACCCUGGGC UACACACGUG CUACAUUGGA --UAAGACAA AAAGUU---- 2161 GCGAAUUU(- ---------- ---------- ---------G UGA)AAAU-A AGCUAAUCUU 2221 UA-AACUUAU UCCUAAGUUC GGAUUGAAGG C(UGCAACUC )GCCUUCAUG AAGAUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAU)ACAGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG UCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUUAU 2401 ACCCGAAGUC GUU---UUCU U-AACC-(-- uuuuu----- --)-GG-AGA GAGGCGCCU- 2461 AAGG-UAAGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACG( GGAA)CGUGC 2521 GGCUGGAUCA CCUCCUUA-| // LOCUS chl.O.dani 2540 bp RNA RNA ~?~???? DEFINITION Ochromonas danica. ACCESSION X53183 KEYWORDS No information. SOURCE Ochromonas danica. ORGANISM Ochromonas danica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X53183 ID CHOD16S standard; RNA; ORG; 1300 BP. XX AC X53183; XX DT 24-MAY-1990 (molec_type corrected) DT 24-MAY-1990 (annotation) XX DE Ochromonas danica chrysoplast 16S rRNA (part.) XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Chloroplast Ochromonas danica OC Chloroplastidae; Chrysophyceae. XX RN [1] (bases 1-1300) RA Stackebrandt E.; RT ; RL Submitted (09-MAY-1990) on tape to the EMBL Data Library by: RL Stackebrandt E__ XX RN [2] (bases 1-1300) RA Witt D., Stackebrandt E.; RT "Disproving the hypothesis of a common ancestry for the Ochromonas RT danica chrysoplast and Heliobacterium chlorum"; RL Arch. Microbiol. 150:244-248(1988). XX CC *source:strain=SAG 933-7. XX FH Key From To Description FH FT RRNA <1 >1300 16S rRNA XX SQ Sequence 1300 BP; 370 A; 238 C; 341 G; 299 T; 52 other; BASE COUNT 370 a 238 c 341 g 299 t 1292 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn~nn( n-nn)nnnn| nnnnnnnnnn nnnnnnnnnn 61 nnnnnnnnn- nnnnnnnnnn nnnnnnnnGA A--------- -------aaa (ggaaa---- 121 )uuu------ ---------- ---|UU-AGU --GGCGAACG GGUGAGUAA- CGCGUGAGA- 181 AUUUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------A GAGAAUAACA 301 A--------- ---------- ------UUA( GAAA)UAG-U UGCUAAAACU CUAUAU---- 361 ---------- ---------- ----gcn--- ----(gaga- --)------- ugugaaa--- 421 ---------- ---------- aaa------- (-----gaaa -)-----|-- -uuuGCCUAA 481 AGA-GAA-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUA G-G(G-UAAA GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCGG-CNG UGAGGAAUU- UUCNG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA ACACCGCGUG AGGGAUGAAG GCU(---GGC 721 G--)AG-UN- --GUAAACCU C|UUUU-CUC AAGGAGGAAG N--------( -------)-- 781 ------UCUG ACGUU-ACUU GAGGAA-UAA GCAUNGGCU- AACC-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |NAU-GCAAG UGUUAUCCGG AAUUAUUGGG CGUAAAGCGU 901 CUGCAGGUG- ---|GAUAAU UAAG---|UC U-UUUGUAAA AGCUUCGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UNA)ACCUG GA-------- AU---CUGCA AA-AGA-AAC UAUU-UA--U -CUAGAG-AG 1081 UCAUA----- GAGGGAAAG| GGAAUUUCCA G-UGNAGCG( GUGAAA)UGC GUAGAGAUUG 1141 GAAAGAACAC CAAA---AGC (GAAA)GCAC UUUC-CUGGG UGN--N---- ---------- 1201 ---------- ---------- ---------- ---------- --------CN CUGACANUNA 1261 N-GGACGAAA GCUAGGGGAG CAAACAGG(A UU-AGAU-AC )CCUGGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGUA UAUU------ ---------- (-uuu----) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- ------A|AU AUACA-GNGU C-GU-NC--- --(UAAC)GC GU-NUAGUGU 1501 CC|CGCCUGG GAAGUNUGCU N(GCAA)GAC NGAAACUCAA AGGAAUUGAC GGNNNNNNGC 1561 A--------C AAGNNNNNNN NNNNNNNGUU UAAUUCG(NN NNAACA)CGA AGAACCUUAC 1621 CAGGACUUGA CA----UG-A A-GAGAA--A UUUUUU(GAA -A-)GAAAA- AUG---U-GC 1681 ---------( NUCG-)---- -----gc--- ---------- -----|cucu uACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U NAAGU)CCCG 1801 UAAC-GAGCG CAACCCUUG| UCUUUA-G-U U--------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --nguuu--- )-------|- ---UCCUAAA GAGACUGCCG AU(UAUAA-- 2041 -)-------- ---------- ------AUCG GAGGAAGGUG AGGAUGACGU N-NAGUCAUC 2101 AUGCCCCUUA AGUUCUGGGC UACACACGUG CUACAAUGGG --UAUGACAA AAAGUU---- 2161 GCUAAUUC(- ---------- ---------- ---------G UGA)GAAU-G UGCUAAUCUU 2221 -A-AAACAUA UCCUUAGUUC AGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC AGG(UC--AG CUAU)ACUGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGC AGCUNGUUAU 2401 ACCCGAAGNU AUn---nnnn n-nnnn-(-- --nnnn---- --)-nn-nnn nnnnnnnnn- 2461 nnnn-nnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.O.lute 2540 bp RNA RNA ~?~???? DEFINITION . ACCESSION M82860 KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS LOCUS OLICP16S 1537 bp ds-DNA ORG 19-NOV-1991 DEFINITION Chloroplast Olisthodiscus luteus 16S ribosomal RNA (16S rRNA) gene sequence. ACCESSION M82860 M34370 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Olisthodiscus luteus (chromosome Chloroplast Olisthodiscus luteus) DNA. ORGANISM Chloroplast Olisthodiscus luteus Eukaryota; Fungi; Chromophycota; Chrysophyceae; Chrysophycidae. REFERENCE 1 (bases 1 to 1537) AUTHORS Delaney,T.P. and Cattolico,R.A. TITLE Sequence of chloroplast 16S ribosomal RNA from Olisthodiscus luteus, as inferred from the gene sequence. Evolutionary implications of discordant rRNA and Rubisco small subunit-based phylogenies JOURNAL Nucleic Acids Res. 19, 6328-6328 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 9..1528 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 434 a 304 c 421 g 378 t ORIGIN BASE COUNT 431 a 304 c 419 g 374 t 1012 others ORIGIN 1 |----uuuua gga-uaUAAU UGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA G------agg uuuuuaaaga (uuuu----- 121 )ucuuaaaaa acug------ ---|AA-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------A AGGGACAACA 301 U--------- ---------- ------UUG( GAAA)CGA-A UGCUAAUACC UUAUAU---- 361 ---------- ---------- ----gccuau uauaacuugu auaauuaaua ggugaaa--- 421 ---------- ---------- ag-------- (-----uuuu -)-----|-- --cuGCCUAG 481 AGA-GGA-|G -CUCGCGG|- CUGAUUA-GC UA-GUUGGUG G-G(G-UAAU GG)CCUACCA 541 A|GGCGACGA UCAGUAACUG |AUUU(GAGA )GGAUGAUCA GU|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCUG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CAGA|GCA AUACCGCGUG AGGGAUGACA guc(--cuau 721 g--)ga-uu- --GUAAACCU C|UUUU-UUC AGGGAGGAAG U--------( -------)-- 781 ------UCUG ACGUU-ACCU GAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG UGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAA UGUG---|UC U-GUUGUUAA AUCUUAAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU AA-------- AC---CAGCA AU-GGA-AAC UAUUAUG--A -CUUGAG-UG 1081 UGGUA----- GAGGUAGAG| GGAAUUUCCA G-UGGAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GAAAGACCAC CAAU---GGC (GAAG)GCAC UCUA-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACGAUGGA U----ACUA| GAUG-UCGCA UG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUGCG-GUAU U-AUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UA-G U-ACGAA--G UUUUUU(GAA -A-)AAAAA- ACC----ACC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGUA CAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG UAACCCUUG| UUUUUA-G-U UGCC---u-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uucg---- )------a|G GAUAUUUAGA AAGACUGCCG AU(UAUAA-- 2041 -)-------- ---------- ------AUCG GAGGAAGGUA AGGACGACGU C-AAGUCAUC 2101 AUGCCCCUUA CACUCUGGGC UACACACGUG CUACAUUGGG --UAGAACAA UAAGUU---- 2161 GCUAAGUU(- ---------- ---------- ---------G CGA)AACC-A AGCGAAUCUU 2221 C--AAAUCUA CUCUAAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUA AAGAUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAC)ACAGC GGUGAAU-C- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGUCAC 2401 ACCCAAAGUC GUU---AUUC U-AACC-(-- --guuu---- --)-GG-AGG AAGGCGCCU- 2461 AAGG-UAGGA UUGGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACC( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUA-| // LOCUS chl.Crypto 2540 bp RNA RNA ~?~???? DEFINITION . ACCESSION X56806 KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS LOCUS CRYCP16SRN 1700 bp ss-rRNA RNA 30-OCT-1991 DEFINITION Cryptomonas sp. gene for 16S ribosomal RNA ACCESSION X56806 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Cryptomonas sp. DNA. ORGANISM Cryptomonas sp. Eukaryota; Fungi; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 1700) AUTHORS Douglas,S.E. and Turner,S.M. TITLE Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor JOURNAL J. Mol. Evol. 33, 267-273 (1991) STANDARD full automatic COMMENT *source: strain=F; *source: clone=pBSc15.5; From EMBL entry CS16SRN; dated 23-OCT-1991. FEATURES Location/Qualifiers -35_signal 68..73 /note="P1" -10_signal 88..93 /note="P1" -35_signal 119..124 /note="P2" -10_signal 139..144 /note="P2" rRNA 174..1666 /gene="16S rRNA" BASE COUNT 494 a 326 c 458 g 422 t ORIGIN BASE COUNT 414 a 311 c 432 g 336 t 1047 others ORIGIN 1 |--------- ---AAAUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGUACGA A--------- ------aguu (uuu------ 121 )aacu----- ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUAC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---aggAGGA ---------G GGGGAUAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACU CCAUAU---- 361 ---------- ---------- ----gcu--- ----(gaag- --)------- agugaaa--- 421 ---------- ---------- gg-------- (-----gaaa -)-----|-- --ccACCUAA 481 GGA-AGA-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUA G-G(G-UAAG GG)CCUACCA 541 A|GGCGACGA UCAGUAGCUG |GUUU(GAGA )GGACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GC AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG GCC(---ugu 721 g--)GG-UU- --GUAAACCU C|UUUU-CUC AAGGAAGAAG U--------( -------)-- 781 ------UCUG ACGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUUACUGGG CAUAAAGCGU 901 CUGUAGGUU- ---|GUUUAG UAAG---|UC U-GCUGUUAA AGACUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU AG-------- AA---AAGCA GU-GGA-AAC UGCU-AG--A -CUUGAG-UG 1081 UGGUA----- GAGGUAGAG| GGAAUUCCUA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUA 1141 GGAAGAACAC CAAU---GGC (GAAA)GCAC UUUA-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGACA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACUAUGGA U----ACUA| GAUG-UUGUA CG-------- ---------- (uauuaacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUACA-GUAU C-GUAGC--- --(UAAG)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-U C-ACAAA--U UUUCUU(GAA -A-)AAGAA- AAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|UGUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG UAACCCUUG| UUUUUA-G-U UGCCa-uca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( -uuaagu--- )-----ug|G GCACUUUAAA AAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGACGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACUCUGGGC UACACACGUA CUACAAUGGU --CGAGACAA AAAGUC---- 2161 GCAAACUU(- ---------- ---------- ---------G UGA)AAGU-A AGCUAAUCUU 2221 AU-AAACUCG AUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUAGUCAU 2401 ACCCAAAGUC GUU---ACCU U-AACC-(-- --auuc---- --)-GG-AGG GGGGCGCCU- 2461 AAGG-UAGGG UUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUA-| // LOCUS chl.P.sali 2540 bp RNA RNA ~?~???? DEFINITION Pyrenomonas salina. ACCESSION X55015 KEYWORDS No information. SOURCE Pyrenomonas salina. ORGANISM Pyrenomonas salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X55015 LOCUS PYACPALP16 1490 bp ss-mRNA ORG 25-MAR-1992 DEFINITION P.salina plastidal 16S ribosomal RNA ACCESSION X55015 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Pyrenomonas salina RNA. ORGANISM Chloroplast Pyrenomonas salina Eukaryota; Fungi; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 1490) AUTHORS Maerz,M., Wolters,J., Hofmann,C.J., Sitte,P. and Maier,U.G. TITLE Plastid DNA from pyrenomonas salina (cryptophyceae): Physical map, genes, and evolutionalry implications JOURNAL Curr. Genet. 21, 73-81 (1992) STANDARD full automatic COMMENT From EMBL entry PSALP16S; dated 29-JAN-1992. FEATURES Location/Qualifiers rRNA <1..>1490 /product="16S rRNA" BASE COUNT 403 a 323 c 435 g 329 t ORIGIN BASE COUNT 403 a 323 c 435 g 329 t 1050 others ORIGIN 1 |--------- ---auAUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUUGCACGA G--------- -------agu (uuuu----- 121 )aacu----- ---------- ---|CU-AGU --AGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GAGGAUAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACU CCAUAU---- 361 ---------- ---------- ----GCU--- ----(GAAA- --)------- AGUGAAA--- 421 ---------- ---------- GGA------- (-----uuua -)-----|-- -UCUGCCUAA 481 GGA-GGA-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(A-UAAA AG)CUCACCA 541 A|GGCGACGA UCAGUAGCUG |GUUU(GAGA )GGACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAA GCC(---ugu 721 g--)GG-UU- --GUAAACCU C|UUUU-CUC AAGGAAGAAG U--------( -------)-- 781 ------UCUG ACGGU-ACUU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUCACUGGG CAUAAAGCGU 901 CUGUAGGUU- ---|GUUUGG UAAG---|UC U-GCUGUUAA AUACUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU AG-------- GC---CAGCA GU-GGA-AAC UCUG-AG--C -AUUGAG-UA 1081 UGGUA----- GAGGUAGAG| GGAAUUCCUA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUA 1141 GGAAGAACAC CAAU---GGC (GAAA)ACGC UCUA-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUCA 1261 G-AGACGACA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-UUGCA CG-------- ---------- (uauuaacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUAU C-GUAG---- -C(UAAG)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-U C-ACGAA--U CUUUCC(GAA -A-)AGAAA- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG UAACCCUUG| UUUUUA-G-U UGCCA-Uca- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( -uuuagu--- )-----ug|G GCACUUUAAA GAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGACGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC UACACACGUA CUACAAUGGU --CGAGACAA AGAGCU---- 2161 GCAAGUCU(- ---------- ---------- ---------G CAA)AGCA-A AGCUAAUCUC 2221 AU-AAACUCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CAAU)ACGGC GGUGAAUC-- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUAGCCAC 2401 ACCCAAAGUC GUU---ACCU U-AACC-(-- --auuu---- --)-GG-AGG GGGGCGCCU- 2461 AAGG-UAGGG UUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.A.evec 2540 bp RNA RNA ~?~???? DEFINITION Angiopteris evecta. ACCESSION U24580 KEYWORDS No information. SOURCE Angiopteris evecta. ORGANISM Angiopteris evecta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24580 LOCUS AEU24580 1447 bp DNA PLN 02-AUG-1995 DEFINITION Angiopteris evecta chloroplast 16S rRNA gene, partial sequence. ACCESSION U24580 KEYWORDS . SOURCE Angiopteris evecta. ORGANISM Chloroplast Angiopteris evecta Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Marattiales; Marattiaceae; Angiopteris. REFERENCE 1 (bases 1 to 1447) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1447) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924732 FEATURES Location/Qualifiers source 1..1447 /organism="Angiopteris evecta" /chloroplast rRNA <1..>1447 /product="16S rRNA" BASE COUNT 364 a 345 c 468 g 270 t ORIGIN BASE COUNT 364 a 345 c 468 g 270 t 1093 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ---aagcauc (cuugu---- 121 )gauguuu-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCGAAAA-- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-UUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GUGAA--U CCUUUU(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uauugaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACUCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU U-AACC-(-- --gcga---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGnnnnnnnn nnnnnnnn-| // LOCUS chl.C.orbi 2540 bp RNA RNA ~?~???? DEFINITION Coleochaete orbicularis. ACCESSION U24579 KEYWORDS No information. SOURCE Coleochaete orbicularis. ORGANISM Coleochaete orbicularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24579 LOCUS COU24579 1617 bp DNA PLN 02-AUG-1995 DEFINITION Coleochaete orbicularis chloroplast 16S rRNA gene, partial sequence. ACCESSION U24579 KEYWORDS . SOURCE Coleochaete orbicularis. ORGANISM Chloroplast Coleochaete orbicularis Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 1617) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1617) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924735 FEATURES Location/Qualifiers source 1..1617 /organism="Coleochaete orbicularis" /chloroplast rRNA <1..1457 /product="16S rRNA" BASE COUNT 442 a 342 c 464 g 369 t ORIGIN BASE COUNT 385 a 325 c 441 g 306 t 1083 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGA G--------- -------agg (cuugu---- 121 )ccu------ ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGU- 181 ACUUAC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGU ---------G GGGAACAACA 301 G--------- ---------- ------UUG( GAAA)CGA-C UGCUAAUACC GCAUAU---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- AGA------- (-----ggaa -)-----|-- -UCUGCCUAG 481 GGA-GGG-|G -CUUGCGU|- CUGAUUAUGC UA-GUUGGUG A-G(G-UAAU GG)CUUACCA 541 A|GGCUACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGAAGAAA GCU(---uac 721 g--)GG-UU- --GUAAACUC C|UUUU-CUC AGAGAAGAAA A--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUU- ---|GUUUAU UAAG---|UC C-GCUGUUAA AUCCCACGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCAU GG-------- AC---AGGCG GC-GGA-AAC UAUU-AA--A -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAUAUCG 1141 GAAAGAACAC CCAA---GGC (GAAG)GCAC UUUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUG| AGCG-CUGCG CG-------- ---------- (uaucaacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-UUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GAAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-ACGAA--U CUUUUU(GAA -A-)GAAGA- GAG---UGCC 1681 ---------( UUUA-)---- -----GGAA- ---------- -----|CGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UAUCUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ucaauuuauu )-------|G GAACCCUAGA UAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGUU---- 2161 GUAAUCCU(- ---------- ---------- ---------G AGA)AGGC-U AACUAACCUC 2221 AU-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGUUGGCCAC 2401 GCCCGAAGUC GUU---ACUU U-AACC-(-- --guaau--- --)-GG-AGG AGGAUGCCG- 2461 AAGG-CGAAG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.B.bite 2540 bp RNA RNA ~?~???? DEFINITION Botrychium biternatum. ACCESSION U24581 KEYWORDS No information. SOURCE Botrychium biternatum. ORGANISM Botrychium biternatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24581 LOCUS BBU24581 1425 bp DNA PLN 02-AUG-1995 DEFINITION Botrychium biternatum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24581 KEYWORDS . SOURCE Botrychium biternatum. ORGANISM Chloroplast Botrychium biternatum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Ophioglossopsida; Ophioglossales; Ophioglossaceae; Botrychium. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924733 FEATURES Location/Qualifiers source 1..1425 /organism="Botrychium biternatum" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 353 a 353 c 465 g 254 t ORIGIN BASE COUNT 353 a 353 c 465 g 254 t 1115 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCG AGUCGGACGG A--------- ---aagcauc (ccagu---- 121 )gguguuu-- ---------- ---|UC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCGAAAA-- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UG-GUUGGUG A-G(G-CAAU GG)CUCACCA 541 A|GGCGACGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCU CAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---GGGCG GU-GGA-AAC UACU-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAGGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGCG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GUGAA--U CCUCUU(GAG -A-)GAGGG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCCCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uauucaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGA --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACCCG ACCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU C-AACC-(-- --gcaa---- --)-GG-AGG GGGGUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.C.glau 2540 bp RNA RNA ~?~???? DEFINITION Cibotium glaucum. ACCESSION U24582 KEYWORDS No information. SOURCE Cibotium glaucum. ORGANISM Cibotium glaucum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24582 LOCUS CGU24582 1425 bp DNA PLN 02-AUG-1995 DEFINITION Cibotium glaucum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24582 KEYWORDS . SOURCE Cibotium glaucum. ORGANISM Chloroplast Cibotium glaucum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Dicksoniaceae; Cibotium. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924734 FEATURES Location/Qualifiers source 1..1425 /organism="Cibotium glaucum" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 355 a 348 c 463 g 259 t ORIGIN BASE COUNT 355 a 348 c 463 g 259 t 1115 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCCU- AACACAUGCA AGUCGGACGG G--------- ---aagcauc (cucgu---- 121 )gguguuu-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAAG-- 421 ---------- ---------- GGA------- (-----ggga -)-----|-- -UCCGCCCGA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(G-CAGU GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUC- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGGG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUCCU UAAG---|UC C-GCUGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACU-GA--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUUCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 AAAAGAACAC CAAA---GGC (GAAG)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGCG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C U-GCGAA--U CCUCUU(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-C--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uacuaaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGCC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AG-AAACUCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAC)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---AGCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCU- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.D.maxi 2540 bp RNA RNA ~?~???? DEFINITION Doodia maxima. ACCESSION U24583 KEYWORDS No information. SOURCE Doodia maxima. ORGANISM Doodia maxima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24583 LOCUS DMU24583 1425 bp DNA PLN 02-AUG-1995 DEFINITION Doodia maxima chloroplast 16S rRNA gene, partial sequence. ACCESSION U24583 KEYWORDS . SOURCE Doodia maxima. ORGANISM Chloroplast Doodia maxima Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Blechnaceae; Doodia. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924736 FEATURES Location/Qualifiers source 1..1425 /organism="Doodia maxima" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 359 a 352 c 458 g 256 t ORIGIN BASE COUNT 359 a 352 c 458 g 256 t 1115 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCCU- AACACAUGCA AGUCGGACGG G--------- ---aagcauc (cucgu---- 121 )gguguuu-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACUUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAA---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAAG-- 421 ---------- ---------- GGA------- (-----ggga -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UG-GUUGGUG A-G(G-CAAC GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUC- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGCAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AGUG ACGGU-AUCC GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGGG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUCCU UAAG---|UC C-GCUGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GC-GGA-AAC UACU-AA--G -CUGGAG-UG 1081 CGGUA----- GGGGCAGGG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAA---GGC (GAAG)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AUCG-CUGCG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C U-GCGAA--U CCUCUU(GAA -A-)AAGAG- GAG---CGCC 1681 ---------( UUUG-)---- -----GGAA- ---------- -----|CGCA GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCCCG| UGUUUA-G-U UGCCA-C--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uaccaaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCUG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGUCCUGGGC GACACACGUG CUACAAUGGC --CGAAACAA AGAGCC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AG-AAACUCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---GGCU U-AACC-(-- --gcaa---- --)-GG-AGA GAGAUGCCU- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.E.trif 2540 bp RNA RNA ~?~???? DEFINITION Ephedra trifurca. ACCESSION No information KEYWORDS U24584 SOURCE Ephedra trifurca. ORGANISM Ephedra trifurca. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24584 LOCUS ETU24584 1428 bp DNA PLN 02-AUG-1995 DEFINITION Ephedra trifurca chloroplast 16S rRNA gene, partial sequence. ACCESSION U24584 KEYWORDS . SOURCE Ephedra trifurca. ORGANISM Chloroplast Ephedra trifurca Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Pinophyta; Gnetopsida; Ephedrales; Ephedraceae; Ephedra. REFERENCE 1 (bases 1 to 1428) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1428) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924738 FEATURES Location/Qualifiers source 1..1428 /organism="Ephedra trifurca" /chloroplast rRNA <1..>1428 /product="16S rRNA" BASE COUNT 371 a 322 c 446 g 289 t ORIGIN BASE COUNT 371 a 322 c 446 g 289 t 1112 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG G--------- -------aag (uggug---- 121 )uuu------ ---------- ---|CC-GGU --GGCGGACG GGUGAGUAA- UGCGUGAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C AGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCUGCCCAA 481 GGA-GGG-|G -CUCACGU|- CUGAUUA-GU UA-GUUGGUG A-G(G-CAAU GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGCAGAAG GCC(---uac 721 g--)GG-UU- --GUGAACUU C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCC- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AUUUAUUGGG CGUAAAGUGU 901 CUUUAGGUG- ---|GCUUUU CAAG---|UC C-UCCGUUAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG UU-GGA-AAC UACA-AA--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GCUGAGAUCG 1141 GAAAGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGA CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACAAUGGA U----ACUA| AGUG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGU--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUAGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGAUUGA CA----UG-C C-GUGAA--U CCUCCU(GAA -A-)AGGGG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CACG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAG)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUU| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cguguaguuu )-------|G GAACCCUAAA CAGACUGCUG GC(GAUGA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGAGGU C-AAGUCAUC 2101 AUGCCCCUUA UACCCUGGGC CACACACAUG CUACAAUGGC --CGGGAUAA AGGGUC---- 2161 GCGACCUC(- ---------- ---------- ---------G UGA)GGGC-A AGCUAAUCUC 2221 AA-AAACCCG GUCUCAGUUC GAAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCAGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CUCGGG CCUUGUACAC ACCGCCCGUC ACACUAUAGG AGUUGGCCAU 2401 GUUUGAAGUC UUU---ACCU U-AACC-(-- --guaa---- --)-GG-AGG GGGAUGACA- 2461 AAGG-CAGGG UUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.I.mela 2540 bp RNA RNA ~?~???? DEFINITION Isoetes melanopoda. ACCESSION U24585 KEYWORDS No information. SOURCE Isoetes melanopoda. ORGANISM Isoetes melanopoda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24585 LOCUS IMU24585 1452 bp DNA PLN 02-AUG-1995 DEFINITION Isoetes melanopoda chloroplast 16S rRNA gene, partial sequence. ACCESSION U24585 KEYWORDS . SOURCE Isoetes melanopoda. ORGANISM Chloroplast Isoetes melanopoda Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Lycopodiophyta; Isoetopsida; Isoetales; Isoetaceae; Isoetes. REFERENCE 1 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924739 FEATURES Location/Qualifiers source 1..1452 /organism="Isoetes melanopoda" /chloroplast rRNA <1..>1452 /product="16S rRNA" BASE COUNT 363 a 362 c 474 g 253 t ORIGIN BASE COUNT 363 a 362 c 474 g 253 t 1088 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGg g--------- ---aagcauc (cacagu--- 121 )gguguuu-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGG ---------G GGGGACAACG 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CUAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCGAAA--- 421 ---------- ---------- GGA------- (-----ggaa a)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UG-GUUGGUG A-G(G-CAAC GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACC-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCG CAAG---|UC C-GCCGUCAA AUCUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GGAAGAACAC CAACAACGGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC C-GCAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAG -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-C--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cauugaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCAACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AG-AAACCCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCACG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAAUC GUU---ACCU U-AACC-(-- --gcaa---- --)-GG-GGA GGAAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGnnnnnnnn nnnnnnnn-| // LOCUS chl.J.virg 2540 bp RNA RNA ~?~???? DEFINITION Juniperus virginiana. ACCESSION U24586 KEYWORDS No information. SOURCE Juniperus virginiana. ORGANISM Juniperus virginiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24586 LOCUS JVU24586 1454 bp DNA PLN 02-AUG-1995 DEFINITION Juniperus virginiana chloroplast 16S rRNA gene, partial sequence. ACCESSION U24586 KEYWORDS . SOURCE red cedar. ORGANISM Chloroplast Juniperus virginiana Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Pinophyta; Coniferopsida; Coniferales; Cupressaceae; Juniperus. REFERENCE 1 (bases 1 to 1454) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1454) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924740 FEATURES Location/Qualifiers source 1..1454 /organism="Juniperus virginiana" /chloroplast rRNA <1..>1454 /product="16S rRNA" BASE COUNT 387 a 327 c 446 g 294 t ORIGIN BASE COUNT 387 a 327 c 446 g 294 t 1086 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG G--------- -------aag (uggug---- 121 )uuu------ ---------- ---|CC-AGU --GGCGAACG GGUGAGUAA- UGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAGaauu 361 uaguaccucu acgaggugag guagGCU--- ----(GAGG- --)------- AGCAAAAG-- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUCACGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU GG)CUUACCA 541 A|GGCUCCGA UCAGUAGUUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGAAGAAG GCU(---cac 721 g--)GG-UC- --GUAAACUU C|UUUU-CUC GGAGAAGAAU A--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)AACAGAG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG CGUAAAGUGU 901 CUGUAGGUG- ---|GCUUUU CAAG---|UC C-GUCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UAUU-AA--G -CUAGAG-UA 1081 CGGUA----- GAGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUUGAGAUCG 1141 GGAGGAACAC CAAG---GGC (GAAA)GCAC UCUG-CUGGG CCG--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUCA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUAUA-GUAC U-GCAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGAUUGA CA----UG-C C-GCGAA--U CCUUUU(GAA -A-)AAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-UUCGU|G CC(GCAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ---aaaguuu )-------|G GAACUCUGAA CAGACUAUCG GU(GUUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGAUGU C-AAGUCAUC 2101 AUGCCCCUUA UACCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGUU---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGU-A AGCUAACCUC 2221 AA-AAACCUG GCCUCAAUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUAGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CUCGGG CCUUGUACAC ACCGCCCGUC ACACUAGGGA AGUGUGCCAU 2401 GCUCGAAGUC AUU---AUCU U-AACC-(-- --gcaa---- --)-GG-AGG GAGAUGCCC- 2461 AAGG-CACGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.L.japo 2540 bp RNA RNA ~?~???? DEFINITION Lygodium japonicum. ACCESSION U24588 KEYWORDS No information. SOURCE Lygodium japonicum. ORGANISM Lygodium japonicum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24588 LOCUS LJU24588 1437 bp DNA PLN 02-AUG-1995 DEFINITION Lygodium japonicum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24588 KEYWORDS . SOURCE Lygodium japonicum. ORGANISM Chloroplast Lygodium japonicum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Schizaeaceae; Lygodium. REFERENCE 1 (bases 1 to 1437) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1437) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924742 FEATURES Location/Qualifiers source 1..1437 /organism="Lygodium japonicum" /chloroplast rRNA <1..>1437 /product="16S rRNA" BASE COUNT 361 a 347 c 461 g 268 t ORIGIN BASE COUNT 361 a 347 c 461 g 268 t 1103 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCCU- AACACAUGCA AGUCGGACGG G--------- ---gagcacc (cucgu---- 121 )gguguuu-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCC U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAA---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAAG-- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCGA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(G-CAAU GG)CUCACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUC- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAAGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUCUU UAAG---|UC C-CCUGUCAA AUACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- AU---AGGCG GU-GGA-AAC UACU-GA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAGGAACAC CAAA---GGC (GAAC)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-UUGUA CG-------- ---------- (uauugacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UA-C U-GCGAA--U CCUUUU(GAA -A-)AAAAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGUG GAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uacucaaauu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCUCUGGGC GACACACGUG CUACAAUGGC --CGGGACAG AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G UGA)GGGC-A AGCUAACCUC 2221 AG-AAACUCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CAC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU C-AACC-(-- --gcga---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU UGCCGUACU( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.O.enge 2540 bp RNA RNA ~?~???? DEFINITION Ophioglossum engelmannii. ACCESSION U24589 KEYWORDS No information. SOURCE Ophioglossum engelmannii. ORGANISM Ophioglossum engelmannii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24589 LOCUS OEU24589 1425 bp DNA PLN 02-AUG-1995 DEFINITION Ophioglossum engelmannii chloroplast 16S rRNA gene, partial sequence. ACCESSION U24589 KEYWORDS . SOURCE Engelmann's adder's-tongue. ORGANISM Chloroplast Ophioglossum engelmannii Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Ophioglossopsida; Ophioglossales; Ophioglossaceae; Ophioglossum. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924744 FEATURES Location/Qualifiers source 1..1425 /organism="Ophioglossum engelmannii" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 352 a 353 c 464 g 256 t ORIGIN BASE COUNT 352 a 353 c 464 g 256 t 1115 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGA A--------- ---aagcauc (ccagu---- 121 )gguguuu-- ---------- ---|UC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGG ---------G GGGCCCAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCGAAAA-- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UG-GUUGGUG A-G(G-CAAU GG)CUCACCA 541 A|GGCGACGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU CAAG---|UC U-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---GGGCG GU-GGA-AAC UACU-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAGGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GUGAA--U CCUCUU(GAA -A-)GAGGG- GAG---UGCC 1681 ---------( CUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCCCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uauucaguuu )-------|G GAACCCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGA --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-G AGCUAACCUC 2221 AA-AAACCCG ACCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---GCCC C-AACC-(-- --gcaa---- --)-GG-AGG GGGGUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.S.apod 2540 bp RNA RNA ~?~???? DEFINITION Selaginella apoda. ACCESSION U24591 KEYWORDS No information. SOURCE Selaginella apoda. ORGANISM Selaginella apoda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24591 LOCUS SAU24591 1446 bp DNA PLN 02-AUG-1995 DEFINITION Selaginella apoda chloroplast 16S rRNA gene, partial sequence. ACCESSION U24591 KEYWORDS . SOURCE meadow spike moss. ORGANISM Chloroplast Selaginella apoda Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; Selaginella. REFERENCE 1 (bases 1 to 1446) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1446) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924746 FEATURES Location/Qualifiers source 1..1446 /organism="Selaginella apoda" /chloroplast rRNA <1..>1446 /product="16S rRNA" BASE COUNT 342 a 381 c 483 g 240 t ORIGIN BASE COUNT 342 a 381 c 483 g 240 t 1094 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCCU- AACACAUGCA AGUCGUACGG G--------- ---gagcacc (cuacccgu- 121 )ggugcuc-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAGGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGGCAACA 301 G--------- ---------- ------CUG( GGAA)CGG-C UGCUGAUACC CCAUAGua-- 361 ---------- ---------- ---aGCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----ggaa a)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CCGAUUA-GC CU-GUUGGCG G-G(G-UAAU GG)CUCACCA 541 A|AGCGACGA UCGGUAGCUG |GUCC(GAGA )GGACGAUCA GC|CACACCG GGA(CUGAGA 601 CACG)GCCCG GAC--UCC(U A-CG)GG-G- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCC-G A-CGGA|GCA AUGCCGCGUG GGGGUAGAAG GCC(---ugc 721 g--)GG-UC- --GUAAACCG C|UUUU-ACC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCC GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUCGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUCCU AAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- AA---GGGCG GU-GGA-AAC UACU-GA--G -CCUGGG-UA 1081 CGGUA----- GGGGCAGGG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAGGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUGGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCCA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CCGCG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GCGCG-GUGC U-GUAGC--- --(UAAC)GC GU-CAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GUGAA--U CCUCUU(GAG -A-)GAGAG- GGG---UGCC 1681 c--------( uagcc)---- ----gGGAA- ---------- -----|CACG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG CGUUGGG(-U UGAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cauugggcuu )-------|G GAACCCUAAA CAUACUGCCG GC(GAUGA-- 2041 -)-------- ---------- ------GCCG GAGGAGGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUCA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCAACCCC(- ---------- ---------- ---------G CGA)GGGC-A GGCCAACCCC 2221 GA-AAACCCG GCCUUAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUC---GCCU C-AACC-(-- --ucag---- --)-GG-AAG GGAACGCCC- 2461 AAGG-CAGGG CUCGCGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.P.nudu 2540 bp RNA RNA ~?~???? DEFINITION Psilotum nudum. ACCESSION U24590 KEYWORDS No information. SOURCE Psilotum nudum. ORGANISM Psilotum nudum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24590 LOCUS PNU24590 1452 bp DNA PLN 02-AUG-1995 DEFINITION Psilotum nudum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24590 KEYWORDS . SOURCE Psilotum nudum. ORGANISM Chloroplast Psilotum nudum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Psilotophyta; Psilotopsida; Psilotales; Psilotaceae; Psilotum. REFERENCE 1 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924745 FEATURES Location/Qualifiers source 1..1452 /organism="Psilotum nudum" /chloroplast rRNA <1..>1452 /product="16S rRNA" BASE COUNT 375 a 349 c 460 g 268 t ORIGIN BASE COUNT 375 a 349 c 460 g 268 t 1088 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG A--------- ---aagcauc (ccagu---- 121 )ggugcuu-- ---------- ---|UC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCCGC-CCU G--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGAUAACC 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAAA-- 421 ---------- ---------- GGA------- (---ggaaua a)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU GG)CUCACCA 541 A|GGCGACGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---uac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCU CAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---GGGCG GU-GGA-AAC UACU-AA--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-UUGUG CG-------- ---------- (uauugacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-UUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUCCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA---ggu-U U-GUGAA--U CUUCUU(CAA -A-)AGGAA- GAG---UUCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCA GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUAGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uacugaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGAUGU C-AAGUCGGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGA --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACCCG ACCCCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CUCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGACCAU 2401 GCCCGAAGUC AUU---ACCC U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGnnnnnnnn nnnnnnnn-| // LOCUS chl.S.palu 2540 bp RNA RNA ~?~???? DEFINITION Sphagnum palustre. ACCESSION U24592 KEYWORDS No information. SOURCE Sphagnum palustre. ORGANISM Sphagnum palustre. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24592 LOCUS SPU24592 1435 bp DNA PLN 02-AUG-1995 DEFINITION Sphagnum palustre chloroplast 16S rRNA gene, partial sequence. ACCESSION U24592 KEYWORDS . SOURCE Sphagnum palustre. ORGANISM Chloroplast Sphagnum palustre Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Bryophyta; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum. REFERENCE 1 (bases 1 to 1435) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1435) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924748 FEATURES Location/Qualifiers source 1..1435 /organism="Sphagnum palustre" /chloroplast rRNA <1..>1435 /product="16S rRNA" BASE COUNT 364 a 350 c 458 g 263 t ORIGIN BASE COUNT 364 a 350 c 458 g 263 t 1105 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ---aagcauc (cuagu---- 121 )gguguuu-- ---------- ---|UC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-GA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CUUCUU(GAA -A-)GAGAA- GAG---UGCC 1681 ---------( CUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cauuuaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACCCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAACC-- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCC U-AACC-(-- --guaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.E.arve 2540 bp RNA RNA ~?~???? DEFINITION Equisetum arvense. ACCESSION U24593 KEYWORDS No information. SOURCE Equisetum arvense. ORGANISM Equisetum arvense. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24593 LOCUS EAU24593 1443 bp DNA PLN 02-AUG-1995 DEFINITION Equisetum arvense chloroplast 16S rRNA gene, partial sequence. ACCESSION U24593 KEYWORDS . SOURCE field horsetail. ORGANISM Chloroplast Equisetum arvense Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Equisetophyta; Sphenopsida; Equisetales; Equisetaceae; Equisetum. REFERENCE 1 (bases 1 to 1443) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1443) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924737 FEATURES Location/Qualifiers source 1..1443 /organism="Equisetum arvense" /chloroplast rRNA <1..>1443 /product="16S rRNA" BASE COUNT 362 a 348 c 466 g 267 t ORIGIN BASE COUNT 362 a 348 c 466 g 267 t 1097 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGG G--------- ----aagcau (cuu------ 121 )auguuu--- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CCG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GGGG- --)------- AGCAAAA--- 421 ---------- ---------- GGGA------ (-----ggaa -)-----|-- UCCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(G-CAAU GG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGGG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---GGGCG GU-GGG-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-U C-GCGAA--U UCUUUC(GAA -A-)GAUAG- AAG---UGCC 1681 ---------( UACG-)---- -----GGAG- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uauugaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGU --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)-GGC-A AGCUAACCUC 2221 GA-AAACCCG ACCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCC U-AACC-(-- --gcaa---- --)-GG-GGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGnnnnnnnn nnnnnnnn-| // LOCUS chl.O.cinn 2540 bp RNA RNA ~?~???? DEFINITION Osmunda cinnamomea. ACCESSION U24594 KEYWORDS No information. SOURCE Osmunda cinnamomea. ORGANISM Osmunda cinnamomea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24594 LOCUS OCU24594 1425 bp DNA PLN 02-AUG-1995 DEFINITION Osmunda cinnamomea var. fokiensis chloroplast 16S rRNA gene, partial sequence. ACCESSION U24594 KEYWORDS . SOURCE Osmunda cinnamomea var. fokiensis. ORGANISM Chloroplast Osmunda cinnamomea var. fokiensis Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Osmundaceae; Osmunda. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924743 FEATURES Location/Qualifiers source 1..1425 /organism="Osmunda cinnamomea var. fokiensis" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 354 a 347 c 463 g 261 t ORIGIN BASE COUNT 354 a 347 c 463 g 261 t 1115 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ---aagcauc (cucgu---- 121 )ggugcuu-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAAG-- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUC- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGGG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUCCU UAAG---|UC U-GCUGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UAUC-GA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAU---GGC (GAAG)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUAA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUUUU(GAG -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uauugaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG GGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACCCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU U-AACC-(-- --gcag---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.T.obla 2540 bp RNA RNA ~?~???? DEFINITION Tmesipteris oblanceolata. ACCESSION U24595 KEYWORDS No information. SOURCE Tmesipteris oblanceolata. ORGANISM Tmesipteris oblanceolata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24595 LOCUS TOU24595 1436 bp DNA PLN 02-AUG-1995 DEFINITION Tmesipteris oblanceolata chloroplast 16S rRNA gene, partial sequence. ACCESSION U24595 KEYWORDS . SOURCE Tmesipteris oblanceolata. ORGANISM Chloroplast Tmesipteris oblanceolata Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Psilotophyta; Psilotopsida; Psilotales; Psilotaceae; Tmesipteris. REFERENCE 1 (bases 1 to 1436) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1436) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924749 FEATURES Location/Qualifiers source 1..1436 /organism="Tmesipteris oblanceolata" /chloroplast rRNA <1..>1436 /product="16S rRNA" BASE COUNT 376 a 345 c 448 g 267 t ORIGIN BASE COUNT 376 a 345 c 448 g 267 t 1104 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnnnnnnn nnnnnCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG A--------- --aagcaucc (cagu----- 121 )gggaugcuu ---------- ---|UC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCCGC-CCU G--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGAUAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAAA-- 421 ---------- ---------- GGAU------ (----gcaua -)-----|-- AUCCGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU GG)CUCACCA 541 A|GGCGACGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGAAGAAG GCC(---uac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCU CAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---GGGCG AU-GGA-AAC UACU-AA--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-UUGUG CG-------- ---------- (uauugacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-UUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUCCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA--gguu-U U-GUGAA--U CUUCUU(CAA -A-)AGGAA- GAG---UUUC 1681 u--------( uucaa)c--- ----gGGAA- ---------- -----|CACA GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUAGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( uacugaguuu )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGAUGU C-AAGUCGGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGA --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACCCG ACCCCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CUCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGACCAU 2401 GCCCGAAGUC GUU---ACCC U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAnnn nnnnnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.L.digi 2540 bp RNA RNA ~?~???? DEFINITION Lycopodium digitatum. ACCESSION U24587 KEYWORDS No information. SOURCE Lycopodium digitatum. ORGANISM Lycopodium digitatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24587 LOCUS LDU24587 1456 bp DNA PLN 02-AUG-1995 DEFINITION Lycopodium digitatum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24587 KEYWORDS . SOURCE Lycopodium digitatum. ORGANISM Chloroplast Lycopodium digitatum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Lycopodiophyta; Lycopodiopsida; Lycopodiales; Lycopodiaceae; Lycopodium. REFERENCE 1 (bases 1 to 1456) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1456) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924741 FEATURES Location/Qualifiers source 1..1456 /organism="Lycopodium digitatum" /chloroplast rRNA <1..>1456 /product="16S rRNA" BASE COUNT 366 a 355 c 467 g 268 t ORIGIN BASE COUNT 366 a 355 c 467 g 268 t 1084 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ---aagcauc (ucagu---- 121 )gguguuu-- ---------- ---|UC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CUAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----ggaa a)-----|-- -UCUGCCCAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU GG)CUCACCG 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCUG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CAGA|GCA AUGCCGCGUG GAGGUAGAAG GUC(---cac 721 g--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAAA C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---GGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAG)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-GGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACCA| AGCG-CUGCG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUUCA-GUGC U-GUAGC--- --(UAAC)GC GU-UGAGUAU 1501 CC|CGCCUGG GGAGUACGUU U(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GUGAA--U CCUCUU(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUCA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cacuagguuu )-------|G GAACUCUGAA UAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCAACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACCCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUC------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU C-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.S.maxi 2540 bp RNA RNA ~?~???? DEFINITION Spirogyra maxima. ACCESSION U24596 KEYWORDS No information. SOURCE Spirogyra maxima. ORGANISM Spirogyra maxima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U24596 LOCUS SMU24596 1657 bp DNA PLN 02-AUG-1995 DEFINITION Spirogyra maxima chloroplast 16S rRNA gene, complete sequence. ACCESSION U24596 KEYWORDS . SOURCE Spirogyra maxima. ORGANISM Chloroplast Spirogyra maxima Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Zygnematales; Zygnemataceae; Spirogyra. REFERENCE 1 (bases 1 to 1657) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1657) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924747 FEATURES Location/Qualifiers source 1..1657 /organism="Spirogyra maxima" /chloroplast rRNA 97..1585 /product="16S rRNA" BASE COUNT 460 a 357 c 481 g 359 t ORIGIN BASE COUNT 396 a 339 c 454 g 300 t 1051 others ORIGIN 1 |--------- ----UCUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCCU- AACACAUGCA AGUCGUACGA A--------- ----gguguu (gcaa----- 121 )gacacc--- ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGC ---------G GGGGAUAACC 301 A--------- ---------- ------UUG( GAAA)CGA-U GGCUAAUACC CCAUAU---- 361 ---------- ---------- ----ACU--- ----(GAAG- --)------- AGUCAAA--- 421 ---------- ---------- GGA------- (-----ggaa -)-----|-- -UCCACCUAG 481 AGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAU GG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGAAGAAA GCC(---cau 721 g--)GG-UU- --GUAAACUC C|UUUU-GUC AGAGAAGAAA U--------( -------)-- 781 ------AAUG ACGGU-AUCU GAAGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUU- ---|GCUUUU UAAG---|UC C-AUUGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- AC---AGGCA AU-GGA-GAC UACU-AG--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGGG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAUAUCG 1141 GAAAGAACAC CAAC---GGC (GAAG)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGUG CG-------- ---------- (uauuaacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGU U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGAAUUGA CA----UG-C C-ACGUA--U CUGCCU(GAA -A-)GGGUA- GAG---UUCC 1681 ---------( uuuua)---- -----GGAA- ---------- -----|CGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ---acaa--- )-------|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CAUCCUGGGC GACACACGUG CUACAAUGGU --UGAGACAA AGGGAU---- 2161 GCCACCCC(- ---------- ---------- ---------G UGA)GGGC-A AGCAAAUCUC 2221 AA-AAACUCA AUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGGCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGUCAU 2401 GCCCGAAGUC GUU---CUCC U-AACC-(-- --guga---- --)-GG-AGG GAAAUUCCG- 2461 AAGG-CAGGA CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAACA CCUCCUUU-| // LOCUS chl.C.vulg 2540 bp RNA RNA ~?~???? DEFINITION Chlorella vulgaris. ACCESSION X16579 KEYWORDS No information. SOURCE Chlorella vulgaris. ORGANISM Chlorella vulgaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X16579 X16579 Nucleic Acids Research 17.9487 1989 BASE COUNT 395 a 331 c 457 g 308 t 1049 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGC A--------- ugcaauuugg (cuug----- 121 )ccagauugc ga-------- ---|UG-AGU --GGCGGACG GGUGAGUAA- CACGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------G AGGGAUAACC 301 A--------- ---------- ------UUG( GAAA)CGA-U GGCUAAUACC UCGUAU---- 361 ---------- ---------- ---uGCU--- ----(GAGA- --)------- AGUGAAA--- 421 ---------- ---------- gau------- (-----gaaa -)-----|-- -aucGCCAAU 481 AGA-UGG-|G -CUUGCGG|- CUGAUUA-GC UU-GUUGGUG A-G(G-UAAU GG)CUUACCA 541 A|GGCAAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA CA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGAUGAAG GCC(---UAU 721 G--)GG-UU- --GUAAACUU C|UUUU-CUC AGAGAAGAAG C--------( -------)-- 781 ------aUUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUAA AAAG---|UC U-CCUGUCAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GC---CGGCA GG-AGA-AAC UCUU-AG--G -CUAGAG-UU 1081 UGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GGAGGAACAC CAAA---GGC (GAAA)GCAC UCUG-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG CAAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUC-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGGG UAG------- ---------- (guuaaa--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|UC ACUCA-GUAU C-GUAGC--- --(UAAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGACUUGA CA----UG-C C-ACUU---U UUCCCU(GAA -A-)GGGGA- AG----u--- 1681 ---------( ucca-)---- --------g- ---------- -----|AGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(UUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUGA-A-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --aguaau-- )-------|G GGAAAUUCAA AAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGUCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGAU---- 2161 GCAAACCC(- ---------- ---------- ---------G CGA)GGGC-U AGCCAACCUC 2221 AA-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC AGG(UC--AG CCAU)ACUGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCUAU 2401 GCCCAAAGUC GUU---ACCC C-AACCu(-- --uuu----- --)aGG-AGG GGGACGCCU- 2461 AAGG-CAGAG CUAGUGACUA GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGW 2521 GGYUGGAUCA CCUCCUUG-| // LOCUS chl.C.vulg 2540 bp RNA RNA ~?~???? DEFINITION Chlorella vulgaris. ACCESSION D11347 KEYWORDS No information. SOURCE Chlorella vulgaris. ORGANISM Chlorella vulgaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: D11347 LOCUS CHLCPV16S 1450 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella vulgaris chloroplast 16S ribosomal RNA. ACCESSION D11347 KEYWORDS Chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella vulgaris (strain Chlorella vulgaris) rRNA. ORGANISM Chlorella vulgaris Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1450) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534864 FEATURES Location/Qualifiers source 1..1450 /organism="Chlorella vulgaris" /strain="Chlorella vulgaris" /sequenced_mol="rRNA" BASE COUNT 389 a 320 c 444 g 297 t ORIGIN BASE COUNT 389 a 320 c 444 g 297 t 1090 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGC A--------- ugcaauuugg (cuug----- 121 )ccagauugc ga-------- ---|UG-AGU --GGCGCACG GGUGAGUAA- CACGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------G AGGGAUAACC 301 A--------- ---------- ------UUG( GAAA)CGA-U GGCUAAUACC UCGUAU---- 361 ---------- ---------- ---uGCU--- ----(GAGA- --)------- AGUGAAA--- 421 ---------- ---------- GAU------- (-----gaaa -)-----|-- -AUCGCCAAU 481 AGA-UGG-|G -CUUGCGG|- CUGAUUA-GC UU-GUUGGUG A-G(G-UAAU GG)CUUACCA 541 A|GGCAAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA CA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGAUGAAG GCC(---uau 721 g--)GG-UU- --GUAAACUU C|UUUU-CUC AGAGAAGAAG C--------( -------)-- 781 ------AUUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUAA AAAG---|UC U-CCUGUCAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GC---CGGCA GG-AGA-AAC UUUU-AG--G -CUAGAG-UU 1081 UGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GGAGGAACAC CAAA---GGC (GAAA)GCAC UCUG-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG CAAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUC-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGGG Ua-------- ---------- (gguuaaau) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C ACUCA-GUAU C-GUAGC--- --(UAAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGACUUGA CA----UG-C C-ACUU---U UUCCCU(GAA -A-)GGGGA- AGU------- 1681 ---------( ucgag)---- ---------- ---------- -----|AGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(UUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUGA-A-U UGCCA-G--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uaaug--- )-------|G GAAA-UUCAA AAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGUCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGAU---- 2161 GCAAACCC(- ---------- ---------- ---------G CGA)GGGC-U AGCCAACCUC 2221 AA-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC AGG(UC--AG CCAU)ACUGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCUAU 2401 GCCCAAAGUC GUU---ACCC C-AACC-(-- -uuuua---- --)-GG-AGG GGGACGCCU- 2461 AAGG-CAGAG CUAGUGACUA GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.C.prot 2540 bp RNA RNA ~?~???? DEFINITION Chlorella protothecoide. ACCESSION X65688 KEYWORDS No information. SOURCE Chlorella protothecoide. ORGANISM Chlorella protothecoide. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X65688 ID CPSSRRNA standard; RNA; ORG; 1541 BP. XX AC X65688; XX DT 25-MAY-1992 (Rel. 31, Created) DT 04-JUN-1992 (Rel. 32, Last updated, Version 7) XX DE C.protothecoides plastid DNA for small subunit (16S-like) ribosomal DE RNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella protothecoides OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX OG Plastid XX RN [1] RP 1-1541 RA Huss V.A.R.; RT ; RL Submitted (24-APR-1992) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanik und Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr 5, W 8520 Erlangen, FRG XX RN [2] RP 1-1541 RA Huss V.A.R., Hatzack F., Fox G.E.; RT ; RL Unpublished. XX CC *source: strain=211-7a (Type strain); XX FH Key Location/Qualifiers FH FT misc_feature 1..30 FT /note="PCR amplification primer" FT rRNA 1..1541 FT /product="small subunit rRNA" FT misc_feature 1518..1541 FT /note="PCR amplification primer" XX SQ Sequence 1541 BP; 438 A; 313 C; 433 G; 353 T; 4 other; BASE COUNT 438 a 313 c 433 g 353 t 1003 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU AAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUUGUACGA A-------gg uauuuuuucu (cucg----- 121 )ggaaaagau auAC------ ---|UG-AGU --GGCGGACG GGUGAGUAA- CACGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------A AGGGACAACU 301 A--------- ---------- ------UUG( GAAA)CGA-U AGCUAAUACC UUAUAU---- 361 ---------- ---------- ---uGCU--- ----(GAGA- --)------- AGUGAAA--- 421 ---------- ---------- AAU------- (-----gaaa -)-----|-- -AUUGCCAAG 481 AGA-UGG-|G -CUUGCGC|- CUGAUUA-GC UA-GUUGGUG U-G(G-UAAA GG)CAUACCA 541 A|GGCAAUGA UCAGUAGCUG |UUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGAUGAAG GCC(---UAU 721 G--)GG-UU- --GUAAACUU C|UUUU-CUC AGAAAAGAAU U--------( -------)-- 781 -------AUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUU- ---|GUUUAA AAAG---|UA U-UCUGUCAA AGAUUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU AG-------- AU---AGGCA GA-AUA-AAC UUUU-AA--G -CUAGAG-UU 1081 UGGUA----- GAGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAUAUCG 1141 GGAGGAACAC CAAA---GGC (GAAG)GCAC UCUG-CUGGG CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUAACACUGA 1261 G-AGACGAAA GCGAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUC-GCCGU 1321 AAACAAUGGA A----ACUA| GGUG-UUGGG UG-------- ---------u (auaaaaau) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUUCA-GUAU C-GUAGC--- --(UAAC)GC AU-UAAGUUU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGAACCCGC 1561 A--------C AAUUGGUGGG GUACGUGGUU UAAUUCG(AU GCAACG)CGA RGAACCUUAC 1621 CAGGAUUUGA CA----UG-U C-ACUug-uu ucuucaacuu acuacuuaau ugg---uuuu 1681 aa----gcg( gaaa-)ca-- ---uuaaaa- ---------- -----|AGUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(UUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUU| UUUUGA-A-U UGCUU-G--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ------gcgc uuuuaaacgc 1981 uuuuagaga( ---------- )-------|G GAAA-UUCAA AAUACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UAUCCUGGGC GACACACGUG CUACAAUGGC --CGGAACAA AGAGAA---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGAC-A AGCUAACCUC 2221 AA-AAAUCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUUGGAAU 2281 CAAU------ AGUAAU-CGC AGG(UC--AG CCAC)ACUGC GGUGAAUAC- -GUU------ 2341 ---------- ----UCCGGG UUUUGCACAC ACCGCCCGUC ACACCACGGA AAUUGGCUAC 2401 GCCCGAAGUC AUU---ACUC U-AACCa(-- -ucuaa---- --)uGG-AGG GGGAUGCCU- 2461 AAGG-CGGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.C.moew 2540 bp RNA RNA ~?~???? DEFINITION Chlamydomonas moewusii. ACCESSION X15850 KEYWORDS No information. SOURCE Chlamydomonas moewusii. ORGANISM Chlamydomonas moewusii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X15850 LOCUS MCSSU 2948 bp DNA PLN 27-JUN-1991 DEFINITION C.moewusii chloroplast small subunit (SSU) rRNA gene ACCESSION X15850 KEYWORDS rRNA; small subunit rRNA. SOURCE Chlamydomonas moewusii ORGANISM Chloroplast Chlamydomonas moewusii Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; Volvocales; Chlamydomonadaceae. REFERENCE 1 (bases 1 to 2948) AUTHORS Durocher,V., Gauthier,A., Bellemare,G. and Lemieux,C. TITLE An optional group I intron between the chloroplast small subunit rRNA genes of Chlamydomonas moewusii and C. eugametos JOURNAL Curr. Genet. 15, 277-282 (1989) STANDARD full automatic FEATURES Location/Qualifiers source 1..2948 /organism="Chlamydomonas moewusii" /chloroplast exon <1..1357 /number=1 /product="Small Subunit rRNA" /gene="SSU rRNA" exon 1760..>2948 /number=2 /product="Small Subunit rRNA" /gene="SSU rRNA" intron 1358..1759 /number=1 /cons_splice=(5'site:NO,3'site:NO) mRNA join(868..1357,1760..2751) /gene="SSU rRNA" prim_transcript <1..>2948 /gene="SSU rRNA" repeat_unit 34..54 /rpt_type=INVERTED /note="IR1" repeat_unit 186..206 /rpt_type=INVERTED /note="IR1" repeat_unit 1503..1523 /rpt_type=INVERTED /note="IR1" repeat_unit 1675..1695 /rpt_type=INVERTED /note="IR1" repeat_unit 2915..2935 /rpt_type=INVERTED /note="IR1" repeat_unit 85..105 /rpt_type=INVERTED /note="IR2" repeat_unit 145..151 /rpt_type=INVERTED /note="IR3" repeat_unit 1638..1656 /rpt_type=INVERTED /note="IR4" repeat_unit 2840..2860 /rpt_type=INVERTED /note="IR5" repeat_unit 217..231 /rpt_type=DIRECT /note="D1" repeat_unit 232..246 /rpt_type=DIRECT /note="D1" repeat_unit 247..261 /rpt_type=DIRECT /note="D1" repeat_unit 515..520 /rpt_type=DIRECT /note="D2" repeat_unit 521..526 /rpt_type=DIRECT /note="D2" repeat_unit 527..532 /rpt_type=DIRECT /note="D2" repeat_unit 533..538 /rpt_type=DIRECT /note="D2" repeat_unit 539..544 /rpt_type=DIRECT /note="D2" repeat_unit 545..560 /rpt_type=DIRECT /note="D2" repeat_unit 561..565 /rpt_type=DIRECT /note="D2" CDS join(868..1357,1760..2751) /product="Small Subunit rRNA" /gene="SSU rRNA" /note="30 stops when translation attempted, frame 1, code 0" BASE COUNT 899 a 620 c 769 g 660 t ORIGIN BASE COUNT 418 a 311 c 427 g 326 t 1058 others ORIGIN 1 |--------- ----ACCUAU GAUGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG A--------- ---cugacag (gcaa----- 121 )cuguuag-- ---------- ---|uuuAGU --GGCGGACG GGUGCGUAA- CGCGUAAGA- 181 AUCAAC-AUU C--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGU ---------G GGGGAUAAUA 301 A--------- ---------- ------CGG( GAAA)CUG-U UGGUAAUACC GCAUAA---- 361 ---------- ---------- ---AACU--- ----(GAGG- --)------- AGUUAAA--- 421 ---------- ---------- CAAU------ (-----gaaa -)-----|-- GUUGGCCAGG 481 AAA-CGA-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAA GG)CUUACCA 541 A|GGCCACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUUCG-CAAU 661 -GGGC-(-GC AA)-GCCU-G A-CGAA|GCA AUGCCGCGUG AGGGAAGAAG GGC(---CGU 721 G--)GC-UC- --GUAAACCU C|UUUU-UUC AGAGAAGAAU A--------( -------)-- 781 ------AAUG ACGGU-AUCU GAAGAA-UAA GCUCCGGCU- AACU-AU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAUAG |GGA-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUGAA AAAG---|UC G-ACUGUCAA AUCCCAAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU GG-------- UC---CGGCA GU-CGAgUAC UUUU-UA--A -CUUGAG-UG 1081 UGGUA----- GAGGUAGAG| GGAAUCCCUA G-CGUAACA( GUGAAA)UGU GUAGAUUUUA 1141 GGGAGAACAC CAGC---GGC (GAAG)GCGC UCUA-CUGGG CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------GA CUGACACUGA 1261 G-AGACGAAA GCUAAGGGAG CGAAUAGG(A UU-AGAU-AC )CCUAGUAGU CUUA-GCUGU 1321 AAACGAUGGA A----ACUA| AGUG-CUGC- ---------- ---------- (-cgaau--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --GCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUUU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAUCAGUGGA UUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-C U-CAAAA--A GACUCA(GAA -A-)UGGGU- AAG---UGCC 1681 A--------( gaaa-)---- ----UGGAA- ---------- -----|UUGA GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CG(UUGA)CG UGUAUGG(-U UAAGU)CCUG 1801 CAAC-GAGCG CAACCCUCG| UCCACA-G-U ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uaaauu-- )-------|- ---CUCUGUG GAUACUGCCG GU(G-CAA-- 2041 -)-------- ---------- ------ACUG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC GACACACGUA AUACAAUGGU --UGGGACAA UCAGUA---- 2161 GCUUAGCU(- ---------- ---------- ---------G CGA)AGUU-U GGCAAAUCUG 2221 AG-AAACUCA ACCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 UGAU------ AGUAAU-CGC CAA(UC--AG CCAU)GUGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAA ACCGCCCGUC ACACCAAGAA AGAUUGUAGU 2401 CGGCAAAAUC CUU---AGCU U-AACC-(-- --gaaa---- --)-GG-AGG GCGGGGCUU- 2461 ACCC-UAUUA CCAUUGAUCA UGGUGAAGUC GUAACAAGGU AGGGGUUCU( GGAA)GGAGU 2521 CCCUGGAUCA CCUCCUUCA| // LOCUS chl.C.euga 2540 bp RNA RNA ~?~???? DEFINITION Chlamydomonas eugametos chloroplast SSU rRNA. ACCESSION X15850 KEYWORDS No information. SOURCE Chlamydomonas eugametos chloroplast SSU rRNA. ORGANISM Chlamydomonas eugametos chloroplast SSU rRNA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: ??X15850 Unpublished sequence from Monique Turmel BASE COUNT 416 a 311 c 428 g 326 t 1059 others ORIGIN 1 |--------- ---~ACCUAU GAUGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG A--------- ---cugacag (gcaa----- 121 )cuguuag-- ---------- ---|uuuAGU --GGCGGACG GGUGCGUAA- CGCGUAAGA- 181 AUCAAC-AUU C--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGU ---------G GGGGAUAAUA 301 A--------- ---------- ------CGG( GAAA)CUG-U UGGUAAUACC GCAUAA---- 361 ---------- ---------- ---AACU--- ----(GAGG- --)------- AGUUAAA--- 421 ---------- ---------- caau------ (-----GAAA -)-----|-- guugGCCAGG 481 AAA-CGA-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAA GG)CUUACCA 541 A|GGCCACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUUCG-CAAU 661 -GGGC-(-GC AA)-GCCU-G A-CGAA|GCA AUGCCGCGUG AGGGAAGAAG GGC(---CGU 721 G--)GC-UC- --GUAAACCU C|UUUU-UUC AGAGAAGAAU A--------( -------)-- 781 ------AAUG ACGGU-AUCU GAAGAA-UAA GCUCCGGCU- AACU-AU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAUGG |GGA-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUGAA AAAG---|UC G-ACUGUCAA AUCCCAAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU GG-------- UC---CGGCA GU-CGAgUAC UUUU-UA--A -CUUGAG-UG 1081 UGGUA----- GAGGUAGAG| GGAAUCCCUA G-CGUAACA( GUGAAA)UGU GUAGAUUUUA 1141 GGGAGAACAC CAGC---GGC (GAAG)GCGC UCUA-CUGGG CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------GA CUGACACUGA 1261 G-AGACGAAA GCUAAGGGAG CGAAUAGG(A UU-AGAU-AC )CCUAGUAGU CUUA-GCUGU 1321 AAACGAUGGA A----ACUA| AGUG-CUGC- ---------- ---------- (-cgaau--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --GCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUUU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAUCAGUGGA UUAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-C U-CAAAA--A GACUCA(GAA -A-)UGGGU- AAG---UGCC 1681 A--------( GAAA-)---- ----UGGAA- ---------- -----|UUGA GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CG(UUGA)CG UGUAUGG(-U UAAGU)CCUG 1801 CAAC-GAGCG CAACCCUCG| UCCACA-G-U ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uaaauu-- )-------|- ---CUCUGUG GAUACUGCCG GU(G-CAA-- 2041 -)-------- ---------- ------ACUG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC GACACACGUA AUACAAUGGU --UGGGACAA UCAGUA---- 2161 GCUUAGCU(- ---------- ---------- ---------G CGA)AGUU-U GGCAAAUCUG 2221 AG-AAACUCA ACCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 UGAU------ AGUAAU-CGC CAA(UC--AG CCAU)GUGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAA ACCGCCCGUC ACACCAAGAA AGAUUGUAGU 2401 CGGCAAAAUC CUU---AGCU U-AACC-(-- --gaaa---- --)-GG-AGG GCGGGGCUU- 2461 ACCC-UAUUA CCAUUGAUCA UGGUGAAGUC GUAACAAGGU AGGGGUUCU( GGAA)GGAGU 2521 CCCUGGAUCA CCUCCUUC-| // LOCUS chl.C.pall 2540 bp RNA RNA ~?~???? DEFINITION Chlamydomonas pallidostigmatica. ACCESSION L39865 KEYWORDS No information. SOURCE Chlamydomonas pallidostigmatica. ORGANISM Chlamydomonas pallidostigmatica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: L39865 LOCUS CRECPCPRG 4153 bp DNA PLN 01-JUN-1995 DEFINITION Chlamydomonas pallidostigmatica chloroplast small subunit ribosomal RNA gene, partial CDS. ACCESSION L39865 KEYWORDS 16S-like ribosomal RNA; chloroplast; group I intron; intron-encoded DNA endonuclease; small subunit ribosomal RNA. SOURCE Chlamydomonas pallidostigmatica DNA. ORGANISM Chlamydomonas pallidostigmatica Eukaryotae; mitochondrial eukaryotes; Chlorophyta/Embryophyta group; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas. REFERENCE 1 (bases 1 to 4153) AUTHORS Turmel,M., Mercier,J.-P., Cote,V., Otis,C. and Lemieux,C. TITLE The site-specific DNA endonuclease encoded by a group I intron in the Chlamydomonas pallidostigmatica chloroplast small subunit rRNA gene introduces a single-strand break under low Mg+2 concentration JOURNAL Unpublished (1995) COMMENT NCBI gi: 845296 FEATURES Location/Qualifiers source 1..4153 /organism="Chlamydomonas pallidostigmatica" /sequenced_mol="DNA" exon 1..461 /partial /number=1 primer_bind 1..19 /note="5' primer" prim_transcript 1..4153 intron 462..1872 /note="group I intron containing an internal open reading frame; does not fit consensus" /number=1 /cons_splice=(5'site:no,3'site:no) CDS 719..1423 /note="NCBI gi: 845297" /codon_start=1 /product="site-specific DNA endonuclease I-CpaII" /translation="MTDSKSRNNNNFLSNNLLPLTDDEKALIAGTLLGDAHIQKRGDS YRLKIAHGLDHEELVVWKYNRLIRLCQTTQPPRVETYSTKLKSGVLPQGVVFYTSSGK YLKETYDLFYKQTADGRRVKTITQELIDSLPKHPLVLAAFFMDDGSVRSDCYSGKIAT PGFAGKEESQLLCNYLHSWDVQANVVAHKKANNQYYIGLPAKTFGRFINIIEPYVREV PALCYKLNESRKPRND" exon 1873..2157 /number=2 intron 2158..3446 /note="group I intron containing an internal open reading frame; does not fit consensus" /number=2 /cons_splice=(5'site:no,3'site:no) CDS 2604..3392 /note="NCBI gi: 845298" /codon_start=1 /function="unknown" /product="putative protein of 262 amino acids" /translation="MAQVPLTEIEKSVLCGTILGDASFAISDGYKNARFQSNHSTNQL TWFFWKFFVILKDFTKPTGLIYSEPSGKQLINQTSEASFFEPGEDSLEIPFGKLKIAS LADAKLTELHSVICNKNRKTIERSWLNHMNNYFLMTVWLDDGSMTSGRQGILSFNSYP ADQQQIFRDYLLQVWGIETRLQDTGQKMQNGQPNCRISIKDQENLLNLLRYIAPVVPV REMLYKVCFMAESNLSLSQRWKTEVKGLVRPEFAEEIDKIYAKM" exon 3447..4153 /partial /number=3 primer_bind 4133..4153 /note="3' primer" BASE COUNT 1286 a 813 c 998 g 1056 t ORIGIN BASE COUNT 405 a 306 c 427 g 315 t 1087 others ORIGIN 1 |--------- ---nnnnnnn nnnnnG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGA U--------- -uuucuuuau (uuuu----- 121 )auaaaggaa u--------- ---|gu-AGU --GGCGCACG GGUGCGUAA- CGCGUAAGA- 181 ACUUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------CGGA ---------G GGGGAUAACA 301 U--------- ---------- ------UGG( GAAA)CCG-C UGCUAAUACC CCGUAA---- 361 ---------- ---------- ---CGCU--- ----(GAGA- --)------- AGUGAAA--- 421 ---------- ---------- gguc------ (-----uuag -)-----|-- gaccGCCGAA 481 AGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG GaG(G-UAAC GG)CUCCCCA 541 A|GGCCACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCA-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-UGGA|GCA AUGCCGCGUG GAGGAAGAAG GCC(---CGU 721 G--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAAG A--------( -------)-- 781 ------uCUG ACGGU-AUCU GAGGAA-UAA GCCCCGGCU+ AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GGG-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 UCGUAGGUG- ---|GCUCGU GAAG---|UC U-ACUGUCAA AAAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU GA-------- GC---AGGCA GU-GGA-AAC UCAU-GA--G -CUUGAG-UG 1081 CGGUA----- GAGGUAGAG| GGAACUCUUU A-UGGAGCG( GUGAAA)UGC GUAGAGAUAA 1141 GGAGGAACAC CAGC---GGC (GAAG)GCGC UCUA-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------GA CUGACACUGA 1261 G-GGACGAAA GCUAAGGGAG CGAAUAGG(A UU-AGAU-AC )CCUAGUAGU CUUA-GCUGU 1321 AAACGAUGGA A----ACUA| AGUG-CUGC- ---------- ---------- (-cgaaa--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- --GCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUUU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGAGGUGGA UUAUGUGGAU UAAUUCG(AU GAUACA)CGA AGAACCUUAC 1621 CAGGGUUUGA CA----UG-C C-AAGAA--U CUCCUA(GAA -A-)UGGGA- GAG---UGCC 1681 U--------( GAAA-)---- ----AGGAA- ---------- -----|CUUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G AU(UUGA)AU UGUAUGG(-U UAAGU)CCCA 1801 UAAC-GAGCG CAACCCUUG| UCCUUA-U-U ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uaaagaau )-------|- ---CUAUAAG GAGACUGCCA GC(u-agc-- 2041 -)-------- ---------- ------GCUG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CACCCUGGGC UUCACACGUA AUACAAUGGC --UAAGACAA CCAGAA---- 2161 GCAAAACU(- ---------- ---------- ---------G CGA)AGU--G AGCGAAUCUG 2221 UU-AAACUUA GCCUCAAUUC GGAUUGUAGG C(UGCAACUC )GACUACAUG AAGCCGGAAU 2281 CUCU------ AGUAAU-CGU GGG(UC--AG CUAU)ACCAC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACAGGCAGAA AGCGGAUUUG 2401 UCUCUAAACA AUG---AGUC C-AACCc(cu gauuuu--uc ag)gGG-AGG AUAGUUGCU- 2461 AAAG-AUGAG UCUGUGAAUU AUCUGAAGUC GUAACAAGGU AGGGnnnnn( nnnn)nnnnn 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.C.kess 2540 bp RNA RNA ~?~???? DEFINITION Chlorella kessleri. ACCESSION X65099 KEYWORDS No information. SOURCE Chlorella kessleri. ORGANISM Chlorella kessleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X65099 LOCUS CHLCPSSRRN 1592 bp ds-DNA ORG 23-JUN-1992 DEFINITION C.kessleri plastid DNA for 16S-like rRNA small subunit ACCESSION X65099 KEYWORDS small subunit ribosomal RNA. SOURCE Chloroplast Chlorella kessleri DNA. ORGANISM Chloroplast Chlorella kessleri Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1592) AUTHORS Huss,V.A., Hirsh,E. and Giovannoni,S.J. JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=211-11g (type strain); From EMBL entry CKSSRRNA; dated 01-APR-1992. FEATURES Location/Qualifiers rRNA 1..1592 /product="small subunit rRNA" misc_feature 1..30 /note="PCR amplification primer" BASE COUNT 429 a 338 c 474 g 348 t 3 others ORIGIN BASE COUNT 429 a 338 c 474 g 348 t 951 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGA A-------ug guuucuucua (cuug----- 121 )uagaagaaa uuaa------ ---|UG-AGU --GGCGGACG GGUGAGUAA- CACGUAAGA- 181 ACCUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------G AGGGACAACC 301 A--------- ---------- ------CUG( GAAA)CGG-U GGCUAAAACC UCAUAA---- 361 ---------- ---------- ----GCU--- ----(GAGA- --)------- AGUGAAAA-- 421 ---------- ---------- GAU------- (-----GAAA A)-----|-- -AUCGCCAAG 481 AGA-UGG-|G -CUUGCGG|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU GG)CUUACCA 541 A|GGCAAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCag-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGAUGAAG GCC(---UGU 721 G--)GG-UU- --GUAAACUU C|UUUU-CUC AGAGAAGAAA A--------( -------)-- 781 ------AUUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUGA CAAG---|UC U-CCUGUCAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GC---CGGCA GG-AGA-AAC UAUC-AG--G -CUAGAG-UU 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAUAUCG 1141 GGAGGAACAC CAAA---GGC (GAAA)GCAC UCUG-CUGGG CCG--Auuuu uuuuguuuuu 1201 uuuuguuuuu ugaauccguu caaaaaacaa aaaagaguuc aaaaaaagUA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUC-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-UUGGG UG-------- ---------- (guuuaaaa) 1381 a--------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUUCA-GUAC C-GUAGC--- --(UCAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-ACUU---U UUUCCU(GAA -A-)GGGAA- AGu-ucucac 1681 uuuuuuagg( uuu--)ccua aaaaaguga- ---------- ---ag|GGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(UUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUGA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuu---- )-------|G GGAAACUCAA AAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGUCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGAU---- 2161 GCAAUCCC(- ---------- ---------- ---------G CGA)GGGU-U AGCCAACCUC 2221 AA-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCUAU 2401 GCCCAAAGUC GUU---ACCC C-AACCa(-- -acuac---- --)uGG-AGG GGGAUGCCU- 2461 AAGG-CAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.C.kess 2540 bp RNA RNA ~?~???? DEFINITION Chlorella kessleri. ACCESSION D11346 KEYWORDS No information. SOURCE Chlorella kessleri. ORGANISM Chlorella kessleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: D11346 LOCUS CHLCP16S 1545 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella kessleri chloroplast 16S ribosomal RNA. ACCESSION D11346 KEYWORDS chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella kessleri (strain Chlorella kessleri) rRNA. ORGANISM Chlorella kessleri Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1545) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534861 FEATURES Location/Qualifiers source 1..1545 /organism="Chlorella kessleri" /strain="Chlorella kessleri" /sequenced_mol="rRNA" BASE COUNT 422 a 323 c 458 g 340 t 2 others ORIGIN BASE COUNT 422 a 323 c 458 g 340 t 997 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGA A-------ug guuucuucua (cuug----- 121 )uagaagaaa uuaa------ ---|UG-AGU --GGCGCACG GGUGAGUAA- CACGUAAGA- 181 ACCUGC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------G AGGGACAACC 301 A--------- ---------- ------CUG( GAAA)CGG-U GGCUAAAACC UCAUAA---- 361 ---------- ---------- ----GCU--- ----(GAGA- --)------- AGUGAAAA-- 421 ---------- ---------- GAU------- (-----GAAA -)-----|-- -AUCGCCAAG 481 AGA-UGG-|G -CUUGCGG|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU GG)CUUACCA 541 A|GGCAAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCag-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGAUGAAG GCC(---UGU 721 G--)GG-UU- --GUAAACUU C|UUUU-CUC AGAGAAGAAA A--------( -------)-- 781 ------AUUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUGA CAAG---|UC U-CCUGUCAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GC---CGGCA GG-AGA-AAC UAUC-AG--G -CUAGAG-UU 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAUAUCG 1141 GGAGGAACAC CAAA---GGC (GAAA)GCAC UCUG-CUGGG CCG--Auuuu uuuuguuuuu 1201 uuuuguuuuu ugaauccguu caaaaaauaa aaaagaguuc aaaaaaagUA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUC-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-UUGGG UG-------- ---------- (guuuaaaa) 1381 a--------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUUCA-GUAC C-GUAGC--- --(UAUC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C A-CUU----U UUUCCU(GAA -A-)GGGAA- AGu-ucucac 1681 uuuuuuagg( uuu--)ngua aaaaaguna- ---------- ---ag|GGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(UUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUGA-G-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuu---- )-------|G GGAAACUCAA AAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGUCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGAU---- 2161 GCAAUCCC(- ---------- ---------- ---------U CGA)GGGU-U AGCCAACCUC 2221 AA-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC CGU(UC--AG C-AU)ACGGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCUAU 2401 GCCCAAAGUC GUU---ACCC C-AACCa(-- -acuac---- --)uGG-AGG GGGAUGCCU- 2461 AAGG-CAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.C.mira 2540 bp RNA RNA ~?~???? DEFINITION Chlorella mirabilis. ACCESSION X65100 KEYWORDS No information. SOURCE Chlorella mirabilis. ORGANISM Chlorella mirabilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X65100 LOCUS CHLCPSSRRO 1629 bp ds-DNA ORG 23-JUN-1992 DEFINITION C.mirabilis plastid DNA for 16S-like rRNA small subunit ACCESSION X65100 KEYWORDS small subunit ribosomal RNA. SOURCE Chloroplast Chlorella mirabilis DNA. ORGANISM Chloroplast Chlorella mirabilis Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1629) AUTHORS Huss,V.A., Hirsh,E. and Giovannoni,S.J. JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=748-I (type strain); From EMBL entry CMSSRRNA; dated 01-APR-1992. FEATURES Location/Qualifiers misc_feature 1..30 /note="PCR amplification primer" rRNA 1..1629 /product="small subunit rRNA" misc_feature 1606..1629 /note="PCR amplification primer" BASE COUNT 431 a 348 c 476 g 368 t 6 others ORIGIN BASE COUNT 431 a 348 c 476 g 368 t 917 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG A--gauuuua uguuuuaaaa (cuug----- 121 )uuuuaaaac auaaaauc-- ---|UU-AGU --GGCGGACG GGUGAGGAA- CGCGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGG ---------G AGGGACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC UCAUAU---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGUAAAA--- 421 ---------- ---------- GGGuuauaaa (---ucuacg a)uuuau|ua uUCCGCCUAA 481 AGA-UGG-|G -CUUGCGU|- CUGAUUA-GC UU-GUUGGUG G-G(G-UAAU UG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCag-CAG URAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGAUGACA GCC(---UGU 721 G--)GG-UC- --GUAAACUC C|UUUU-CUC AGAAAAGAAG A--------( -------)-- 781 ------UCUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAU UAAG---|UC U-ACUGUUAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GA-------- GC---CGGCA GU-GGA-AAC UAAU-AA--G -CUUGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGUAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GGAAGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGUG-CUGUG CG-------- ---------- (acucaaac) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUCCA-GUAC U-GUAGC--- --(UAAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GGG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGYU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-AUUUA--G UCUUUU(GAA -A-)AAAAG- ACaguauuuc 1681 uaaccauc-( uuua-)-gau gguuagauu- ---------- -----|GGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UCUUUA-C-U UGCCA-U--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ------uacu 1921 uuuaucagcg aaguaguuau aaaucaacua gcuugucgau uuauuuaagc uuugcucguu 1981 uaguguguu( ---------- )-------|G GGAAAUUAGA GAGACUGCCG GU(GAGAA-- 2041 -)-------- ---------- ------GCCG GRGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA UGAGAU---- 2161 GCAACCUC(- ---------- ---------- ---------G CGA)GAGC-A AGCUAACCUC 2221 AA-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CCAU)ACAGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCUAU 2401 GCCCAAAGUC GUU---ACCC C-AACCu(cg gcguaagcag --)aGG-AGG GGGAUGCCU- 2461 AAGG-CAGAG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.C.sacc 2540 bp RNA RNA ~?~???? DEFINITION Chlorella saccharophila. ACCESSION D11348 KEYWORDS No information. SOURCE Chlorella saccharophila. ORGANISM Chlorella saccharophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: D11348 LOCUS CHLCPS16S 1636 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella saccharophila chloroplast 16S ribosomal RNA. ACCESSION D11348 KEYWORDS chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella saccharophila (strain Chlorella saccharophila) rRNA. ORGANISM Chlorella saccharophila Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1636) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534862 FEATURES Location/Qualifiers source 1..1636 /organism="Chlorella saccharophila" /strain="Chlorella saccharophila" /sequenced_mol="rRNA" BASE COUNT 445 a 351 c 468 g 372 t ORIGIN BASE COUNT 445 a 351 c 468 g 372 t 904 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG A-gguuuaau uuuuuuaagc (uuag----- 121 )guuuaaaaa aaauuaaau- uuc|UU-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAA---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGUAAAA--- 421 ---------- ---------- GGAAU----- (------AGU -)-----|-A UUCUGCCUAA 481 AGA-UGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(G-UAAU UG)CCUACCA 541 A|GGCAACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UUC(U A-CG)GA-A- -GGCag-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGAUGACA GCC(---UGU 721 G--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAAG U--------( -------)-- 781 ------UCUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)GACGGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUCAU UAAG---|UC U-ACUGUUAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GA-------- GU---CGGCA GU-AGA-AAC UAAU-GA--G -CUUGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGUAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GGAAGAACAC CAAU---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUCA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGUG-CUGUG CG-------- ---------- (acucaaaa) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUCCA-GUAC U-GUAGC--- --(UAAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-AUUU---A ACUCU-(GAA -A-)AAGAGG UUu---uacu 1681 agaaccc--( uuuu-)--gg guuuuuaga- ---------- -----|GGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U UGCUU-U--- cuaaguagaa auaaccucag 1861 cuuuaucacg ucgcuugauu acucuuuggu cuuuaccuac acggcccuug cucauuagcc 1921 cuugcuaaug aguaaagccu uugguaaaga cgcagaagac uuuuuuucug cguacgcuac 1981 gauauguca( ---------- )-------|A GGAAACUAGA AAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGU --UAGGACAA UGAGAU---- 2161 GCUACCUC(- ---------- ---------- ---------G CGA)GAGC-A AGCUAACCUC 2221 AA-AAACCUA AUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUUGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CCAU)ACAGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAGAGU AGUUGGCUUG 2401 GCCCAAAGUC GUA---ACUC U-AACC-(-- -cgcaa---- --)-GG-GCG AGAGCGGCU- 2461 AAGG-CAGGG CUGGUAAUGA GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.C.sacc 2540 bp RNA RNA ~?~???? DEFINITION Chlorella saccharophila. ACCESSION D11349 KEYWORDS No information. SOURCE Chlorella saccharophila. ORGANISM Chlorella saccharophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: D11349 LOCUS CHLCPSA16S 1502 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella saccharophila chloroplast 16S ribosomal RNA. ACCESSION D11349 KEYWORDS chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella saccharophila (strain Chlorella saccharophila) rRNA. ORGANISM Chlorella saccharophila Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1502) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534863 FEATURES Location/Qualifiers source 1..1502 /organism="Chlorella saccharophila" /strain="Chlorella saccharophila" /sequenced_mol="rRNA" BASE COUNT 417 a 306 c 432 g 347 t ORIGIN BASE COUNT 417 a 306 c 432 g 347 t 1038 others ORIGIN 1 |--------- ---nnnnnnn nnnnnn-nn( n-nn)nnnn| nnnnCAGGUU GAACGCUGGC 61 GUCAUGCUU- AACACAUGCA AGUCGAACGA Gaauuucuaa aaauuuaagc (uucg----- 121 )guuuaaagu uuuaguucu- u--|UU-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUAC-CUU A--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGU ---------G AGGGAUACCA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC UCAUAU---- 361 ---------- ---------- ----GCU--- ----(GAGA- --)------- AGUAAAA--- 421 ---------- ---------- GGUGU----- (------ACU -)-----|-A CAUCGCCAUA 481 AGA-GGG-|G -CUUGCGU|- CUGAUUA-GU UA-GUUGGUG G-G(G-UAAA UG)CUUACCA 541 A|GACUAUGA UCAGUAGUUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGUCGCGUG GAGGAAGAAG GCC(---CGU 721 G--)GG-UC- --GUAAACUC C|UUUU-GUC AAAGAAGAAA A--------( -------)-- 781 ------UAUG ACGGU-AUUU GACGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG CGUAAAGGGU 901 CCUGAGGUG- ---|GCUAGC CAAG---|UC U-AUUGUGAA AUAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GA-------- AC---AUGCG GU-GGA-AAC UGGA-AA--G -CUUGAG-UA 1081 CAGUA----- GGGGCGGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC AUAGAUAUCG 1141 GGAAGAACAC CAAC---GGC (GAAA)GCAC UCCG-CUGGG CUG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 C-AGACGAAA GCUAGGGUAG CGAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUA-GCCGU 1321 AAACGAUGGA C----ACUA| ACUA-UUGAA UGA------- ---------- (aaucaaa-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|uC GUACA-GUGG U-GAAGC--- --(UAAC)GC GA-UAAGUGU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GGG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UU-U U-ACUUU--C CUUUUU(GAA -A-)AAAAG- GGu-guacua 1681 cuu------( uucg-)---- --aaguaga- ---------- -----|GGUA UAAAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUCGGG(-U UAAGU)CCUU 1801 UAAC-GAGCG CAACCCUUG| UCUUUA-G-U UGAGU-Cugu ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -----cuuuu 1981 auaaagaua( ---------- )----gua|U CCAAACUAGA GAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGAG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGUCCUGGGC UACACACGUG CUACAAUGGC --CGGGACAA AGAGAU---- 2161 GCAACCCU(- ---------- ---------- ---------G CGA)AGGU-A AGCUAACCUC 2221 AA-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAA-CGC UGG(UC--AG A-AU)ACAGC GUUGAAUAUU -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACAUUCGGGG AAUUGGGUUG 2401 GUUCGAAAUC AUU---AUCU U-AACCu(-- --uuu----- --)aGG-AGA GAGGUGCUU- 2461 ACAG-CCGGU CUAGUGACUC AAAUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 nnnnnnnnnn nnnnnnnn-| // LOCUS chl.C.elli 2540 bp RNA RNA 18-JAN-1988 DEFINITION chloroplast:Chlorella ellipsoidea. ACCESSION X12742 KEYWORDS No information. SOURCE chloroplast:Chlorella ellipsoidea. ORGANISM chloroplast:Chlorella ellipsoidea. REFERENCE 1 (bases 1 to 1473) AUTHORS No information JOURNAL published:Yamada, NAR 16:9865(1988) STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X12742 BASE COUNT 435 a 335 c 459 g 354 t 957 others ORIGIN 1 |--------- ---~UUUCAU GGAGAG-UU( UCGA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG A---gguuug cuuuuuuuaa (gcuuagg-- 121 )uuaaaaaaa aguaaauuc- ---|UU-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGC ---------G GGGGACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAA---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGUAAAA--- 421 ---------- ---------- ggaa------ (-----uacu a)-----|-- uucuGUCUAA 481 AGA-UGG-|G -CUUGCGU|- CUGAUUA-GC UU-GUUGGUG A-G(G-UAAU UG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UUC(U A-CG)GA-A- -GGCAG-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GC-U-G A-CGGA|GCA AUGCCGCGUG GAGGAUGACA GCC(---UGU 721 G--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAAG U--------( -------)-- 781 ------UCUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)GACGGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAU UAAG---|UC U-ACUGUUAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GA-------- GU---CGGCA GU-AGA-AAC UAAU-GA--G -CUUGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCGG G-UGUAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GGAAGAACAC CAAU---GGC (GAAA)G-AC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUCA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGUG-CUGUG CGA------- ---------- (-cucaaa-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|AC GUCCA-GUAC U-GUAGC--- --(UAAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-AUUUA--A UCUCUU(GAA -A-)AAGAG- AUuuugaaac 1681 uugug----( cuuug)---- cacaaguug- ---------- -----|GGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U UGCU------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- uuuaaaauau acaauuuaaa aggaaugcga agcauaacuu cgcauacuuu 1981 aguauguga( ---------- )-------|A GGAAACUACA AAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGC --CAGGACAA UGAGAU---- 2161 GCUACCUC(- ---------- ---------- ---------G CGA)GAGC-A AGCUAACCUC 2221 AA-AAACCUG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CCAU)ACAGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUACCAG AGUCGGCUUG 2401 GCCCAAAGUC GUA---ACUC U-AACC-(-- --uucg---- --)-GG-AAG AGAGCGCCU- 2461 AAGG-CAGG- CUGGUAAUGA GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUA-| // LOCUS chl.C.soro 2540 bp RNA RNA ~?~???? DEFINITION Chlorella sorokiniana. ACCESSION X65689 KEYWORDS No information. SOURCE Chlorella sorokiniana. ORGANISM Chlorella sorokiniana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X65689 ID CSSSRRNAX standard; RNA; ORG; 1493 BP. XX AC X65689; XX DT 25-MAY-1992 (Rel. 31, Created) DT 04-JUN-1992 (Rel. 32, Last updated, Version 7) XX DE C.sorokiniana plastid DNA small subunit (16S-like) ribosomal RNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella sorokiniana OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX OG Plastid XX RN [1] RP 1-1493 RA Huss V.A.R.; RT ; RL Submitted (24-APR-1992) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanik und Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr 5, W 8520 Erlangen, FRG XX RN [2] RP 1-1493 RA Huss V.A.R., Hatzack F., Fox G.E.; RT ; RL Unpublished. XX CC *source: strain=211-8k (Type strain); XX FH Key Location/Qualifiers FH FT misc_feature 1..30 FT /note="PCR amplification primer" FT rRNA 1..1493 FT /product="small subunit rRNA" FT misc_feature 1470..1493 FT /note="PCR amplification primer" XX SQ Sequence 1493 BP; 391 A; 328 C; 461 G; 308 T; 5 other; BASE COUNT 391 a 328 c 461 g 308 t 1052 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGA A--------- ugcaaugagg (cuug----- 121 )cuucauugu aa-------- ---|UG-AGU --GGCGGACG GGUGAGUAA- CACGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------G AGGGACAACC 301 A--------- ---------- ------UUG( GAAA)CGA-U GGCUAAUACC UCGUAU---- 361 ---------- ---------- ---UGCU--- ----(GAGA- --)------- AGUGAAA--- 421 ---------- ---------- GAU------- (-----GAAA -)-----|-- -AUCGCCAAG 481 AGA-UGG-|G -CUUGCGG|- CUGAUUA-GC UU-GUUGGUG A-G(G-UAAU GG)CUUACCA 541 A|GGCAAUGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCag-CAG UGAGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGAUGAAG GCC(---UAU 721 G--)GG-UU- --GUAAACUU C|UUUU-CUC AGAGAAGAAU U--------( -------)-- 781 -------UUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUCA AAAG---|UC U-CCUGUCAA AGAUCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- GC---CGGCA GG-AGA-AAC UCUG-AG--G -CUAGAG-UU 1081 UGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAGMUCG 1141 GGAGGAACAC CAAA---GGC (GAAA)GCAC UCUG-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG CAAAAGGG(A UU-AGAU-AC )CCCUGUAGU CCUC-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGGA UA-------- ---------- (gguuaaag) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUUCA-GUAU C-GGAGC--- --(UAAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGACUUGA CA----UG-C C-ACUU---U UUCCCU(GAA -A-)GGGGA- AGu------- 1681 ---------( uccag)---- ---------- ---------- -----|AGUG GRCAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(UUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUGA-A-U UGCC------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --aguuau-- )-------|G GGAAAUUCAA AAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGUCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGAGAU---- 2161 GCAAACCC(- ---------- ---------- ---------G CGA)GGGC-U AGCCAACCUC 2221 AA-AAACCCG GUCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGUCGGAAU 2281 CGCU------ AGUAAU-CGC AGG(UC--AG CCAU)ACUGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCUAU 2401 GCCCAAAGUC GUU---ACUC C-AACCC(-- --uugu---- --)-GG-AGG GGGACGCCU- 2461 AAGG-CAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS chl.N.euca 2540 bp RNA RNA ~?~???? DEFINITION Nanochlorum eucaryotum Nanochlorum eucaryotum. ACCESSION X76084 KEYWORDS No information. SOURCE Nanochlorum eucaryotum Nanochlorum eucaryotum. ORGANISM Nanochlorum eucaryotum Nanochlorum eucaryotum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X76084 X76084 LOCUS CHNERRNA 5431 bp DNA PLN 24-NOV-1993 DEFINITION N.eucaryotum chloroplast 16S rRNA, tRNA-Ile, tRNA-Ala and 23S rRNA genes. ACCESSION X76084 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; tRNA-Ala; tRNA-Ile. SOURCE Nanochlorum eucaryotum ORGANISM Chloroplast Nanochlorum eucaryotum Eukaryota; Plantae; Thallobionta; Chlorophyta; Chlorophyceae. REFERENCE 1 (bases 1 to 5431) AUTHORS Weinblum,D. TITLE Direct Submission JOURNAL Submitted (10-NOV-1993) to the EMBL/GenBank/DDBJ databases. D. Weinblum, Inst. fuer Physiologiche Chemie, Univ. Mainz, Duesbergweg 6, 55099 Mainz, FRG STANDARD full automatic REFERENCE 2 (bases 1 to 5431) AUTHORS Schreiner,M., Geisert,M., Oed,M., Arendes,J., Guengerich,U., Breter,H.J., Stueber,K. and Weinblum,D. TITLE Phylogenetic relationship of the green alga Nanochlorum eukaryotum deduced from its chloroplast rRNA sequences JOURNAL Unpublished STANDARD full automatic FEATURES Location/Qualifiers source 1..5431 /organism="Nanochlorum eucaryotum" /chloroplast rRNA 90..1551 /product="16S ribosomal RNA" tRNA 1749..1819 /product="tRNA-Ile" tRNA 1914..1986 /product="tRNA-Ala" rRNA 2010..4964 /product="23S ribosomal RNA" BASE COUNT 1634 a 1073 c 1403 g 1321 t ORIGIN BASE COUNT 405 a 306 c 430 g 321 t 1078 others ORIGIN 1 |--------- ---~~~UCAC GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGA A-------ca uaaaauugug (cuug----- 121 )cauaauuuu auac------ ---|UG-AGU --GGCGGACG GGUGAGUAA- CACGUAAGA- 181 ACCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGC ---------G AGGGACAACC 301 A--------- ---------- ------UUG( GAAA)CGAAU GGCUAAUACC UCAUAU---- 361 ---------- ---------- ---uACU--- ----(GAGA- --)------- AGUGAAA--- 421 ---------- ---------- gau------- (-----gaau a)-----|-- -aucACCAAG 481 AGA-UGG-|G -CUU--GU|- CUGAUCA-GC UU-GUUGGUA A-G(G-UAAU GG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCA(U A-CG)GGaA- -GGCAGGCAG UGAGGAAUU- UUCCG-CAAU 661 GGGGC-(GGA AA)-GCCGUg a-CGGA|GCA AUGCCGCGUG AAGGAUGAAU GCC(---UAU 721 G--)GGuUG- --GUAAACUU C|UUUU-CUC AGAGAAGAAU u--------( -------)-- 781 -------UUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-CGAAG CGUUAUCCGG AUUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAU CCAG---|UC U-UCUGUCAA AGU-CAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCUU GG-------- AU---AGGCA GG-AGA-AAC UAAU-AG--A -CUAGAG-UU 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAU-C 1141 GGA-GAACAC CAAA---GGC (GAAA)GCAC UUCUgCUGGG CCG--C---- ---------- 1201 ---------- ---------- ---------- ---------- --------GA CUGACACUGA 1261 G-AGACGAAA GCGAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CUC--GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-UUGGG UG-------- ---------- (-auauua-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C AUUCA-GUAC C-GUAGC--- --(UAAC)GC GU-GAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GCG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCG-UGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-ACUU---U UUUCUU(GAA -A-)AAGAA- AGU------- 1681 ---------( uccg-)---- ---------- ---------- -----|AGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -GCCUCGU|G UC(UUGA)GA UGUUGGG(-U UAAGU)CC-G 1801 CAAC-GAGCG CAACCCUUA| UUU-gu-g-u ugcu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --auuuua-- )-------|g gaacuca-aa gacucc-gu- ---gaua--- 2041 ---------- ---------- ---------g cgagAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCU---- gacgCUGGGC -ACACACGUG AUACAAUGGC --UGGGACAA AGAGAU---- 2161 G-aacccc(- ---------- ---------- ---------a caa)ggca-- AGCCAACCUC 2221 AA-AAACCCA GUCUUAGUUC GGAUUGUAGG C(UGAAACUC )GCCUACAUG AAGCUGGAAU 2281 -GCU------ AGUAAUgCGC AGG(UCuauG CCAU)ACUGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGC-CGUC ACACCAUGGA AGCUGGCUAU 2401 GCC-AAAGUC G-U---ACUC --AAC--(-- --uuag---- --)--g-AGG AGga--GCU- 2461 AAGG-CAGA- CUAGUGACUA GGGUG-AGU- GU-ACA--GU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAU-A CCUCCUUA-| // LOCUS chl.P.zopf 2540 bp RNA RNA ~?~???? DEFINITION Prototheca zopfii. ACCESSION X74006 KEYWORDS No information. SOURCE Prototheca zopfii. ORGANISM Prototheca zopfii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X74006 ID PZ18SRNA standard; circular DNA; PLN; 1515 BP. XX AC X74006; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE P.zopfii plastid gene for 18S small subunit rRNA XX KW 16S ribosomal RNA; small subunit. XX OS Prototheca zopfii OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales. XX OG Plastid XX RN [1] RP 1-1515 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1515 RA Huss V.A.R., Gemple B.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..30 FT /note="PCR amplification 5'-primer" FT rRNA 1..1515 FT /note="16S small subunit" FT source 1..1515 FT /organism="Prototheca zopfii" FT /strain="SAG 263-1a" FT /note="plastid" FT primer_bind complement(1493..1515) FT /note="PCR amplification 3'-primer" XX SQ Sequence 1515 BP; 506 A; 234 C; 331 G; 440 T; 4 other; BASE COUNT 506 a 234 c 331 g 440 t 1029 others ORIGIN 1 |--------- ---UGCCUGC AGAGAG-UU( Y-GA)UCCU| GGCUCAGGAU GAACGCUUGU 61 GGUAGGCUUU AACACAUGCA AGUCGA-CGA U--------- -uuauuaaau (uuuu----- 121 )auuuaaua- ---------- ---|AA-AGU --GGCGAACG GGUGAGUAA- UACAUAAGA- 181 ACUUAC-UUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------UGGA ---------U AGGUAUAGUU 301 U--------- ---------- ------AAA( GAAA)UUU-A AAGUAAUCCC UAAUAU---- 361 ---------- ---------- ---UGCUuuu a---(uuuu- --)---uaaa AGUGAA---- 421 ---------- ---------- ---------- (--------- -)-----|-- ----ACCGAG 481 AAA-AAG-|G -CUUAUGU|- CUGAUUA-GC UA-GUUGGUA A-G(A-UAAU AG)CUUACCA 541 A|GGCGACAA UCAGUAGUUG |GUCU(GAGA )GGAUGAUCA GC|CACAUUG GGA(CUGAGA 601 UACG)GCCCA AAC--UCC(U A-CG)GG-A- -GGCag-CAG UGAGGAAUA- UUCCG-CAAU 661 -GAGC-(-GA AA)-GCUU-G A-CGGA|GCC AUACCACGUG ACCGAAGAAG GC-(---uaa 721 ---)-G-UC- --GUAAAGGU C|UUUU-CUU AGAAAUGAAA A--------( -------)-- 781 -----aAAUG ACAGU-AUCU AAGGAA-UAA GUAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AUUUACUGGG CGUAAAGAGU 901 CUGUAGGUU- ---|GUUUUA AAAG---|UC A-AAUGUUAA AGAUUAAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU AA-------- AA---AAGUG UU-UGA-AAC UUUA-AA--A -CUAGAG-AU 1081 CAAUA----- GAGGUAGAG| GGUAUUUCUG G-UGAAGCG( GUGAAA)UGC UUAGAUAUCA 1141 GAAAGACCAU CAAA---GGC (GAAG)GCAC UCUG-CUGGG UUG--C---- ---------- 1201 ---------- ---------- ---------- ---------- --------UU CUGACACUGA 1261 G-AGACGAAA GCUAGGGUAG CAAAUAGG(A UU-AGAU-AC )CCUAGUAGU CCUA-GCUGU 1321 AAACGAUGGG A----ACUA| GAUA-UUAAA ---------- ---------- (-gaauuu-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- -UUUA-AUAU C-UAAGC--- --(UAAC)GC AU-UAAGUUC 1501 CC|CGCCUGG GAAGUACAGU C(GCAA)GAC CGAAACUUAA AGGAUUUGGC GGGAGCUUAC 1561 A--------C AAUUGGUGGA GCAUGUGGUU UAAUUCG(AU GAUACA)CGA AGAACCUUAC 1621 CGAGGCUUGA CA----UA-A C-UAUUU--A AUUAUU(UUU -U-)AAUAA- aaa---uaau 1681 ---------( aua--)---- -----auua- uguaaacuaa uuaca|AUAG U-UAC|AGGU 1741 GGUGCAUG|- --GUUGUCA| AG-UUCGU|G UU(GUGA)AA CAUUGAG(-U UCAGU)CUCG 1801 UAAC-GGACG GAACCCUAA| UUCUUU-Auu auaau-uauu ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --aaauuuua )----gau|u uuuuaugaag aauacguacu uu(------- 2041 -)uuaauaau acuuuaguua uuauuauggg uAGGAAGCCU AGGAUUUCGA C-AAAUCAUU 2101 AUGCUCCUUA CGCCUCGGGC UACACAUGUG CUACAAUGGU --UAACUC-- --aaua---- 2161 --------(- ---------- ---------- -------uau uau)------ -----uauuu 2221 uC-AAUGUUA AUCAAAGUUC GAAUUAUAAA C(UGAAACUC )GUUUAUAUG AAGUAGGAAU 2281 CAAU------ AGUAAU-CGC AAG(UC--AG CUAU)AUUGC GGUGAAACG- --UC------ 2341 ---------- ----ACUGAG CUCUGUACAG ACCGCCCGUC ACACCUUGGA AAUUGAUUUU 2401 AUUUAAAAAU AAU---UUAU Acaaaca(uu u-gaaa---a aa)ugg-cAA AAAUUAUUC- 2461 AARA-UGAAA UGGAUAACUA AGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGN 2521 GGNUGGAUCA CCUCCUUG-| // LOCUS Chl.Cya.ca 2540 bp RNA RNA 07-OCT-1997 DEFINITION Chloroplast Cyanidium caldarium.; . ACCESSION AF022186 KEYWORDS . SOURCE Chloroplast Cyanidium caldarium. ORGANISM Chloroplast Cyanidium caldarium. REFERENCE 1 (bases 1 to 46880) AUTHORS Gloeckner,G., Rosenthal,A. and Valentin,K. TITLE genome Organisation of 46 kb of the Cyanidium caldarium RK1 plastid JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 46880) AUTHORS Gloeckner,G., Rosenthal,A. and Valentin,K. TITLE Direct Submission JOURNAL Submitted (02-SEP-1997) Department of genome analysis, IMB Jena, Beutenbergstr. 11, Jena 07745, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: AF022186 BASE COUNT 442 a 300 c 409 g 376 t 1013 others ORIGIN 1 |--------- ---AUAUUAU UGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGUACGA A--------- -------aac (uuuaau--- 121 )guu------ ---------- ---|UU-AGU --GGCGAACG GGUGAGUAA- CACGUGAGA- 181 AUUUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------A GAGAAUAACG 301 A--------- ---------- ------UUG( GAAA)CGA-U CGCUAAUACU CUAUAU---- 361 ---------- ---------- ----cucuaa gu--(uuua- --)--auuua gaugaaaaag 421 auuagauuug uacauugugu agau------ (------uua -)-----|-- aucuGCCUAA 481 GGA-GAA-|G -CUCGCGG|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAA UG)CUUACCA 541 A|GGCUAUGA UCAGUAGCUG |GUCU(AAGA )GGACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCUG-CAAU 661 -GGGC-(-GC AA)-GCCU-G A-CAGA|GCA AUACCGCGUG AAGGAAGAAG GCC(---uua 721 g--)GG-UU- --GUAAACUU C|UUUU-GUU AGGGAAGAAA U--------( -------)-- 781 ------UUUG ACGGU-ACCU AAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUUAUUGGG CGUAAAGCGU 901 UUGUAGGUG- ---|GUUUAG CAAG---|UC U-GUUGUUAA AUCUUGAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACUUC AA-------- AC---AAGCA AG-AGA-AAC UGCU-AG--A -CUAGAG-UG 1081 UGGUG----- GAGGCAGAG| GGAAUUUCCA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GAAAGAACAC CAGA---AGC (GAAA)GCGC UUUG-CUAUA CCA--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------AA CUGACACUGA 1261 G-AAACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACUAUGGA U----ACUA| GAUG-UUGCG UAA------- ---------- (--aaga--) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|UU AUGCA-GUGU C-AUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAAAGCUUGA CA----UG-U U-GCGAA--U UUCUU-(uaa -uc)-AAGA- AAG---UACC 1681 ---------( UUUU-)---- -----GGAA- ---------- -----|CGCA AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U UGCCA-CCA- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuaagu-- )-----UG|G GAACUUUAAA AAGACUGCCA GU(GACAA-- 2041 -)-------- ---------- ------GCUG GAGGAAGGUG AGGACGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCUUUGGGC UACACACGUG CUACAAUGAC --UAAGACAA CGAGUC---- 2161 GCAAAGUU(- ---------- ---------- ---------G UGA)AACC-U AGCUAAUCUC 2221 UU-AAACUUA GUCUCAGUUC AGAUUGUAGG C(UGAAACUC )GCCUACAUG AAGACGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAC)ACGGC GGUGAAUUU- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGAUUGU 2401 GCCCGAAGUC GUU--uuuuc u---cca(-- -uaacaa--- --)ugg-uag uAAGCGCCU- 2461 AAGG-CAAAA UUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUUA CCUCCUUU-| // LOCUS chl.C.cald 2540 bp RNA RNA ~?~???? DEFINITION Cyanidium caldarium. ACCESSION X52985 KEYWORDS No information. SOURCE Cyanidium caldarium. ORGANISM Cyanidium caldarium. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X52985 ID CHCC16S standard; DNA; PLN; 1492 BP. XX AC X52985; XX DT 16-JUL-1990 (annotation) XX DE C. caldarium plastid gene for 16S rRNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Cyanidium caldarium OC Eukaryota; Planta; Phycophyta. XX RN [1] (bases 1-1492) RA Maid U.; RT ; RL Submitted (08-MAY-1990) on tape to the EMBL Data Library by: RL Maid U., Institut fuer Pflanzenphysiologie, Heinrich-Buff-Ring 58, RL D-6300 Giessen, FRG. XX RN [2] (bases 1-1492) RA Maid U., Zetsche K.; RT "Nucleotide sequence of the plastid 16S rRNA of the red alga RT Cyanidium caldarium"; RL Nucleic Acids Res. 18:3996-3996(1990). XX CC *source: strain=14-1-1; XX FH Key From To Description FH FT RRNA 1 1492 16S rRNA XX SQ Sequence 1492 BP; 420 A; 300 C; 422 G; 350 T; 0 other; BASE COUNT 420 a 300 c 422 g 350 t 1048 others ORIGIN 1 |--------- ---~UAUAAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU UAACGCUGGC 61 GGUAUGCCU- AACACAUGCA AGUCGUACGA G--------- -------aau (uuu------ 121 )auu------ ---------- ---|CU-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUAC-CUC U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGGAUAACA 301 G--------- ---------- ------UUG( GAAA)CGA-U UGCUAAAACC CCAUAU---- 361 ---------- ---------- ----gcca-- ----(uuau- --)------u ggugaaaa-- 421 ---------- ---------- aga------- (-----uuua -)-----|-- -ucuGCCUGG 481 AGA-UGA-|G -CUCGCGG|- CUGAUUA-GC UA-GUUGGUA G-G(G-UAAU GG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUCU(UAGA )GGAUGAUCA GC|CACACUG GAA(CUGAGA 601 UACG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCA-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-UGGA|GCA AUACCGUGUG AGGGAUGAAG GCC(---UGU 721 G--)GG-UU- --GUAAACCU C|UUUU-UUC AGGAAAGAAA C--------( -------)-- 781 ------UUUG ACGGU-ACCU GAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAU CAAG---|UC U-GCUGUUAA AGCUUGAGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCUC AA-------- AA---AAGCA GU-GGA-AAC UGAU-AG--A -CUAGAG-AA 1081 UGGUA----- GGGGCAGAG| AGAAUUCUCA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUG 1141 AGAAGAAUAC CGAU---AGC (GAAG)GCGC UCUG-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUCA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACUAUGGA U----ACUA| GAUG-UUGug uga------- ---------- (-guaaaa-) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|uu guGCA-GUAU C-GAAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGACCCGC 1561 A--------C AAGCG-UGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGACUUGA CA----UG-U U-ACUAA--U UUCCUU(GAA -A-)GAGGA- AAG---UGCC 1681 ---------( UUUG-)---- -----GGAA- ---------- -----|AGUA AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UCUUUA-G-U UACCA-UCA- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuaagu-- )-----UG|G GGACUCUAAA GAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUA AGGAUGAGGU C-AAGUCAUC 2101 AUGCCCCUUA UGUCCUGGGC UACACACGUG CUACAAUGGU --UAGGACAA UAAGUC---- 2161 GCAAAUUC(- ---------- ---------- ---------G UGA)GAAC-U AGCUAAUCUU 2221 AU-AAACCUA AUCUCAGUAC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGACGGAAU 2281 CGCU------ AGUAAU-CGC UGG(UC--AG CUAC)ACAGC GGUGAAUAC- -GUU------ 2341 ---------- ----CCCGGG UCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCCAU 2401 GUCCGAAAUC AUU---ACUC U-AACC-(-- -uuaau---- --)-GG-AGG AGGAUGCUU- 2461 AAGG-CAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUUA CCUCCUUU-| // LOCUS chl.C.cris 2540 bp RNA RNA ~?~???? DEFINITION Chloroplast Chondrus crispus. ACCESSION Z29521 KEYWORDS No information. SOURCE Chloroplast Chondrus crispus. ORGANISM Chloroplast Chondrus crispus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: Z29521 LOCUS CHCC16SRR 2052 bp DNA PLN 15-DEC-1994 DEFINITION C.crispus Chloroplast gene encoding 16S rRNA, tRNA-Ile, tRNA-Ala, and 23S rRNA (partial). ACCESSION Z29521 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; transfer RNA-Ala; transfer RNA-Ile. SOURCE carragheen. ORGANISM Chloroplast Chondrus crispus Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; Florideophycideae; Gigartinales; Gigartinaceae. REFERENCE 1 (bases 1 to 2052) AUTHORS Leblanc,C., Boyen,C. and Loiseaux-de Goer,S. TITLE Sequence and phylogeny of the plastidial 16s rRNA gene from the red alga Chondrus crispus JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2052) AUTHORS Leblanc,C. TITLE Direct Submission JOURNAL Submitted (19-JAN-1994) to the EMBL/GenBank/DDBJ databases. Catherine Leblanc, CNRS Centre d'etudes d'oceanologie et de biologie marine, Place Georges Teissier, ROSCOFF, 29 682 CEDEX, FRANCE STANDARD full automatic COMMENT NCBI gi: 602525 FEATURES Location/Qualifiers source 1..2052 /organism="Chondrus crispus" /chloroplast /tissue_type="APICES" /cell_type="PROTOPLAST" -35_signal 22..27 -10_signal 46..51 rRNA 135..1625 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 1689..1762 /gene="tRNA-Ile" /note="gat anticodon" /product="transfer RNA-Ile" tRNA 1776..1848 /gene="tRNA-Ala" /note="tgc anticodon" /product="transfer RNA-Ala" rRNA 1902..>2052 /gene="23S rRNA" /product="23S ribosomal RNA" BASE COUNT 606 a 397 c 539 g 510 t ORIGIN BASE COUNT 418 a 310 c 422 g 341 t 1049 others ORIGIN 1 |--------- ---AUACAAC GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- AACACAUGCA AGUUGAACGA A--------- -------agu (uaau----- 121 )gcu------ ---------- ---|UU-AGU --AGCGGACG GGUGAGUAA- UACAUAAGA- 181 AUCUGC-CUU G--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGAAUAACA 301 A--------- ---------- ------UUG( GAAA)CGA-U UGCUAAUGCC CCAUAU---- 361 ---------- ---------- ----GCc--- ----(uucag --)------- aGUGAAAC-- 421 ---------- ---------- AGA------- (-----GAAA -)-----|-- -UCUGCCUUA 481 AGA-UGA-|G -CUUAUGC|- CUGAUUA-GC UA-GUUGGUA A-A(U-UAAA AG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUUU(GAGA )GGAUGAUCA GC|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UUC(U A-CG)GA-A- -GGCag-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GC-U-G A-CGGA|GCA AUACCGCGUG AGGGAAGAAU GCC(---UGU 721 G--)GG-UU- --GUAAACCU C|UUUU-AUC AGGAAAGAAG U--------( -------)-- 781 ------UAUG ACGGU-ACCU GAUGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG UGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GUUUAG UAAG---|UC U-GUUGUUAA AUAUUGGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCUU AA-------- GC---AAGCA AU-GGA-AAC UACU-AG--A -CUAGAG-UA 1081 UGGUA----- UGGGUAAAG| GGAAUUCCCA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GGAAGAACAC CAGC---AGC (GAAA)-CGC UUUA-CUAGG CUA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUCA 1261 G-AGACGAAA GCUAGGGUAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCUGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGCG CG-------- ---------- (uaucgauc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUAU C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GGA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACA)CGA AGAACCUUAC 1621 CAGUGCGUGA CA----UG-U C-ACGAA--U UUUUAC(GAA -A-)UUAAA- AG----UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-G-U UGCCA-UCA- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuagu-- )-----UG|G GCACUCUAAA GAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUA AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA AGCUCUGGGC UACACACGUG CUACAAUGGU --UGUGACAA AGAGUC---- 2161 GCAAAUCU(- ---------- ---------- ---------G UGA)AGAU-A AGCUAAUCUC 2221 AU-AAACGCA GCCUCAGUUC GGAUUGUAGG C(UGAAACUC )GCCUACAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGA AGCUGGCUAU 2401 ACCCGAAGUC GUU---ACUC C-AACC-(-- uuuaugga-- --)-GG-AGG GCGCCUAAG- 2461 G----UAGAG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUA-| // LOCUS chl.P.palm 2540 bp RNA RNA ~?~???? DEFINITION Palmaria palmata. ACCESSION Z18289 KEYWORDS No information. SOURCE Palmaria palmata. ORGANISM Palmaria palmata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: Z18289 ID PPC16SRNA standard; RNA; PLN; 4870 BP. XX AC Z18289; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE Palmaria palmata Chloroplast for 16SrRNA gene. XX KW 16S ribosomal RNA. XX OS Palmaria palmata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Palmariales; Palmariaceae. XX RN [1] RP 1-4870 RA Singh R.K.; RT "The Organization and Primary Structure of the Plastid rRNA Operon RT from the Red Alga Palmaria palmata"; RL Unpublished. XX RN [2] RP 1-4870 RA Singh R.K.; RT ; RL Submitted (09-NOV-1992) on tape to the EMBL Data Library by: RL RAMA K SINGH Ph.D., MARINE BIOSCIENCES, INSTITUTE FOR MARINE RL BIOSCIENCES, NATIONAL RESEARCH COUNCIL, 1411 OXFORD STREET, RL HALIFAX, NOVA SCOTIA, B3H 3Z1, CANADA XX CC *source: haplotype=haploid; CC *source: tissue=thallus; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1486 FT /gene="16SrRNA" FT tRNA 1545..1618 FT /gene="tRNAIle" FT tRNA 1624..1696 FT /gene="tRNAAla" FT rRNA 1743..4627 FT /gene="23SrRNA" FT rRNA 4651..4771 FT /gene="5SrRNA" XX SQ Sequence 4870 BP; 1419 A; 1003 C; 1343 G; 1105 T; 0 other; BASE COUNT 397 a 336 c 436 g 317 t 1054 others ORIGIN 1 |--------- ---ACACCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA A--------- -------ggu (uuu------ 121 )acc------ ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUAC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAAUAACA 301 G--------- ---------- ------UUG( GAAA)CGA-U UGCUAAUGCC CCAUAa---- 361 ---------- ---------- ----GCU--- ----(GAAA- --)------- AGUAAAAu-- 421 ---------- ---------- GA-------- (-----uuuu -)-----|-- --UCGCCCAG 481 GGA-UGA-|G -CUCGCGC|- CUGAUUA-GC UA-GUUGGUA A-G(A-UAAA AG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUUU(GAGA )GGACGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UUC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GC-U-G A-CGGA|GCA AUACCGCGUG AGGGAAGAAu gcc(---cgu 721 g--)CG-UU- --GUAAACCU C|UUUU-CUU AGGGAAGAAG C--------( -------)-- 781 ------UCUG ACGGU-ACCU AAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUCACUGGG CGUAAAGUGU 901 -AGUAGGUG- ---|GCUUAU AAAG---|UC C-GCUGUUAA AUCUUAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU AA-------- GC---CAGCA GU-AGA-AAC UUCU-AG--G -CUAGAG-UA 1081 UGGUA----- GGGGCAGAG| GGAAUUCCCA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GGAAGAACAC CAGA---GGC (GAAA)GCGC UCUG-CUAGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUCA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGCG CG-------- ---------- (uaucgauc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUAU C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUAUGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCG-UGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGAGCUUGA CA----UG-U C-ACGAA--U UUUUUC(GAG -A-)GAAAA- AAG---UGCC 1681 ---------( UUAG-)---- -----GGAA- ---------- -----|CGUG AACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UCUUUA-G-U UGCCA-UCA- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuagu-- )-----UG|G GCACUCUAGA GAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUA AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCUCUGGGC UACACACGUG CUACAAUGGU --CGCGACAA AGAGUU---- 2161 GCCAGUCU(- ---------- ---------- ---------G CAA)AGAC-G CGCUAAUCUC 2221 AU-AAACGUG GCCUCAGUUC GGAUUGUAGG C(UGAAACUC )GCCUACAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAC)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCACGGA AGCUGGCCAC 2401 GCCCAAAGUC GUU---ACCC U-AACC-(-- --uuuu---- --)-GG-AGG GGGGCGCCU- 2461 AAGG-CAGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.Antith 2540 bp RNA RNA ~?~???? DEFINITION Antithamnion sp. ACCESSION X54299 KEYWORDS No information. SOURCE Antithamnion sp. ORGANISM Antithamnion sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X54299 LOCUS ANTCPASSPA 2099 bp ds-DNA ORG 31-JUL-1991 DEFINITION Antithamnion sp. plastid DNA for 16S rRNA/23S rRNA spacer region and tRNA-Ile and tRNA-Ala genes ACCESSION X54299 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; intergenic spacer; spacer DNA; transfer RNA; transfer RNA-Ala; transfer RNA-Ile. SOURCE Chloroplast Antithamnion sp. DNA. ORGANISM Chloroplast Antithamnion sp. Eukaryota; Fungi; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 2099; 1739 to 2042) AUTHORS Maid,U. and Zetsche,K. TITLE Structural features of the plastid ribosomal RNA operons of two red algae:Antithamnion sp. and Cyanidium caldarium JOURNAL Plant Mol. Biol. 16, 537-546 (1991) STANDARD full automatic COMMENT See also X54300 From EMBL entry CHASSPAC; dated 03-JUL-1991. FEATURES Location/Qualifiers rRNA 254..1739 /product="16S ribosomal RNA" /gene="16S rRNA" misc_feature 1740..1793 /note="spacer region I" tRNA 1794..1867 /product="transfer RNA-Ile" /gene="tRNA-Ile" misc_feature 1868..1874 /note="spacer region II" tRNA 1875..1947 /product="transfer RNA-Ala" /gene="tRNA-Ala" misc_feature 1948..2043 /note="spacer region III" rRNA 2044..>2099 /product="23S ribosomal RNA" /gene="23S rRNA" BASE COUNT 617 a 379 c 519 g 584 t ORIGIN BASE COUNT 416 a 302 c 412 g 356 t 1054 others ORIGIN 1 |--------- ---~~ACUAC GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCCU- AACACAUGCA AGUUGAACGA A--------- -------agc (uucg----- 121 )gcu------ ---------- ---|UU-AGU --AGCGGACG GGUGAGUAA- UACAUGAGA- 181 AUCUGC-AUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------G GGGAAUAACA 301 A--------- ---------- ------UUG( GAAA)CGA-U UGCUAAUGCC CCAUAU---- 361 ---------- ---------- ----GCU--- ----(UUAG- --)------- AGUGAAAU-- 421 ---------- ---------- GA-------- (-----uuuu -)-----|-- --UCGCCUGA 481 AUA-UGA-|G -CUCAUGC|- CUGAUUA-GC UA-GUUGGUA G-G(G-UAAA GG)CCUACCA 541 A|GGCGACGA UCAGUAGCUG |GUUU(GAGA )GGAUGAUCA GC|CACACUG GAA(CUGAGA 601 CACG)GUCCA GAC--UUC(U A-CG)GA-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAU GCC(---uau 721 g--)GG-UU- --GUAAACCU C|UUUU-AUU AGGGAAGAAU U--------( -------)-- 781 -------AUG ACGGU-ACCU AAUGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGGG |GAU-GCAAG CGUUAUCCGG AAUCAUUGGG CGUAAAGAGU 901 CUGUAGGUU- ---|GCUUAA UAAG---|UC U-GCUGUUAA AUAUUAGAGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACUUU AA-------- GC---AAGCA GU-AGA-AAC UAUU-AA--G -CUAGAG-UA 1081 UGAUA----- GGGGUAGAG| GGAAUUCCCA G-UGUAGCG( GUGAAA)UGC GUAGAUAUUG 1141 GGAAGAACAC CAGA---AGC (GAAA)-CGC UCUA-CUGGG CCA--U---- ---------- 1201 ---------- ---------- ---------- ---------- --------UA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GAUG-UUGCA CG-------- ---------- (uaucgauc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUAU C-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GAAGUACGCU C(GCAA)GAG UGAAACUCAA AGGAAUUGAC GGGGCCCCGC 1561 A--------C AAGCG-UGGA GCAUGUGGUU UAAUUCG(AU GCAACA)CGA AGAACCUUAC 1621 CAGAACUUGA CA----UA-U C-GCAAA--U UUUUAU(GAG -A-)AUAAA- AAG---UGCU 1681 ---------( UUCG-)---- -----AGAA- ---------- -----|UGCG AAUAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G UC(GUGA)GA UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUUG| UUUUUA-U-U UGCCA-UCA- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( --uuuagu-- )-----UG|G GUACUUUAAA AAGACUGCCG GU(GACAA-- 2041 -)-------- ---------- ------ACCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA UGUUCUGGGC UACACACGUG CUACAAUGGU --UAUGACAA AAAGUC---- 2161 GCAAACUU(- ---------- ---------- ---------G UGA)AAGU-A AGCUAAUCUU 2221 AU-AAACAUA GCCUCAGUUC GGAUUGCAGG C(UGAAACUC )GCCUGCAUG AAGGUGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CUAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACCAUGGG AGCUGGCCAU 2401 GCCCAAAGUU GUU---ACCC U-AUCC-(-- -uuuuua--- --)--G-AGG GGUUCACCU- 2461 AAGG-UUGGG CUAGUGACUG GGGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUAU| // LOCUS chl.P.purp 2540 bp RNA RNA ~?~???? DEFINITION Chloroplast Porphyra purpurea. ACCESSION L07257 KEYWORDS No information. SOURCE Chloroplast Porphyra purpurea. ORGANISM Chloroplast Porphyra purpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: L07257 LOCUS PTERGA 817 bp ds-DNA PLN 26-OCT-1993 DEFINITION Porphyra purpurea chloroplast 16S ribosomal RNA gene, 5' end. ACCESSION L07257 KEYWORDS 16S ribosomal RNA; ribosomal RNA operon; rrnA operon. SOURCE Chloroplast Porphyra purpurea (organelle Chloroplast Porphyra purpurea) DNA. ORGANISM Chloroplast Porphyra purpurea Eukaryota; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 817) AUTHORS Reith,M.E. and Munholland,J.M. TITLE The Ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga, Porphyra purpurea JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers promoter 78..83 /citation=[1] /note="putative" promoter 101..106 /citation=[1] /note="putative" repeat_region 179..>817 /function="ribosomal RNA operon" /rpt_type=DIRECT /evidence=EXPERIMENTAL /citation=[1] rRNA 186..>817 /product="16S ribosomal RNA" /gene="16S rRNA" /citation=[1] /note="The two copies of the 16S rRNA genes of Porphyra purpurea differ at seven positions.; putative" misc_difference replace(267,"g") /citation=[1] /note="one of seven known differences between the two copies of the 16S rRNA genes of the P.purpurea chloroplast genome" misc_difference replace(351,"t") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(385,"g") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(580,"c") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(631,"g") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(655,"a") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(758,"c") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" source 1..817 /organism="Porphyra purpurea" /chloroplast BASE COUNT 254 a 145 c 208 g 210 t ORIGIN BASE COUNT 188 a 127 c 186 g 137 t 1902 others ORIGIN 1 |------uac uggaUACCAC GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA A--------- -----aguuu (guaa----- 121 )aaacu---- ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------A AGGCAUAACA 301 G--------- ---------- ------UUG( GAAA)CGA-C UGCUAAAGCC UCAUAU---- 361 ---------- ---------- ----GCU--- ----(GCAA- --)------- AGUGAAAA-- 421 ---------- ---------- aga------- (-----gaaa -)-----|-- -ucuGCCUAA 481 AGA-UGA-|G -CUCGCGC|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAC UG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUUU(GAGA )GGACGACCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG GCU(---cgu 721 g--)GG-UU- --GUAAACCU C|UUUU-CUU AGGGAAGAAG A--------( -------)-- 781 ------UCUG ACGGU-ACCU AAAGAA-UAA GCAUCGGCU- AACU-CC-GU G(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |GAU-GCAAG CGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUU- ---|GCUUAA UAAG---|UC U-GCUGUUAA AGAUUGGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCC AA-------- ag---cAGCA GU-GGA-AAC UGUU-AA--G -CUAGAG-UA 1081 UGGUA----- AGGGUAAAG| GGAAUUC~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 1501 ~~|~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~-)~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~- ---------- ---~-|~~~~ ~~~~~|~~~~ 1741 ~~~~~~~~|~ ~~~~~~~~~| -~~~~~~~|~ ~~(~~~~)~~ ~~~~~~~(~~ ~~~~~)~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ---------~ ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 2041 ~)-------- ~~----~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~| // LOCUS chl.P.purp 2540 bp RNA RNA ~?~???? DEFINITION Chloroplast Porphyra purpurea. ACCESSION L07258 KEYWORDS No information. SOURCE Chloroplast Porphyra purpurea. ORGANISM Chloroplast Porphyra purpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: L07258 LOCUS PTERGB 826 bp ds-DNA PLN 26-OCT-1993 DEFINITION Porphyra purpurea chloroplast 16S ribosomal RNA gene, 5' end. ACCESSION L07258 KEYWORDS 16S ribosomal DNA; ribosomal RNA operon; rrnB operon. SOURCE Chloroplast Porphyra purpurea (organelle Chloroplast Porphyra purpurea) DNA. ORGANISM Chloroplast Porphyra purpurea Eukaryota; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 826) AUTHORS Reith,M.E. and Munholland,J.M. TITLE The Ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga, Porphyra purpurea JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers promoter 79..84 /citation=[1] /note="putative" promoter 103..108 /citation=[1] /note="putative" repeat_region 188..>826 /function="ribosomal RNA operon" /rpt_type=DIRECT /evidence=EXPERIMENTAL /citation=[1] rRNA 195..>826 /product="16S ribosomal RNA" /gene="16S rRNA" /citation=[1] /note="The two copies of the 16S rRNA genes of Porphyra purpurea differ at seven positions.; putative" misc_difference replace(276,"a") /citation=[1] /note="one of seven known differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(360,"c") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(394,"a") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(589,"t") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(640,"a") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(664,"g") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(767,"t") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" source 1..826 /organism="Porphyra purpurea" /chloroplast BASE COUNT 262 a 144 c 205 g 215 t ORIGIN BASE COUNT 187 a 128 c 187 g 136 t 1902 others ORIGIN 1 |------uac uggaUACCAC GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGUAUGCUU- AACACAUGCA AGUCGAACGA A--------- -----aguuu (guaa----- 121 )gaacu---- ---------- ---|UU-AGU --GGCGGACG GGUGAGUAA- CACGUGAGA- 181 AUCUAC-CUU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------AGGA ---------A AGGCAUAACA 301 G--------- ---------- ------UUG( GAAA)CGA-C UGCUAAAGCC UUAUAU---- 361 ---------- ---------- ----GCU--- ----(GCAA- --)------- AGUGAAAA-- 421 ---------- ---------- aga------- (-----gaaa -)-----|-- -ucuGCCUGA 481 AGA-UGA-|G -CUCGCGC|- CUGAUUA-GC UA-GUUGGUA A-G(G-UAAC UG)CUUACCA 541 A|GGCAACGA UCAGUAGCUG |GUUU(GAGA )GGACGACCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUACCGCGUG AGGGAUGAAG GCC(---cgu 721 g--)GG-UU- --GUAAACCU C|UUUU-CUU AGGGAAGAAG A--------( -------)-- 781 ------UCUG ACGGU-ACCU AAGGAA-UAA GCAUCGGCU- AACU-CC-GU A(CCAGCAGC 841 CGCGGU---A A-)UACGGAG |AAU-GCAAG CGUUAUCCGG AAUCACUGGG CGUAAAGCGU 901 CUGUAGGUU- ---|GCUUAA UAAG---|UC U-GCUGUUAA AGAUUGGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCC AA-------- AG---caGCA GU-GGA-AAC UGUU-AA--G -CUAGAG-UA 1081 UGGUA----- AGGGUAAAG| GGAAUUC~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 1501 ~~|~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~-)~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~- ---------- ---~-|~~~~ ~~~~~|~~~~ 1741 ~~~~~~~~|~ ~~~~~~~~~| -~~~~~~~|~ ~~(~~~~)~~ ~~~~~~~(~~ ~~~~~)~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ---------~ ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 2041 ~)-------- ~~----~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~| // LOCUS chl.M.poly 2540 bp RNA RNA 30-JAN-1986 DEFINITION chloroplast,Marchantia polymorpha(liverwort). ACCESSION X04465 KEYWORDS No information. SOURCE chloroplast,Marchantia polymorpha(liverwort). ORGANISM chloroplast,Marchantia polymorpha(liverwort). REFERENCE 1 (bases 1 to 46880) AUTHORS No information JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2540) Corresponding GenBank entry: X04465 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 380 a 351 c 471 g 294 t 1044 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGG G--------- ---aaggauc (cuagu---- 121 )gguguuu-- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (-----GGAA -)-----|-- -uccGCCUAA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU AG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCU(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCU(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-cg-U-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCU(---CAC 721 G--)GG-UC- --GUAAACUC C|UUUU-CUC AGAGAAGAUG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAU---GGC (GAAA)GCAC UCUU-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGCG-CUGUG C--------- ---------- (uaucgacc) 1381 c--------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-- GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAACG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GUGAA--U CUUUUU(GAA -A-)GAAAA- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCU| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ucauuaaguu )------u|G GAACCCUAAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAGC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGACCUC(- ---------- ---------- ---------G CGA)GAGA-A AGCUAACCUC 2221 AA-AAACCCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CcAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACUC U-AACC-(-- --guaa---- --)-GG-AGG GGGGUGCCG- 2461 AA-C-AGGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.N.taba 2540 bp RNA RNA 19-JAN-1981 DEFINITION chloroplast,Nicotiana tabacum(tabacco). ACCESSION V00165 KEYWORDS No information. SOURCE chloroplast,Nicotiana tabacum(tabacco). ORGANISM chloroplast,Nicotiana tabacum(tabacco). REFERENCE 1 (bases 1 to 46880) AUTHORS No information JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2540) Corresponding GenBank entry: V00165 Phylo:Eubacteria,Cyanobacteria,chloroplast LOCUS CHNTRN1 2113 bp DNA PLN 31-MAR-1992 DEFINITION Tobacco chloroplast genes for 16S ribosomal RNA and tRNA-Val. ACCESSION V00165 J01453 KEYWORDS 16S ribosomal RNA; ribosomal RNA; transfer RNA; transfer RNA-Val. SOURCE tobacco ORGANISM Chloroplast Nicotiana tabacum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Solanales; Solanaceae. REFERENCE 1 (bases 628 to 2113) AUTHORS Tohdoh,N. and Sugiura,M. TITLE The complete nucleotide sequence of a 16S ribosomal RNA gene from tobacco chloroplasts JOURNAL Gene 17, 213-218 (1982) STANDARD full automatic REFERENCE 2 (bases 1 to 766) AUTHORS Tohdoh,N., Shinozaki,K. and Sugiura,M. TITLE Sequence of a putative promoter region for the rRNA genes of tobacco chloroplast DNA JOURNAL Nucleic Acids Res. 9, 5399-5406 (1981) STANDARD full automatic COMMENT NCBI gi: 11799 FEATURES Location/Qualifiers source 1..2113 /organism="Nicotiana tabacum" /chloroplast tRNA 328..399 /note="tRNA-Val" rRNA 628..2113 /note="16S rRNA" BASE COUNT 530 a 473 c 649 g 461 t ORIGIN BASE COUNT 363 a 358 c 483 g 282 t 1054 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (-----GGAA -)-----|-- -uccGCCCGA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GC---G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---CAC 721 G--)GG-UC- --GUGAACUU C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (-aucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCGCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAUGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ucguugaguu )------u|G GAACCCUGAA CAGACUGCCG GU(GUUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUUGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACCCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU U-AACC-(-- --gcaa---- --)-GG--GG GGGAUGCCG- 2461 AA-G-CGGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.N.plum 2540 bp RNA RNA ~?~???? DEFINITION Nicotiana plumbaginifolia. ACCESSION M82900 KEYWORDS No information. SOURCE Nicotiana plumbaginifolia. ORGANISM Nicotiana plumbaginifolia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: M82900 LOCUS TOB16SRRD 1490 bp ds-DNA ORG 14-JUL-1992 DEFINITION Nicotiana plumbaginifolia 16S rRNA gene. ACCESSION M82900 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Nicotiana plumbaginifolia (chromosome Chloroplast Nicotiana plumbaginifolia) mature leaf DNA. ORGANISM Chloroplast Nicotiana plumbaginifolia Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Solanales; Solanaceae. REFERENCE 1 (bases 1 to 1490) AUTHORS Yeh,K.-C., To,K.-Y., Wu,M. and Chen,C.-C. TITLE Nucleotide sequence analysis of Chloroplast 16S rRNA gene in wild type and Streptomycin-resistant Nicotiana plumbaginifolia JOURNAL Unpublished (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1490 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 366 a 360 c 483 g 281 t ORIGIN BASE COUNT 366 a 360 c 483 g 281 t 1050 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----GGAA -)-----|-- -UCCGCCCGA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCag-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---CAC 721 G--)GG-UC- --GUGAACUU C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ucguugaguu )------u|G GAACCCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)-GGU-G AGCUAACCCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.N.plum 2540 bp RNA RNA ~?~???? DEFINITION . ACCESSION X70938 KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS remFT /anticodon=(pos:972..974,aa:Val) remFT rRNA 1226..2714 remFT /product="16S ribosomal RNA" remFT /gene="16SrDNA" remFT tRNA 3015..3051 remFT /product="transfer RNA-Ile-gau" remFT /gene="trnI" remFT /note="5'exon" remXX remSQ Sequence 3274 BP; 825 A; 713 C; 949 G; 787 T; 0 other; ID CHNPTRNVI standard; DNA; ORG; 3274 BP. XX AC X70938; XX DT 06-MAR-1993 (Rel. 35, Created) DT 06-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE N.plumbaginifolia chloroplast 16SrDNA, trnV and trnI genes for 16S DE ribosomal RNA, transfer RNA-Val and transfer RNA-Ile (5'exon) XX KW 16S ribosomal RNA; inverted repeat; ribosomal RNA; transfer RNA; KW transfer RNA-Ile-gau; transfer RNA-Val-gac; trnI gene; trnV gene. XX OS Nicotiana plumbaginifolia (tobacco) OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Asteridae; Solanales; Solanaceae. XX OG Chloroplast XX RN [1] RP 2059-2418 RA O'Neil C., Horvath V.G., Hovarth E., Dix P.H.J., Medgyesy P.; RT "Chloroplast transformation in plants: polyethylene glycol (PEG) RT treatment of protoplasts in an alternative to biolistic delivery RT systems"; RL Plant J. 0:0-0(0). XX RN [2] RP 1-3274 RA Horvath G.V.; RT ; RL Submitted (16-FEB-1993) on tape to the EMBL Data Library by: RL G.V. Horvath, Biolgoical Research Centre, Institute of Plant Phys., RL Hungarian Academy of Science, PO BOx 521, 6701 Szeged, HUNGARY XX CC *source: strain=wild type; CC *source: haplotype=diploid; CC *source: stage=mature plant; CC *source: tissue=leaf; XX FH Key Location/Qualifiers FH FT tRNA 927..998 FT /product="transfer RNA-Val-gac" FT /gene="trnV" BASE COUNT 366 a 359 c 482 g 281 t 1052 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----GGAA -)-----|-- -UCCGCCCGA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCag-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---CAC 721 G--)GG-UC- --GUGAACUU C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCG-UGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ucguugaguu )------u|G GAACCCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)-GGU-G AGCUAACCCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.C.refl 2540 bp RNA RNA ~?~???? DEFINITION Cuscuta reflexa. ACCESSION X72584 KEYWORDS No information. SOURCE Cuscuta reflexa. ORGANISM Cuscuta reflexa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X72584 LOCUS CHCRTRNAV 8807 bp DNA PLN 30-MAR-1993 DEFINITION C.reflexa chloroplast genes trnA, trnI, trnV, rps7, rpS12, ndhB and 16S rDNA ACCESSION X72584 KEYWORDS 16S ribosomal RNA; NADPH dehydrogenase; ndhB gene; pseudogene; ribosomal protein; ribosomal protein S12; ribosomal protein S7; ribosomal RNA; rps12 gene; rps7 gene; transfer RNA-Ala; transfer RNA-Ile; transfer RNA-Val; trnA gene; trnI gene; trnV gene. SOURCE Cuscuta reflexa ORGANISM Chloroplast Cuscuta reflexa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Polemoniales; Convolvulaceae. REFERENCE 1 (bases 1 to 8807) AUTHORS Haberhausen,G. JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 8807) AUTHORS Haberhausen,G. TITLE Direct Submission JOURNAL Submitted (04-MAR-1993) G. Haberhausen, Inst. f. Pflanzenphysiologie, Heinrich-Buff-Ring 58, W-6300 Giessen, FRG STANDARD full automatic FEATURES Location/Qualifiers source 1..8807 /organism="Cuscuta reflexa" /chloroplast mRNA join(6747..7511,7854..8581) /gene="pseudo ndhB" tRNA complement(join(29..63,844..881)) /gene="trnA" /product="transfer RNA-Ala" tRNA complement(join(946..980,1920..1956)) /gene="trnI" /product="transfer RNA-Ile" rRNA complement(2260..3748) /product="16S ribosomal RNA" tRNA complement(3969..4040) /gene="trnV" /product="transfer RNA-Val" exon complement(5198..5430) /product="ribosomal protein S12" /gene="rps12" /note="rps12 3' exon" exon 6747..7511 /number=1 intron 7512..7853 /number=1 exon 7854..8581 /number=2 CDS 6040..6507 /gene="rps7" /product="ribosomal protein S7" /codon_start=1 /translation="MSRRGTAEKKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIY RAVKKIQQKTETNPLSVLRQAIRGVTPDITVKARRVGGSTHQVPVEIGSTQGKALAVR WLLAASRKRPGRDMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR" BASE COUNT 2428 a 2105 c 1874 g 2400 t ORIGIN BASE COUNT 365 a 358 c 482 g 284 t 1051 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGUACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAG- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUA----- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----GGAA -)-----|-- -UCCGCCCGA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCAAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---CAC 721 G--)GG-UC- --GUGAACUU C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAC)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ucguugaguu )------u|G GAACCCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACCCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-UAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.E.virg 2540 bp RNA RNA ~?~???? DEFINITION Epifagus virginiana. ACCESSION X62099 KEYWORDS No information. SOURCE Epifagus virginiana. ORGANISM Epifagus virginiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X62099 ID CHEVIARRN standard; DNA; ORG; 7395 BP. XX AC X62099; XX DT 16-JUN-1992 (Rel. 32, Created) DT 16-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE E.virginiana plastid ribosomal RNA operon, trnI and trnA DE pseudogenes XX KW 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; KW 5S ribosomal RNA; group II intron; Pseudogene; ribosomal RNA; KW transfer RNA-Ala; transfer RNA-Ile. XX OS Epifagus virginiana OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Asteridae. XX OG Plastid XX RN [1] RP 1-7395 RA Wolfe K.H.; RT ; RL Submitted (05-SEP-1991) on tape to the EMBL Data Library by: RL K.H. Wolfe, Indiana University, Dept of Biology, Bloomington IN RL 47405, USA XX RN [2] RP 1-610, 1976-4164 RA Wolfe K.H., Katz-Downie D.S., Morden C.W., Palmer J.D.; RT "Evolution of the plastid ribosomal RNA Operon in a nongreen RT parasitic plant: Accelerated sequence evolution, promoter RT structure, and tRNA Pseudogenes"; RL Plant Mol. Biol. 18:1037-1048(1992). XX CC *source: clone=pEV300, pEV1300, pEV1310, pEV1320; CC *source: chromosome=plastid genome; XX CC See also X61368 for overlapping sequence XX FH Key Location/Qualifiers FH FT rRNA 570..2061 FT /gene="rrn16S" FT tRNA 2324..2370 FT /pseudo /note="exon 1" /gene="trnI(GAU)" FT intron 2371..3258 FT /note="pseudo group II intron" FT tRNA 3259..3292 FT /pseudo /note="exon 2" /gene="trnI(GAU)" FT tRNA 3346..3388 FT /pseudo /gene="trnA(UGC)" /note="exon 1" FT intron 3389..3862 FT /note="pseudo group II intron" FT tRNA 3863..3884 FT /pseudo /gene="trnA(UGC)" /note="exon 2" FT rRNA 4071..6874 FT /gene="rrn23S" FT rRNA 6972..7074 FT /gene="rrn4.5S" FT rRNA 7263..7383 FT /gene="rrn5S" XX SQ Sequence 7395 BP; 2000 A; 1594 C; 2064 G; 1737 T; 0 other; BASE COUNT 373 a 349 c 479 g 291 t 1048 others ORIGIN 1 |--------- ---~UAUAAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-GGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCC U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CCG( GAAA)CGG-C UGCUAAUACC UCGUAA---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCUAAA--- 421 ---------- ---------- gga------- (-----ggaa -)-----|-- -uccGCCCGA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG G-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-G-CU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---CAC 721 G--)GG-UC- --GUGAACUU C|UUUU-ACC GAAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAUG---|UC C-GCCGUCAA AUACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCC GG-------- AC---AGGCG GU-GGA-AAC UAUC-UA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGU UUAGAGAUCG 1141 GGAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUUA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUAUGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 UAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCc-u--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cguuuaauuu )-----gu|G GAACCCUGAA CAGACUGCCG GC(GAGAA-- 2041 -)-------- ---------- ------GCCA GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAACGGC --CGGGACAA AGGGUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACCCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGA C(UGCAACUC )GUCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUA- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGA AGCUGGCCAU 2401 GCCCGAAGUC GUU---AUCU U-AACC-(-- --aaaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 AGCUGGAUCA CCUCCUUU-| // LOCUS chl.P.sati 2540 bp RNA RNA ~?~???? DEFINITION Pisum sativum. ACCESSION X55033 KEYWORDS No information. SOURCE Pisum sativum. ORGANISM Pisum sativum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X55033 LOCUS PEACPPSRRN 7920 bp ds-DNA ORG 28-JUL-1992 DEFINITION P.sativum chloroplast DNA of the single ribosomal RNA operon ACCESSION X55033 KEYWORDS . SOURCE Chloroplast Pisum sativum DNA. ORGANISM Chloroplast Pisum sativum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Fabales; Fabaceae. REFERENCE 1 (bases 1 to 7920) AUTHORS Stummann,B.M., Lehmbeck,J., Bookjans,G. and Henningsen,K.W. TITLE Nucleotide sequence of the single ribosomal RNA operon of pea chloroplast DNA JOURNAL Physiol. Plantarum 72, 139-146 (1988) STANDARD full automatic COMMENT From EMBL entry CHPSRRNAO; dated 01-JUL-1992. FEATURES Location/Qualifiers tRNA join(2699..2734,3418..3453) /gene="trnI-GAU" tRNA join(3519..3555,4356..4391) /gene="trnA-UGC" -35_signal 58..63 -10_signal 86..91 -35_signal 349..354 -10_signal 372..377 tRNA 412..483 /gene="trnV-GAC" -35_signal 549..554 -10_signal 573..578 rRNA 717..2227 /product="16S ribosomal RNA" rRNA 4501..7312 /product="23S ribosomal RNA" rRNA 7391..7495 /product="4.5S ribosomal RNA" rRNA 7726..7846 /product="5S ribosomal RNA" BASE COUNT 2136 a 1745 c 2219 g 1820 t ORIGIN BASE COUNT 382 a 343 c 473 g 290 t 1052 others ORIGIN 1 |--------- -GAagCUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- UACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGAACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCGAAA--- 421 ---------- ---------- GGA------- (-----GGAA -)-----|-- -UCCGCCCAA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CAAG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCag-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAGG CCC(---CU- 721 G--)GG-UC- --AUGAACUU C|UUUU-CCC GGAGAAGAAA A--------( -------)-- 781 ------AAUG ACGGU-AUCC GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UU C-GCUGUCAA AUACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGUG GU-GAA-AAC UACU-AA--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( AUGAAA)UGC GUAGAGAUCG 1141 GAAGGAACAC CAAC---GGC (GAAA)GAAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGUGGCUGUG CG-------- ---------a (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-ACGC U-GUA-C--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCC-GC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-- C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|UGCG -ACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( acguuuaguu )------u|G GAACUCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC UACACAC-UG CUACAAUGGA --CCGGACAA AGGAUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACUUC 2221 AA-AAACCUG UCCUCAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC AUU---ACCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GACUGGAUCA CCUCCU~~-| // LOCUS chl.P.sati 2540 bp RNA RNA ~?~???? DEFINITION Chloroplast Pisum sativum. ACCESSION M37430 KEYWORDS No information. SOURCE Chloroplast Pisum sativum. ORGANISM Chloroplast Pisum sativum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: M37430 LOCUS PEACPDKAA 7920 bp ss-mRNA ORG 19-SEP-1990 DEFINITION Pea Chloroplast 4.5S, 5S, 16S and 23S mRNA. ACCESSION M37430 KEYWORDS ribosomal protein. SOURCE Pea chloroplast, cDNA to mRNA. ORGANISM Chloroplast Pisum sativum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea; Pisum sativum. REFERENCE 1 (bases 1 to 7920) AUTHORS Stummann,B.M., Lehmbeck,J., Bookjans,G. and Henningsen,K.W. TITLE Nucleotide sequence of the single ribosomal RNA operon of pea chloroplast DNA JOURNAL Physiologia Plantarum 72, 139-146 (1988) STANDARD simple staff_entry BASE COUNT 2135 a 1746 c 2219 g 1820 t ORIGIN BASE COUNT 382 a 343 c 473 g 290 t 1052 others ORIGIN 1 |--------- -GAAGCUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- UACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGAACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCGAAA--- 421 ---------- ---------- gga------- (-----GGAA -)-----|-- -uccGCCCAA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CAAG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAGG CCC(---CU- 721 G--)GG-UC- --AUGAACUU C|UUUU-CCC GGAGAAGAAA A--------( -------)-- 781 ------AAUG ACGGU-AUCC GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UU C-GCUGUCAA AUACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGUG GU-GAA-AAC UACU-AA--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( AUGAAA)UGC GUAGAGAUCG 1141 GAAGGAACAC CAAC---GGC (GAAA)GAAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGUGGCUGUG CG-------- ---------a (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-ACGC U-GUA-C--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCC-GC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-- C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|UGCG -ACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( acguuuaguu )------u|G GAACUCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC UACACAC-UG CUACAAUGGA --CCGGACAA AGGAUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACUUC 2221 AA-AAACCUG UCCUCAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC AUU---ACCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GACUGGAUCA CCUCCU~~-| // LOCUS chl.P.sati 2540 bp RNA RNA ~?~???? DEFINITION Chloroplast Pisum sativum. ACCESSION X51598 KEYWORDS No information. SOURCE Chloroplast Pisum sativum. ORGANISM Chloroplast Pisum sativum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X51598 ID PS16SVAL standard; DNA; ORG; 2315 BP. XX AC X51598; XX DT 26-MAY-1992 (Rel. 32, Created) DT 26-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE P.sativum 16S rRNA & tRNA-Val chloroplast genes XX KW 16S ribosomal DNA; 16S ribosomal RNA; chloroplast genome; KW transfer RNA-Val. XX OS Pisum sativum (pea) OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Fabales; Fabaceae. XX OG Chloroplast XX RN [1] RP 1-2315 RA Jagendorf A.T.; RT ; RL Submitted (02-JAN-1989) on tape to the EMBL Data Library by: RL Jagendorf A.T., Cornell University, Section of Plant Biology, 228 RL Plant Science Building, Ithaca, NY 14853, USA. XX RN [2] RP 1-2315 RA Cerutti H., Jagendorf A.T.; RT "Nucleotide sequence of the chloroplast 16S rRNA gene from pea RT (Pisum sativum L.)"; RL Plant Mol. Biol. 17:125-126(1991). XX CC *source: strain=cr. Progress No.9; CC *source: stage=10 day old seedlings; CC *source: clone=pBX5; CC *source: chromosome=plastome; XX CC See also X55033, M37430 & M16862-6 XX FH Key Location/Qualifiers FH FT -35_signal 81..86 FT -10_signal 104..109 FT tRNA 144..215 FT /gene="tRNA-Val" FT -35_signal 281..286 FT -10_signal 305..310 FT rRNA 472..1961 FT /gene="16S rRNA" XX SQ Sequence 2315 BP; 625 A; 493 C; 668 G; 529 T; 0 other; BASE COUNT 380 a 345 c 475 g 290 t 1050 others ORIGIN 1 |--------- -GAAGCUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- UACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGAACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGGACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCGAAA--- 421 ---------- ---------- gga------- (-----GGAA -)-----|-- -uccGCCCAA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-UAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CAAG)GUCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAGAGG CCC(---CU- 721 G--)GG-UC- --AUGAACUU C|UUUU-CCC GGAGAAGAAA A--------( -------)-- 781 ------AAUG ACGGU-AUCC GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UU C-GCUGUCAA AUACCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGUG GU-GAA-AAC UACU-AA--G -CUAGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( AUGAAA)UGC GUAGAGAUCG 1141 GAAGGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGUGGCUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-ACGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-- C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|UGCG -ACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUGA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( acguuuaguu )------u|G GAACUCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC UACACACGUG CUACAAUGGA --CCGGACAA AGGAUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACUUC 2221 AA-AAACCUG UCCUCAGUUC GGAUUGUAGG C(UGCAACUC )GCCUACAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC AUU---ACCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GACUGGAUCA CCUCCU~~-| // LOCUS chl.O.sati 2540 bp RNA RNA ~?~???? DEFINITION Oryza sativa. ACCESSION X15901 KEYWORDS No information. SOURCE Oryza sativa. ORGANISM Oryza sativa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X15901 X15901; Mol. Gen. Genet. 217:185-194(1989). BASE COUNT 376 a 356 c 474 g 285 t 1049 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGAACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (-----GAAA -)-----|-- -uccGCCCAA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUGGAAG GCC(---CAC 721 G--)GG-UC- --GUCAACUU C|UUUU-CUC GGAGAAGAAA C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU CAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC AUUGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-CUGUG CG-------- ---------- (acucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( CUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CUCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cuau-gaguu )------u|G GAACCCUGAA CAGACCGCCG GU(GUUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGAG AGGAUGAGGC C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGG --CGGGACAA AGGGUC---- 2161 GCGAUCUC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACUCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCAGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUAGG AGCUGGCCAU 2401 GUUUGAAGUC AUU---ACCC UUAACC-(-- --guaa---- --)-GG-AGG GGGAUGCCU- 2461 AAGG-CUAGG CUUGCGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.Z.mays 2540 bp RNA RNA ~?~???? DEFINITION chloroplast,Zea mays(maize). ACCESSION Z00028 KEYWORDS No information. SOURCE chloroplast,Zea mays(maize). ORGANISM chloroplast,Zea mays(maize). REFERENCE 1 (bases 1 to 46880) AUTHORS No information JOURNAL Nature 283:739(1980) STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2540) Corresponding GenBank entry: Z00028 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 375 a 356 c 476 g 283 t 1050 others ORIGIN 1 |--------- ---~~CUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGAACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGAACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 A--------- ---------- ------CUG( GAAA)CGG-U UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (-----GAAA -)-----|-- -uccGCCCAA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUGGAAG GCC(---UAC 721 G--)GG-UC- --GUCAACUU C|UUUU-CUC GGAGAAGAAA C--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU CAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC AUUGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAG-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGUG-CUGUG CG-------- ---------- (acucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAGG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( CUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CUCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( cuau-gaguu )------u|G GAACCCUGAA CAGACCGCCG GU(GUUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGAG AGGAUGAGGC C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGG --CGGGACAA AGGGUC---- 2161 GCGAUCUC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACUCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCAGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CcAU)ACGGC GGCGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUAGG AGCUGGCCAG 2401 GUUUGAAGUC AUU---ACCC UuAACC-(-- --guaa---- --)-GG-AGG GGGAUGCCU- 2461 AAGG-CUAGG CUUGCGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.G.max 2540 bp RNA RNA ~?~???? DEFINITION Chloroplast Glycine max. ACCESSION X60428 KEYWORDS No information. SOURCE Chloroplast Glycine max. ORGANISM Chloroplast Glycine max. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X60428 X07675 LOCUS SOYCPV16S 2000 bp ds-DNA ORG 15-DEC-1988 DEFINITION Soybean chloroplast DNA for tRNA-Val and 16S rRNA. ACCESSION X06428 KEYWORDS 16S ribosomal RNA; ribosomal RNA; transfer RNA; transfer RNA-Val. SOURCE soybean (Chloroplast Glycine max). ORGANISM Chloroplast Glycine max Eukaryota; Planta; Spermatophyta; Magnoliopsida; Rosidae; Fabales; Fabaceae. REFERENCE 1 (bases 1 to 2000; enum. 1 to 2000) AUTHORS Stutz,E. JOURNAL Unpublished (1987) Univ de Neuchatel,CH-2000 Neuchatel,Switzerland STANDARD simple automatic REFERENCE 2 (bases 1 to 2000; enum. 1 to 2000) AUTHORS von Allmen,J.-M. and Stutz,E. TITLE The soybean chloroplast genome: Nucleotide seque4nce of a region containing tRNA-Val (GAC) and 16S rRNA gene JOURNAL Nucl Acid Res 16, 1200-1200 (1988) STANDARD simple automatic COMMENT EMBL features not translated to GenBank features: key from to description PRM 78 83 put. -35 region (P1) PRM 102 107 put. -10 region (P1) PRM 172 177 put. alt. -35 region (P2) PRM 195 200 put. alt. -10 region (P2) ANTICDN 261 263 anticodon GAC PRM 374 379 put. -35 region (P3) PRM 395 400 put. -10 region (P3) FEATURES from to/span description tRNA 229 300 tRNA-Val rRNA 522 1991 16S rRNA BASE COUNT 523 a 436 c 604 g 437 t ORIGIN BASE COUNT 368 a 348 c 471 g 283 t 1070 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCCU- UACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )Guuu----- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUAC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (-----GAA- -)-----|-- -uccGCCCGA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CA-U AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )G-AUGAUCA GC|CACACUG GGA(CUGAGA 601 CGAG)GCCCA GAC--UCU(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -G-GC-(-GA AA)-GC-U-G A-CGGA|GCA AUGCCGCGUG AAGGUAGAAG GCC(---UAC 721 ---)GG-UC- --AUGAACUU C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGUGAUCC GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCGGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CG-AAAG-GU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UU C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA CUUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-AUGC U-GUA-C--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCC-GC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCU 1681 ---------( U-CG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( acauuuaguu )------u|G GAACCCUGAG CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU CGAAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAU--- ----GGACAA AGGAUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)-GGU-G AGCUAACUCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGUAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CcAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCC-GAAGUC GUU---ACCU U-AACC-(-- --gcaa---- --)--G-AGG GGGAUGCC-- 2461 --GA-AGGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUU~-| // LOCUS chl.A.inca 2540 bp RNA RNA ~?~???? DEFINITION Chloroplast Alnus incana. ACCESSION U03555 KEYWORDS No information. SOURCE Chloroplast Alnus incana. ORGANISM Chloroplast Alnus incana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: U03555 LOCUS AIU03555 1842 bp DNA PLN 01-JUN-1994 DEFINITION Alnus incana chloroplast 16S rRNA gene, complete sequence. ACCESSION U03555 KEYWORDS . SOURCE Alnus incana ORGANISM Chloroplast Alnus incana Eucaryotae; Embryophyta; Magnoliophyta; Magnoliopsida; Fagales; Betulaceae; Alnus. REFERENCE 1 (bases 1 to 1842) AUTHORS Johnson,D.A. TITLE Nucleotide Sequence of the 16S rRNA from the alder (Alnus incana) JOURNAL Thesis (1993) Biology, University of Ottawa STANDARD full automatic REFERENCE 2 (bases 1 to 1842) AUTHORS Johnson,D.A. TITLE Direct Submission JOURNAL Submitted (17-NOV-1993) Johnson D.A., University of Ottawa, 30 Marie Curie, Ottawa, Ontario, Canada STANDARD full automatic COMMENT NCBI gi: 495322 FEATURES Location/Qualifiers rRNA 175..1666 /product="16S ribosomal RNA" /gene="16S rDNA" /note="Sequence of 16S rRNA coding region defined by homology to previously defined sequences" source 1..1842 /organism="Alnus incana" /chloroplast BASE COUNT 465 a 418 c 581 g 378 t ORIGIN BASE COUNT 366 a 358 c 485 g 283 t 1048 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (-----ggaa -)-----|-- -uccGCCUGA 481 GGA-GGG-|G -CUCGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC-CUCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GC-UGG A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---UAC 721 G--)GG-UC- --GUGAACUU C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)UACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ccguugaguu )------u|G GAACCCUGAG CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAAUGGC --CGGGACAA AGGGUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACCCC 2221 AA-AAACCCG UCCUCAGUUC GGAUUGUAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACCU U-AACC-(-- --acaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.D.caro 2540 bp RNA RNA ~?~???? DEFINITION Daucus carota. ACCESSION X73670 KEYWORDS No information. SOURCE Daucus carota. ORGANISM Daucus carota. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X73670 ID CHDC16SRR standard; DNA; ORG; 2160 BP. XX AC X73670; XX DT 09-JUL-1993 (Rel. 36, Created) DT 09-JUL-1993 (Rel. 36, Last updated, Version 2) XX DE D.carota chloroplast gene for tRNA-Val, 16S rRNA and tRNA-Ile (exon DE 1) XX KW 16S ribosomal RNA; ribosomal RNA; transfer RNA; transfer RNA-Ile; KW transfer RNA-Val. XX OS Daucus carota OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Apiales; Apiaceae. XX OG Chloroplast XX RN [1] RA Manna F.; RT "Nucleotide sequence of Daucus carota chloroplast 16S rRNA gene RT and its flanking regions"; RL Unpublished. XX RN [2] RP 1-2160 RA Manna F.; RT ; RL Submitted (25-JUN-1993) on tape to the EMBL Data Library by: RL F. Manna, Istituto Internazionale di Genetica e, Biofisica, C.N.R., RL VIA GUGLIELMO MARCONI, 12, 80125 Napoli, ITALY XX FH Key Location/Qualifiers FH FT tRNA 1..70 FT /product="tRNA-Val" FT source 1..2160 FT /organism="Daucus carota" FT /cultivar="S.Valery" FT /chloroplast FT rRNA 305..1792 FT /product="16S rRNA" FT tRNA 2114..>2160 FT /product="tRNA-Ile" FT /note="exon 1" XX SQ Sequence 2160 BP; 525 A; 497 C; 662 G; 448 T; 28 other; BASE COUNT 352 a 345 c 461 g 269 t 1113 others ORIGIN 1 |--------- ---~UCUCAU GGAGAG-UU( C-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGGAA- AACACAUGCA AGUCGGACGG G--------- ------aagu (ggu------ 121 )guuu----- ---------- ---|CC-AGU --GGCGGACG GGACUGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGU ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- GGA------- (-----GGAA -)-----|-- -UCCGCCCGA 481 GGG-AGG-|G GCUCGCGU|- CUGAU-A-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GC---G A-CGGA|GCA AUGCCGCGUG GAGGUAGAAG GCC(---CAC 721 G--)GG-UC- --GUGAACUU C|UUUU-CCC GGAGAAGAAG C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGUUUUA A-)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~- ---|~~~~~~ ~~~G---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUAGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA UUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CGAAUGGG(A UU-AAAU-AC )CCCAUUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| GGCG-CUGUG CG-------- ---------- (anucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAAC--- --(UACC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCGCGC 1561 A--------C AAUCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAUGGCUUGA CA----UG-C C-GCGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGAAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCa----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( ucguugaguu )------u|G GAACCCUGAA CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUUGGC GACACUCGUG CUACAAUGGC --CGGGACAA AGGGUU---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACCCC 2221 AA-AAACCCG UCCUCAGUUG GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GGU------ 2341 ---------- ----ACCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCGAAGUC GUU---ACNC UUAACC-(-- --gcaa---- --)-GG-NGG GGGAUGCCG- 2461 AAGC-AGNGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUUU| // LOCUS chl.C.amer 2540 bp RNA RNA ~?~???? DEFINITION Conopholis americana. ACCESSION X58864 KEYWORDS No information. SOURCE Conopholis americana. ORGANISM Conopholis americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2540) Corresponding GenBank entry: X58864 LOCUS CONRRN16S 1978 bp ds-DNA ORG 14-JUL-1992 DEFINITION C.americana plastid 16S rRNA gene and spacer region ACCESSION X58864 KEYWORDS 16S ribosomal RNA; ribosomal DNA intergenic spacer. SOURCE Conopholis americana DNA. ORGANISM Chloroplast Conopholis americana Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Scrophulariales; Orobanchaceae. REFERENCE 1 (bases 1 to 1978) AUTHORS Wimpee,C.F., Morgan,R. and Wrobel,R.L. TITLE An aberrant plastid ribosomal RNA gene cluster in the root parasite Conopholis americana JOURNAL Plant Mol. Biol. 18, 275-285 (1992) STANDARD simple staff_entry COMMENT *source: stage=fruit; *source: clone=B2; See X58863 for related sequence From EMBL entry CARRN16S; dated 25-FEB-1992. FEATURES Location/Qualifiers rRNA 94..1580 /product="16S ribosomal RNA" /gene="16S rRNA" misc_feature 1573..1580 /note="mRNA binding site" misc_feature 1581..>1978 /note="16S-23S gene spacer region" BASE COUNT 536 a 420 c 570 g 452 t ORIGIN BASE COUNT 364 a 352 c 474 g 297 t 1053 others ORIGIN 1 |--------- ---~UCUAAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- GACACAUGCA AGUCGGACGG G--------- -------aag (uggugu--- 121 )uuu------ ---------- ---|CU-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGA-C UGCUAAUACC UCGUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- ggc------- (-----ggaa -)-----|-- -uccGCCCGA 481 GGA-GGG-|G -CUUGCGU|- CUGAUUA-GC UA-GUUGGUG A-G(G-CAAU AG)CUUACCA 541 A|GGCGAUGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U A-CG)GG-A- -GGCAG-CAG UGGGGGAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG GAGGUAUAAG GCC(---CAC 721 G--)GG-UC- --GUCAACUU C|UUUU-ACC UGAUAAGAAA C--------( -------)-- 781 ------AAUG ACGGU-AUCU GGUGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU UAUG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UUA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG| GGAAUUCCCG G-UGGAGCG( GUGAAA)UGU UUAGAGAUCG 1141 GGAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 G-AGACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUG| GGCG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GUGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU U(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU UAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-AUGAA--U CCUCUU(GAA -A-)GAGAG- GGG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGUG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCC 1801 UAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCCc----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( -----uauuu )------u|G GAACCCUGAG CAGACUGCCG GU(GAUAA-- 2041 -)-------- ---------- ------GCCA GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA UGCCCUGGGC GACACACGUG CUACAACGGC --CGGGACAA AGGGUC---- 2161 GCGAUCCC(- ---------- ---------- ---------G CGA)GGGU-G AGCUAACCCC 2221 CA-AAACCCG UCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUUC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACGCUAUGGG AGCUGGUCAU 2401 GCCCUAAGUC GUU---AUCU U-AACC-(-- --acaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CAGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| // LOCUS chl.P.thun 2541 bp RNA RNA ~?~???? DEFINITION Chloroplast Pinus thunbergii. ACCESSION D17510 KEYWORDS No information. SOURCE Chloroplast Pinus thunbergii. ORGANISM Chloroplast Pinus thunbergii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2541) Corresponding GenBank entry: D17510 LOCUS PINCPTRPG 119707 bp ds-DNA PLN 13-AUG-1994 DEFINITION Complete sequence of black pine (Pinus thunbergii) chloroplast DNA. ACCESSION D17510 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; 5S ribosomal RNA; H+ - K+ ATPase beta subunit; RNA polymerase alpha-subunit; RNA polymerase beta subunit; RNA polymerase beta' subunit; RNA polymerase beta-2 subunit; RubisCO large subunit; cytochrome B6; cytochrome f; initiation factor; maturase; protochlorophyllide reductase; ribosomal protein L14; ribosomal protein L16; ribosomal protein L20; ribosomal protein L22; ribosomal protein L23; ribosomal protein L32; ribosomal protein L33; ribosomal protein L36; ribosomal protein S11; ribosomal protein S12; ribosomal protein S14; ribosomal protein S15; ribosomal protein S18; ribosomal protein S19; ribosomal protein S2; ribosomal protein S3; ribosomal protein S4; ribosomal protein S7; ribosomal protein S8. SOURCE Chloroplast Pinus thunbergii (organelle Chloroplast Pinus thunbergii) DNA. ORGANISM Chloroplast Pinus thunbergii Eukaryota; Plantae; Embryobionta; Pinophyta; Pinicae; Pinatae; Pinaceae. REFERENCE 1 (sites) AUTHORS Tsudzuki,J., Nakashima,K., Tsudzuki,T., Hiratsuka,J., Shibata,M., Wakasugi,T. and Sugiura,M. TITLE Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16 JOURNAL Mol. Gen. Genet. 232, 206-214 (1993) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Wakasugi,T., Tsudzuki,J., Ito,S., Nakashima,K., Tsudzuki,T. and Sugiura,M. TITLE Loss of ndh genes as revealed by sequencing the entire chloroplast genome of black pine, Pinus thunbergii JOURNAL Unpublished (1994) STANDARD full automatic REFERENCE 3 (bases 1 to 119707) AUTHORS Tsudzuki,J., Ito,S., Tsudzuki,T., Wakasugi,T. and Sugiura,M. TITLE A new gene encoding tRNA pro (GGG) is present in the chloroplast genome of black pine: a compilation of 32 tRNA genes from black pine chloroplasts JOURNAL Curr. Genet. 26, 153-158 (1994) STANDARD full automatic COMMENT Submitted (27-Aug-1993) to DDBJ by: Masahiro Sugiura Center for Gene Reseach Nagoya University Chikusa-ku, Nagoya 464-01 Japan Phone: 052-781-5111 x3448 Fax: 052-782-3849. NCBI gi: 529643 FEATURES Location/Qualifiers source 1..119707 /organism="Chloroplast Pinus thunbergii" /chloroplast /sequenced_mol="DNA" BASE COUNT 36668 a 23069 c 23013 g 36957 t ORIGIN BASE COUNT 376 a 365 c 474 g 275 t 1051 others ORIGIN 1 |--------- ---~~CUCAU GGAGAG-UU( U-GA)UCCU| GGCUCAGGAU GAACGCUGGC 61 GGCAUGCUU- AACACAUGCA AGUCGGACGG G--------- -------aag (uggug---- 121 )uuu------ ---------- ---|CC-AGU --GGCGGACG GGUGAGUAA- CGCGUAAGA- 181 ACCUGC-CCU U--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ------GGGA ---------G GGGAACAACA 301 G--------- ---------- ------CUG( GAAA)CGG-C UGCUAAUACC CCAUAG---- 361 ---------- ---------- ----GCU--- ----(GAGG- --)------- AGCAAAA--- 421 ---------- ---------- gga------- (-----ggaa -)-----|-- -uccGCCCAA 481 GGAG-GG|-G C-UCGCGU|- CUGAUUA-GU UA-GUUGGUG A-G(G-CAAU GG)CUUACCA 541 A|GGCGACGA UCAGUAGCUG |GUCC(GAGA )GGAUGAUCA GC|CACACUG GGA(CUGAGA 601 CACG)GCCCA GAC--UCC(U AC-G)GG-A- -GGCAG-CAG UGGGGAAUU- UUCCG-CAAU 661 -GGGC-(-GA AA)-GCCU-G A-CGGA|GCA AUGCCGCGUG AAGGCAGAAG GCC(---CAC 721 G--)GG-UC- --AUGAACUU C|UUUU-CUC GGAGAAGAAA A--------( -------)-- 781 ------AAUG ACGGU-AUCU GAGGAA-UAA GCAUCGGCU- AACU-CU-GU G(CCAGCAGC 841 CGCGGU---A A-)GACAGAG |GAU-GCAAG CGUUAUCCGG AAUGAUUGGG CGUAAAGCGU 901 CUGUAGGUG- ---|GCUUUU CAAG---|UC C-GCCGUCAA AUCCCAGGGC (--------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -UCA)ACCCU GG-------- AC---AGGCG GU-GGA-AAC UACC-AA--G -CUGGAG-UA 1081 CGGUA----- GGGGCAGAG- GGAAUUUCCG G-UGGAGCG( GUGAAA)UGC GUUGAGAUCG 1141 GAAAGAACAC CAAC---GGC (GAAA)GCAC UCUG-CUGGG CCG--A---- ---------- 1201 ---------- ---------- ---------- ---------- --------CA CUGACACUGA 1261 GA-GACGAAA GCUAGGGGAG CAAAUGGG(A UU-AGAU-AC )CCCAGUAGU CCUA-GCCGU 1321 AAACGAUGGA U----ACUA| AGUG-CUGUG CG-------- ---------- (uaucgacc) 1381 ---------- ---------- ---------- ---------- ----|----- ---------- 1441 ---------- -------|-C GCGCA-GUGC U-GUAGC--- --(UAAC)GC GU-UAAGUAU 1501 CC|CGCCUGG GGAGUACGUU C(GCAA)GAA UGAAACUCAA AGGAAUUGAC GGGGGCCCGC 1561 A--------C AAGCGGUGGA GCAUGUGGUU CAAUUCG(AU GCAAAG)CGA AGAACCUUAC 1621 CAGGGCUUGA CA----UG-C C-GUGAA--U CCUCCC(GAA -A-)GAGAG- GAG---UGCC 1681 ---------( UUCG-)---- -----GGAA- ---------- -----|CGCG GACAC|AGGU 1741 GGUGCAUG|G CUGUCGUCA| -G-CUCGU|G CC(GUAA)GG UGUUGGG(-U UAAGU)CCCG 1801 CAAC-GAGCG CAACCCUCG| UGUUUA-G-U UGCC---a-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------( gcauuuaguu )------u|G GAACCCUGAA CAGACUGCCG GU(GAUAA-- 2041 ---------- ---------- ------GCCG GAGGAAGGUG AGGAUGACGU C-AAGUCAUC 2101 AUGCCCCUUA CGCCCUGGGC GACACACGUG CUACAAUGAC --CGGGACAA AGGGUC---- 2161 GCGACCCC(- ---------- ---------- ---------G CGA)GGGC-A AGCUAACCUC 2221 AA-AAACCCG GCCUCAGUUC GGAUUGCAGG C(UGCAACUC )GCCUGCAUG AAGCCGGAAU 2281 CGCU------ AGUAAU-CGC CGG(UC--AG CCAU)ACGGC GGUGAAUCC- -GUU------ 2341 ---------- ----CCCGGG CCUUGUACAC ACCGCCCGUC ACACUAUGGG AGCUGGCCAU 2401 GCCCCAAGUC GUU---ACCU U-AACC-(-- --gcaa---- --)-GG-AGG GGGAUGCCG- 2461 AAGG-CUGGG CUAGUGACUG GAGUGAAGUC GUAACAAGGU AGCCGUACU( GGAA)GGUGC 2521 GGCUGGAUCA CCUCCUUU-| ~ //