LOCUS E.coli.ref 3273 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 3273) Corresponding GenBank entry: REFERENCE - J01695 Phylo:Eubacteria,Purple,gamma,3 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 1731 others ORIGIN 1 |~AAAUUGAA GAGUU(UGA) UCAU|GGCUC AGAU-UGAAC GCUGGCGGCA GG|C-CUAAC 61 ACAUGCAAGU CG-AACG|GU AACAG|GAAG AAG(CUUG)[ ---------- ---------- 121 ---------- ------]CUU CUUUGCUG|A CGAGU|GGCG GACGGGUGAG UAAUGUCUGG 181 GA--AACUGC CUGAUGG<-- ---------- --->AGGGGG -AUAACUACU G(G-A-AA)C 241 GGUAGCUAA- UACCGCAUAA CGUC(GCAA) GACCAAAGAG GGGGACC(UU CG)GG|CCUC 301 UU<------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ->GCCAUCGG AU-GU|GCCC AGAU|GGGAU 601 UAGCUA---G UAGGUGGG-( GUAACGG)-C UC-ACCUA|G G-CGA-CGAU |CCCU-AGCU 661 G|GUC-U(GA GA)GGAUGAC C-AGC|CACA CUGGAAC(UG AG-ACAC)GG UCCAGACUCC 721 (-UACG-)GG A-GGCAGCA| GUG--GG-GA AUAUUGCAC- AAUGGG-C(G CAA)GCCUG- 781 A-UGC|A|-G CCAUGCCGCG UGuAUGAAGA AGGCC(UUCG )GGUUGUAAA GUAC|UUUC| 841 AGCGGGGAGG AAGGGAGUAA AG(UUAAUAC )CUUUGCUCA UUGACGUUAC CCGCAGAAG< 901 ---------- ---------- ---------- ---------- ---------| -----(---- 961 ----)---|- ---------- --->AAGCAC C-|GGCUA-A CU-CCGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACGG-AG|-G GUGCAAGCGU U|AAUCGG-A AUUA--CUGG GC|GUAAAGC 1081 GCACGCAGGC G|GUUUGUUA AG|UCAGAUG UGAAAUCCCC GGG(CUCAA) CCUGGGAACU 1141 GCAUCUGAUA CU|GGCAAGC <--------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- --------|- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 |--------- ---------- ---------- ---------- ---->UUGAG UC|UCGU-A- 1681 GAGGGGGGU| AGA-AUUCCA -GGU--GU-A GC-G(GU-GA AA---)UGCG -UAGA-G-AU 1741 C-UGG-AGG- A-AUA-C-CG GUGGC(-GAA G)GC|GGCCC CCUG|G-ACG AAGACUGACG 1801 CU|CA-GGUG CGAAA----- GCGUGGGGAG CAAA--CAG- G(A-UUAG-A -UAC)C-CUG 1861 GUAGU|CCAC -GCC-GUAAA CGAUGUCGAC |UU|-GGAG- GUUGUGC-C- ------(--- 1921 --CUUGA--- -------)-- -----GGCGU GGC-UUCCG- -GAGC(-UAA C)GCGUUAAG 1981 UC-----GAC |-C|GCCUGG -GGAGUAC-G GCC(GCAA)G GUU-A-AAA- -CUCAAAUGA 2041 AUUG|ACGGG GGCCCGC-AC -AAGCGGU|G GAGCAUGUG| GUUUAAUUCG (AUGCAACG) 2101 CGAA-GAACC UUACCUGGUC [--------- ---------- ---------- ---------- 2161 ---------- --------]U UGACAUC|CA CGGAAGUUUU CA(GAGA)UG AGAAUGUGCC 2221 (UUCG)GGAA |CCGUGAGAC |AGGU-GCUG CAUG|GCU-| GU-CGUCA|G CUCGU|GUU- 2281 (GUGA)-AAU GUUGGG(UUA AGU)CCCGCA ACGAGCGCAA CCCUUA|UCC UUUGUUGCCA 2341 GCGG(UCCGG )[-------- ---------- --|------- ---------- ---------- 2401 ---------- ---------- -----)---- ---------| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ---------- 2581 -------]CC G|GGAACUCA AAGGAGACUG CCA-GU(--- ---------- ----GAUAA- 2641 )ACUGGAGGA AGGUGGGGAU GACGUCAAGU CAUC-A|UGG C|CC-UU-AC G-ACCAGGGC 2701 UACACACGUG -CUA-CAAUG GCGCAUACAA AGAGAAGCGA CCUC(GCGA) [--------- 2761 ---------- -|-------- ---------- ---------- ---------- |--------- 2821 ---------- ---------- ---------- -----]GAGC AAGCGGACCU CAUAAAGUGC 2881 GUC-GUAGUC CGGAUUGGAG UC(UGCAACU C)GACU-CCA UGAAGUCGGA AUCGCUAGUA 2941 AUCGU-GGA( UCAGAAU)GC CACGG-UGAA UACGU-UCCC GGGCCU|UGU ACACACCGCC 3001 CGUCACACCA UGGGAG-UGG GUUGCAAAAG AAG-UAGGUA GCU-UAACC- ---------- 3061 ---------- ---------- ---------- --(UUCG--- -)-------- ---------- 3121 ---------- ---------- ---------- ---------- GGA-GGGC|G CUUACC-ACU 3181 UUGUGAUUCA UGACUGGGGU GAAG-UCGUA ACAAGGUAA- CCGUAGG(GG AA)CCUGCGG 3241 UUGGAUCACC UCCUUA~~~~ ~~~~~~~~|| ||| // LOCUS mask 3273 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |~EEEEEEEE EEEEE(EEE) EEEE|xxxxx xxxxxxxxxx xxxxxxxxxx xx|xxxxxxx 61 xxxxxxxxxx xxxxxxx|qq qqqqq|qqqq qqq(qqqq)[ bbbbbbbbbb bbbbbbbbbb 121 bbbbbbbbbb bbbbbb]qqq qqqqqqqq|q qqxxx|qxxx xxxxxxxxxx xxxxxxxxxx 181 xxxxxxxxxx xxxxxxxxxxxxx xxxxxxxxxx x(xxxxxx)x 241 xxxxxxxxxx xxxxxxqqqq qqqq(qqqq) qqqqqqqqqq qqqqqqq(qq qq)qq|qqqq 301 qqxxxxxxxx xxxxx|xxxx xxxx|xxxxx 601 xxxxxxxxxx xxxxxxxxx( xxxxxxx)xx xxxxxxxx|x xxxxxxxxxx |xxxxxxxxx 661 x|xxxxx(xx xx)xxxxxxx xxxxx|xxxx xxxxxxx(xx xxxxxxx)xx xxxxxxxxxx 721 (xxxxxx)xx xxxxxxxxx| xxxxxxxxxx xxxxxxxxxx xxxxxxxx(x xxx)xxxxxx 781 xxxxx|x|xx xxxxxxxxxx xqqqqqqqqq qqqqq(qqqq )qqqqqqqqq qqqq|qqqq| 841 qqqqqqqqqq qqqqqqqqqq qq(qqqqqqq )qqqqqqqqq qqqqqqqqqq qqqqqqqqq< 901 xxxxxxxxxx xxxxxxx(xx xxx)xxxxxx xxxxxxxxxx xxxxxxxxx| xxxxx(xxxx 961 xxxx)xxx|x xxxxxxxxxx xxx>xxxxxx xx|xxxxxxx xxxxxxxxx( xxxxxxxxxx 1021 |xxxxxxx)x xxxxxxx|xx xxxxxxxxxx x|xxxxxxxx xxxxxxxxxx xx|xxxxxxx 1081 xxxxxxxxxx x|qqqqqqqq qq|qqqqqqq qqqqqqqqqq qqq(qqqqq) qqqqqqqqqq 1141 qqqqqqqqqq qq|qqqqqqq qqqxx xx|xxxxxxx 1681 xxxxxxxxx| xxxxxxxxxx xxxxxxxxxx xxxx(xxxxx xxxxx)xxxx xxxxxxxxxx 1741 xxxxxxxxxx xxxxxxxxxx xxxxx(xxxx x)xx|xxxxx xxxx|xxxxx xxxxxxxxxx 1801 xx|xxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx x(xxxxxxxx xxxx)xxxxx 1861 xxxxx|xxxx xxxxxxxxxx xxxxxxxxxx |xx|xxxxxx xxxxxxxxbb bbbbbb(bbb 1921 bbbbbbbbbb bbbbbbb)bb bbbbbbxxxx xxxxxxxxxx xxxxx(xxxx x)xxxxxxxx 1981 xxxxxxxxxx |xx|xxxxxx xxxxxxxxxx xxx(xxxx)x xxxxxxxxxx xxxxxxxxxx 2041 xxxx|xxxxx xxxxxxxxxx xxxxxxxx|x xxxxxxxxx| xxxxxxxxxx (xxxxxxxx) 2101 xxxxxxxxxx xxxxxxxxxx [xxxxxxxxx xxxxxxxxxx xxxxxxx(xx xxxxxxxx)x 2161 xxxxxxxxxx xxxxxxxx]q qqqqqqq|qq qqqqqqqqqq qq(qqqq)qq qqqqqqqqqq 2221 (qqqq)qqqq |qqqqqqqqq |xxxxxxxxx xxxx|xxxx| xxxxxxxx|x xxxxx|xxxx 2281 (xxxx)xxxx xxxxxx(xxx xxx)xxxxxx xxxxxxxxxx xxxxxx|qqq qqqqqqqqqq 2341 qqqq(qqqqq )[xxxxxxxx xxxxxxxxxx xx|bbbbbbb bbbbb(bbbb bbbbbbbbbb 2401 bbbbbbbbbb bbbbbbbbbb bbbbb)bbbb bbbbbbbbb| bbbbbbbbbb bbbbbbbbbb 2461 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbb-bbb bbbbbbbbbb 2521 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbb| xxxxxxxxxx 2581 xxxxxxx]qq q|qqqqqqqq qqqqqxxxxx xxxxxx(xxx xxxxxxxxxx xxxxxxxxxx 2641 )xxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxx|xxx x|xxxxxxxx xxxxxxxxxx 2701 xxxxxxxxxx xxxxxxxxxx xxxxxxqqqq qqqqqqqqqq qqqq(qqqq) [xxxxxxxxx 2761 xxxxbbbbbb b|bbbbbbbb bbbb(bbbbb bb)bbbbbbb bbbbbbbbbb |bbbbxxxxx 2821 xxxx(xxxxx xx)xxxxxxx xxxxxxxxxx xxxxx]qqqq qqqqqqqqqq qqqqqqxxxx 2881 xxxxxxxxxx xxxxxxxxxx xx(xxxxxxx x)xxxxxxxx xxxxxxxxxx xxxxxxxxxx 2941 xxxxxxxxx( xxxxxxx)xx xxxxxxxxxx xxxxxxxxxx xxxxxx|xxx xxxxxxxxxx 3001 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxbbbbbbb bbbbbbbbbb 3061 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bb(xxxxxxx x)bbbbbbbb bbbbbbbbbb 3121 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb xxxxxxxx|x xxxxxxxxxx 3181 xxxxxxxxxx xxxxxxxxxx xxxxxEEEEE EEEEEEEEEE EEEEEEE(EE EE)EEEEEEE 3241 EEEEEEEEEE EEEEEE~~~~ ~~~~~~~~|| ||| // LOCUS (2)-crown 3273 bp RNA RNA 13-JAN-1999 DEFINITION Eukaryote crown group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote crown group. ORGANISM Eukaryote crown group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (3)-Rhodop 3273 bp RNA RNA 13-JAN-1999 DEFINITION Rhodophyta. ACCESSION No information KEYWORDS No information. SOURCE Rhodophyta. ORGANISM Rhodophyta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (4)-Bangio 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangiophyceae. ACCESSION No information KEYWORDS No information. SOURCE Bangiophyceae. ORGANISM Bangiophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (5)-Bangia 3273 bp RNA RNA 08-JAN-1999 DEFINITION Bangiales. ACCESSION No information KEYWORDS No information. SOURCE Bangiales. ORGANISM Bangiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Ban.fuscop 3273 bp RNA RNA ~?~???? DEFINITION Bangia fuscopurpurea. ACCESSION No information KEYWORDS No information. SOURCE Bangia fuscopurpurea. ORGANISM Bangia fuscopurpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF342745 BASE COUNT 462 a 379 c 490 g 490 t 1452 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuc)AGGUCU -U-CU-AAUU GGAAUGAGA| ACAAC(UUUA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguu--(cua 1921 uuugau---- -------)-- -gac-cccgu cagcacccu- -gaGG(-GAG A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u cccg-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------g| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGCAUGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |uaguccu-u 2821 ggcc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augg---- ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ----cca-ga -gcg----cc ag-cc----- gug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AG~~~~~ ~~~~~~~~|| ||| // LOCUS Por.leuc.2 3273 bp RNA RNA ~?~???? DEFINITION Porphyra leucosticta (Baltic). ACCESSION No information KEYWORDS No information. SOURCE Porphyra leucosticta (Baltic). ORGANISM Porphyra leucosticta (Baltic). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF342746 BASE COUNT 463 a 394 c 499 g 478 t 1439 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UGGUGA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uug-gga--- -acaac--a- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU C-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- ggca--(cua 1921 uuauau---- ---------- -gac-uccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --uc------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGUGC-CGAA UACGC-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Ban.atro.1 3273 bp RNA RNA 10-OCT-1994 DEFINITION Bangia atropurpurea.; PCR identification; group I intron; group I self-splicing intron; ribosomal RNA; ribosomal RNA small subunit. ACCESSION L36066 KEYWORDS PCR identification; group I intron; group I self-splicing intron; ribosomal RNA; ribosomal RNA small subunit. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 2863) AUTHORS Singh,R.K., Gutell,R.R. and Ragan,M.A. Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., TITLE Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences An investigation of order Bangiales (Bangiophycidae, JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L36066 BASE COUNT 461 a 392 c 497 g 476 t 1447 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UCAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUCUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.AK 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Alaska/AK). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Alaska/AK). ORGANISM Bangia sp. (Alaska/AK). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 1476 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.GLD 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Greenland/GLD). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Greenland/GLD). ORGANISM Bangia sp. (Greenland/GLD). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 1476 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NH 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (New Hampshire/NH). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (New Hampshire/NH). ORGANISM Bangia sp. (New Hampshire/NH). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043353 LOCUS AF043353 1796 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043353 NID g3335111 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1796) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1796) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1796 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from New Hampshire" rRNA 1..>1796 /product="18S ribosomal RNA" BASE COUNT 456 a 380 c 486 g 472 t 2 others BASE COUNT 456 a 380 c 486 g 472 t 1479 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAYUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG YUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA C-UCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NWT 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Northwest Territories/NWT). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Northwest Territories/NWT). ORGANISM Bangia sp. (Northwest Territories/NWT). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 1476 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.RI 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Rhode Island/RI). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Rhode Island/RI). ORGANISM Bangia sp. (Rhode Island/RI). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043354 LOCUS AF043354 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043354 NID g3335112 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Rhode Island" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 455 a 380 c 484 g 473 t 5 others BASE COUNT 455 a 380 c 484 g 473 t 1481 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU UU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-gguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-YGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-KC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAKUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|UCUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAKU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- yu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BI1 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (England River Thames/BI12). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (England River Thames/BI12). ORGANISM Bangia sp. (England River Thames/BI12). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.GL 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Great Lakes/GL). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Great Lakes/GL). ORGANISM Bangia sp. (Great Lakes/GL). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.IRF 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Ireland freshwater/IRF). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Ireland freshwater/IRF). ORGANISM Bangia sp. (Ireland freshwater/IRF). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.ITF 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Italy freshwater/ITF. ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Italy freshwater/ITF. ORGANISM Bangia sp. (Italy freshwater/ITF. REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.SIM 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Lake Simcoe/SIM) subsp. Lake Simcoe, Ontario. ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Lake Simcoe/SIM) subsp. Lake Simcoe, Ontario. ORGANISM Bangia sp. (Lake Simcoe/SIM). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BC1 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Northern British Columbia/BC1). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Northern British Columbia/BC1). ORGANISM Bangia sp. (Northern British Columbia/BC1). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043360 LOCUS AF043360 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043360 NID g3335118 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from northern British Columbia" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 460 a 375 c 481 g 488 t 3 others BASE COUNT 460 a 375 c 481 g 488 t 1469 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-KGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCU(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-CAA A)GC|AUCUG CCAU|G-GAK GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcuu--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUA GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CUUCGU|--- ---------- 2341 ----(----- )[CCUGAUAA AU-agau-gu --|gcgca-u g----(ccas ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gua----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.atro.2 3273 bp RNA RNA 05-NOV-1996 DEFINITION Bangia atropurpurea.; 18S ribosomal RNA. ACCESSION D88387 KEYWORDS 18S ribosomal RNA. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (14-OCT-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information REFERENCE 2 (bases 1 to 3004) AUTHORS Shimomura,K., Yamazaki,S., Miyata,T. and Saga,N. TITLE Phylogenetic position of Bangia atropurpurea (Bangiales, Rhodophyta) based on the 18S rDNA sequence JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D88387 BASE COUNT 466 a 384 c 492 g 490 t 1441 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAAAU(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAGG)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- auc)CGGGGG 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcuacu(--- 1921 -auuua---- -------)-a uga-ccucgu cagcacccu- -gaGG(-GAA A)CCa--GAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BC2 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Victoria/BC2). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Victoria/BC2). ORGANISM Bangia sp. (Victoria/BC2). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043359 LOCUS AF043359 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043359 NID g3335117 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Victoria, British Columbia" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 375 c 484 g 489 t BASE COUNT 459 a 375 c 484 g 489 t 1466 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -ucuuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- gcua--(-cu 1921 auuaaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gccc(--gga a-)ggucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-aaaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.CA 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (California/CA). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (California/CA). ORGANISM Bangia sp. (California/CA). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043356 LOCUS AF043356 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043356 NID g3335114 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from California" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 372 c 485 g 490 t 1 others BASE COUNT 459 a 372 c 485 g 490 t 1467 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -ucuuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- gcua--(-cu 1921 auuaaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUYGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)ggucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-aaaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.TX 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Texas/TX). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Texas/TX). ORGANISM Bangia sp. (Texas/TX). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043361 LOCUS AF043361 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043361 NID g3335119 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Texas" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 458 a 376 c 484 g 489 t BASE COUNT 458 a 376 c 484 g 489 t 1466 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCU(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcuu--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gua----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NF 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Newfoundland/NF). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Newfoundland/NF). ORGANISM Bangia sp. (Newfoundland/NF). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043357 LOCUS AF043357 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043357 NID g3335115 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Newfoundland" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 378 c 482 g 481 t 7 others BASE COUNT 459 a 378 c 482 g 481 t 1473 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAW-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UNGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcua--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.OR 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Oregon/OR). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Oregon/OR). ORGANISM Bangia sp. (Oregon/OR). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043358 LOCUS AF043358 1806 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043358 NID g3335116 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1806) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1806) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1806 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Oregon" rRNA 1..>1806 /product="18S ribosomal RNA" BASE COUNT 461 a 376 c 482 g 487 t BASE COUNT 461 a 376 c 482 g 487 t 1467 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUUU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUC--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcua--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA C-UCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.MA 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Massachusetts/MA). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Massachusetts/MA). ORGANISM Bangia sp. (Massachusetts/MA). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043362 LOCUS AF043362 1790 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043362 NID g3335120 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1790) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1790 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Massachusetts" rRNA 1..>1790 /product="18S ribosomal RNA" BASE COUNT 457 a 372 c 477 g 483 t 1 others BASE COUNT 457 a 372 c 477 g 483 t 1484 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuc)AGGUCU -U-CU-AAUU GGAAUGAGA| ACAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGC-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|UUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguu--(-cu 1921 auuuga---- -------)-- -ugaccccgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAAA CCUUAU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u ccug-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |uaguccu-u 2821 ggcc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augg---- ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ----cca-ga -gcg----cc ag-cc----- gug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NC 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (North Carolina/NC). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (North Carolina/NC). ORGANISM Bangia sp. (North Carolina/NC). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043363 LOCUS AF043363 1789 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043363 NID g3335121 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1789) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1789) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1789 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from North Carolina" rRNA 1..>1789 /product="18S ribosomal RNA" BASE COUNT 454 a 372 c 479 g 484 t BASE COUNT 454 a 372 c 479 g 484 t 1484 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuc)AGGUCU -U-CU-AAUU GGAAUGAGA| ACAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguu--(-cu 1921 auuuga---- -------)-- -ugaccccgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u ccug-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |uaguccu-u 2821 ggcc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augg---- ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ----cca-ga -gcg----cc ag-cc----- gug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.VIS 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Virgin Islands/VIS7). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Virgin Islands/VIS7). ORGANISM Bangia sp. (Virgin Islands/VIS7). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043364 LOCUS AF043364 1804 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043364 NID g3335122 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1804) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1804) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1804 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from the Virgin Islands" rRNA 1..>1804 /product="18S ribosomal RNA" BASE COUNT 457 a 371 c 496 g 480 t BASE COUNT 457 a 371 c 496 g 480 t 1469 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-c uu-------- 121 --uauac-u- guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -uaacu-uu- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)UGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uug)CGGUCU -U-CU-AAUU GGAAUGAGA| UGAUU(C-CA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-A( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|UU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UUGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CCAUGCCGAC |UG|-GGga- uugacau-g- ggca--(-ca 1921 acuuga---- -------)-- -ugaccgugu cagcacccu- -ggGG(-GAA A)CCa--AAG 1981 UC-ucugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agga-gu --|gcgcaug ugu--(uucg ---------- 2401 ---------- ---------- -----)-gca c-ug-u-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ag-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacucu u|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)gcccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-ugucug gau-cgugg- cu-a-gug-u 3061 g-acgga--- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- ---uccg-ga -gca----ug gg-cc----- gug-aaaa|a gauauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umbi.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra umbilicalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis. ORGANISM Porphyra umbilicalis. REFERENCE 1 (bases 1 to 3004) AUTHORS Neefs et.al. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X53500 LOCUS PTERRNAG 1770 bp ss-mRNA PLN 02-DEC-1991 DEFINITION P.umbilicalis small ribosomal RNA coding region ACCESSION X53500 KEYWORDS small subunit ribosomal RNA. SOURCE Porphyra umbilicalis RNA. ORGANISM Porphyra umbilicalis Eukaryota; Fungi; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1770) AUTHORS Hendriks,L., De Baere,R., Van de Peer,Y., Neefs,J.M., Goris,A. and De Wachter,R. TITLE The evolutionary position of the rhodophyte Porphyra umbilicalis and the basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequence of small ribosomal subunit RNA JOURNAL J. Mol. Evol. 32, 167-177 (1991) STANDARD full automatic COMMENT *source: clone=pUC18; From EMBL entry PURRNAG; dated 17-OCT-1991. BASE COUNT 426 a 384 c 516 g 444 t ORIGIN BASE COUNT 426 a 384 c 516 g 444 t 1503 others ORIGIN 1 |~~~~~U-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uua--cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GC|CGGU-U- 1681 GGGGGCAUU| UGU-AUU-CA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GAUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggca-g- gcau--(--- 1921 uac-ga---- -------)-- -ugaccuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGUUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGG-gc --|-c-gc-u ac---(cauu g-u------- 2401 ---------- ---------- -----)--gu a-gc-u-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gc-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ---------- ---------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 ---ggcg--- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- ---cgcc--- --ug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAGaUCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUC~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.R 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra spiralis var. amplifolia subsp. Porphyra spiralis R.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis var. amplifolia subsp. Porphyra spiralis R. ORGANISM Porphyra spiralis var. amplifolia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26177 LOCUS P.spir.amp.gb 2890 bp ds-DNA PLN 03-JAN-1994 DEFINITION Porphyra spiralis var. amplifolia DNA sequence. ACCESSION L26177 KEYWORDS . SOURCE Porphyra spiralis (individual_isolate PSA-R/Ilha do Cardoso, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 2890) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. (1994) In press STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..22 /note="PCR; putative" intron 1805..2860 /evidence=EXPERIMENTAL /label=Group_I_intron primer_bind complement(2864..2890) /note="PCR; putative" source 1..2890 /organism="Porphyra spiralis" /isolate="PSA-R/Ilha do Cardoso" /variety="amplifolia" /sequenced_mol="DNA" BASE COUNT 729 a 643 c 802 g 716 t ORIGIN BASE COUNT 470 a 389 c 491 g 485 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UACAAcaguu 181 au-aguuccu uugagaa<-- ---ucg-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CGU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcua--(-ca 1921 cuuuca---- -------)-- -cguccacgu cagcacccu- -auGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu a|-------- ---------- ---------- ---------- |caguccu-g 2821 ggcc(--gaa a-)ggcuc-g gguaaccauu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguuug gau-ugcgg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gua----au ag-cc----- gug-aaaa|g aucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.sub.pk 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra suborbiculata. str. pk-49. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. str. pk-49. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 3004) AUTHORS Hong,Y.K. TITLE suborbiculata Nucleotide sequence of the 18s rDNA from Porphyra JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117239 LOCUS AF117239 1777 bp DNA PLN 29-APR-1999 DEFINITION Porphyra suborbiculata 18S ribosomal RNA gene, partial sequence. ACCESSION AF117239 NID g4704700 VERSION AF117239.1 GI:4704700 KEYWORDS . SOURCE Porphyra suborbiculata. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1777) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from Porphyra suborbiculata JOURNAL Unpublished REFERENCE 2 (bases 1 to 1777) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (30-DEC-1998) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1777 /organism="Porphyra suborbiculata" /strain="pk-49" /db_xref="taxon:76158" rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 462 a 352 c 469 g 494 t BASE COUNT 462 a 352 c 469 g 494 t 1496 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaa-u-cu -c-------- 121 ---auac-u- uuga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aauuuau uugauag<-- -ucccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-A AUCGUAUG-( GUAUUGG)-C UU-ACGAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGCU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GUCU(-u ugu)AGAUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |CCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| GCU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CG-AA-GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGGC |AA|-GGga- uuggcgg-u- cguu--(-gu 1921 au-------- -------)-- -ugaccccgu cagcaccuu- -auGA(-GAA A)UCAC-AAG 1981 UC-uuugGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA GGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 aug-cUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cugauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umb.HF 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra umbilicalis High Form. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis High Form. ORGANISM Porphyra umbilicalis High Form. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26202 LOCUS PTEFRE 1819 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra umbilicalis DNA fragment. ACCESSION L26202 NID g507795 KEYWORDS PCR amplified. SOURCE Porphyra umbilicalis (strain high-interdial form) DNA. ORGANISM Porphyra umbilicalis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1819) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1819 /organism="Porphyra umbilicalis" /strain="high-interdial form" /db_xref="taxon:2786" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1793..1819 /standard_name="PCR primer" /note="putative" BASE COUNT 471 a 369 c 485 g 493 t 1 others BASE COUNT 471 a 369 c 485 g 493 t 1455 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACRUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- auu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguuc-(--- 1921 --aguu---- -------)ga augauccugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGGU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCCgaug aaa-uguucg gau-ugugg- cg-u-gcg-u 3061 g-augga--- ---------- ---------- --(uau---- -)-------- ---------- 3121 ---------- ---ccca-ua -gcg----ua cg-uc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Por.den.KF 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka. ORGANISM Porphyra dentata. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013183 LOCUS AB013183 3037 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra dentata gene for small subunit rRNA, isolate Koga Fukuoka. ACCESSION AB013183 NID g3298494 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra dentata gametophyte thallus DNA. ORGANISM Porphyra dentata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3037 /organism="Porphyra dentata" /note="collection_site: Koga Fukuoka" /db_xref="taxon:76160" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3037 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1198 /note="putative" exon 1199..2435 /note="putative" /product="SSU rRNA" intron 2436..3007 /note="group I intron; putative" exon 3008..3037 /note="putative" /product="SSU rRNA" BASE COUNT 772 a 674 c 851 g 740 t BASE COUNT 462 a 390 c 494 g 489 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcuu--(-cu 1921 aauuua---- -------)-- -uguccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUACUAA AU-Aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 aguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-g-cug-u 3061 g-auggac-- ---------- ---------- --(cca---- -)-------- ---------- 3121 ---------- --gucca-ga -gug----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sp.SY 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013182 LOCUS AB013182 3048 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra sp. gene for small subunit rRNA, isolate Shimonoseki Yamaguchi. ACCESSION AB013182 NID g3298493 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra sp. gametophyte thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3048 /organism="Porphyra sp." /note="collection_site: Shimonoseki Yamaguchi" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3048 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..569 /note="putative" /product="SSU rRNA" intron 570..1128 /note="putative" exon 1129..2364 /note="putative" /product="SSU rRNA" intron 2365..3018 /note="group I intron; putative" exon 3019..3048 /note="putative" /product="SSU rRNA" BASE COUNT 780 a 678 c 859 g 731 t BASE COUNT 467 a 391 c 497 g 480 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cac-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 aguaaa---- -------)-- -ugaccacgu cagcacccu- -guGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGAU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---c acug-u-gc| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| cg-au-cUUC 2581 UUAGAGG]-- -|-------- -----GACUG UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUACGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 gauc(--gga a-)gcccc-g gguaaucuuu ugaaa]---- ---------- ------uagc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- aug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ampl.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra amplissima. ACCESSION No information KEYWORDS No information. SOURCE Porphyra amplissima. ORGANISM Porphyra amplissima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L36048 LOCUS PTERRNA 1833 bp DNA PLN 31-AUG-1994 DEFINITION Porphyra amplissima small subunit ribosomal RNA (rDNA) gene. ACCESSION L36048 NID g533257 KEYWORDS PCR identification; ribosomal RNA; ribosomal RNA small subunit. SOURCE Porphyra amplissima (individual_isolate Sandy Cove, Halifax County, Nova Scotia) DNA. ORGANISM Porphyra amplissima Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1833) AUTHORS Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., Singh,R.K., Gutell,R.R. and Ragan,M.A. TITLE An investigation of order Bangiales (Bangiophycidae, Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences JOURNAL Unpublished (1994) COMMENT NCBI gi: 533257 FEATURES Location/Qualifiers source 1..1833 /organism="Porphyra amplissima" /isolate="Sandy Cove, Halifax County, Nova Scotia" /sequenced_mol="DNA" primer_bind complement(1..22) /note="putative" primer_bind 1810..1833 /note="putative" BASE COUNT 464 a 386 c 493 g 490 t ORIGIN BASE COUNT 464 a 386 c 493 g 490 t 1440 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---cac-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GCCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuuga---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUACUAA AU-Aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 ggcc(--gga a-)ggcuu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-ugcgg- cu-u-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcc----gu ag-cc----- gug-agaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGAA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.hait.2 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra haitanensis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015795 LOCUS AB015795 2354 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, partial sequence. ACCESSION AB015795 NID g3986217 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra haitanensis DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2354) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2354 /organism="Porphyra haitanensis" /db_xref="taxon:76159" rRNA join(<1..557,1120..>2354) /product="small subunit rRNA" primer_bind 1..22 intron 558..1119 /note="intron-like structure" primer_bind 2335..2354 BASE COUNT 591 a 518 c 659 g 586 t BASE COUNT 453 a 384 c 483 g 470 t 1483 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAG------- -------UCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUA-U|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcuu--(-cu 1921 aauuca---- -------)-- -uguccacgu cagcacccu- -aaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-cug-u 3061 g-augga--- ---------- ---------- --(cucug-- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gc ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.hai.YE 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013181 LOCUS AB013181 2391 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, isolate Yuge Ehime. ACCESSION AB013181 NID g3298492 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra haitanensis gametophyte thallus DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2391 /organism="Porphyra haitanensis" /note="collection_site: Yuge Ehime" /db_xref="taxon:76159" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2391 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..1807 /note="putative" /product="SSU rRNA" intron 1808..2361 /note="group I intron; putative" exon 2362..2391 /note="putative" /product="SSU rRNA" BASE COUNT 600 a 526 c 681 g 584 t BASE COUNT 462 a 393 c 497 g 485 t 1436 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcuu--(-cu 1921 aauuca---- -------)-- -uguccacgu cagcacccu- -aaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-Aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-cug-u 3061 g-augga--- ---------- ---------- --(cucug-- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gc ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR053.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136427 LOCUS AF136427 1748 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate SSR053 18S ribosomal RNA gene, partial sequence. ACCESSION AF136427 NID g5579326 VERSION AF136427.1 GI:5579326 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1748) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1748) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1748 /organism="Porphyra sp." /isolate="SSR053" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA <1..>1748 /product="18S ribosomal RNA" BASE COUNT 437 a 364 c 476 g 470 t 1 others BASE COUNT 437 a 364 c 476 g 470 t 1526 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- --cac--ua- n-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggua--(-cu 1921 auuuaa---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AA- 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.kat.KY 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ACCESSION No information KEYWORDS No information. SOURCE Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ORGANISM Porphyra katadae. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013184 LOCUS AB013184 3024 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra katadae gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013184 NID g3298495 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra katadae gametophyte thallus DNA. ORGANISM Porphyra katadae Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3024 /organism="Porphyra katadae" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76161" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3024 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1169 /note="putative" exon 1170..2406 /note="putative" /product="SSU rRNA" intron 2407..2994 /note="group I intron; putative" exon 2995..3024 /note="putative" /product="SSU rRNA" BASE COUNT 758 a 677 c 856 g 733 t BASE COUNT 459 a 389 c 498 g 489 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gaca--(-cu 1921 auuuga---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.kunied 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra kuniedai. str. pk-50. ACCESSION No information KEYWORDS No information. SOURCE Porphyra kuniedai. str. pk-50. ORGANISM Porphyra kuniedai. REFERENCE 1 (bases 1 to 3004) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from seaweed Porphyra kuniedai JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123051 LOCUS AF123051 1785 bp DNA PLN 29-APR-1999 DEFINITION Porphyra kuniedai 18S ribosomal RNA gene, partial sequence. ACCESSION AF123051 NID g4704733 VERSION AF123051.1 GI:4704733 KEYWORDS . SOURCE Porphyra kuniedai. ORGANISM Porphyra kuniedai Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1785) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from seaweed Porphyra kuniedai JOURNAL Unpublished REFERENCE 2 (bases 1 to 1785) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (22-JAN-1999) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1785 /organism="Porphyra kuniedai" /strain="pk-50" /db_xref="taxon:91199" rRNA <1..>1785 /product="18S ribosomal RNA" BASE COUNT 448 a 381 c 487 g 469 t BASE COUNT 448 a 381 c 487 g 469 t 1488 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCCCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCCCG(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGAAGG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCAAG-|CU GGAAUAGGGU A|UAUUAA-A GUUG---UGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGCGU|G GAGCCUGCG| GCCUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aggaaggauu gac-aga(uu -gauag-c)u 2161 cuuucuugau ucuguggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGG- 2281 (UUGC)-CUU GUCAGG(UUG AUU)CCGGUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUG-ac --|gauug-c u----(uugg ---------- 2401 ---------- ---------- -----)---c aguu-g-gc| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ---cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UUG-GC(--- ---------- ----GUCUA- 2641 )GCCAAUGGA AGUAUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGG-C 2701 CGCACGCGCG GCUA-CACUG AUACGU---- ---------- ----(----) [uc-aaca-- 2761 ---------- -|-------- ---------- ---------- ---------- |aguuccu-a 2821 ggcc(---ga a-)ggucc-g gguaauc-uu ugaaa]---- ---------- ------ccgu 2881 auc-gUGAUG GGGAUAGAAC AU(UGCAAUU A)UUGU-UCU UCAACGAGGA AUGCCUAGUA 2941 AGCGU-GAG( UCAUCAU)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGUGCCggug aag-aguucg gau-uggag- uc-u-ugg-c 3061 u-agg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cc-ua -gcc----cu ga-uu----- ccg-agaa|g uucuuuaaac 3181 ccucccguuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.leucos 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra leucosticta clone 9. ACCESSION No information KEYWORDS No information. SOURCE Porphyra leucosticta clone 9. ORGANISM Porphyra leucosticta clone 9. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26199 LOCUS PTEFRB 1835 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra leucosticta DNA fragment. ACCESSION L26199 NID g507793 KEYWORDS PCR amplified. SOURCE Porphyra leucosticta DNA. ORGANISM Porphyra leucosticta Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1835) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1835 /organism="Porphyra leucosticta" /db_xref="taxon:35146" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1809..1835 /standard_name="PCR primer" /note="putative" BASE COUNT 462 a 395 c 498 g 480 t BASE COUNT 462 a 395 c 498 g 480 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- ucu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.miniat 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra miniata. ACCESSION No information KEYWORDS No information. SOURCE Porphyra miniata. ORGANISM Porphyra miniata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26200 LOCUS PTEFRC 1836 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra miniata DNA fragment. ACCESSION L26200 NID g507794 KEYWORDS PCR amplified. SOURCE Porphyra miniata DNA. ORGANISM Porphyra miniata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1836) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1836 /organism="Porphyra miniata" /db_xref="taxon:35147" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1810..1836 /standard_name="PCR primer" /note="putative" BASE COUNT 457 a 381 c 506 g 492 t BASE COUNT 457 a 381 c 506 g 492 t 1437 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guaa-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugggaa<-- --cuuu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cgcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 GU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-GUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 aauuga---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-agg(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUGUGGA GGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggcuu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cg-u-cug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ug-cc----- aug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.onoi 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra onoi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra onoi. ORGANISM Porphyra onoi. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015794 LOCUS AB015794 2331 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra onoi gene for small subunit rRNA, partial sequence. ACCESSION AB015794 NID g3986216 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra onoi DNA. ORGANISM Porphyra onoi Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2331) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2331 /organism="Porphyra onoi" /db_xref="taxon:78445" rRNA join(<1..554,1112..>2331) /product="small subunit rRNA" primer_bind 1..22 intron 555..1111 /note="intron-like structure" primer_bind 2312..2331 BASE COUNT 598 a 519 c 642 g 572 t BASE COUNT 453 a 386 c 476 g 469 t 1489 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CUAACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|C UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACCAACGACA CCUCCU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-ACGU-gc --|gcgca-u g----(ccau ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGUCCCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauu-aau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.pselin.1 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra pseudolinearis. subsp. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015793 LOCUS AB015793 1788 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, partial sequence. ACCESSION AB015793 NID g3986215 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra pseudolinealis DNA. ORGANISM Porphyra pseudolinearis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1788) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1788 /organism="Porphyra pseudolinearis" /db_xref="taxon:81939" primer_bind 1..22 rRNA <1..>1788 /product="small subunit rRNA" primer_bind 1769..1788 BASE COUNT 447 a 381 c 490 g 470 t BASE COUNT 447 a 381 c 490 g 470 t 1485 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAG------- -------UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuc uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cgu-ua- c-u>ACUUGG -AUAUCCGUA G(U-AAUC)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gucucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( AUA-UGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GU AAGGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGGGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaca---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaugaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u gc---(uuu- ---------- 2401 ---------- ---------- -----)--gc acug-u-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUACGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUC---- ---------- ----(----) [uc-aacgag 2761 -uuucaccug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gggc 2881 auc-gUGAUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AG-( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- gu-g-aag-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----gg aa-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.pseli.TT 3273 bp RNA RNA 10-JUL-1998 DEFINITION Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013185 LOCUS AB013185 2983 bp DNA PLN 10-JUL-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, isolate Tohaku Tottori. ACCESSION AB013185 NID g3298496 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra pseudolinealis gametophyte thallus DNA. ORGANISM Porphyra pseudolinealis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2983 /organism="Porphyra pseudolinealis" /note="collection_site: Tohaku Tottori" /db_xref="taxon:76162" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2983 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1135 /note="putative" exon 1136..2372 /note="putative" /product="SSU rRNA" intron 2373..2953 /note="group I intron; putative" exon 2954..2983 /note="putative" /product="SSU rRNA" BASE COUNT 754 a 658 c 835 g 736 t BASE COUNT 457 a 389 c 503 g 486 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuc uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cgu-ua- c-u>ACUUGG -AUAUCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gucucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( AUAUGGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGUGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaca---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaugaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u gc---(uuu- ---------- 2401 ---------- ---------- -----)--gc acug-u-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUACGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUC---- ---------- ----(----) [uc-aacgag 2761 -uuucaccug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gggc 2881 auc-gUGAUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- gu-g-aag-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----gg aa-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.pselin.2 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra pseudolinearis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS Hong,Y.K. TITLE pseudolinearis Nucleotide sequence of the 18s rDNA from Porphyra JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF116913 LOCUS AF116913 1799 bp DNA PLN 29-APR-1999 DEFINITION Porphyra pseudolinearis 18S ribosomal RNA gene, partial sequence. ACCESSION AF116913 NID g4704699 VERSION AF116913.1 GI:4704699 KEYWORDS . SOURCE Porphyra pseudolinearis. ORGANISM Porphyra pseudolinearis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from Porphyra pseudolinearis JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (29-DEC-1998) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1799 /organism="Porphyra pseudolinearis" /strain="pk-48" /db_xref="taxon:81939" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 449 a 378 c 496 g 476 t BASE COUNT 449 a 378 c 496 g 476 t 1474 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugagaa<-- ---cac-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|-CUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U--CG|GAGA GGGAGCC(UG AG-AAAC)GG -UACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 -ACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)UCU|U -AUCGA-GU- AUC>CAUUGG AG|GGCAAGG UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCG- A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--CC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuuaa---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG(ACGGA AGGGCACCAC -CAGGAGU|G GAGCGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau cuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g-----cua- ---------- 2401 ---------- ---------- -----)--gc acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |caguccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCC-UU|UGU -CACACCGCC 3001 UG-CGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----c gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGG-U- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yez.OM 3273 bp RNA RNA 17-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013178 LOCUS AB013178 2858 bp DNA PLN 17-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Ogatsu Miyagi. ACCESSION AB013178 NID g3298489 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2858 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2858 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2319 /note="putative" /product="SSU rRNA" intron 2320..2828 /note="group I intron; putative" exon 2829..2858 /note="putative" /product="SSU rRNA" BASE COUNT 729 a 638 c 812 g 679 t BASE COUNT 460 a 392 c 497 g 483 t 1441 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.BRU107.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136429 LOCUS AF136429 476 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate BRU107 18S ribosomal RNA gene, partial sequence. ACCESSION AF136429 NID g5532397 VERSION AF136429.1 GI:5532397 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 476) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 476) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..476 /organism="Porphyra sp." /isolate="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>476 /product="18S ribosomal RNA" BASE COUNT 108 a 115 c 127 g 126 t BASE COUNT 108 a 115 c 127 g 126 t 2797 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~~~~|~ ~~~~~|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuag u|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaccuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- ca-c-ccg-u 3061 g-agggac-- ---------- ---------- --(auuc--- -)-------- ---------- 3121 ---------- --guccu-ga -acg----uu ug-uc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.GRB108.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136430 LOCUS AF136430 480 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate GRB108 18S ribosomal RNA gene, partial sequence. ACCESSION AF136430 NID g5532398 VERSION AF136430.1 GI:5532398 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 480) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 480) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..480 /organism="Porphyra sp." /isolate="GRB108" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>480 /product="18S ribosomal RNA" BASE COUNT 108 a 105 c 125 g 139 t 3 others BASE COUNT 108 a 105 c 125 g 139 t 2796 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgua-u y----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ua-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuu- -|-------- ---------- ---------- ---------- |uuguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-uaugg- cg-u-gag-u 3061 g-augg---- ---------- ---------- --(aumuc-- -)-------- ---------- 3121 ---------- ----cca-ug -aca----gc ug-cc----- aug-maaa|g uucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD018.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136434 LOCUS AF136434 485 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate LGD018 18S ribosomal RNA gene, partial sequence. ACCESSION AF136434 NID g5532402 VERSION AF136434.1 GI:5532402 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..485 /organism="Porphyra sp." /isolate="LGD018" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>485 /product="18S ribosomal RNA" BASE COUNT 108 a 110 c 130 g 137 t BASE COUNT 108 a 110 c 130 g 137 t 2788 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(auuu--- -)-------- ---------- 3121 ---------- --gcucu-ga -agg----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaccauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD030.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136432 LOCUS AF136432 495 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate LGD030 18S ribosomal RNA gene, partial sequence. ACCESSION AF136432 NID g5532400 VERSION AF136432.1 GI:5532400 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 495) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 495) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..495 /organism="Porphyra sp." /isolate="LGD030" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>495 /product="18S ribosomal RNA" BASE COUNT 115 a 113 c 129 g 138 t BASE COUNT 115 a 113 c 129 g 138 t 2778 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~~UA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u u----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacau- -|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugcucg gau-ugugg- cu-u-gcg-u 3061 g-augg---- ---------- ---------- --(aucuc-- -)-------- ---------- 3121 ---------- ----cca-ua -acg----ua cg-cc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.PAP052.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136435 LOCUS AF136435 512 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate PAP052 18S ribosomal RNA gene, partial sequence. ACCESSION AF136435 NID g5532403 VERSION AF136435.1 GI:5532403 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 512) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 512) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..512 /organism="Porphyra sp." /isolate="PAP052" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>512 /product="18S ribosomal RNA" BASE COUNT 123 a 116 c 133 g 140 t BASE COUNT 123 a 116 c 133 g 140 t 2761 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGA-ga --|augua-u g----(cuug cacuuucucg 2401 agccgcgaga acuucgcaag -----)---- acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacaaa u|-------- ---------- ---------- ---------- |acguccu-g 2821 gguu(--gga a-)uccuc-g gguaaucuuu ugaau]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAACAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGAUCCgaug aaa-uggaug gau-ccgag- uugg-guguu 3061 c-cugg---- ---------- ---------- --(cagg--- -)-------- ---------- 3121 ---------- ----cca-ga -gca----ca cg-cg----- acg-aaaa|g uucaguaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.RAK049.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136425 LOCUS AF136425 2835 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate RAK049 18S ribosomal RNA gene, partial sequence. ACCESSION AF136425 NID g5579324 VERSION AF136425.1 GI:5579324 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2835 /organism="Porphyra sp." /isolate="RAK049" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA join(<1..546,1088..>2229) /product="18S ribosomal RNA" intron 547..1087 /note="putative group I" intron 2230..>2835 /note="putative group I" BASE COUNT 725 a 639 c 813 g 658 t BASE COUNT 449 a 383 c 487 g 465 t 1489 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- --caa--ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GGA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuu)AGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGUGG( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 aauaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.RAK049.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136437 LOCUS AF136437 482 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate RAK049 18S ribosomal RNA gene, partial sequence. ACCESSION AF136437 NID g5532405 VERSION AF136437.1 GI:5532405 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 482) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 482) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..482 /organism="Porphyra sp." /isolate="RAK049" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>482 /product="18S ribosomal RNA" BASE COUNT 106 a 113 c 131 g 132 t BASE COUNT 106 a 113 c 131 g 132 t 2791 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.ROS054.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136438 LOCUS AF136438 485 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate ROS054 18S ribosomal RNA gene, partial sequence. ACCESSION AF136438 NID g5532406 VERSION AF136438.1 GI:5532406 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..485 /organism="Porphyra sp." /isolate="ROS054" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>485 /product="18S ribosomal RNA" BASE COUNT 108 a 110 c 129 g 138 t BASE COUNT 108 a 110 c 129 g 138 t 2788 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(aucc--- -)-------- ---------- 3121 ---------- --gcucu-ga -uug----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR053.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136439 LOCUS AF136439 483 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate SSR053 18S ribosomal RNA gene, partial sequence. ACCESSION AF136439 NID g5532407 VERSION AF136439.1 GI:5532407 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..483 /organism="Porphyra sp." /isolate="SSR053" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>483 /product="18S ribosomal RNA" BASE COUNT 106 a 109 c 133 g 135 t BASE COUNT 106 a 109 c 133 g 135 t 2790 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR091.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136440 LOCUS AF136440 483 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate SSR091 18S ribosomal RNA gene, partial sequence. ACCESSION AF136440 NID g5532408 VERSION AF136440.1 GI:5532408 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..483 /organism="Porphyra sp." /isolate="SSR091" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>483 /product="18S ribosomal RNA" BASE COUNT 111 a 115 c 126 g 131 t BASE COUNT 111 a 115 c 126 g 131 t 2790 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacaag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- cc-c-uca-c 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----uu ug-cc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.GRB146 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136431 LOCUS AF136431 470 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate GRB146 18S ribosomal RNA gene, partial sequence. ACCESSION AF136431 NID g5532399 VERSION AF136431.1 GI:5532399 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 470) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 470) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..470 /organism="Porphyra sp." /isolate="GRB146" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>470 /product="18S ribosomal RNA" BASE COUNT 106 a 106 c 121 g 137 t BASE COUNT 106 a 106 c 121 g 137 t 2803 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgua-u c----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ua-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuu- -|-------- ---------- ---------- ---------- |uuguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-uaugg- cg-u-gag-u 3061 g-augg---- ---------- ---------- --(auauc-- -)-------- ---------- 3121 ---------- ----cca-ug -aca----gc ug-cc----- aug-aaaa|g uucauuaaau 3181 cuuaucau~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD161 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136433 LOCUS AF136433 484 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate LGD161 18S ribosomal RNA gene, partial sequence. ACCESSION AF136433 NID g5532401 VERSION AF136433.1 GI:5532401 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 484) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 484) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..484 /organism="Porphyra sp." /isolate="LGD161" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>484 /product="18S ribosomal RNA" BASE COUNT 110 a 109 c 129 g 136 t BASE COUNT 110 a 109 c 129 g 136 t 2789 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(aauu--- -)-------- ---------- 3121 ---------- --gcucu-ga -agg----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaccauuu agAGGAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.lill.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra lilliputiana.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136436 LOCUS AF136436 483 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra lilliputiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF136436 NID g5532404 VERSION AF136436.1 GI:5532404 KEYWORDS . SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..483 /organism="Porphyra lilliputiana" /db_xref="taxon:99748" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>483 /product="18S ribosomal RNA" BASE COUNT 109 a 114 c 130 g 130 t BASE COUNT 109 a 114 c 130 g 130 t 2790 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sp.SHH 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017077 LOCUS AB017077 1631 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra sp. DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017077 NID g3510353 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra sp. gametophyte individual thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1631) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1631 /organism="Porphyra sp." /note="collection_site: Shinori Hakodate Hokkaido" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,1186..1215) /note="putative" /product="small subunit ribosomal RNA" intron 219..1185 /note="group I intron; putative" misc_feature 1216..1575 /note="ITS1; putative" rRNA 1576..>1631 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 400 a 404 c 440 g 387 t BASE COUNT 61 a 59 c 64 g 64 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcug- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.B 3273 bp RNA RNA 16-JUL-1994 DEFINITION Porphyra spiralis B. str. PSA-B/Ubatuba, variety amplifolia. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis B. str. PSA-B/Ubatuba, variety amplifolia. ORGANISM Porphyra spiralis B. REFERENCE 1 (bases 1 to 3004) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE rRNA genes of the marine red alga Porphyra spiralis var. amplifolia Variant forms of a group I intron in nuclear small-subunit JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26175 LOCUS PTEPSAB 821 bp DNA PLN 16-JUL-1994 DEFINITION Porphyra spiralis var. amplifolia DNA sequence with partial cds. ACCESSION L26175 NID g438855 KEYWORDS . SOURCE Porphyra spiralis (strain PSA-B/Ubatuba, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 821) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) MEDLINE 94224117 FEATURES Location/Qualifiers source 1..821 /organism="Porphyra spiralis" /strain="PSA-B/Ubatuba" /variety="amplifolia" /db_xref="taxon:31350" CDS join(1..47,791..821) /partial /codon_start=1 /label=ORF /db_xref="PID:g438856" /translation="IIKSYHLEEGEVVTRFSVGEPAEGSS" exon 1..47 intron 48..790 /evidence=experimental /label=Group_I_intron exon 791..821 BASE COUNT 218 a 189 c 237 g 177 t BASE COUNT 27 a 12 c 19 g 20 t 3195 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ aucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUUU CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.D 3273 bp RNA RNA 16-JUL-1994 DEFINITION Porphyra spiralis D.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis D. ORGANISM Porphyra spiralis D. REFERENCE 1 (bases 1 to 3004) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26176 DEFINITION Porphyra spiralis var. amplifolia DNA sequence. DEFINITION Porphyra spiralis var. amplifolia DNA sequence. ACCESSION L26176 NID g438857 KEYWORDS . SOURCE Porphyra spiralis (individual_isolate PSA-D/Sao Sebastiao, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 985) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) MEDLINE 94224117 FEATURES Location/Qualifiers source 1..985 /organism="Porphyra spiralis" /isolate="PSA-D/Sao Sebastiao" /variety="amplifolia" /db_xref="taxon:31350" exon 1..46 intron 47..954 /evidence=experimental /label=Group_I_intron exon 955..985 BASE COUNT 253 a 225 c 285 g 222 t BASE COUNT 27 a 12 c 19 g 19 t 3196 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ aucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.K4 3273 bp RNA RNA 17-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yashida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029881 LOCUS AB029881 3994 bp DNA PLN 17-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Kawaura-4. ACCESSION AB029881 NID g5525093 VERSION AB029881.1 GI:5525093 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; partial; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Kawaura-4, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcrib ed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Kawaura-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1007 a 915 c 1107 g 965 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.K5 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029882 LOCUS AB029882 3355 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Kawaura-5. ACCESSION AB029882 NID g5509936 VERSION AB029882.1 GI:5509936 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRAN; partial; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Kawaura-5, isolate:Kawaura Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3355) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3355) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3355 /organism="Porphyra tenera" /isolate="Kawaura Kumamoto" /strain="Kawaura-5" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,903..2138,2922..2951) /product="18S rRNA" intron 569..902 /note="putative" exon 903..2138 /note="putative" /product="ssu rRNA" intron 2139..2921 /note="group I intron;putative" exon 2922..2951 /note="putative" /product="ssu rRNA" misc_RNA 2952..3309 /note="ITS 1; putative" rRNA 3310..3355 /note="putative" /product="5.8S rRNA" BASE COUNT 845 a 756 c 929 g 824 t 1 others BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.KK 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013176 LOCUS AB013176 3589 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Kawaura Kumamoto. ACCESSION AB013176 NID g3298487 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3589 /organism="Porphyra tenera" /note="collection_site: Kawaura Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3589 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3559 /note="group I intron; putative" exon 3560..3589 /note="putative" /product="SSU rRNA" BASE COUNT 906 a 808 c 1019 g 856 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.M3 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029883 LOCUS AB029883 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-3. ACCESSION AB029883 NID g5509937 VERSION AB029883.1 GI:5509937 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-3, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.M4 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029884 LOCUS AB029884 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-4. ACCESSION AB029884 NID g5509938 VERSION AB029884.1 GI:5509938 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-4, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.SK 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013175 LOCUS AB013175 3766 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Shinwa Kumamoto. ACCESSION AB013175 NID g3298480 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3766 /organism="Porphyra tenera" /note="collection_site: Shinwa Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3766 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3736 /note="group I intron; putative" exon 3737..3766 /note="putative" /product="SSU rRNA" BASE COUNT 942 a 858 c 1067 g 899 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.S2 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029879 LOCUS AB029879 4168 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-2. ACCESSION AB029879 NID g5509934 VERSION AB029879.1 GI:5509934 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-2, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..4168 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-2" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3736..3765) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3735 /note="group I intron;putative" exon 3736..3765 /note="putative" /product="ssu rRNA" misc_RNA 3766..4122 /note="ITS 1; putative" rRNA 4123..>4168 /note="putative" /product="5.8S rRNA" BASE COUNT 1039 a 965 c 1157 g 1007 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.S3 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029880 LOCUS AB029880 3994 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-3. ACCESSION AB029880 NID g5509935 VERSION AB029880.1 GI:5509935 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-3, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1006 a 916 c 1107 g 965 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.T1 3273 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera strain T-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain T-1. ORGANISM Porphyra tenera strain T-1. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D86237 LOCUS D86237 2339 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86237 NID g1881402 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T-1) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2339) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2339 /organism="Porphyra tenera" /strain="T-1" rRNA 1..2339 /product="18S rRNA" BASE COUNT 601 a 518 c 649 g 571 t BASE COUNT 459 a 389 c 492 g 483 t 1450 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUUGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-- 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.te.TU3 3273 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera strain TU-3.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain TU-3. ORGANISM Porphyra tenera strain TU-3. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL :0543-34-9834) Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D86236 LOCUS D86236 2340 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86236 NID g1881401 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:TU-3) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2340) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2340 /organism="Porphyra tenera" /strain="TU-3" rRNA 1..2340 /product="18S rRNA" BASE COUNT 601 a 521 c 649 g 569 t BASE COUNT 460 a 393 c 491 g 479 t 1450 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)AC|AUCUU CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -AAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.T8 3273 bp RNA RNA 13-FEB-1997 DEFINITION Porphyra tenera strain T8.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain T8. ORGANISM Porphyra tenera strain T8. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB000964 LOCUS AB000964 2302 bp DNA PLN 13-FEB-1997 DEFINITION Red algae 18S rRNA gene, partial sequence. ACCESSION AB000964 NID g1841309 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T8) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2302) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA sequence JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2302 /organism="Porphyra tenera" /strain="T8" rRNA 1..2302 /partial /standard_name="18S rRNA gene" misc_feature 551..1061 /note="intron-like structure" BASE COUNT 587 a 505 c 644 g 566 t BASE COUNT 452 a 381 c 484 g 476 t 1480 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~CAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAA)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu guAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUA~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.tenuip 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra tenuipedalis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenuipedalis. ORGANISM Porphyra tenuipedalis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015797 LOCUS AB015797 2299 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra tenuipedalis gene for small subunit rRNA, partial sequence. ACCESSION AB015797 NID g3986219 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra tenuipedalis DNA. ORGANISM Porphyra tenuipedalis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2299) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2299 /organism="Porphyra tenuipedalis" /db_xref="taxon:78446" rRNA join(<1..555,1066..>2299) /product="small subunit rRNA" primer_bind 1..22 intron 556..1065 /note="intron-like structure" primer_bind 2280..2299 BASE COUNT 586 a 509 c 644 g 560 t BASE COUNT 453 a 382 c 484 g 470 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAG------- -------UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cac-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 G-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- gaca--(-cu 1921 auuuga---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGGGAAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 aguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-cgcgg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezoen 3273 bp RNA RNA 19-DEC-1995 DEFINITION Porphyra yezoensis.; . ACCESSION D79976 KEYWORDS . SOURCE Porphyra yezoensis. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Kitade,Y., Maruyama,T. and Saga,N. TITLE Rhodophyta) based on the 18S rDNA Phylogenetic position of Porphyra yezoensis (Bangiales, JOURNAL J. Mar. Biotechnol. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D79976 Submitted (12-Dec-1995) to DDBJ by: Naotsune Saga Dept. of Marine Science Tokai University Orido 3-20-1 Shimizu, Shizuoka 424 Japan Phone: 0543-34-0411 E-mail: nsaga@simizugw.cc.u-tokai.ac.jp Fax: 0543-34-9834. NCBI gi: 1125635 BASE COUNT 458 a 395 c 491 g 479 t 1450 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUC CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(CCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yez.HH 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013177 LOCUS AB013177 2349 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Hakodate Hokkaido. ACCESSION AB013177 NID g3298488 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2349 /organism="Porphyra yezoensis" /note="collection_site: Hakodate Hokkaido" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 precursor_RNA <1..>2349 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2349 /note="putative" /product="SSU rRNA" BASE COUNT 601 a 521 c 655 g 572 t BASE COUNT 460 a 392 c 497 g 483 t 1441 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ampl.3 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra amplissima.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra amplissima. ORGANISM Porphyra amplissima. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015791 LOCUS AB015791 1785 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra amplissima gene for small subunit rRNA, partial sequence. ACCESSION AB015791 NID g3986213 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra amplissima DNA. ORGANISM Porphyra amplissima Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1785) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1785 /organism="Porphyra amplissima" /db_xref="taxon:36332" primer_bind 1..22 rRNA <1..>1785 /product="small subunit rRNA" primer_bind 1766..1785 BASE COUNT 449 a 378 c 488 g 470 t BASE COUNT 449 a 378 c 488 g 470 t 1488 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu uu-------- 121 ---auac-uc guaa-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugggga<-- --cuuu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cgcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGAC-- 661 -|----U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CACAGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuuga---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUGUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuacacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)gguacug gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaua aaa-uguccg gau-ugugg- cg-c-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----ga ug-cc----- gcg-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.varieg 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra variegata.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra variegata. ORGANISM Porphyra variegata. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015792 LOCUS AB015792 1789 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra variegata gene for small subunit rRNA, partial sequence. ACCESSION AB015792 NID g3986214 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra variegata DNA. ORGANISM Porphyra variegata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1789) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1789 /organism="Porphyra variegata" /db_xref="taxon:78444" primer_bind 1..22 rRNA <1..>1789 /product="small subunit rRNA" primer_bind 1770..1789 BASE COUNT 450 a 377 c 492 g 470 t BASE COUNT 450 a 377 c 492 g 470 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu uu-------- 121 ---auac-uc guaa-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugggga<-- --cuuu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cgcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuuga---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUGUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuacacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaua aaa-uguccg gau-ugugg- cg-c-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----ga ug-cc----- gcg-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.subo.2 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra suborbiculata.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015796 LOCUS AB015796 2279 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, partial sequence. ACCESSION AB015796 NID g3986218 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra suborbiculata DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2279) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2279 /organism="Porphyra suborbiculata" /db_xref="taxon:76158" rRNA join(<1..555,1046..>2279) /product="small subunit rRNA" primer_bind 1..22 intron 556..1045 /note="intron-like structure" primer_bind 2260..2279 BASE COUNT 582 a 494 c 643 g 560 t BASE COUNT 452 a 378 c 488 g 471 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |c-gcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.caroli 3273 bp RNA RNA 25-APR-1999 DEFINITION Porphyra carolinensis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra carolinensis. ORGANISM Porphyra carolinensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Klein,A.S., Taylor,H.A., West,A.L., Wallace,A.L., Teasdale,B., Cain,D.F., Neefus,C.D., Yarish,C. and Mathieson,A.C. TITLE Porphyra of coastal New England Sequence variation in plastid-encoded rbcL and nuclear small subunit RNA genes applied to species identification for JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF133792 LOCUS AF133792 1547 bp DNA PLN 25-APR-1999 DEFINITION Porphyra carolinensis 18S ribosomal RNA, partial sequence. ACCESSION AF133792 NID g4680366 VERSION AF133792.1 GI:4680366 KEYWORDS . SOURCE Porphyra carolinensis. ORGANISM Porphyra carolinensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1547) AUTHORS Klein,A.S., Taylor,H.A., West,A.L., Wallace,A.L., Teasdale,B., Cain,D.F., Neefus,C.D., Yarish,C. and Mathieson,A.C. TITLE Sequence variation in plastid-encoded rbcL and nuclear small subunit RNA genes applied to species identification for Porphyra of coastal New England JOURNAL Unpublished REFERENCE 2 (bases 1 to 1547) AUTHORS Wallace,A.L. TITLE Direct Submission JOURNAL Submitted (09-MAR-1999) Biochemistry and Molecular Biology, University of New Hampshire, Rudman Hall, Durham, NH 03824, USA FEATURES Location/Qualifiers source 1..1547 /organism="Porphyra carolinensis" /db_xref="taxon:31348" rRNA <1..>1547 /product="18S ribosomal RNA" BASE COUNT 369 a 439 c 334 g 405 t BASE COUNT 272 a 217 c 285 g 281 t 2218 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~G 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-C-GC-ACU ACUGC(-GAA A)GC|AUCUG CC-AU|GGAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU --CGAAGAC- G(A-UCAG-A -U-AC)CGUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|--GGGA Uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaG~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~(-~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~]~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~~| ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)-~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~))~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Porphy.sp. 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra sp. str. pk-723. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. str. pk-723. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Hong,Y.K. TITLE Nucletide sequence of the 18s rDNA from Porphyra sp JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117306 LOCUS AF117306 1799 bp DNA PLN 29-APR-1999 DEFINITION Porphyra sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF117306 NID g4704701 VERSION AF117306.1 GI:4704701 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Nucletide sequence of the 18s rDNA from Porphyra sp JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (30-DEC-1998) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1799 /organism="Porphyra sp." /strain="pk-723" /db_xref="taxon:2790" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 451 a 376 c 492 g 480 t BASE COUNT 451 a 376 c 492 g 480 t 1474 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uu-)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UCUUGGU-G( CCAGCAGCC- 1021 |GCGGUUA)U UCCA-G-|CU CCAAUAG-GU A|UAUUAA-A GUUG--UUGC AG|UUA-AAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G--AA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-auggu--- ---------- ---------- --(uuca--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.lill.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra lilliputiana.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana. REFERENCE 1 (bases 1 to 2340) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136424 LOCUS AF136424 2804 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra lilliputiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF136424 NID g5579323 VERSION AF136424.1 GI:5579323 KEYWORDS . SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2804 /organism="Porphyra lilliputiana" /db_xref="taxon:99748" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 47E" rRNA join(<1..546,1039..>2277) /product="18S ribosomal RNA" intron 547..1038 /note="putative group I" intron 2278..2804 /note="putative group I" BASE COUNT 720 a 613 c 790 g 668 t 13 others BASE COUNT 450 a 372 c 488 g 473 t 1490 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaaguacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGNUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- --cuu--ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAA-UCGUA ACAGGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sub.KY 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013180 LOCUS AB013180 2329 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013180 NID g3298491 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra suborbiculata gametophyte DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2329 /organism="Porphyra suborbiculata" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76158" /dev_stage="gametophyte" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2329 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1062 /note="putative" exon 1063..2329 /note="putative" /product="SSU rRNA" BASE COUNT 593 a 505 c 658 g 573 t BASE COUNT 461 a 387 c 501 g 486 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.GRB108.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136420 LOCUS AF136420 2845 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate GRB108 18S ribosomal RNA gene, partial sequence. ACCESSION AF136420 NID g5579319 VERSION AF136420.1 GI:5579319 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2845 /organism="Porphyra sp." /isolate="GRB108" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Otago 45 08S, 171 58E" rRNA join(<1..549,1109..>2336) /product="18S ribosomal RNA" intron 550..1108 /note="putative group I" intron 2337..>2845 /note="putative group I" BASE COUNT 740 a 616 c 796 g 692 t 1 others BASE COUNT 462 a 356 c 470 g 480 t 1505 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaaau cu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggcga-g- ggau--(-ca 1921 guugaa---- -------)-- -ugaucucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgua-u u----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ua-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuu- -|-------- ---------- ---------- ---------- |uuguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGSC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-uaugg- cg-u-gag-u 3061 g-augg---- ---------- ---------- --(aucuc-- -)-------- ---------- 3121 ---------- ----cca-ug -aca----gc ug-cc----- aug-caaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD030.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136422 LOCUS AF136422 2382 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate LGD030 18S ribosomal RNA gene, partial sequence. ACCESSION AF136422 NID g5579321 VERSION AF136422.1 GI:5579321 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2382) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2382) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2382 /organism="Porphyra sp." /isolate="LGD030" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 48E" rRNA <1..>1777 /product="18S ribosomal RNA" intron 1778..2382 /note="putative group I" BASE COUNT 629 a 491 c 648 g 605 t 9 others BASE COUNT 460 a 358 c 472 g 476 t 1507 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~U|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCANGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaagu uu-------- 121 ---anac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguc 181 au-anuuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)G 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCNAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG NUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)UCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggcgg-g- gguu--(-ca 1921 guugaa---- -------)-- -ugaucccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u u----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacau- -|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugcucg gau-ugugg- cu-u-gcg-u 3061 g-augg---- ---------- ---------- --(aucuc-- -)-------- ---------- 3121 ---------- ----cca-ua -acg----ua cg-cc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.pur.Av 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra purpurea (Avonport, NS). ACCESSION No information KEYWORDS No information. SOURCE Porphyra purpurea (Avonport, NS). ORGANISM Porphyra purpurea (Avonport, NS). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26201 LOCUS PTEFRF 1839 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra purpurea DNA fragment. ACCESSION L26201 NID g507796 KEYWORDS PCR amplified. SOURCE Porphyra purpurea (strain Avonport) DNA. ORGANISM Porphyra purpurea Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1839) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1839 /organism="Porphyra purpurea" /strain="Avonport" /db_xref="taxon:2787" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1813..1839 /standard_name="PCR primer" /note="putative" BASE COUNT 465 a 384 c 498 g 492 t BASE COUNT 465 a 384 c 498 g 492 t 1434 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu cguuuucuuu 121 uuuguac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -ugccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGAUA-GG GG-GCCU(-- uuu)AGGUUU -U-CU-AAUC GGAAUGAGA| AGAAU(U-UA 961 AACC)UCU|C -ACCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCAUU| CGC-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGG-A-CU ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCUUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GAGA- Uuggcgg-g- gauu--(--u 1921 guugua---- -------)-- -ugaucccgu cagcauccu- -gcGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- gagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgua-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gc-aCUCUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAU-GC(--- ---------- ----GUCUA- 2641 )GUAUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 UGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -ucacacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguu(--uua u-)gaccu-g gguaaucuug ggaac]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGG-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-ugcuua gau-cuugg- gg-a-gcg-g 3061 c-cugga--- ---------- ---------- --(ggucaaa g)-------- ---------- 3121 ---------- ---ucca-gu -acg----ug aa-cc----- uug-aaaa|g aucauugaau 3181 cuuacccuuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS P.PAP052.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136423 LOCUS AF136423 1837 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate PAP052 18S ribosomal RNA gene, partial sequence. ACCESSION AF136423 NID g5579322 VERSION AF136423.1 GI:5579322 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1837) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1837) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1837 /organism="Porphyra sp." /isolate="PAP052" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Leigh, Northland 36 17S, 174 48E" rRNA <1..>1837 /product="18S ribosomal RNA" BASE COUNT 468 a 383 c 498 g 488 t BASE COUNT 468 a 383 c 498 g 488 t 1436 others ORIGIN 1 |~~~~~~~~~ ~~GGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaacc cu-------- 121 -cuauac-uu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacc<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uaa)CGGCCC -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)ACU|U -GUCGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GG|UAGU-C- 1681 GGGGGCAUU| CCU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|-UCUG -CAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggcgg-g- aga---(-uc 1921 ugguuu---- -------)-u -aggucccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GCAAC UUACCAGGUC [cgg-acag- aaugaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGA-ga --|augua-u g----(cuug cacuuucucg 2401 agccgcgaga acuucgcaag -----)---- acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacaaa u|-------- ---------- ---------- ---------- |acguccu-g 2821 gguu(--gga a-)uccuc-g gguaaucuuu ugaau]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAACAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGAUCCgaug aaa-uggaug gau-ccgag- uugg-guguu 3061 c-cugg---- ---------- ---------- --(cagg--- -)-------- ---------- 3121 ---------- ----cca-ga -gca----ca cg-cg----- acg-aaaa|g uucaguaaau 3181 cuuaucauuu agAGGAAGGA GAA--UCGUU ACAAGGUUU- CCGUUGG(UG AA)CCUGCAG 3241 AAGGAU~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umb.NM 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra umbilicalis. subsp. Porphyra umbilicalis isolate Nahant Mass.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis. subsp. Porphyra umbilicalis isolate Nahant Mass. ORGANISM Porphyra umbilicalis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013179 LOCUS AB013179 1818 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra umbilicalis gene for small subunit rRNA, isolate Nahant Mass. ACCESSION AB013179 NID g3298490 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra umbilicalis gametophyte thallus DNA. ORGANISM Porphyra umbilicalis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1818) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 1818) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1818 /organism="Porphyra umbilicalis" /note="collection_site: Nahant Mass" /db_xref="taxon:2786" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>1818 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..1818 /note="putative" /product="SSU rRNA" BASE COUNT 469 a 369 c 485 g 495 t BASE COUNT 469 a 369 c 485 g 495 t 1455 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- auu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguuc-(--- 1921 --aguu---- -------)ga augauccugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCCgaug aaa-uguucg gau-ugugg- cg-u-gcg-u 3061 g-augga--- ---------- ---------- --(uau---- -)-------- ---------- 3121 ---------- ---ccca-ua -gcg----ug cg-uc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umb.We 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra umbilicalis, isolate "Westport". ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis, isolate "Westport". ORGANISM Porphyra umbilicalis, isolate "Westport". REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L36049 LOCUS PTEWRRNA 1818 bp DNA PLN 31-AUG-1994 DEFINITION Porphyra umbilicalis small subunit ribosomal RNA (rDNA) gene. ACCESSION L36049 NID g533258 KEYWORDS PCR identification; ribosomal RNA; ribosomal RNA small subunit. SOURCE Porphyra umbilicalis (strain Westport (Nova Scotia)) DNA. ORGANISM Porphyra umbilicalis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1818) AUTHORS Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., Singh,R.K., Gutell,R.R. and Ragan,M.A. TITLE An investigation of order Bangiales (Bangiophycidae, Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1818 /organism="Porphyra umbilicalis" /strain="Westport (Nova Scotia)" /db_xref="taxon:2786" primer_bind complement(1..22) /note="putative" primer_bind 1793..1818 /note="putative" BASE COUNT 470 a 369 c 486 g 493 t BASE COUNT 470 a 369 c 486 g 493 t 1455 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -GUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GG A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- auu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-a- gguuc-(--- 1921 --aguu---- -------)ga augauccugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCCgaug aaa-uguucg gau-ugugg- cg-u-gcg-u 3061 g-augga--- ---------- ---------- --(uau---- -)-------- ---------- 3121 ---------- ---ccca-ua -gcg----ug cg-uc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 A-GGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD018.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136421 LOCUS AF136421 2822 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate LGD018 18S ribosomal RNA gene, partial sequence. ACCESSION AF136421 NID g5579320 VERSION AF136421.1 GI:5579320 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2822) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2822) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2822 /organism="Porphyra sp." /isolate="LGD018" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 48E" rRNA <1..>1813 /product="18S ribosomal RNA" intron 1814..2822 /note="putative group I" BASE COUNT 718 a 617 c 778 g 703 t 6 others BASE COUNT 461 a 374 c 486 g 481 t 1471 others ORIGIN 1 |~~~~~~~A- CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacgu uu-------- 121 ---auac-aa guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccc uugagaa<-- --cuc--ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau cc-aa|guuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aua)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAGC)CGU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG UCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uugguag-g- gaau--(-cg 1921 uauaaa---- -------)-c -cgacucugc cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UA-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(NCAA)G GCU-G-AAA- -CUUAANGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acna- aaggaugauu gan-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(auuu--- -)-------- ---------- 3121 ---------- --gcucu-ga -agg----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.acanth 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra acanthophora var. acanthophora. ACCESSION No information KEYWORDS No information. SOURCE Porphyra acanthophora var. acanthophora. ORGANISM Porphyra acanthophora var. acanthophora. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26197 LOCUS PTEFRA 1845 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra acanthophora DNA fragment. ACCESSION L26197 NID g507792 KEYWORDS PCR amplified. SOURCE Porphyra acanthophora (strain acanthophora) DNA. ORGANISM Porphyra acanthophora Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1845) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1845 /organism="Porphyra acanthophora" /strain="acanthophora" /db_xref="taxon:35145" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1819..1845 /standard_name="PCR primer" /note="putative" BASE COUNT 469 a 400 c 493 g 483 t BASE COUNT 469 a 400 c 493 g 483 t 1428 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgccu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---ccc-ca- c-u>ACUUGG -AUAGCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-C CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-u uua)CGGUCC -U-CU-AAUU GGAGUGAGA| ACAAU(U-UA 961 AAUU)CCU|U -AUCAA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggaaa-(--- 1921 --cacuu--- -------)uu augacuccgu cagcacccu- -auGG(-GAA A)CCA--AAG 1981 UU-cuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgua-u g----(cccg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAAUAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacaag 2761 -ucgcacuug a|-------- ---------- ---------- ---------- |caguccu-g 2821 gacc(--gga a-)ggcuc-g gguaaccuuu ugaaa]---- ---------- ------cugc 2881 auc-guGAUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCACUAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguucg gau-ugcgg- cu-c-ggg-u 3061 g-ugauggac ---------- ---------- --(uua---- -)-------- ---------- 3121 ---------- --gucca-ga -gca----cu ag-cc----- guu-agaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 GCACUGGC-- ---CGU~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR091.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136428 LOCUS AF136428 1752 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate SSR091 18S ribosomal RNA gene, partial sequence. ACCESSION AF136428 NID g5579327 VERSION AF136428.1 GI:5579327 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1752) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1752) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1752 /organism="Porphyra sp." /isolate="SSR091" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Otago 45 57S, 170 20E" rRNA <1..>1752 /product="18S ribosomal RNA" BASE COUNT 446 a 378 c 471 g 457 t BASE COUNT 446 a 378 c 471 g 457 t 1521 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguucca uugagaa<-- --cacu-uu- c-u>ACUUGG -AUAACCGUA G(G-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggcu--(-cu 1921 auacaa---- -------)-- -cgacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacaag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- cc-c-uca-c 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----uu ug-cc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.BRU107.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp. str. BRU107. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. str. BRU107. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS .A. TITLE sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136418,AF136419 LOCUS PSBRU107G1 744 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 5' sequence. ACCESSION AF136418 NID g5579316 VERSION AF136418.1 GI:5579316 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..744 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" rRNA join(<1..575,AF136419.1:469..>1712) /product="18S ribosomal RNA" intron 576..>744 /note="putative group I" BASE COUNT 200 a 150 c 191 g 192 t 11 others -------------------------------------------------------------------------- LOCUS PSBRU107G2 2269 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 3' sequence. ACCESSION AF136419 NID g5579317 VERSION AF136419.1 GI:5579317 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2269 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" intron <1..468 /note="putative group I" intron 1713..>2269 /note="putative group I" rRNA join(AF136418.1:<1..575,469..>1712) /product="18S ribosomal RNA" BASE COUNT 547 a 513 c 660 g 536 t 13 others BASE COUNT 456 a 380 c 492 g 477 t 1468 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GG-UAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacgu uu-------- 121 ---auac-aa guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguucca uugagaa<-- --caa--ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GGA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcag-g- gguu--(-cu 1921 uuuuaa---- -------)-- -cgacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuag u|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaccuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- ca-c-ccg-u 3061 g-agggac-- ---------- ---------- --(auuc--- -)-------- ---------- 3121 ---------- --guccu-ga -acg----uu ug-uc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.ROS054.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136426 LOCUS AF136426 1758 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate ROS054 18S ribosomal RNA gene, partial sequence. ACCESSION AF136426 NID g5579325 VERSION AF136426.1 GI:5579325 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1758) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1758) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1758 /organism="Porphyra sp." /isolate="ROS054" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA <1..>1758 /product="18S ribosomal RNA" BASE COUNT 447 a 370 c 475 g 466 t BASE COUNT 447 a 370 c 475 g 466 t 1515 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~UCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacgu uu-------- 121 ---auac-aa guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccc uugagaa<-- -cucuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau cc-aa|guuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CGU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG UCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uugguag-g- gaau--(-cg 1921 uauaaa---- -------)-c -cgacucugc cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UA-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acaa- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(aucc--- -)-------- ---------- 3121 ---------- --gcucu-ga -uug----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.OG1 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis OG-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis OG-1. ORGANISM Porphyra yezoensis OG-1. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017078 LOCUS AB017078 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-1. ACCESSION AB017078 NID g3510354 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-1) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-1" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,744..773) /note="putative" /product="small subunit ribosomal RNA" intron 219..743 /note="group I intron; putative" misc_feature 774..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 289 a 292 c 318 g 276 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.OG4 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017081 LOCUS AB017081 1170 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-4. ACCESSION AB017081 NID g3510357 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1170) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1170 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,733..762) /note="putative" /product="small subunit ribosomal RNA" intron 219..732 /note="group I intron; putative" misc_feature 763..1115 /note="ITS1; putative" rRNA 1116..>1170 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 287 a 287 c 316 g 280 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.nara 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis narawaensis cv. F6-1. ORGANISM Porphyra yezoensis narawaensis cv. F6-1. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017083 LOCUS AB017083 1176 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1 DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017083 NID g3510359 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (cultivar:F6-1) gametophyte vegetative DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1176) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1176 /organism="Porphyra yezoensis" /cultivar="F6-1" /note="forma: narawaensis" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="vegetative" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1121 /note="ITS1; putative" rRNA 1122..>1176 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 291 a 294 c 313 g 278 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.NA2 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-2.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-2. ORGANISM Porphyra yezoensis NA-2. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017075 LOCUS AB017075 1174 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-2. ACCESSION AB017075 NID g3510351 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-2) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1174) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1174 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-2" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1119 /note="ITS1; putative" rRNA 1120..1174 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 278 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.NA4 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-4.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-4. ORGANISM Porphyra yezoensis NA-4. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017076 LOCUS AB017076 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-4. ACCESSION AB017076 NID g3510352 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 279 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Porphy 3273 bp RNA RNA 08-JAN-1999 DEFINITION Porphyridiales. ACCESSION No information KEYWORDS No information. SOURCE Porphyridiales. ORGANISM Porphyridiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS D.grisea 3273 bp RNA RNA 24-JAN-191 DEFINITION Dixonielloa grisea. ACCESSION No information KEYWORDS No information. SOURCE Dixonielloa grisea. ORGANISM Dixonielloa grisea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26187 DIXONIELLA GRISEA, red algae from M.Ragan LOCUS DIXFRA 1800 bp ds-DNA PLN 30-JUN-1994 DEFINITION Dixoniella grisea DNA fragment. ACCESSION L26187 KEYWORDS PCR amplified. SOURCE Dixonielloa grisea DNA. ORGANISM Dixonielloa grisea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Porphyridiales; Porphyridiaceae. REFERENCE 1 (bases 1 to 1800) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507230 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1763..1800 /standard_name="PCR primer" /note="putative" source 1..1800 /organism="Dixonielloa grisea" /sequenced_mol="DNA" BASE COUNT 500 a 315 c 496 g 489 t BASE COUNT 499 a 311 c 493 g 486 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAG UCUUGUCUCA AA|GGUUAAG 61 CCAUGCAAUU GA-AAGU|-- -----|---- ---(----)[ uuaaguga-u uu-------- 121 --ucaac--u acga-a]--- --------|- --ACU|-GUG GACAGCUCAU UAAACcaguu 181 gu-uauuuau uugauag<-- --uaaa-ag- u-u>AAACGG AAUAUCCGCA G(U-AAUU)C 241 UGGGGUUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|auuu cugc|CCUAU 601 CAACUUUG-G AUUGUAGG-( GUAGUGG)-C CU-ACAAU|G G-UGA-UUAC |GGGUA-CGG 661 A|GGA-U(CA GG)GUCUGAU U-CCG|GAGA AGGCGCC(UU AA-AAAC)GG CGGCUACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGAUA-GU GU-GCUC(-- uuu)GAGUGU -A-CU-AAUU GGAAUGAGA| GAAAU(U-UA 961 AAUA)UGU|C -AACGA-UG- AAC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAGUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUCCA -GAG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGG-AAG- A-CGA-A-CU GGUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUGCCCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGCG CAAA--GAC- G(A-UUAG-A -GAC)C-GUU 1861 GUAGU|CCUA -ACC-AUAAA CUAUGCCGAC |CG|-GGGA- Ucagguu-u- aaa---(--- 1921 -cguuaa--- -------)-- --gaugaacu uggcaccca- -agGA(-GAA A)UCG---AG 1981 UU-uucgGGC |-U|CUGGGG -GGAGUAU-G GUU(GCAA)A GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AAAACAUCAC -CGGGCGU|G GAUUUUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GG-CUUUA|G UUGGU|GGA- 2281 (AUAA)-UCU GUCUGC(UUA AUU)GCGUUA ACGAACGAGA CCUCGA|--- ---------- 2341 ----(----- )[CUUGCUAA CU-Aguc-ac --|ggaca-u u----(uuua u--------- 2401 ---------- ---------- -----)---g a-ug-uacc| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gu-gg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UUG-UC(--- ---------- ----GUUUA- 2641 )GACGAUGGA AGUGCGAGGC AAAGUCAGGU CAGUGA|UGC C|CU-UAGAU G-UUCUGGgC 2701 CGCACGCGUA -AUA-CACUG AUGCGG---- ---------- ----(----) [uc-aacgag 2761 -uga------ -|-------- ----(----- --)------- ---------- |augaccu-u 2821 gucc(--gag a-)ggaga-u ggaaaucuu- ugaaa]---- ---------- ------acgc 2881 auc-gUGCUG GGGAUCGACC AU(UGUAACU -)AUGG-UCG UGAACGAGGA AUGCCUUGUA 2941 AGCAU-GCU( UCAACAA)AG CGUGU-UGAA UAAGU-CCCU GUUUUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGA-UGAA UGUUGCggug aaa-uguuug gac-guggg- ga-a-ugu-u 3061 g-uugg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-aa -cag----gu uu-gc----- ugu-gaaa|a uucguugaac 3181 cuuagcauuu agAGGAAGGA GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA---- --------|| ||| // LOCUS Por.aerugi 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyridum aerugineum. ACCESSION No information KEYWORDS No information. SOURCE Porphyridum aerugineum. ORGANISM Porphyridum aerugineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L27635 LOCUS PPUDLRRNA 1773 bp ss-rRNA RNA 22-MAR-1994 DEFINITION Porphyridum aerugineum 16S-like ribosomal RNA (16S-like rRNA). ACCESSION L27635 KEYWORDS 16S-like rRNA; 16S-like ribosomal RNA. SOURCE Porphyridium aerugineum rRNA. ORGANISM Porphyridium aerugineum Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Porphyridiales; Porphyridiacea. REFERENCE 1 (bases 1 to 1773) AUTHORS Leipe,D.D., Wainright,P.O., Gunderson,J.H., Porter,D., Patterson,D.J., Valois,F., Himmerich,S. and Sogin,M.L. TITLE The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis JOURNAL Phycologia (1994) In press STANDARD full automatic COMMENT NCBI gi: 463193 FEATURES Location/Qualifiers primer_bind 1..21 /note="these residues correspond to the 5' amplification primer and were not determined from the coding region" primer_bind 1750..1773 /note="these residues correspond to the 3' primer and were not determined from the coding region" source 1..1773 /organism="Porphyridium aerugineum" /sequenced_mol="rRNA" BASE COUNT 449 a 351 c 495 g 467 t 11 others ORIGIN BASE COUNT 449 a 351 c 495 g 467 t 1511 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UUAUGA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ auaaaucu-- uu-------- 121 ---auac--g guga-a]--- --------|- --ACU|-GCG RAUGGCUCAU UAAAAcaguc 181 au-aauuuac uygauag<-- --uacc-uu- u-u>ACUUGG -AUACCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G ACGGUAGG-( GUAGUGG)-C CU-ACCGU|G G-UGU-UUAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGYAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acg)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GG AG-ACC-(-u uuu)-GGUUG -A-CC-ACUU GGAAYGAGU| ACAUU(U-UA 961 AAUC)ACU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G WC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUAAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-C- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGA-AAG- A-CGA-A-CC GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-ggga- uuggugg-a- cguu--(--- 1921 ccaaucu--- -------)-- -gac-uccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGCGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cag-acga- aguuaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuuuggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUG AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-AGug-ga --|uugaa-u c----(uucg ---------- 2401 ---------- ---------- -----)---g a-uu-g-aa| u-g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -g-aa-cuUC 2581 UUAGAGG]-- -|-------- -----GACAC CCU-GG(--- ---------- -----GCAA- 2641 )CCAGGAGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-agcgag 2761 -ugu------ -|-------- ----(----- --)------- ---------- |---accu-u 2821 gguc(--gga a-)ggccu-g gggaaucuug ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUU AU(UGUAAUU A)UUAA-UCU UCAACGAGGA AUGCCUUGUA 2941 AGCGC-AAG( UCAUCAG)CU UGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGA UGGUCCggug aaa-uguucg gcc-ugugc- uu-g-cuu-u 3061 ---ggg---- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- ----cuc--- --ug----gc ga-gu----- gcg-gaaa|g uucauuaaac 3181 cuuaucaucu agAGGAAGGA GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Rho.macula 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodella maculata. ACCESSION No information KEYWORDS No information. SOURCE Rhodella maculata. ORGANISM Rhodella maculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U21217 LOCUS RMU21217 1758 bp rRNA PLN 16-MAR-1995 DEFINITION Rhodella maculata 18S small subunit rRNA gene. ACCESSION U21217 KEYWORDS . SOURCE Rhodella maculata. ORGANISM Rhodella maculata Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Rhodophyta; Bangiophyceae; Porphyridiales; Porphyridiaceae; Rhodella. REFERENCE 1 (bases 1 to 1758) AUTHORS Waller,R.F. and McFadden,G.I. TITLE Morphological and cytochemical analysis of an unusual nucleus-pyrenoid association in a unicellular red alga JOURNAL Protoplasma 181 (1995) In press REFERENCE 2 (bases 1 to 1758) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (16-FEB-1995) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC, 3052, Australia COMMENT NCBI gi: 710401 FEATURES Location/Qualifiers source 1..1758 /strain="CCMP 736" /organism="Rhodella maculata" rRNA 1..1758 /product="18S small subunit rRNA" BASE COUNT 454 a 352 c 484 g 465 t 3 others ORIGIN BASE COUNT 454 a 352 c 484 g 465 t 1518 others ORIGIN 1 |~~~~~~~~~ ~~~~~(GGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgc-u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugauag<-- --uacu-ga- u-u>ACUCGG -AUAACCCAA G(U-AAUU)C 241 UUGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucau uc-aa|auau cugc|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGG)-C UU-ACCAU|G G-UGG-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAUG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGGUA-GA GC-GCC-(cu cgu)-GGUGU CU-CU-AAUU GGAAUGAGU| ACAAU(U-UA 961 AAAU)UGU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGG-AUUCCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UA 1741 G-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGga- ucaggcg-a- gc----(--a 1921 caauugaa-- -------)-- --ac-ucgcu uggcacccc- -gaGG(-GAA A)CCA--AAG 1981 UU-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAGAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- aguaaggauu gac-aga(uu -gauag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGN-GGUG CAUG|GAC-| Gn-nCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGA|--- ---------- 2341 ----(----- )[CCUACUAA CU-AGcu-gu --|gggaa-u -----(uucg ---------- 2401 ---------- ---------- -----)---- a-uu-cacc| --ag------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -g-ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCG-GU(--- ---------- ----UUUUA- 2641 )GCCGGUGGA AGAUCGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uug------ -|-------- ----(----- --)------- ---------- |-caccuu-- 2821 ggcu(-ggga a-)gccc--g ggaaaucuu- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUUGGUC UC(UGUAAG- -)UGGA-CCA UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GCU( UCAUCAG)AG CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aag-cucuag gac-cgagu- ca-u-gcg-a 3061 g-cugg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- ----cua-gc -uug----cg ug-au----- uug-gaaa|u ugcgcuaaau 3181 uguaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)C~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sty.alsidi 3273 bp RNA RNA 30-JUN-1994 DEFINITION Stylonema alsidii. ACCESSION No information KEYWORDS No information. SOURCE Stylonema alsidii. ORGANISM Stylonema alsidii. REFERENCE 1 (bases 1 to 2340) AUTHORS Mark Ragan JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26204 LOCUS SYZFRA 1802 bp DNA PLN 30-JUN-1994 DEFINITION Stylonema alsidii DNA fragment. ACCESSION L26204 NID g507800 KEYWORDS PCR amplified. SOURCE Stylonema alsidii DNA. ORGANISM Stylonema alsidii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Porphyridiales; Porphyridiaceae; Stylonema. REFERENCE 1 (bases 1 to 1802) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1802 /organism="Stylonema alsidii" /db_xref="taxon:35155" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1778..1802 /standard_name="PCR primer" /note="putative" BASE COUNT 482 a 362 c 468 g 489 t 1 others BASE COUNT 482 a 362 c 468 g 489 t 1472 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAG UCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaa-a uc-------- 121 --uauau--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- --uacc-ua- c-u>ACUUGG -AUAACCGUA G(U-AAC-)C 241 UAGAGCUAA- UACRUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UCAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGAAC-GG AG-GCUU(-- uuc)AAGUGU -C-CG-UCUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AAC>CACUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAGUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUCUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- ucgguag-c- uucuu-(--- 1921 --uuca---- -------)-a auaa-gcuau cggcacccu- -aaGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGCAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGcg-ac --|gcgaa-u -----(cuuc gu-------- 2401 ---------- ---------- -----)---- a-uu-c-gc| g-g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------a| ca-cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- -gauUACCA- 2641 )ACGGAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |ucauccu-u 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------uugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGGAAUU A)UUAA-UCU UGAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguucg gau-uggga- cg-u-auacu 3061 g-ccggu--- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----acu-gg -cga----uu cg-uc----- ccg-agaa|g uucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUAG-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Compso 3273 bp RNA RNA 08-JAN-1999 DEFINITION Compsopogonales. ACCESSION No information KEYWORDS No information. SOURCE Compsopogonales. ORGANISM Compsopogonales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Com.lept.2 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados. REFERENCE 1 (bases 1 to 2340) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087125 LOCUS AF087125 1793 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados from Hawaii 18S ribosomal RNA gene, partial sequence. ACCESSION AF087125 NID g6002523 VERSION AF087125.1 GI:6002523 KEYWORDS . SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogonopsis. REFERENCE 1 (bases 1 to 1793) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1793) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1793 /organism="Compsopogonopsis leptoclados" /db_xref="taxon:82540" /country="USA: Hawaii 14" rRNA <1..>1793 /product="18S ribosomal RNA" BASE COUNT 455 a 348 c 500 g 490 t 1480 others ORIGIN 1 |~~~~~~~~~ ~GGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GAAGUAU-G GUC(GCAA)G GUU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAA~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.lept.1 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE on the freshwater families Systematics of the Compsopogonales (Rhodophyta) with emphasis JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3004) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. JOURNAL Submitted (26-AUG-1998) Department of Botany, University STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087123 LOCUS AF087123 1771 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados from New Mexico 18S ribosomal RNA gene, partial sequence. ACCESSION AF087123 NID g6002521 VERSION AF087123.1 GI:6002521 KEYWORDS . SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogonopsis. REFERENCE 1 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Compsopogonopsis leptoclados" /db_xref="taxon:82540" /country="USA: New Mexico, Blue Hole" rRNA <1..>1771 /product="18S ribosomal RNA"ref:1 (bases 1 to 1771) BASE COUNT 446 a 345 c 491 g 488 t 1503 others ORIGIN 1 |~~~~~~~~~ UGGUU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu anAGGAAGGA GAAG-UCGUA ACAAGGUUU- C~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.coer.1 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogon coeruleus.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087124 LOCUS AF087124 1762 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogon coeruleus from Florida 18S ribosomal RNA gene, partial sequence. ACCESSION AF087124 NID g6002522 VERSION AF087124.1 GI:6002522 KEYWORDS . SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogon. REFERENCE 1 (bases 1 to 1762) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1762) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1762 /organism="Compsopogon coeruleus" /db_xref="taxon:31354" /country="USA: Florida 27" rRNA <1..>1762 /product="18S ribosomal RNA" BASE COUNT 438 a 340 c 481 g 469 t 1545 others ORIGIN 1 |~~~~~~~~~ ~GGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-G-CAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 A-CGA-AAG- U-AGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu agAGGAAGGA GAAG-UCGUA ACA~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.coer.2 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogon coeruleus.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE on the freshwater families Systematics of the Compsopogonales (Rhodophyta) with emphasis JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087127 LOCUS AF087127 1778 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogon coeruleus from Saint Lucia 18S ribosomal RNA gene, partial sequence. ACCESSION AF087127 NID g6002525 VERSION AF087127.1 GI:6002525 KEYWORDS . SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogon. REFERENCE 1 (bases 1 to 1778) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1778) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1778 /organism="Compsopogon coeruleus" /db_xref="taxon:31354" /country="Saint Lucia" rRNA <1..>1778 /product="18S ribosomal RNA" BASE COUNT 433 a 338 c 477 g 465 t 1560 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~UCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-G-CAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1741 NNNNNNNNNN NNNGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu agAGGAAGGA GAAG-UCGUA ACAAGGUUC- -cgaagg(nn nc)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.coer.3 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogon coeruleus.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087128 LOCUS AF087128 1769 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogon coeruleus from Louisiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF087128 NID g6002526 VERSION AF087128.1 GI:6002526 KEYWORDS . SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogon. REFERENCE 1 (bases 1 to 1769) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Compsopogon coeruleus" /db_xref="taxon:31354" /country="USA: Louisiana, Whiskey Chitto" rRNA <1..>1769 /product="18S ribosomal RNA" BASE COUNT 448 a 345 c 493 g 483 t 1504 others ORIGIN 1 |~~~~~CA-- CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucg-uu agAGGAAGGA GAAG-AGUGG A---AGUca- a~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bol.erythr 3273 bp RNA RNA 05-APR-1998 DEFINITION Boldia erythrosiphon.. ACCESSION No information KEYWORDS No information. SOURCE Boldia erythrosiphon. ORGANISM Boldia erythrosiphon. REFERENCE 2 (bases 1 to 1771) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Phylogenetic relationships of the freshwater alga Boldia erythrosiphon (Compsopogonales, Rhodophyta) based on 18S rRNA gene sequences JOURNAL J. Phycol. 34 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF055299 LOCUS AF055299 1786 bp DNA PLN 05-APR-1998 DEFINITION Boldia erythrosiphon 18S ribosomal RNA gene, partial sequence. ACCESSION AF055299 NID g3023153 KEYWORDS . SOURCE Boldia erythrosiphon. ORGANISM Boldia erythrosiphon Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Boldia. REFERENCE 1 (bases 1 to 1786) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Phylogenetic relationships of the freshwater alga Boldia erythrosiphon (Compsopogonales, Rhodophyta) based on 18S rRNA gene sequences JOURNAL J. Phycol. 34 (1998) In press REFERENCE 2 (bases 1 to 1786) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Direct Submission JOURNAL Submitted (23-MAR-1998) Marine Biology, Biological Centre, P.O. Box 14, Haren 9750 AA, The Netherlands FEATURES Location/Qualifiers source 1..1786 /organism="Boldia erythrosiphon" /db_xref="taxon:74908" rRNA <1..>1786 /product="18S ribosomal RNA" BASE COUNT 434 a 331 c 496 g 466 t 59 others BASE COUNT 434 a 331 c 496 g 466 t 1546 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaacau-c uu-------- 121 --uguac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcagua 181 au-aauuuau nugaugg<-- -uaccu-cg- u-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GA AG-GCUC(-u uuu)GGGUUU -U-CU-AAUU GGAAUGAGU| ACAAU(U-UG 961 ANUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUNGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-g- gauc--(--- 1921 --gaag---- -------)-a augagcccac cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-uuugGGU |-U|CUGGGG -NNAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-gc -g|ggaau-u -----(gcug a--------- 2401 ---------- ---------- -----)---- g-au-g-cc| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gg-ag-cu-c 2581 -UAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- -gannnnnn- 2641 )nnnnnNNNN NNNUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-agcgag 2761 -u-u------ -|-------- ----(----- --)------- ---------- |-ggaccu-u 2821 ugcc(--gga a-)ggcgc-g gguaaucuc- ugaac]---- ---------- ------cugc 2881 auc-gUGCUG GGGCUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AS----gag( ucau---)mk cgCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACAGCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCUcgag uguacaucug uuc-ggacu- gcgg-cuggc 3061 u-ggcggg-- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cc-gk -ggc----c- gg-uc----- ugc-ggaa|a gucauugaac 3181 yuuaumauuu agAGGAAGGA GAAG-USGUA ACAAGGUUU- CCGUAG-(UG AA)CCUGC~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Smi.naia.2 3273 bp RNA RNA 01-OCT-1999 DEFINITION Smithora naiadum.. ACCESSION No information KEYWORDS No information. SOURCE Smithora naiadum. ORGANISM Smithora naiadum. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087129 LOCUS AF087129 1715 bp DNA PLN 01-OCT-1999 DEFINITION Smithora naiadum from United Kingdom 18S ribosomal RNA gene, partial sequence. ACCESSION AF087129 NID g6002527 VERSION AF087129.1 GI:6002527 KEYWORDS . SOURCE Smithora naiadum. ORGANISM Smithora naiadum Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Erythropeltidaceae; Smithora. REFERENCE 1 (bases 1 to 1715) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1715) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1715 /organism="Smithora naiadum" /db_xref="taxon:82561" /country="United Kingdom: Sooke, Whiffen Spit" rRNA <1..>1715 /product="18S ribosomal RNA" BASE COUNT 437 a 348 c 441 g 455 t 1592 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~CUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaac-g-u uu-------- 121 --uauac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcagua 181 uu-aauucau uugaugg<-- --uacc-uu- uuu>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAKCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAA--)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|YAGU-U- 1681 GGGGGCACU| CGU-AUNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 N-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCACUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguua-(--- 1921 ----uu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|acgaa-u -----(cuug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 gacc(--gga a-)ggucc-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- ug-a-uug-c 3061 c-ucgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu anAGGAAGGA GAAA-UC~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Smi.naia.1 3273 bp RNA RNA 01-OCT-1999 DEFINITION Smithora naiadum.. ACCESSION No information KEYWORDS No information. SOURCE Smithora naiadum. ORGANISM Smithora naiadum. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE on the freshwater families Systematics of the Compsopogonales (Rhodophyta) with emphasis JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087126 LOCUS AF087126 1782 bp DNA PLN 01-OCT-1999 DEFINITION Smithora naiadum from California 18S ribosomal RNA gene, partial sequence. ACCESSION AF087126 NID g6002524 VERSION AF087126.1 GI:6002524 KEYWORDS . SOURCE Smithora naiadum. ORGANISM Smithora naiadum Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Erythropeltidaceae; Smithora. REFERENCE 1 (bases 1 to 1782) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1782) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1782 /organism="Smithora naiadum" /db_xref="taxon:82561" /country="USA: California, Moss Beach" rRNA <1..>1782 /product="18S ribosomal RNA" BASE COUNT 462 a 360 c 467 g 491 t 1493 others ORIGIN 1 |~~~~~~~~~ ugGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaac-g-u uu-------- 121 --uauac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugg<-- --uacc-uu- uuu>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAA--)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCACUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguua-(--- 1921 ----uu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|acgaa-u -----(cuug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 gacc(--gga a-)ggucc-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- ug-a-uug-c 3061 c-ucgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu anAGGAAGGA GAAA-UCGUA MCAAGGUUU- CCGUAGG(UG AA)CCUGCA- 3241 AAGGAA~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Rho.parvul 3273 bp RNA RNA 11-JAN-1999 DEFINITION Rhodochaete parvula. ACCESSION No information KEYWORDS No information. SOURCE Rhodochaete parvula. ORGANISM Rhodochaete parvula. REFERENCE 2 (bases 1 to 1771) AUTHORS Zuccarello,G.C., West,J.A., Bitans,A. and Kraft,G TITLE Phylogeny of Rhodochaete parvula from Australia JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF139462 LOCUS AF139462 1762 bp DNA PLN 22-DEC-1999 DEFINITION Rhodochaete parvula small subunit ribosomal RNA gene, complete sequence. ACCESSION AF139462 NID g6625660 VERSION AF139462.1 GI:6625660 KEYWORDS . SOURCE Rhodochaete parvula. ORGANISM Rhodochaete parvula Eukaryota; Rhodophyta; Bangiophyceae; Rhodochaetales; Rhodochaetaceae; Rhodochaete. REFERENCE 1 (bases 1 to 1762) AUTHORS Zuccarello,G.C., West,J.A., Bitans,A. and Kraft,G. TITLE Phylogeny of Rhodochaete parvula from Australia JOURNAL Unpublished REFERENCE 2 (bases 1 to 1762) AUTHORS Zuccarello,G.C. and West,J.A. TITLE Direct Submission JOURNAL Submitted (30-MAR-1999) School of Biological Science, University of New South Wales, Sydney, NSW 2052, Australia FEATURES Location/Qualifiers source 1..1762 /organism="Rhodochaete parvula" /db_xref="taxon:110510" /country="Australia:Point Lonsdale" rRNA 1..1762 /product="small subunit ribosomal RNA" BASE COUNT 459 a 363 c 460 g 476 t 1515 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgu-u uu-------- 121 --uauac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugg<-- --uuaa-cc- u-u>ACUCGG -AUACCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGN 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GNCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GG AG-GCCU(-u uuc)AGGUUU -C-CC-AAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-NN- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUUUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagccg-a- uguuc-(--- 1921 ---uuu---- -------)-- -ugacgcggu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|aucaa-u -----(ccug u--------- 2401 ---------- ---------- -----)---- a-uu-g-au| g--g------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuc------ -|-------- ----(----- --)------- ---------- |--cuccu-u 2821 gacc(--gga a-)gguau-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-gUGAUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UAAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGG ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- cg-a-acg-c 3061 u-uugg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-au -cgc----au cg-cc----- gcg-gaaa|g uucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCG-A ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCua~~ ~~~~~~~~|| ||| // LOCUS (5)-Erythr 3273 bp RNA RNA 08-JAN-1999 DEFINITION Erythropeltidales. ACCESSION No information KEYWORDS No information. SOURCE Erythropeltidales. ORGANISM Erythropeltidales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .-........ .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Erythr.sp. 3273 bp RNA RNA 24-JAN-191 DEFINITION Erythrocladia sp.. ACCESSION No information KEYWORDS No information. SOURCE Erythrocladia sp. ORGANISM Erythrocladia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26188 Erythrocladia _______ (Carolyn has the species name, but she's at lunch now) Mark Ragan LOCUS EYAFRA 1793 bp ds-DNA PLN 30-JUN-1994 DEFINITION Erythrocladia sp. DNA fragment. ACCESSION L26188 KEYWORDS PCR amplified. SOURCE Erythrocladia sp. DNA. ORGANISM Erythrocladia sp. Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Compsopogonales; Compsopogonaceae. REFERENCE 1 (bases 1 to 1793) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507241 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1767..1793 /standard_name="PCR primer" /note="putative" source 1..1793 /organism="Erythrocladia sp." /sequenced_mol="DNA" BASE COUNT 460 a 368 c 477 g 488 t BASE COUNT 460 a 368 c 477 g 488 t 1480 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgu-u uu-------- 121 ---auac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugg<-- --uacc-uc- u-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGCGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAACC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGG-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguua-(--- 1921 ---uuu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|acgaa-u -----(ccug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -cuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuc- ucaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- cg-a-uug-c 3061 u-ucgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGU~~~~ ~~~~~~~~|| ||| // LOCUS E.carnea 3273 bp RNA RNA 24-JAN-191 DEFINITION Erythrotrichia carnea. ACCESSION No information KEYWORDS No information. SOURCE Erythrotrichia carnea. ORGANISM Erythrotrichia carnea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26189 ERYTHROTRICHIA CARNEA LOCUS EYTFRA 1795 bp ds-DNA PLN 30-JUN-1994 DEFINITION Erythrotrichia carnea DNA fragment. ACCESSION L26189 KEYWORDS PCR amplified. SOURCE Erythrotrichia carnea DNA. ORGANISM Erythrotrichia carnea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Compsopogonales; Compsopogonaceae. REFERENCE 1 (bases 1 to 1795) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507242 FEATURES Location/Qualifiers primer_bind 1..21 /standard_name="PCR primer" /note="putative" primer_bind 1769..1795 /standard_name="PCR primer" /note="putative" source 1..1795 /organism="Erythrotrichia carnea" /sequenced_mol="DNA" BASE COUNT 465 a 367 c 472 g 491 t BASE COUNT 465 a 367 c 472 g 491 t 1478 others ORIGIN 1 |~~~~~CAAC CUGGU(-GA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgu-u uu-------- 121 ---auac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugu<-- uuuacc-au- u-u>ACUUGG AAUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCACUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguca-(--- 1921 ---acu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cucucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-agcu-ac --|acgaa-u -----(cuug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- cg-a-ucg-c 3061 u-ucgg---- ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Florid 3273 bp RNA RNA 24-JAN-191 DEFINITION Florideophyceae. ACCESSION No information KEYWORDS No information. SOURCE Florideophyceae. ORGANISM Florideophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (5)-Acroch 3273 bp RNA RNA 24-JAN-191 DEFINITION Acrochaetiales. ACCESSION No information KEYWORDS No information. SOURCE Acrochaetiales. ORGANISM Acrochaetiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Aud.arcuat 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella arcuata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella arcuata. ORGANISM Audouinella arcuata. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079786 LOCUS AF079786 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella arcuata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079786 NID g3406782 KEYWORDS . SOURCE Audouinella arcuata. ORGANISM Audouinella arcuata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella arcuata" /db_xref="taxon:69141" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 429 a 385 c 515 g 442 t BASE COUNT 429 a 385 c 515 g 442 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-Aggg-gc --|cgcua-c -----(auuu u-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-cgcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.amphir 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella amphiroae.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella amphiroae. ORGANISM Audouinella amphiroae. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079785 LOCUS AF079785 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella amphiroae small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079785 NID g3406781 KEYWORDS . SOURCE Audouinella amphiroae. ORGANISM Audouinella amphiroae Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella amphiroae" /db_xref="taxon:79935" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 427 a 376 c 517 g 450 t BASE COUNT 427 a 376 c 517 g 450 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcuu--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cuuu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.aspara 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella asparagopsis.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella asparagopsis. ORGANISM Audouinella asparagopsis. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079795 LOCUS AF079795 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella asparagopsis small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079795 NID g3406791 KEYWORDS . SOURCE Audouinella asparagopsis. ORGANISM Audouinella asparagopsis Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella asparagopsis" /db_xref="taxon:79936" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 428 a 378 c 518 g 447 t BASE COUNT 428 a 378 c 518 g 447 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-c------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcgc---- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----gcg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.caespi 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella caespitosa.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella caespitosa. ORGANISM Audouinella caespitosa. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079787 LOCUS AF079787 1769 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella caespitosa small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079787 NID g3406783 KEYWORDS . SOURCE Audouinella caespitosa. ORGANISM Audouinella caespitosa Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1769) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Audouinella caespitosa" /db_xref="taxon:79937" primer_bind 1..20 /note="G01" rRNA 21..1741 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="G07 complement" BASE COUNT 430 a 376 c 511 g 452 t BASE COUNT 430 a 376 c 511 g 452 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)UAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-uacug- ug-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.dasyae 3273 bp RNA RNA 24-JAN-191 DEFINITION Audouinella dasyae. ACCESSION No information KEYWORDS No information. SOURCE Audouinella dasyae. ORGANISM Audouinella dasyae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26181 LOCUS AUDFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Audouinella dasyae DNA fragment. ACCESSION L26181 KEYWORDS PCR primer. SOURCE Audouinella dasyae DNA. ORGANISM Audouinella dasyae Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Acrochaetiales; Acrochaetiaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507221 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" source 1..1771 /organism="Audouinella dasyae" /sequenced_mol="DNA" BASE COUNT 434 a 375 c 514 g 448 t BASE COUNT 434 a 375 c 514 g 448 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gggag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu ccug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Aud.davies 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella daviesii.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella daviesii. ORGANISM Audouinella daviesii. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079788 LOCUS AF079788 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella daviesii small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079788 NID g3406784 KEYWORDS . SOURCE Audouinella daviesii. ORGANISM Audouinella daviesii Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella daviesii" /db_xref="taxon:79938" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 430 a 375 c 516 g 449 t BASE COUNT 430 a 375 c 516 g 449 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gu --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.endoph 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella endophytica.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella endophytica. ORGANISM Audouinella endophytica. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079789 LOCUS AF079789 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella endophytica small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079789 NID g3406785 KEYWORDS . SOURCE Audouinella endophytica. ORGANISM Audouinella endophytica Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella endophytica" /db_xref="taxon:79939" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 432 a 380 c 510 g 448 t BASE COUNT 432 a 380 c 510 g 448 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAUAAcaguu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UUAC |GGGUCACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --caug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gggc(--gaa a-)gcucu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-cgcua- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.pectin 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella pectinata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella pectinata. ORGANISM Audouinella pectinata. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079790 LOCUS AF079790 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella pectinata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079790 NID g3406786 KEYWORDS . SOURCE Audouinella pectinata. ORGANISM Audouinella pectinata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella pectinata" /db_xref="taxon:79940" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 430 a 378 c 515 g 448 t BASE COUNT 430 a 378 c 515 g 448 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-u -----(cauu g-u------- 2401 ---------- ---------- -----)---- a-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcgc---- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----gcg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.proska 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella proskaueri.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella proskaueri. ORGANISM Audouinella proskaueri. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079791 LOCUS AF079791 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella proskaueri small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079791 NID g3406787 KEYWORDS . SOURCE Audouinella proskaueri. ORGANISM Audouinella proskaueri Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella proskaueri" /db_xref="taxon:79941" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 430 a 376 c 516 g 449 t BASE COUNT 430 a 376 c 516 g 449 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-u -----(cauu g-u------- 2401 ---------- ---------- -----)---- a-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcgc---- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----gcg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.rhizoi 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella rhizoidea.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella rhizoidea. ORGANISM Audouinella rhizoidea. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079792 LOCUS AF079792 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella rhizoidea small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079792 NID g3406788 KEYWORDS . SOURCE Audouinella rhizoidea. ORGANISM Audouinella rhizoidea Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella rhizoidea" /db_xref="taxon:79942" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 431 a 376 c 513 g 450 t BASE COUNT 431 a 376 c 513 g 450 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)UAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.secund 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella secundata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella secundata. ORGANISM Audouinella secundata. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079784 LOCUS AF079784 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella secundata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079784 NID g3406780 KEYWORDS . SOURCE Audouinella secundata. ORGANISM Audouinella secundata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella secundata" /db_xref="taxon:79943" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 427 a 384 c 517 g 443 t BASE COUNT 427 a 384 c 517 g 443 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(auuu u-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(ucua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.tenue 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella tenue.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella tenue. ORGANISM Audouinella tenue. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079796 LOCUS AF079796 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella tenue small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079796 NID g3406792 KEYWORDS . SOURCE Audouinella tenue. ORGANISM Audouinella tenue Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella tenue" /db_xref="taxon:79944" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 428 a 384 c 516 g 443 t BASE COUNT 428 a 384 c 516 g 443 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-uc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.tetras 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella tetraspora.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella tetraspora. ORGANISM Audouinella tetraspora. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079793 LOCUS AF079793 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella tetraspora small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079793 NID g3406789 KEYWORDS . SOURCE Audouinella tetraspora. ORGANISM Audouinella tetraspora Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella tetraspora" /db_xref="taxon:79945" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 433 a 375 c 512 g 449 t 1 others BASE COUNT 433 a 375 c 512 g 449 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.herman 3273 bp RNA RNA 24-JUL-1998 DEFINITION Audouinella hermannii.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella hermannii. ORGANISM Audouinella hermannii. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026040 LOCUS AF026040 1771 bp DNA PLN 24-JUL-1998 DEFINITION Audouinella hermannii 18S small subunit ribosomal ribosomal RNA gene, complete sequence. ACCESSION AF026040 NID g2564923 KEYWORDS . SOURCE Audouinella hermannii. ORGANISM Audouinella hermannii Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 3 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella hermannii" /isolate="G0164" /db_xref="taxon:31360" /note="synonym: Audouinella violacea" primer_bind 1..20 /note="primer G01" rRNA 1..1771 /product="18S small subunit ribosomal rRNA" primer_bind complement(1744..1771) /note="primer G07" BASE COUNT 427 a 387 c 518 g 439 t BASE COUNT 427 a 387 c 518 g 439 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.macr.1 3273 bp RNA RNA 02-DEC-1999 DEFINITION Audouinella macrospora. str. 3394 small subunit ribosomal RNA gene, complete sequence. ACCESSION No information KEYWORDS No information. SOURCE Audouinella macrospora. str. 3394 small subunit ribosomal RNA gene, complete sequence. ORGANISM Audouinella macrospora. REFERENCE 2 (bases 1 to 1771) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF199505 LOCUS AF199505 1768 bp DNA PLN 02-DEC-1999 DEFINITION Audouinella macrospora strain 3394 small subunit ribosomal RNA gene, complete sequence. ACCESSION AF199505 NID g6503179 VERSION AF199505.1 GI:6503179 KEYWORDS . SOURCE Audouinella macrospora. ORGANISM Audouinella macrospora Eukaryota; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Direct Submission JOURNAL Submitted (28-OCT-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Audouinella macrospora" /strain="3394" /db_xref="taxon:109050" rRNA 1..1768 /product="small subunit ribosomal RNA" BASE COUNT 424 a 394 c 519 g 431 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u -c-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcaguu 181 au-aguuucu ucgaugc<-- --uacu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-AUCAU|G G-UUG-UGAC |AGGUCACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGC(-a uau)GCGUCU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUC| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|gggua-c -----(ccgu gug------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --g--u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugccg- cg-a-cug-g 3061 g-g------- ---------- ---------- --(uucacu- -)-------- ---------- 3121 ---------- --------cc -cug----gc cg-ca----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.macr.2 3273 bp RNA RNA 02-DEC-1999 DEFINITION Audouinella macrospora. str. 3603 small subunit ribosomal RNA gene, complete sequence. ACCESSION No information KEYWORDS No information. SOURCE Audouinella macrospora. str. 3603 small subunit ribosomal RNA gene, complete sequence. ORGANISM Audouinella macrospora. REFERENCE 2 (bases 1 to 1771) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure Affinities of the freshwater red alga Audouinella macrospora JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF199506 LOCUS AF199506 1768 bp DNA PLN 02-DEC-1999 DEFINITION Audouinella macrospora strain 3603 small subunit ribosomal RNA gene, complete sequence. ACCESSION AF199506 NID g6503180 VERSION AF199506.1 GI:6503180 KEYWORDS . SOURCE Audouinella macrospora. ORGANISM Audouinella macrospora Eukaryota; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Direct Submission JOURNAL Submitted (28-OCT-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Audouinella macrospora" /strain="3603" /db_xref="taxon:109050" rRNA 1..1768 /product="small subunit ribosomal RNA" BASE COUNT 423 a 394 c 520 g 431 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u -c-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcaguu 181 au-aguuucu ucgaugc<-- --uacu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-AUCAU|G G-UUG-UGAC |AGGUCACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGC(-a uau)GCGUCU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUC| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|gggua-c -----(ccgu gug------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --g--u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugccg- cg-a-cug-g 3061 g-g------- ---------- ---------- --(uucgcu- -)-------- ---------- 3121 ---------- --------cc -cug----gc cg-ca----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Chantr.sp. 3273 bp RNA RNA 02-DEC-1999 DEFINITION Chantransia sp.. ACCESSION No information KEYWORDS No information. SOURCE Chantransia sp. ORGANISM Chantransia sp. REFERENCE 2 (bases 1 to 1771) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF199507 LOCUS AF199507 1766 bp DNA PLN 02-DEC-1999 DEFINITION Chantransia sp. small subunit ribosomal RNA gene, complete sequence. ACCESSION AF199507 NID g6503181 VERSION AF199507.1 GI:6503181 KEYWORDS . SOURCE Chantransia sp. ORGANISM Chantransia sp. Eukaryota; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Chantransia. REFERENCE 1 (bases 1 to 1766) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1766) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Direct Submission JOURNAL Submitted (28-OCT-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Chantransia sp." /strain="3585" /db_xref="taxon:109052" rRNA 1..1766 /product="small subunit ribosomal RNA" BASE COUNT 353 a 321 c 397 g 338 t 1864 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(A-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN N|NNNNNN-N NNNN--NNNN NN|NNNNNNN 1081 NNNNNNNNNN N|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN NNGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CNUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU C)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cguug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uuuguu- -)-------- ---------- 3121 ---------- --------cu -ccg----gc cg-cg----- aug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cam.oxycla 3273 bp RNA RNA 10-AUG-1998 DEFINITION Camontagnea oxyclada.. ACCESSION No information KEYWORDS No information. SOURCE Camontagnea oxyclada. ORGANISM Camontagnea oxyclada. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079794 LOCUS AF079794 1771 bp DNA PLN 10-AUG-1998 DEFINITION Camontagnea oxyclada small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079794 NID g3406790 KEYWORDS . SOURCE Camontagnea oxyclada. ORGANISM Camontagnea oxyclada Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Camontagnea. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Camontagnea oxyclada" /db_xref="taxon:79947" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 433 a 379 c 512 g 447 t BASE COUNT 433 a 379 c 512 g 447 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cgcua-c -----(cguu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-u------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- -------uc| gc-uu-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u ccgaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc ca-ua----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Rho.purpur 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodochorton purpureum. ACCESSION No information KEYWORDS No information. SOURCE Rhodochorton purpureum. ORGANISM Rhodochorton purpureum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23816 LOCUS RPU23816 1771 bp DNA PLN 06-SEP-1995 DEFINITION Rhodochorton purpureum 18S ribosomal RNA gene, complete sequence. ACCESSION U23816 KEYWORDS . SOURCE Rhodochorton purpureum. ORGANISM Rhodochorton purpureum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Rhodochorton. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975286 FEATURES Location/Qualifiers source 1..1771 /isolate="culture GWS3112" /organism="Rhodochorton purpureum" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 427 a 383 c 517 g 444 t ORIGIN BASE COUNT 427 a 383 c 517 g 444 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-uc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-cu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gu-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Ahnfel 3273 bp RNA RNA 24-JAN-191 DEFINITION Ahnfeltiales. ACCESSION No information KEYWORDS No information. SOURCE Ahnfeltiales. ORGANISM Ahnfeltiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Ahn.plicat 3273 bp RNA RNA 24-JAN-191 DEFINITION Ahnfeltia plicata. ACCESSION No information KEYWORDS No information. SOURCE Ahnfeltia plicata. ORGANISM Ahnfeltia plicata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Z14139 ID AP18SRRNG standard; DNA; PLN; 1765 BP. XX AC Z14139; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE A.plicata gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Ahnfeltia plicata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Phyllophoraceae. XX RN [1] RP 1-1765 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1765 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1765 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note="PCR_primer" /citation= ([1]) FT misc_feature 1739..1765 FT /note="PCR_primer" /citation= ([1]) XX SQ Sequence 1765 BP; 418 A; 393 C; 531 G; 423 T; 0 other; BASE COUNT 418 a 393 c 531 g 423 t 1508 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUCGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUU--G ACGUGAAG-( GUAUUGU)-C UU-CACGU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AAUA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGCUUGCGU A|UGUCAC-C GAUG--AUGC GG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAG-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gacu--(--- 1921 gaa-uuu--- -------)-- -ggc-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGg-cg --|ggcua-u c----(gcuu ---------- 2401 ---------- ---------- -----)---g a-ua-g-ua| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------c| ug-aC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaacccc- -caaa]---- ---------- ------cccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU A)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GGG( UCAUCAU)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acucgg gac-cgcgc- cg-a-cua-g 3061 c-gcgu---- ---------- ---------- --(cua---- -)-------- ---------- 3121 ---------- ----acg-cg -uug----gu ug-uu----- gug-gaaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Balbia 3273 bp RNA RNA 24-JAN-191 DEFINITION Balbianiales. ACCESSION No information KEYWORDS No information. SOURCE Balbianiales. ORGANISM Balbianiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Rho.oregon 3273 bp RNA RNA 05-NOV-1997 DEFINITION Rhododraparnaldia oregonica.. ACCESSION No information KEYWORDS No information. SOURCE Rhododraparnaldia oregonica. ORGANISM Rhododraparnaldia oregonica. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026043 OCUS AF026043 1771 bp DNA PLN 05-NOV-1997 DEFINITION Rhododraparnaldia oregonica 18S ribosomal RNA gene, complete sequence. ACCESSION AF026043 NID g2564926 KEYWORDS . SOURCE Rhododraparnaldia oregonica. ORGANISM Rhododraparnaldia oregonica Eukaryotae; Rhodophyta; Florideophyceae; Acrochaetiales; unclassified Acrochaetiales; Rhododraparnaldia. REFERENCE 1 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Rhododraparnaldia oregonica" /db_xref="taxon:67958" primer_bind 1..20 rRNA 1..1771 /product="18S rRNA" primer_bind complement(1744..1771) BASE COUNT 430 a 383 c 518 g 440 t BASE COUNT 430 a 383 c 518 g 440 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggca-g- gcau--(--- 1921 --uacg---- -------)-a ugac-cuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| g-cu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uuua----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-auuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Batrac 3273 bp RNA RNA 24-JAN-191 DEFINITION Batrachospermales. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermales. ORGANISM Batrachospermales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Bat.gelati 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum gelatinosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum gelatinosum. ORGANISM Batrachospermum gelatinosum. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026045 LOCUS AF026045 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum gelatinosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026045 NID g2564928 KEYWORDS . SOURCE Batrachospermum gelatinosum. ORGANISM Batrachospermum gelatinosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum gelatinosum" /db_xref="taxon:69143" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 425 a 382 c 522 g 436 t BASE COUNT 425 a 382 c 522 g 436 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.boryan 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum boryanum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum boryanum. ORGANISM Batrachospermum boryanum. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026044 LOCUS AF026044 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum boryanum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026044 NID g2564927 KEYWORDS . SOURCE Batrachospermum boryanum. ORGANISM Batrachospermum boryanum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum boryanum" /db_xref="taxon:67905" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 424 a 380 c 523 g 438 t BASE COUNT 424 a 380 c 523 g 438 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cu-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uuaauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc ca-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.helmin 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum helminthosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum helminthosum. ORGANISM Batrachospermum helminthosum. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026046 LOCUS AF026046 1766 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum helminthosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026046 NID g2564929 KEYWORDS . SOURCE Batrachospermum helminthosum. ORGANISM Batrachospermum helminthosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1766) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1766) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Batrachospermum helminthosum" /db_xref="taxon:67907" primer_bind 1..20 rRNA 1..1766 /product="18S rRNA" primer_bind complement(1739..1766) BASE COUNT 424 a 386 c 518 g 438 t BASE COUNT 424 a 386 c 518 g 438 t 1507 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaua---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.louisi 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum louisianae.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum louisianae. ORGANISM Batrachospermum louisianae. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026047 LOCUS AF026047 1835 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum louisianae 18S ribosomal RNA gene, complete sequence. ACCESSION AF026047 NID g2564930 KEYWORDS . SOURCE Batrachospermum louisianae. ORGANISM Batrachospermum louisianae Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1835 /organism="Batrachospermum louisianae" /db_xref="taxon:67908" primer_bind 1..20 rRNA 1..1835 /product="18S rRNA" primer_bind complement(1808..1835) BASE COUNT 342 a 316 c 384 g 328 t 465 others BASE COUNT 342 a 316 c 384 g 328 t 1903 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(N-NN 961 NNNN)NNN|N -NNNNN-NN- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN N|NNNNNN-N NNNN--NNNN NN|NNNNNNN 1081 NNNNNNNNNN N|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --caug---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -yaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU C)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cguug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -ccg----gc cg-cg----- aug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.macros 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum macrosporum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum macrosporum. ORGANISM Batrachospermum macrosporum. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026048 LOCUS AF026048 1770 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum macrosporum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026048 NID g2564931 KEYWORDS . SOURCE Batrachospermum macrosporum. ORGANISM Batrachospermum macrosporum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1770) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Batrachospermum macrosporum" /db_xref="taxon:67909" primer_bind 1..20 rRNA 1..1770 /product="18S rRNA" primer_bind complement(1743..1770) BASE COUNT 428 a 393 c 519 g 430 t BASE COUNT 428 a 393 c 519 g 430 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcaguu 181 au-aguuucu ucgaugu<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-AUCAU|G G-UUG-UGAC |AGGUGACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGC(-a uau)GCGUCU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUC| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|gggua-c c----(cgug u--------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cgcca- cg-a-ccg-g 3061 g-g------- ---------- ---------- --(uuuacu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-ca----- gug-gaaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.turfos 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum turfosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum turfosum. ORGANISM Batrachospermum turfosum. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026049 LOCUS AF026049 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum turfosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026049 NID g2564932 KEYWORDS . SOURCE Batrachospermum turfosum. ORGANISM Batrachospermum turfosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum turfosum" /db_xref="taxon:67910" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 423 a 383 c 520 g 439 t BASE COUNT 423 a 383 c 520 g 439 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGA-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uuaauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.virgat 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum virgato-decaisneanum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum virgato-decaisneanum. ORGANISM Batrachospermum virgato-decaisneanum. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026050 LOCUS AF026050 1835 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum virgato-decaisneanum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026050 NID g2564933 KEYWORDS . SOURCE Batrachospermum virgato-decaisneanum. ORGANISM Batrachospermum virgato-decaisneanum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1835 /organism="Batrachospermum virgato-decaisneanum" /db_xref="taxon:67911" primer_bind 1..20 rRNA 1..1835 /product="18S rRNA" primer_bind complement(1808..1835) BASE COUNT 351 a 324 c 396 g 335 t 429 others BASE COUNT 351 a 324 c 396 g 335 t 1867 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN N|NNNNNN-N NNNN--NNNN NN|NNNNNNN 1081 NNNNNNNNNN N|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --caug---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU C)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cguug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -ccg----gc cg-cg----- aug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Lem.fluvia 3273 bp RNA RNA 05-NOV-1997 DEFINITION Lemanea fluviatilis.. ACCESSION No information KEYWORDS No information. SOURCE Lemanea fluviatilis. ORGANISM Lemanea fluviatilis. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026051 LOCUS AF026051 1765 bp DNA PLN 05-NOV-1997 DEFINITION Lemanea fluviatilis 18S ribosomal RNA gene, complete sequence. ACCESSION AF026051 NID g2564934 KEYWORDS . SOURCE Lemanea fluviatilis. ORGANISM Lemanea fluviatilis Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Lemaneaceae; Lemanea. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Lemanea fluviatilis" /db_xref="taxon:67900" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 424 a 380 c 522 g 439 t BASE COUNT 424 a 380 c 522 g 439 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---ua-u--g acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uu--g 3061 g-gg------ ---------- ---------- --(uucau-- -)-------- ---------- 3121 ---------- ------u-cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Par.catena 3273 bp RNA RNA 05-NOV-1997 DEFINITION Paralemanea catenata.. ACCESSION No information KEYWORDS No information. SOURCE Paralemanea catenata. ORGANISM Paralemanea catenata. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026052 LOCUS AF026052 1765 bp DNA PLN 05-NOV-1997 DEFINITION Paralemanea catenata 18S ribosomal RNA gene, complete sequence. ACCESSION AF026052 NID g2564935 KEYWORDS . SOURCE Paralemanea catenata. ORGANISM Paralemanea catenata Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Lemaneaceae; Paralemanea. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Paralemanea catenata" /db_xref="taxon:67898" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 426 a 379 c 520 g 440 t BASE COUNT 426 a 379 c 520 g 440 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucggacg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| g-uc------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Psi.scopar 3273 bp RNA RNA 05-NOV-1997 DEFINITION Psilosiphon scoparium.. ACCESSION No information KEYWORDS No information. SOURCE Psilosiphon scoparium. ORGANISM Psilosiphon scoparium. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026041 LOCUS AF026041 1765 bp DNA PLN 05-NOV-1997 DEFINITION Psilosiphon scoparium 18S ribosomal RNA gene, complete sequence. ACCESSION AF026041 NID g2564924 KEYWORDS . SOURCE Psilosiphon scoparium. ORGANISM Psilosiphon scoparium Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Psilosiphonaceae; Psilosiphon. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Psilosiphon scoparium" /isolate="G0084" /db_xref="taxon:67903" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 421 a 392 c 518 g 434 t BASE COUNT 421 a 392 c 518 g 434 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UCAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uuug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| g-uc------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------cccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Not.nodosu 3273 bp RNA RNA 24-JAN-191 DEFINITION Nothocladus nodosus. ACCESSION No information KEYWORDS No information. SOURCE Nothocladus nodosus. ORGANISM Nothocladus nodosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23815 LOCUS NNU23815 1765 bp DNA PLN 06-SEP-1995 DEFINITION Nothocladus nodosus 18S ribosomal RNA gene, complete sequence. ACCESSION U23815 KEYWORDS . SOURCE Nothocladus nodosus. ORGANISM Nothocladus nodosus Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Nothocladus. REFERENCE 1 (bases 1 to 1765) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975283 FEATURES Location/Qualifiers source 1..1765 /isolate="field sample, Armstrong Creek" /organism="Nothocladus nodosus" rRNA 1..1765 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1738..1765) /note="3' end PCR primer" BASE COUNT 428 a 385 c 516 g 436 t ORIGIN BASE COUNT 428 a 385 c 516 g 436 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- acu)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gau-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-agaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sir.huille 3273 bp RNA RNA 05-NOV-1997 DEFINITION Sirodotia huillensis.. ACCESSION No information KEYWORDS No information. SOURCE Sirodotia huillensis. ORGANISM Sirodotia huillensis. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026054 LOCUS AF026054 1765 bp DNA PLN 05-NOV-1997 DEFINITION Sirodotia huillensis 18S ribosomal RNA gene, complete sequence. ACCESSION AF026054 NID g2564937 KEYWORDS . SOURCE Sirodotia huillensis. ORGANISM Sirodotia huillensis Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Sirodotia. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Sirodotia huillensis" /db_xref="taxon:67913" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 426 a 382 c 520 g 437 t BASE COUNT 426 a 382 c 520 g 437 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sir.suecic 3273 bp RNA RNA 05-NOV-1997 DEFINITION Sirodotia suecica.. ACCESSION No information KEYWORDS No information. SOURCE Sirodotia suecica. ORGANISM Sirodotia suecica. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026053 LOCUS AF026053 1765 bp DNA PLN 05-NOV-1997 DEFINITION Sirodotia suecica 18S ribosomal RNA gene, complete sequence. ACCESSION AF026053 NID g2564936 KEYWORDS . SOURCE Sirodotia suecica. ORGANISM Sirodotia suecica Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Sirodotia. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Sirodotia suecica" /db_xref="taxon:67914" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 425 a 384 c 521 g 435 t BASE COUNT 425 a 384 c 521 g 435 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-cgcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Tho.violac 3273 bp RNA RNA 05-NOV-1997 DEFINITION Thorea violacea.. ACCESSION No information KEYWORDS No information. SOURCE Thorea violacea. ORGANISM Thorea violacea. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026042 LOCUS AF026042 1916 bp DNA PLN 05-NOV-1997 DEFINITION Thorea violacea 18S ribosomal RNA gene, complete sequence. ACCESSION AF026042 NID g2564925 KEYWORDS . SOURCE Thorea violacea. ORGANISM Thorea violacea Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Thoreaceae; Thorea. REFERENCE 1 (bases 1 to 1916) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1916) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1916 /organism="Thorea violacea" /db_xref="taxon:67961" primer_bind 1..20 rRNA 1..1916 /product="18S rRNA" primer_bind complement(1889..1916) BASE COUNT 467 a 392 c 545 g 512 t BASE COUNT 467 a 392 c 545 g 512 t 1357 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugc<-- -uaacu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|guuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-a- gcau--(--- 1921 --uacg---- -------)-a ugac-ucguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|uguua-c aca--(uguu ---------- 2401 ---------- ---------- -----)-ugu g-ua-g-c-| u-ca-gaagc aauagagguu 2461 uuuucuuuu- cuuuuc-uuu ucuuucuuuu uuuc-cuuug a(gcaa)uug aag-ggggag 2521 agguuugaaa aaggaaugga acggagacuc cuuacucaug uuguuuugu| gc-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uuu------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-ugcug- cg-a-ucg-g 3061 a-gug----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-aaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Tuo.americ 3273 bp RNA RNA 05-NOV-1997 DEFINITION Tuomeya americana.. ACCESSION No information KEYWORDS No information. SOURCE Tuomeya americana. ORGANISM Tuomeya americana. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026055 LOCUS AF026055 1765 bp DNA PLN 05-NOV-1997 DEFINITION Tuomeya americana 18S ribosomal RNA gene, complete sequence. ACCESSION AF026055 NID g2564938 KEYWORDS . SOURCE Tuomeya americana. ORGANISM Tuomeya americana Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Tuomeya. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Tuomeya americana" /db_xref="taxon:67916" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 422 a 383 c 522 g 438 t BASE COUNT 422 a 383 c 522 g 438 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Bonnem 3273 bp RNA RNA 24-JAN-191 DEFINITION Bonnemaisoniales. ACCESSION No information KEYWORDS No information. SOURCE Bonnemaisoniales. ORGANISM Bonnemaisoniales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Bon.hamife 3273 bp RNA RNA 24-JAN-191 DEFINITION Bonnemaisonia hamifera. ACCESSION No information KEYWORDS No information. SOURCE Bonnemaisonia hamifera. ORGANISM Bonnemaisonia hamifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26182 LOCUS BMNFRA 1764 bp ds-DNA PLN 30-JUN-1994 DEFINITION Bonnemaisonia hamifera DNA fragment. ACCESSION L26182 KEYWORDS PCR primer. SOURCE Bonnemaisonia hamifera DNA. ORGANISM Bonnemaisonia hamifera Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Bonnemaisoniales; Bonnemaisoniaceae. REFERENCE 1 (bases 1 to 1764) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507222 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1738..1764 /standard_name="PCR primer" /note="putative" source 1..1764 /organism="Bonnemaisonia hamifera" /sequenced_mol="DNA" BASE COUNT 422 a 378 c 528 g 436 t ORIGIN BASE COUNT 422 a 378 c 528 g 436 t 1509 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-a cu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucgaugg<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu ccga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- CAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGCUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-g- ggcug-(--- 1921 --uuuu---- -------)-- uggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gguua-c cg---(auuu c--------- 2401 ---------- ---------- -----)--ug g-ua-g-cc| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gggc(--gaa a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-c-aga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----ug uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG