LOCUS E.coli.ref 3273 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 3273) Corresponding GenBank entry: REFERENCE - J01695 Phylo:Eubacteria,Purple,gamma,3 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 1731 others ORIGIN 1 |~AAAUUGAA GAGUU(UGA) UCAU|GGCUC AGAU-UGAAC GCUGGCGGCA GG|C-CUAAC 61 ACAUGCAAGU CG-AACG|GU AACAG|GAAG AAG(CUUG)[ ---------- ---------- 121 ---------- ------]CUU CUUUGCUG|A CGAGU|GGCG GACGGGUGAG UAAUGUCUGG 181 GA--AACUGC CUGAUGG<-- ---------- --->AGGGGG -AUAACUACU G(G-A-AA)C 241 GGUAGCUAA- UACCGCAUAA CGUC(GCAA) GACCAAAGAG GGGGACC(UU CG)GG|CCUC 301 UU<------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ->GCCAUCGG AU-GU|GCCC AGAU|GGGAU 601 UAGCUA---G UAGGUGGG-( GUAACGG)-C UC-ACCUA|G G-CGA-CGAU |CCCU-AGCU 661 G|GUC-U(GA GA)GGAUGAC C-AGC|CACA CUGGAAC(UG AG-ACAC)GG UCCAGACUCC 721 (-UACG-)GG A-GGCAGCA| GUG--GG-GA AUAUUGCAC- AAUGGG-C(G CAA)GCCUG- 781 A-UGC|A|-G CCAUGCCGCG UGuAUGAAGA AGGCC(UUCG )GGUUGUAAA GUAC|UUUC| 841 AGCGGGGAGG AAGGGAGUAA AG(UUAAUAC )CUUUGCUCA UUGACGUUAC CCGCAGAAG< 901 ---------- ---------- ---------- ---------- ---------| -----(---- 961 ----)---|- ---------- --->AAGCAC C-|GGCUA-A CU-CCGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACGG-AG|-G GUGCAAGCGU U|AAUCGG-A AUUA--CUGG GC|GUAAAGC 1081 GCACGCAGGC G|GUUUGUUA AG|UCAGAUG UGAAAUCCCC GGG(CUCAA) CCUGGGAACU 1141 GCAUCUGAUA CU|GGCAAGC <--------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- --------|- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 |--------- ---------- ---------- ---------- ---->UUGAG UC|UCGU-A- 1681 GAGGGGGGU| AGA-AUUCCA -GGU--GU-A GC-G(GU-GA AA---)UGCG -UAGA-G-AU 1741 C-UGG-AGG- A-AUA-C-CG GUGGC(-GAA G)GC|GGCCC CCUG|G-ACG AAGACUGACG 1801 CU|CA-GGUG CGAAA----- GCGUGGGGAG CAAA--CAG- G(A-UUAG-A -UAC)C-CUG 1861 GUAGU|CCAC -GCC-GUAAA CGAUGUCGAC |UU|-GGAG- GUUGUGC-C- ------(--- 1921 --CUUGA--- -------)-- -----GGCGU GGC-UUCCG- -GAGC(-UAA C)GCGUUAAG 1981 UC-----GAC |-C|GCCUGG -GGAGUAC-G GCC(GCAA)G GUU-A-AAA- -CUCAAAUGA 2041 AUUG|ACGGG GGCCCGC-AC -AAGCGGU|G GAGCAUGUG| GUUUAAUUCG (AUGCAACG) 2101 CGAA-GAACC UUACCUGGUC [--------- ---------- ---------- ---------- 2161 ---------- --------]U UGACAUC|CA CGGAAGUUUU CA(GAGA)UG AGAAUGUGCC 2221 (UUCG)GGAA |CCGUGAGAC |AGGU-GCUG CAUG|GCU-| GU-CGUCA|G CUCGU|GUU- 2281 (GUGA)-AAU GUUGGG(UUA AGU)CCCGCA ACGAGCGCAA CCCUUA|UCC UUUGUUGCCA 2341 GCGG(UCCGG )[-------- ---------- --|------- ---------- ---------- 2401 ---------- ---------- -----)---- ---------| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ---------- 2581 -------]CC G|GGAACUCA AAGGAGACUG CCA-GU(--- ---------- ----GAUAA- 2641 )ACUGGAGGA AGGUGGGGAU GACGUCAAGU CAUC-A|UGG C|CC-UU-AC G-ACCAGGGC 2701 UACACACGUG -CUA-CAAUG GCGCAUACAA AGAGAAGCGA CCUC(GCGA) [--------- 2761 ---------- -|-------- ---------- ---------- ---------- |--------- 2821 ---------- ---------- ---------- -----]GAGC AAGCGGACCU CAUAAAGUGC 2881 GUC-GUAGUC CGGAUUGGAG UC(UGCAACU C)GACU-CCA UGAAGUCGGA AUCGCUAGUA 2941 AUCGU-GGA( UCAGAAU)GC CACGG-UGAA UACGU-UCCC GGGCCU|UGU ACACACCGCC 3001 CGUCACACCA UGGGAG-UGG GUUGCAAAAG AAG-UAGGUA GCU-UAACC- ---------- 3061 ---------- ---------- ---------- --(UUCG--- -)-------- ---------- 3121 ---------- ---------- ---------- ---------- GGA-GGGC|G CUUACC-ACU 3181 UUGUGAUUCA UGACUGGGGU GAAG-UCGUA ACAAGGUAA- CCGUAGG(GG AA)CCUGCGG 3241 UUGGAUCACC UCCUUA~~~~ ~~~~~~~~|| ||| // LOCUS mask 3273 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |~EEEEEEEE EEEEE(EEE) EEEE|xxxxx xxxxxxxxxx xxxxxxxxxx xx|xxxxxxx 61 xxxxxxxxxx xxxxxxx|qq qqqqq|qqqq qqq(qqqq)[ bbbbbbbbbb bbbbbbbbbb 121 bbbbbbbbbb bbbbbb]qqq qqqqqqqq|q qqxxx|qxxx xxxxxxxxxx xxxxxxxxxx 181 xxxxxxxxxx xxxxxxxxxxxxx xxxxxxxxxx x(xxxxxx)x 241 xxxxxxxxxx xxxxxxqqqq qqqq(qqqq) qqqqqqqqqq qqqqqqq(qq qq)qq|qqqq 301 qqxxxxxxxx xxxxx|xxxx xxxx|xxxxx 601 xxxxxxxxxx xxxxxxxxx( xxxxxxx)xx xxxxxxxx|x xxxxxxxxxx |xxxxxxxxx 661 x|xxxxx(xx xx)xxxxxxx xxxxx|xxxx xxxxxxx(xx xxxxxxx)xx xxxxxxxxxx 721 (xxxxxx)xx xxxxxxxxx| xxxxxxxxxx xxxxxxxxxx xxxxxxxx(x xxx)xxxxxx 781 xxxxx|x|xx xxxxxxxxxx xqqqqqqqqq qqqqq(qqqq )qqqqqqqqq qqqq|qqqq| 841 qqqqqqqqqq qqqqqqqqqq qq(qqqqqqq )qqqqqqqqq qqqqqqqqqq qqqqqqqqq< 901 xxxxxxxxxx xxxxxxx(xx xxx)xxxxxx xxxxxxxxxx xxxxxxxxx| xxxxx(xxxx 961 xxxx)xxx|x xxxxxxxxxx xxx>xxxxxx xx|xxxxxxx xxxxxxxxx( xxxxxxxxxx 1021 |xxxxxxx)x xxxxxxx|xx xxxxxxxxxx x|xxxxxxxx xxxxxxxxxx xx|xxxxxxx 1081 xxxxxxxxxx x|qqqqqqqq qq|qqqqqqq qqqqqqqqqq qqq(qqqqq) qqqqqqqqqq 1141 qqqqqqqqqq qq|qqqqqqq qqqxx xx|xxxxxxx 1681 xxxxxxxxx| xxxxxxxxxx xxxxxxxxxx xxxx(xxxxx xxxxx)xxxx xxxxxxxxxx 1741 xxxxxxxxxx xxxxxxxxxx xxxxx(xxxx x)xx|xxxxx xxxx|xxxxx xxxxxxxxxx 1801 xx|xxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx x(xxxxxxxx xxxx)xxxxx 1861 xxxxx|xxxx xxxxxxxxxx xxxxxxxxxx |xx|xxxxxx xxxxxxxxbb bbbbbb(bbb 1921 bbbbbbbbbb bbbbbbb)bb bbbbbbxxxx xxxxxxxxxx xxxxx(xxxx x)xxxxxxxx 1981 xxxxxxxxxx |xx|xxxxxx xxxxxxxxxx xxx(xxxx)x xxxxxxxxxx xxxxxxxxxx 2041 xxxx|xxxxx xxxxxxxxxx xxxxxxxx|x xxxxxxxxx| xxxxxxxxxx (xxxxxxxx) 2101 xxxxxxxxxx xxxxxxxxxx [xxxxxxxxx xxxxxxxxxx xxxxxxx(xx xxxxxxxx)x 2161 xxxxxxxxxx xxxxxxxx]q qqqqqqq|qq qqqqqqqqqq qq(qqqq)qq qqqqqqqqqq 2221 (qqqq)qqqq |qqqqqqqqq |xxxxxxxxx xxxx|xxxx| xxxxxxxx|x xxxxx|xxxx 2281 (xxxx)xxxx xxxxxx(xxx xxx)xxxxxx xxxxxxxxxx xxxxxx|qqq qqqqqqqqqq 2341 qqqq(qqqqq )[xxxxxxxx xxxxxxxxxx xx|bbbbbbb bbbbb(bbbb bbbbbbbbbb 2401 bbbbbbbbbb bbbbbbbbbb bbbbb)bbbb bbbbbbbbb| bbbbbbbbbb bbbbbbbbbb 2461 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbb-bbb bbbbbbbbbb 2521 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbb| xxxxxxxxxx 2581 xxxxxxx]qq q|qqqqqqqq qqqqqxxxxx xxxxxx(xxx xxxxxxxxxx xxxxxxxxxx 2641 )xxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxx|xxx x|xxxxxxxx xxxxxxxxxx 2701 xxxxxxxxxx xxxxxxxxxx xxxxxxqqqq qqqqqqqqqq qqqq(qqqq) [xxxxxxxxx 2761 xxxxbbbbbb b|bbbbbbbb bbbb(bbbbb bb)bbbbbbb bbbbbbbbbb |bbbbxxxxx 2821 xxxx(xxxxx xx)xxxxxxx xxxxxxxxxx xxxxx]qqqq qqqqqqqqqq qqqqqqxxxx 2881 xxxxxxxxxx xxxxxxxxxx xx(xxxxxxx x)xxxxxxxx xxxxxxxxxx xxxxxxxxxx 2941 xxxxxxxxx( xxxxxxx)xx xxxxxxxxxx xxxxxxxxxx xxxxxx|xxx xxxxxxxxxx 3001 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxbbbbbbb bbbbbbbbbb 3061 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bb(xxxxxxx x)bbbbbbbb bbbbbbbbbb 3121 bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb bbbbbbbbbb xxxxxxxx|x xxxxxxxxxx 3181 xxxxxxxxxx xxxxxxxxxx xxxxxEEEEE EEEEEEEEEE EEEEEEE(EE EE)EEEEEEE 3241 EEEEEEEEEE EEEEEE~~~~ ~~~~~~~~|| ||| // LOCUS (2)-crown 3273 bp RNA RNA 13-JAN-1999 DEFINITION Eukaryote crown group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote crown group. ORGANISM Eukaryote crown group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (3)-Rhodop 3273 bp RNA RNA 13-JAN-1999 DEFINITION Rhodophyta. ACCESSION No information KEYWORDS No information. SOURCE Rhodophyta. ORGANISM Rhodophyta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (4)-Bangio 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangiophyceae. ACCESSION No information KEYWORDS No information. SOURCE Bangiophyceae. ORGANISM Bangiophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (5)-Bangia 3273 bp RNA RNA 08-JAN-1999 DEFINITION Bangiales. ACCESSION No information KEYWORDS No information. SOURCE Bangiales. ORGANISM Bangiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .........< 901 .......... .......... .......... .......... .........| .....(.... 961 ....)...|. .......... ...>...... .......... .......... .........- 1021 .......... .......|.. .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .--......- .........- .......... .......... .......... .........- 1261 .....-..-- --........ .......... .......... .......... .......... 1321 .......... .......... .......... .....----. .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .........- .......... .......... .......... .......... .......... 1681 .....-.... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......|.. 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... -......... .......... 2161 .......... ]......... .......... .......... .......... .......... 2221 .......... .......... .......... -......... .......... .-......-. 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ....|..... .......... .......... 2401 .......... .......... .......).. .......... .|........ .......... 2461 .......... .......... .......... ........(. ..)....... ....-..... 2521 .......... .......... .......... .......... .......... .|........ 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Ban.fuscop 3273 bp RNA RNA ~?~???? DEFINITION Bangia fuscopurpurea. ACCESSION No information KEYWORDS No information. SOURCE Bangia fuscopurpurea. ORGANISM Bangia fuscopurpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF342745 BASE COUNT 462 a 379 c 490 g 490 t 1452 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuc)AGGUCU -U-CU-AAUU GGAAUGAGA| ACAAC(UUUA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguu--(cua 1921 uuugau---- -------)-- -gac-cccgu cagcacccu- -gaGG(-GAG A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u cccg-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------g| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGCAUGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |uaguccu-u 2821 ggcc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augg---- ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ----cca-ga -gcg----cc ag-cc----- gug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AG~~~~~ ~~~~~~~~|| ||| // LOCUS Por.leuc.2 3273 bp RNA RNA ~?~???? DEFINITION Porphyra leucosticta (Baltic). ACCESSION No information KEYWORDS No information. SOURCE Porphyra leucosticta (Baltic). ORGANISM Porphyra leucosticta (Baltic). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF342746 BASE COUNT 463 a 394 c 499 g 478 t 1439 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UGGUGA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uug-gga--- -acaac--a- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU C-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- ggca--(cua 1921 uuauau---- ---------- -gac-uccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --uc------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGUGC-CGAA UACGC-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Ban.atro.1 3273 bp RNA RNA 10-OCT-1994 DEFINITION Bangia atropurpurea.; PCR identification; group I intron; group I self-splicing intron; ribosomal RNA; ribosomal RNA small subunit. ACCESSION L36066 KEYWORDS PCR identification; group I intron; group I self-splicing intron; ribosomal RNA; ribosomal RNA small subunit. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 2863) AUTHORS Singh,R.K., Gutell,R.R. and Ragan,M.A. Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., TITLE Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences An investigation of order Bangiales (Bangiophycidae, JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L36066 BASE COUNT 461 a 392 c 497 g 476 t 1447 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UCAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUCUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.AK 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Alaska/AK). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Alaska/AK). ORGANISM Bangia sp. (Alaska/AK). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 1476 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.GLD 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Greenland/GLD). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Greenland/GLD). ORGANISM Bangia sp. (Greenland/GLD). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 1476 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NH 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (New Hampshire/NH). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (New Hampshire/NH). ORGANISM Bangia sp. (New Hampshire/NH). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043353 LOCUS AF043353 1796 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043353 NID g3335111 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1796) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1796) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1796 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from New Hampshire" rRNA 1..>1796 /product="18S ribosomal RNA" BASE COUNT 456 a 380 c 486 g 472 t 2 others BASE COUNT 456 a 380 c 486 g 472 t 1479 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAYUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG YUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA C-UCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NWT 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Northwest Territories/NWT). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Northwest Territories/NWT). ORGANISM Bangia sp. (Northwest Territories/NWT). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 1476 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.RI 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Rhode Island/RI). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Rhode Island/RI). ORGANISM Bangia sp. (Rhode Island/RI). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043354 LOCUS AF043354 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043354 NID g3335112 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Rhode Island" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 455 a 380 c 484 g 473 t 5 others BASE COUNT 455 a 380 c 484 g 473 t 1481 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU UU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-gguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-YGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-KC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAKUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|UCUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- ggca--(-cu 1921 acuuga---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAKU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- yu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BI1 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (England River Thames/BI12). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (England River Thames/BI12). ORGANISM Bangia sp. (England River Thames/BI12). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.GL 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Great Lakes/GL). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Great Lakes/GL). ORGANISM Bangia sp. (Great Lakes/GL). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.IRF 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Ireland freshwater/IRF). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Ireland freshwater/IRF). ORGANISM Bangia sp. (Ireland freshwater/IRF). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.ITF 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Italy freshwater/ITF. ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Italy freshwater/ITF. ORGANISM Bangia sp. (Italy freshwater/ITF. REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.SIM 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Lake Simcoe/SIM) subsp. Lake Simcoe, Ontario. ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Lake Simcoe/SIM) subsp. Lake Simcoe, Ontario. ORGANISM Bangia sp. (Lake Simcoe/SIM). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 1470 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-c uu-------- 121 --uauac-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUACcaguu 181 au-aguuccu uugaacg<-- -ugucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aaa)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-ACCG(cu uuc)CGGCCU -U-CU-AAUU GGAAUGAGA| AAAAU(G-UA 961 AAGA)UGU|U -GUCGA-GG- ACC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUA--CU-A GA-G(GU-GA AA---)UUCU -GAGA-C-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uugacgg-g- ggcu--(-cu 1921 agauaa---- -------)-- -cgacuccgu cagcacccu- -uaGG(-GAA A)CCa--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(uu -aagag-a)a 2161 cuuucuugau uuucuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUACUAA AU-agau-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u acug-u-gc| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| uu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACCA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGCUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |auguccu-g 2821 gauc(--gga a-)gaucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-CGG( UCAUCAC)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugaucg gau-uaugg- cu-c-cgg-u 3061 a-auggga-- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----gg ag-cc----- aug-aaaa|g gucauuaaau 3181 cuuaccguuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BC1 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Northern British Columbia/BC1). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Northern British Columbia/BC1). ORGANISM Bangia sp. (Northern British Columbia/BC1). REFERENCE 1 (bases 1 to 2863) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043360 LOCUS AF043360 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043360 NID g3335118 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from northern British Columbia" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 460 a 375 c 481 g 488 t 3 others BASE COUNT 460 a 375 c 481 g 488 t 1469 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-KGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCU(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-CAA A)GC|AUCUG CCAU|G-GAK GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcuu--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUA GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CUUCGU|--- ---------- 2341 ----(----- )[CCUGAUAA AU-agau-gu --|gcgca-u g----(ccas ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gua----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.atro.2 3273 bp RNA RNA 05-NOV-1996 DEFINITION Bangia atropurpurea.; 18S ribosomal RNA. ACCESSION D88387 KEYWORDS 18S ribosomal RNA. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (14-OCT-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information REFERENCE 2 (bases 1 to 3004) AUTHORS Shimomura,K., Yamazaki,S., Miyata,T. and Saga,N. TITLE Phylogenetic position of Bangia atropurpurea (Bangiales, Rhodophyta) based on the 18S rDNA sequence JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D88387 BASE COUNT 466 a 384 c 492 g 490 t 1441 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAAAU(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAGG)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- auc)CGGGGG 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcuacu(--- 1921 -auuua---- -------)-a uga-ccucgu cagcacccu- -gaGG(-GAA A)CCa--GAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BC2 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Victoria/BC2). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Victoria/BC2). ORGANISM Bangia sp. (Victoria/BC2). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043359 LOCUS AF043359 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043359 NID g3335117 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Victoria, British Columbia" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 375 c 484 g 489 t BASE COUNT 459 a 375 c 484 g 489 t 1466 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -ucuuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- gcua--(-cu 1921 auuaaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gccc(--gga a-)ggucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-aaaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.CA 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (California/CA). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (California/CA). ORGANISM Bangia sp. (California/CA). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043356 LOCUS AF043356 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043356 NID g3335114 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from California" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 372 c 485 g 490 t 1 others BASE COUNT 459 a 372 c 485 g 490 t 1467 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -ucuuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- gcua--(-cu 1921 auuaaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUYGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)ggucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-aaaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.TX 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Texas/TX). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Texas/TX). ORGANISM Bangia sp. (Texas/TX). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043361 LOCUS AF043361 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043361 NID g3335119 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Texas" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 458 a 376 c 484 g 489 t BASE COUNT 458 a 376 c 484 g 489 t 1466 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCU(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcuu--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gua----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NF 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Newfoundland/NF). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Newfoundland/NF). ORGANISM Bangia sp. (Newfoundland/NF). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043357 LOCUS AF043357 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043357 NID g3335115 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Newfoundland" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 378 c 482 g 481 t 7 others BASE COUNT 459 a 378 c 482 g 481 t 1473 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUCU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAW-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UNGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcua--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.OR 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Oregon/OR). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Oregon/OR). ORGANISM Bangia sp. (Oregon/OR). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043358 LOCUS AF043358 1806 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043358 NID g3335116 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1806) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1806) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1806 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Oregon" rRNA 1..>1806 /product="18S ribosomal RNA" BASE COUNT 461 a 376 c 482 g 487 t BASE COUNT 461 a 376 c 482 g 487 t 1467 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUUA-UAU GCUUGUCUCA AA|GGCUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACCUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUCGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auc)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG AG-GCCA(-u uua)CGGUUU -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUC--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcga-g- gcua--(-cu 1921 auuuaa---- -------)-- -ugaccucgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA C-UCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agau-gu --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gu-au-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuccacuuu a|-------- ---------- ---------- ---------- |cagcccu-g 2821 ggcc(--gga a-)guccu-g gguaaucuuu ugaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UUAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguccg gau-cgugg- cu-a-gug-u 3061 g-auggaa-- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --uucca-ga -gca----cg ug-cu----- uug-agaa|g ugcauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.MA 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Massachusetts/MA). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Massachusetts/MA). ORGANISM Bangia sp. (Massachusetts/MA). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043362 LOCUS AF043362 1790 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043362 NID g3335120 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1790) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1790 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Massachusetts" rRNA 1..>1790 /product="18S ribosomal RNA" BASE COUNT 457 a 372 c 477 g 483 t 1 others BASE COUNT 457 a 372 c 477 g 483 t 1484 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuc)AGGUCU -U-CU-AAUU GGAAUGAGA| ACAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGC-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|UUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguu--(-cu 1921 auuuga---- -------)-- -ugaccccgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAAA CCUUAU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u ccug-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |uaguccu-u 2821 ggcc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augg---- ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ----cca-ga -gcg----cc ag-cc----- gug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NC 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (North Carolina/NC). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (North Carolina/NC). ORGANISM Bangia sp. (North Carolina/NC). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043363 LOCUS AF043363 1789 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043363 NID g3335121 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1789) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1789) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1789 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from North Carolina" rRNA 1..>1789 /product="18S ribosomal RNA" BASE COUNT 454 a 372 c 479 g 484 t BASE COUNT 454 a 372 c 479 g 484 t 1484 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacac-u uu-------- 121 --uauac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuc)AGGUCU -U-CU-AAUU GGAAUGAGA| ACAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguu--(-cu 1921 auuuga---- -------)-- -ugaccccgu cagcacccu- -gaGG(-GAA A)CCa--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-aggu-gu --|gcgca-u g----(cuug ---------- 2401 ---------- ---------- -----)---u ccug-c-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug u|-------- ---------- ---------- ---------- |uaguccu-u 2821 ggcc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augg---- ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ----cca-ga -gcg----cc ag-cc----- gug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.VIS 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Virgin Islands/VIS7). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Virgin Islands/VIS7). ORGANISM Bangia sp. (Virgin Islands/VIS7). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF043364 LOCUS AF043364 1804 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043364 NID g3335122 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1804) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1804) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1804 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from the Virgin Islands" rRNA 1..>1804 /product="18S ribosomal RNA" BASE COUNT 457 a 371 c 496 g 480 t BASE COUNT 457 a 371 c 496 g 480 t 1469 others ORIGIN 1 |~~~~~CAAC CUGAU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-c uu-------- 121 --uauac-u- guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -uaacu-uu- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)UGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uug)CGGUCU -U-CU-AAUU GGAAUGAGA| UGAUU(C-CA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-A( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|UU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UUGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CCAUGCCGAC |UG|-GGga- uugacau-g- ggca--(-ca 1921 acuuga---- -------)-- -ugaccgugu cagcacccu- -ggGG(-GAA A)CCa--AAG 1981 UC-ucugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-agga-gu --|gcgcaug ugu--(uucg ---------- 2401 ---------- ---------- -----)-gca c-ug-u-gu| --a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ag-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacucu u|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)gcccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-ugucug gau-cgugg- cu-a-gug-u 3061 g-acgga--- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- ---uccg-ga -gca----ug gg-cc----- gug-aaaa|a gauauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umbi.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra umbilicalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis. ORGANISM Porphyra umbilicalis. REFERENCE 1 (bases 1 to 3004) AUTHORS Neefs et.al. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X53500 LOCUS PTERRNAG 1770 bp ss-mRNA PLN 02-DEC-1991 DEFINITION P.umbilicalis small ribosomal RNA coding region ACCESSION X53500 KEYWORDS small subunit ribosomal RNA. SOURCE Porphyra umbilicalis RNA. ORGANISM Porphyra umbilicalis Eukaryota; Fungi; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1770) AUTHORS Hendriks,L., De Baere,R., Van de Peer,Y., Neefs,J.M., Goris,A. and De Wachter,R. TITLE The evolutionary position of the rhodophyte Porphyra umbilicalis and the basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequence of small ribosomal subunit RNA JOURNAL J. Mol. Evol. 32, 167-177 (1991) STANDARD full automatic COMMENT *source: clone=pUC18; From EMBL entry PURRNAG; dated 17-OCT-1991. BASE COUNT 426 a 384 c 516 g 444 t ORIGIN BASE COUNT 426 a 384 c 516 g 444 t 1503 others ORIGIN 1 |~~~~~U-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uua--cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GC|CGGU-U- 1681 GGGGGCAUU| UGU-AUU-CA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GAUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggca-g- gcau--(--- 1921 uac-ga---- -------)-- -ugaccuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGUUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGG-gc --|-c-gc-u ac---(cauu g-u------- 2401 ---------- ---------- -----)--gu a-gc-u-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gc-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ---------- ---------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 ---ggcg--- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- ---cgcc--- --ug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAGaUCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUC~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.R 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra spiralis var. amplifolia subsp. Porphyra spiralis R.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis var. amplifolia subsp. Porphyra spiralis R. ORGANISM Porphyra spiralis var. amplifolia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26177 LOCUS P.spir.amp.gb 2890 bp ds-DNA PLN 03-JAN-1994 DEFINITION Porphyra spiralis var. amplifolia DNA sequence. ACCESSION L26177 KEYWORDS . SOURCE Porphyra spiralis (individual_isolate PSA-R/Ilha do Cardoso, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 2890) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. (1994) In press STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..22 /note="PCR; putative" intron 1805..2860 /evidence=EXPERIMENTAL /label=Group_I_intron primer_bind complement(2864..2890) /note="PCR; putative" source 1..2890 /organism="Porphyra spiralis" /isolate="PSA-R/Ilha do Cardoso" /variety="amplifolia" /sequenced_mol="DNA" BASE COUNT 729 a 643 c 802 g 716 t ORIGIN BASE COUNT 470 a 389 c 491 g 485 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UACAAcaguu 181 au-aguuccu uugagaa<-- ---ucg-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CGU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcua--(-ca 1921 cuuuca---- -------)-- -cguccacgu cagcacccu- -auGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu a|-------- ---------- ---------- ---------- |caguccu-g 2821 ggcc(--gaa a-)ggcuc-g gguaaccauu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguuug gau-ugcgg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gua----au ag-cc----- gug-aaaa|g aucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.sub.pk 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra suborbiculata. str. pk-49. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. str. pk-49. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 3004) AUTHORS Hong,Y.K. TITLE suborbiculata Nucleotide sequence of the 18s rDNA from Porphyra JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117239 LOCUS AF117239 1777 bp DNA PLN 29-APR-1999 DEFINITION Porphyra suborbiculata 18S ribosomal RNA gene, partial sequence. ACCESSION AF117239 NID g4704700 VERSION AF117239.1 GI:4704700 KEYWORDS . SOURCE Porphyra suborbiculata. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1777) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from Porphyra suborbiculata JOURNAL Unpublished REFERENCE 2 (bases 1 to 1777) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (30-DEC-1998) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1777 /organism="Porphyra suborbiculata" /strain="pk-49" /db_xref="taxon:76158" rRNA <1..>1777 /product="18S ribosomal RNA" BASE COUNT 462 a 352 c 469 g 494 t BASE COUNT 462 a 352 c 469 g 494 t 1496 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaa-u-cu -c-------- 121 ---auac-u- uuga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aauuuau uugauag<-- -ucccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-A AUCGUAUG-( GUAUUGG)-C UU-ACGAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGCU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GUCU(-u ugu)AGAUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |CCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| GCU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CG-AA-GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGGC |AA|-GGga- uuggcgg-u- cguu--(-gu 1921 au-------- -------)-- -ugaccccgu cagcaccuu- -auGA(-GAA A)UCAC-AAG 1981 UC-uuugGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA GGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 aug-cUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cugauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umb.HF 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra umbilicalis High Form. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis High Form. ORGANISM Porphyra umbilicalis High Form. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26202 LOCUS PTEFRE 1819 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra umbilicalis DNA fragment. ACCESSION L26202 NID g507795 KEYWORDS PCR amplified. SOURCE Porphyra umbilicalis (strain high-interdial form) DNA. ORGANISM Porphyra umbilicalis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1819) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1819 /organism="Porphyra umbilicalis" /strain="high-interdial form" /db_xref="taxon:2786" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1793..1819 /standard_name="PCR primer" /note="putative" BASE COUNT 471 a 369 c 485 g 493 t 1 others BASE COUNT 471 a 369 c 485 g 493 t 1455 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACRUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- auu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguuc-(--- 1921 --aguu---- -------)ga augauccugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGGU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCCgaug aaa-uguucg gau-ugugg- cg-u-gcg-u 3061 g-augga--- ---------- ---------- --(uau---- -)-------- ---------- 3121 ---------- ---ccca-ua -gcg----ua cg-uc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Por.den.KF 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka. ORGANISM Porphyra dentata. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013183 LOCUS AB013183 3037 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra dentata gene for small subunit rRNA, isolate Koga Fukuoka. ACCESSION AB013183 NID g3298494 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra dentata gametophyte thallus DNA. ORGANISM Porphyra dentata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3037 /organism="Porphyra dentata" /note="collection_site: Koga Fukuoka" /db_xref="taxon:76160" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3037 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1198 /note="putative" exon 1199..2435 /note="putative" /product="SSU rRNA" intron 2436..3007 /note="group I intron; putative" exon 3008..3037 /note="putative" /product="SSU rRNA" BASE COUNT 772 a 674 c 851 g 740 t BASE COUNT 462 a 390 c 494 g 489 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcuu--(-cu 1921 aauuua---- -------)-- -uguccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUACUAA AU-Aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 aguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-g-cug-u 3061 g-auggac-- ---------- ---------- --(cca---- -)-------- ---------- 3121 ---------- --gucca-ga -gug----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sp.SY 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013182 LOCUS AB013182 3048 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra sp. gene for small subunit rRNA, isolate Shimonoseki Yamaguchi. ACCESSION AB013182 NID g3298493 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra sp. gametophyte thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3048 /organism="Porphyra sp." /note="collection_site: Shimonoseki Yamaguchi" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3048 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..569 /note="putative" /product="SSU rRNA" intron 570..1128 /note="putative" exon 1129..2364 /note="putative" /product="SSU rRNA" intron 2365..3018 /note="group I intron; putative" exon 3019..3048 /note="putative" /product="SSU rRNA" BASE COUNT 780 a 678 c 859 g 731 t BASE COUNT 467 a 391 c 497 g 480 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cac-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 aguaaa---- -------)-- -ugaccacgu cagcacccu- -guGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGAU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---c acug-u-gc| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| cg-au-cUUC 2581 UUAGAGG]-- -|-------- -----GACUG UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUACGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 gauc(--gga a-)gcccc-g gguaaucuuu ugaaa]---- ---------- ------uagc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- aug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ampl.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra amplissima. ACCESSION No information KEYWORDS No information. SOURCE Porphyra amplissima. ORGANISM Porphyra amplissima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L36048 LOCUS PTERRNA 1833 bp DNA PLN 31-AUG-1994 DEFINITION Porphyra amplissima small subunit ribosomal RNA (rDNA) gene. ACCESSION L36048 NID g533257 KEYWORDS PCR identification; ribosomal RNA; ribosomal RNA small subunit. SOURCE Porphyra amplissima (individual_isolate Sandy Cove, Halifax County, Nova Scotia) DNA. ORGANISM Porphyra amplissima Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1833) AUTHORS Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., Singh,R.K., Gutell,R.R. and Ragan,M.A. TITLE An investigation of order Bangiales (Bangiophycidae, Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences JOURNAL Unpublished (1994) COMMENT NCBI gi: 533257 FEATURES Location/Qualifiers source 1..1833 /organism="Porphyra amplissima" /isolate="Sandy Cove, Halifax County, Nova Scotia" /sequenced_mol="DNA" primer_bind complement(1..22) /note="putative" primer_bind 1810..1833 /note="putative" BASE COUNT 464 a 386 c 493 g 490 t ORIGIN BASE COUNT 464 a 386 c 493 g 490 t 1440 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 --uauac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---cac-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GCCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuuga---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUACUAA AU-Aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 ggcc(--gga a-)ggcuu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-guGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-ugcgg- cu-u-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcc----gu ag-cc----- gug-agaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGAA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.hait.2 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra haitanensis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015795 LOCUS AB015795 2354 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, partial sequence. ACCESSION AB015795 NID g3986217 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra haitanensis DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2354) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2354 /organism="Porphyra haitanensis" /db_xref="taxon:76159" rRNA join(<1..557,1120..>2354) /product="small subunit rRNA" primer_bind 1..22 intron 558..1119 /note="intron-like structure" primer_bind 2335..2354 BASE COUNT 591 a 518 c 659 g 586 t BASE COUNT 453 a 384 c 483 g 470 t 1483 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAG------- -------UCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUA-U|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcuu--(-cu 1921 aauuca---- -------)-- -uguccacgu cagcacccu- -aaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-cug-u 3061 g-augga--- ---------- ---------- --(cucug-- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gc ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.hai.YE 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013181 LOCUS AB013181 2391 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, isolate Yuge Ehime. ACCESSION AB013181 NID g3298492 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra haitanensis gametophyte thallus DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2391 /organism="Porphyra haitanensis" /note="collection_site: Yuge Ehime" /db_xref="taxon:76159" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2391 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..1807 /note="putative" /product="SSU rRNA" intron 1808..2361 /note="group I intron; putative" exon 2362..2391 /note="putative" /product="SSU rRNA" BASE COUNT 600 a 526 c 681 g 584 t BASE COUNT 462 a 393 c 497 g 485 t 1436 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gcuu--(-cu 1921 aauuca---- -------)-- -uguccacgu cagcacccu- -aaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-Aggu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-cug-u 3061 g-augga--- ---------- ---------- --(cucug-- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gc ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR053.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136427 LOCUS AF136427 1748 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate SSR053 18S ribosomal RNA gene, partial sequence. ACCESSION AF136427 NID g5579326 VERSION AF136427.1 GI:5579326 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1748) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1748) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1748 /organism="Porphyra sp." /isolate="SSR053" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA <1..>1748 /product="18S ribosomal RNA" BASE COUNT 437 a 364 c 476 g 470 t 1 others BASE COUNT 437 a 364 c 476 g 470 t 1526 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- --cac--ua- n-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggua--(-cu 1921 auuuaa---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AA- 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.kat.KY 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ACCESSION No information KEYWORDS No information. SOURCE Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ORGANISM Porphyra katadae. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013184 LOCUS AB013184 3024 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra katadae gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013184 NID g3298495 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra katadae gametophyte thallus DNA. ORGANISM Porphyra katadae Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3024 /organism="Porphyra katadae" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76161" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3024 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1169 /note="putative" exon 1170..2406 /note="putative" /product="SSU rRNA" intron 2407..2994 /note="group I intron; putative" exon 2995..3024 /note="putative" /product="SSU rRNA" BASE COUNT 758 a 677 c 856 g 733 t BASE COUNT 459 a 389 c 498 g 489 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cca-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- gaca--(-cu 1921 auuuga---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.kunied 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra kuniedai. str. pk-50. ACCESSION No information KEYWORDS No information. SOURCE Porphyra kuniedai. str. pk-50. ORGANISM Porphyra kuniedai. REFERENCE 1 (bases 1 to 3004) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from seaweed Porphyra kuniedai JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123051 LOCUS AF123051 1785 bp DNA PLN 29-APR-1999 DEFINITION Porphyra kuniedai 18S ribosomal RNA gene, partial sequence. ACCESSION AF123051 NID g4704733 VERSION AF123051.1 GI:4704733 KEYWORDS . SOURCE Porphyra kuniedai. ORGANISM Porphyra kuniedai Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1785) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from seaweed Porphyra kuniedai JOURNAL Unpublished REFERENCE 2 (bases 1 to 1785) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (22-JAN-1999) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1785 /organism="Porphyra kuniedai" /strain="pk-50" /db_xref="taxon:91199" rRNA <1..>1785 /product="18S ribosomal RNA" BASE COUNT 448 a 381 c 487 g 469 t BASE COUNT 448 a 381 c 487 g 469 t 1488 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCCCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCCCG(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGAAGG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCAAG-|CU GGAAUAGGGU A|UAUUAA-A GUUG---UGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGCGU|G GAGCCUGCG| GCCUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aggaaggauu gac-aga(uu -gauag-c)u 2161 cuuucuugau ucuguggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGG- 2281 (UUGC)-CUU GUCAGG(UUG AUU)CCGGUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUG-ac --|gauug-c u----(uugg ---------- 2401 ---------- ---------- -----)---c aguu-g-gc| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ---cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UUG-GC(--- ---------- ----GUCUA- 2641 )GCCAAUGGA AGUAUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGG-C 2701 CGCACGCGCG GCUA-CACUG AUACGU---- ---------- ----(----) [uc-aaca-- 2761 ---------- -|-------- ---------- ---------- ---------- |aguuccu-a 2821 ggcc(---ga a-)ggucc-g gguaauc-uu ugaaa]---- ---------- ------ccgu 2881 auc-gUGAUG GGGAUAGAAC AU(UGCAAUU A)UUGU-UCU UCAACGAGGA AUGCCUAGUA 2941 AGCGU-GAG( UCAUCAU)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGUGCCggug aag-aguucg gau-uggag- uc-u-ugg-c 3061 u-agg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cc-ua -gcc----cu ga-uu----- ccg-agaa|g uucuuuaaac 3181 ccucccguuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.leucos 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra leucosticta clone 9. ACCESSION No information KEYWORDS No information. SOURCE Porphyra leucosticta clone 9. ORGANISM Porphyra leucosticta clone 9. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26199 LOCUS PTEFRB 1835 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra leucosticta DNA fragment. ACCESSION L26199 NID g507793 KEYWORDS PCR amplified. SOURCE Porphyra leucosticta DNA. ORGANISM Porphyra leucosticta Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1835) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1835 /organism="Porphyra leucosticta" /db_xref="taxon:35146" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1809..1835 /standard_name="PCR primer" /note="putative" BASE COUNT 462 a 395 c 498 g 480 t BASE COUNT 462 a 395 c 498 g 480 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- ucu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.miniat 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra miniata. ACCESSION No information KEYWORDS No information. SOURCE Porphyra miniata. ORGANISM Porphyra miniata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26200 LOCUS PTEFRC 1836 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra miniata DNA fragment. ACCESSION L26200 NID g507794 KEYWORDS PCR amplified. SOURCE Porphyra miniata DNA. ORGANISM Porphyra miniata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1836) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1836 /organism="Porphyra miniata" /db_xref="taxon:35147" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1810..1836 /standard_name="PCR primer" /note="putative" BASE COUNT 457 a 381 c 506 g 492 t BASE COUNT 457 a 381 c 506 g 492 t 1437 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guaa-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugggaa<-- --cuuu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cgcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 GU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-GUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 aauuga---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-agg(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUGUGGA GGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggcuu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgugg- cg-u-cug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ug-cc----- aug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.onoi 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra onoi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra onoi. ORGANISM Porphyra onoi. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015794 LOCUS AB015794 2331 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra onoi gene for small subunit rRNA, partial sequence. ACCESSION AB015794 NID g3986216 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra onoi DNA. ORGANISM Porphyra onoi Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2331) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2331 /organism="Porphyra onoi" /db_xref="taxon:78445" rRNA join(<1..554,1112..>2331) /product="small subunit rRNA" primer_bind 1..22 intron 555..1111 /note="intron-like structure" primer_bind 2312..2331 BASE COUNT 598 a 519 c 642 g 572 t BASE COUNT 453 a 386 c 476 g 469 t 1489 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CUAACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|C UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACCAACGACA CCUCCU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-ACGU-gc --|gcgca-u g----(ccau ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGUCCCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauu-aau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.pselin.1 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra pseudolinearis. subsp. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015793 LOCUS AB015793 1788 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, partial sequence. ACCESSION AB015793 NID g3986215 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra pseudolinealis DNA. ORGANISM Porphyra pseudolinearis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1788) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1788 /organism="Porphyra pseudolinearis" /db_xref="taxon:81939" primer_bind 1..22 rRNA <1..>1788 /product="small subunit rRNA" primer_bind 1769..1788 BASE COUNT 447 a 381 c 490 g 470 t BASE COUNT 447 a 381 c 490 g 470 t 1485 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAG------- -------UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuc uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cgu-ua- c-u>ACUUGG -AUAUCCGUA G(U-AAUC)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gucucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( AUA-UGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GU AAGGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGGGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaca---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaugaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u gc---(uuu- ---------- 2401 ---------- ---------- -----)--gc acug-u-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUACGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUC---- ---------- ----(----) [uc-aacgag 2761 -uuucaccug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gggc 2881 auc-gUGAUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AG-( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- gu-g-aag-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----gg aa-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.pseli.TT 3273 bp RNA RNA 10-JUL-1998 DEFINITION Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013185 LOCUS AB013185 2983 bp DNA PLN 10-JUL-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, isolate Tohaku Tottori. ACCESSION AB013185 NID g3298496 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra pseudolinealis gametophyte thallus DNA. ORGANISM Porphyra pseudolinealis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2983 /organism="Porphyra pseudolinealis" /note="collection_site: Tohaku Tottori" /db_xref="taxon:76162" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2983 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1135 /note="putative" exon 1136..2372 /note="putative" /product="SSU rRNA" intron 2373..2953 /note="group I intron; putative" exon 2954..2983 /note="putative" /product="SSU rRNA" BASE COUNT 754 a 658 c 835 g 736 t BASE COUNT 457 a 389 c 503 g 486 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuc uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cgu-ua- c-u>ACUUGG -AUAUCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gucucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( AUAUGGG)-U CU-ACCAU|G G-UAU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGUGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUG -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuaca---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaugaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u gc---(uuu- ---------- 2401 ---------- ---------- -----)--gc acug-u-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUACGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUC---- ---------- ----(----) [uc-aacgag 2761 -uuucaccug a|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gggc 2881 auc-gUGAUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAC)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- gu-g-aag-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----gg aa-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.pselin.2 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra pseudolinearis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS Hong,Y.K. TITLE pseudolinearis Nucleotide sequence of the 18s rDNA from Porphyra JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF116913 LOCUS AF116913 1799 bp DNA PLN 29-APR-1999 DEFINITION Porphyra pseudolinearis 18S ribosomal RNA gene, partial sequence. ACCESSION AF116913 NID g4704699 VERSION AF116913.1 GI:4704699 KEYWORDS . SOURCE Porphyra pseudolinearis. ORGANISM Porphyra pseudolinearis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Nucleotide sequence of the 18s rDNA from Porphyra pseudolinearis JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (29-DEC-1998) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1799 /organism="Porphyra pseudolinearis" /strain="pk-48" /db_xref="taxon:81939" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 449 a 378 c 496 g 476 t BASE COUNT 449 a 378 c 496 g 476 t 1474 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugagaa<-- ---cac-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|-CUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U--CG|GAGA GGGAGCC(UG AG-AAAC)GG -UACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 -ACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)UCU|U -AUCGA-GU- AUC>CAUUGG AG|GGCAAGG UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCG- A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--CC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuuaa---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG(ACGGA AGGGCACCAC -CAGGAGU|G GAGCGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau cuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g-----cua- ---------- 2401 ---------- ---------- -----)--gc acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |caguccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCC-UU|UGU -CACACCGCC 3001 UG-CGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-ugcgg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----c gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGG-U- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yez.OM 3273 bp RNA RNA 17-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013178 LOCUS AB013178 2858 bp DNA PLN 17-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Ogatsu Miyagi. ACCESSION AB013178 NID g3298489 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2858 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2858 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2319 /note="putative" /product="SSU rRNA" intron 2320..2828 /note="group I intron; putative" exon 2829..2858 /note="putative" /product="SSU rRNA" BASE COUNT 729 a 638 c 812 g 679 t BASE COUNT 460 a 392 c 497 g 483 t 1441 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.BRU107.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136429 LOCUS AF136429 476 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate BRU107 18S ribosomal RNA gene, partial sequence. ACCESSION AF136429 NID g5532397 VERSION AF136429.1 GI:5532397 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 476) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 476) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..476 /organism="Porphyra sp." /isolate="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>476 /product="18S ribosomal RNA" BASE COUNT 108 a 115 c 127 g 126 t BASE COUNT 108 a 115 c 127 g 126 t 2797 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~~~~|~ ~~~~~|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuag u|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaccuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- ca-c-ccg-u 3061 g-agggac-- ---------- ---------- --(auuc--- -)-------- ---------- 3121 ---------- --guccu-ga -acg----uu ug-uc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.GRB108.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136430 LOCUS AF136430 480 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate GRB108 18S ribosomal RNA gene, partial sequence. ACCESSION AF136430 NID g5532398 VERSION AF136430.1 GI:5532398 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 480) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 480) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..480 /organism="Porphyra sp." /isolate="GRB108" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>480 /product="18S ribosomal RNA" BASE COUNT 108 a 105 c 125 g 139 t 3 others BASE COUNT 108 a 105 c 125 g 139 t 2796 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgua-u y----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ua-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuu- -|-------- ---------- ---------- ---------- |uuguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-uaugg- cg-u-gag-u 3061 g-augg---- ---------- ---------- --(aumuc-- -)-------- ---------- 3121 ---------- ----cca-ug -aca----gc ug-cc----- aug-maaa|g uucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD018.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136434 LOCUS AF136434 485 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate LGD018 18S ribosomal RNA gene, partial sequence. ACCESSION AF136434 NID g5532402 VERSION AF136434.1 GI:5532402 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..485 /organism="Porphyra sp." /isolate="LGD018" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>485 /product="18S ribosomal RNA" BASE COUNT 108 a 110 c 130 g 137 t BASE COUNT 108 a 110 c 130 g 137 t 2788 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(auuu--- -)-------- ---------- 3121 ---------- --gcucu-ga -agg----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaccauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD030.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136432 LOCUS AF136432 495 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate LGD030 18S ribosomal RNA gene, partial sequence. ACCESSION AF136432 NID g5532400 VERSION AF136432.1 GI:5532400 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 495) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 495) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..495 /organism="Porphyra sp." /isolate="LGD030" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>495 /product="18S ribosomal RNA" BASE COUNT 115 a 113 c 129 g 138 t BASE COUNT 115 a 113 c 129 g 138 t 2778 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~~UA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u u----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacau- -|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugcucg gau-ugugg- cu-u-gcg-u 3061 g-augg---- ---------- ---------- --(aucuc-- -)-------- ---------- 3121 ---------- ----cca-ua -acg----ua cg-cc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.PAP052.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136435 LOCUS AF136435 512 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate PAP052 18S ribosomal RNA gene, partial sequence. ACCESSION AF136435 NID g5532403 VERSION AF136435.1 GI:5532403 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 512) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 512) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..512 /organism="Porphyra sp." /isolate="PAP052" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>512 /product="18S ribosomal RNA" BASE COUNT 123 a 116 c 133 g 140 t BASE COUNT 123 a 116 c 133 g 140 t 2761 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGA-ga --|augua-u g----(cuug cacuuucucg 2401 agccgcgaga acuucgcaag -----)---- acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacaaa u|-------- ---------- ---------- ---------- |acguccu-g 2821 gguu(--gga a-)uccuc-g gguaaucuuu ugaau]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAACAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGAUCCgaug aaa-uggaug gau-ccgag- uugg-guguu 3061 c-cugg---- ---------- ---------- --(cagg--- -)-------- ---------- 3121 ---------- ----cca-ga -gca----ca cg-cg----- acg-aaaa|g uucaguaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.RAK049.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136425 LOCUS AF136425 2835 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate RAK049 18S ribosomal RNA gene, partial sequence. ACCESSION AF136425 NID g5579324 VERSION AF136425.1 GI:5579324 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2835 /organism="Porphyra sp." /isolate="RAK049" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA join(<1..546,1088..>2229) /product="18S ribosomal RNA" intron 547..1087 /note="putative group I" intron 2230..>2835 /note="putative group I" BASE COUNT 725 a 639 c 813 g 658 t BASE COUNT 449 a 383 c 487 g 465 t 1489 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- --caa--ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GGA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuu)AGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGUGG( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 aauaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.RAK049.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136437 LOCUS AF136437 482 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate RAK049 18S ribosomal RNA gene, partial sequence. ACCESSION AF136437 NID g5532405 VERSION AF136437.1 GI:5532405 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 482) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 482) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..482 /organism="Porphyra sp." /isolate="RAK049" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>482 /product="18S ribosomal RNA" BASE COUNT 106 a 113 c 131 g 132 t BASE COUNT 106 a 113 c 131 g 132 t 2791 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.ROS054.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136438 LOCUS AF136438 485 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate ROS054 18S ribosomal RNA gene, partial sequence. ACCESSION AF136438 NID g5532406 VERSION AF136438.1 GI:5532406 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 485) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..485 /organism="Porphyra sp." /isolate="ROS054" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>485 /product="18S ribosomal RNA" BASE COUNT 108 a 110 c 129 g 138 t BASE COUNT 108 a 110 c 129 g 138 t 2788 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(aucc--- -)-------- ---------- 3121 ---------- --gcucu-ga -uug----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR053.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136439 LOCUS AF136439 483 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate SSR053 18S ribosomal RNA gene, partial sequence. ACCESSION AF136439 NID g5532407 VERSION AF136439.1 GI:5532407 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..483 /organism="Porphyra sp." /isolate="SSR053" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>483 /product="18S ribosomal RNA" BASE COUNT 106 a 109 c 133 g 135 t BASE COUNT 106 a 109 c 133 g 135 t 2790 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR091.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136440 LOCUS AF136440 483 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate SSR091 18S ribosomal RNA gene, partial sequence. ACCESSION AF136440 NID g5532408 VERSION AF136440.1 GI:5532408 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..483 /organism="Porphyra sp." /isolate="SSR091" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>483 /product="18S ribosomal RNA" BASE COUNT 111 a 115 c 126 g 131 t BASE COUNT 111 a 115 c 126 g 131 t 2790 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacaag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- cc-c-uca-c 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----uu ug-cc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.GRB146 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136431 LOCUS AF136431 470 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate GRB146 18S ribosomal RNA gene, partial sequence. ACCESSION AF136431 NID g5532399 VERSION AF136431.1 GI:5532399 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 470) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 470) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..470 /organism="Porphyra sp." /isolate="GRB146" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>470 /product="18S ribosomal RNA" BASE COUNT 106 a 106 c 121 g 137 t BASE COUNT 106 a 106 c 121 g 137 t 2803 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgua-u c----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ua-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuu- -|-------- ---------- ---------- ---------- |uuguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-uaugg- cg-u-gag-u 3061 g-augg---- ---------- ---------- --(auauc-- -)-------- ---------- 3121 ---------- ----cca-ug -aca----gc ug-cc----- aug-aaaa|g uucauuaaau 3181 cuuaucau~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD161 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136433 LOCUS AF136433 484 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra sp. isolate LGD161 18S ribosomal RNA gene, partial sequence. ACCESSION AF136433 NID g5532401 VERSION AF136433.1 GI:5532401 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 484) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 484) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..484 /organism="Porphyra sp." /isolate="LGD161" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>484 /product="18S ribosomal RNA" BASE COUNT 110 a 109 c 129 g 136 t BASE COUNT 110 a 109 c 129 g 136 t 2789 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(aauu--- -)-------- ---------- 3121 ---------- --gcucu-ga -agg----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaccauuu agAGGAA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.lill.2 3273 bp RNA RNA 20-JUL-1999 DEFINITION Porphyra lilliputiana.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136436 LOCUS AF136436 483 bp DNA PLN 20-JUL-1999 DEFINITION Porphyra lilliputiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF136436 NID g5532404 VERSION AF136436.1 GI:5532404 KEYWORDS . SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 483) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (22-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..483 /organism="Porphyra lilliputiana" /db_xref="taxon:99748" /dev_stage="gametophyte" /country="New Zealand" rRNA <1..>483 /product="18S ribosomal RNA" BASE COUNT 109 a 114 c 130 g 130 t BASE COUNT 109 a 114 c 130 g 130 t 2790 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (~~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~UUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sp.SHH 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017077 LOCUS AB017077 1631 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra sp. DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017077 NID g3510353 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra sp. gametophyte individual thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1631) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1631 /organism="Porphyra sp." /note="collection_site: Shinori Hakodate Hokkaido" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,1186..1215) /note="putative" /product="small subunit ribosomal RNA" intron 219..1185 /note="group I intron; putative" misc_feature 1216..1575 /note="ITS1; putative" rRNA 1576..>1631 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 400 a 404 c 440 g 387 t BASE COUNT 61 a 59 c 64 g 64 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcug- cu-a-uug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.B 3273 bp RNA RNA 16-JUL-1994 DEFINITION Porphyra spiralis B. str. PSA-B/Ubatuba, variety amplifolia. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis B. str. PSA-B/Ubatuba, variety amplifolia. ORGANISM Porphyra spiralis B. REFERENCE 1 (bases 1 to 3004) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE rRNA genes of the marine red alga Porphyra spiralis var. amplifolia Variant forms of a group I intron in nuclear small-subunit JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26175 LOCUS PTEPSAB 821 bp DNA PLN 16-JUL-1994 DEFINITION Porphyra spiralis var. amplifolia DNA sequence with partial cds. ACCESSION L26175 NID g438855 KEYWORDS . SOURCE Porphyra spiralis (strain PSA-B/Ubatuba, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 821) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) MEDLINE 94224117 FEATURES Location/Qualifiers source 1..821 /organism="Porphyra spiralis" /strain="PSA-B/Ubatuba" /variety="amplifolia" /db_xref="taxon:31350" CDS join(1..47,791..821) /partial /codon_start=1 /label=ORF /db_xref="PID:g438856" /translation="IIKSYHLEEGEVVTRFSVGEPAEGSS" exon 1..47 intron 48..790 /evidence=experimental /label=Group_I_intron exon 791..821 BASE COUNT 218 a 189 c 237 g 177 t BASE COUNT 27 a 12 c 19 g 20 t 3195 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ aucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUUU CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.D 3273 bp RNA RNA 16-JUL-1994 DEFINITION Porphyra spiralis D.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis D. ORGANISM Porphyra spiralis D. REFERENCE 1 (bases 1 to 3004) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26176 DEFINITION Porphyra spiralis var. amplifolia DNA sequence. DEFINITION Porphyra spiralis var. amplifolia DNA sequence. ACCESSION L26176 NID g438857 KEYWORDS . SOURCE Porphyra spiralis (individual_isolate PSA-D/Sao Sebastiao, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 985) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) MEDLINE 94224117 FEATURES Location/Qualifiers source 1..985 /organism="Porphyra spiralis" /isolate="PSA-D/Sao Sebastiao" /variety="amplifolia" /db_xref="taxon:31350" exon 1..46 intron 47..954 /evidence=experimental /label=Group_I_intron exon 955..985 BASE COUNT 253 a 225 c 285 g 222 t BASE COUNT 27 a 12 c 19 g 19 t 3196 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ 1381 ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ aucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.K4 3273 bp RNA RNA 17-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yashida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029881 LOCUS AB029881 3994 bp DNA PLN 17-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Kawaura-4. ACCESSION AB029881 NID g5525093 VERSION AB029881.1 GI:5525093 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; partial; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Kawaura-4, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcrib ed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Kawaura-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1007 a 915 c 1107 g 965 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.K5 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029882 LOCUS AB029882 3355 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Kawaura-5. ACCESSION AB029882 NID g5509936 VERSION AB029882.1 GI:5509936 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRAN; partial; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Kawaura-5, isolate:Kawaura Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3355) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3355) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3355 /organism="Porphyra tenera" /isolate="Kawaura Kumamoto" /strain="Kawaura-5" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,903..2138,2922..2951) /product="18S rRNA" intron 569..902 /note="putative" exon 903..2138 /note="putative" /product="ssu rRNA" intron 2139..2921 /note="group I intron;putative" exon 2922..2951 /note="putative" /product="ssu rRNA" misc_RNA 2952..3309 /note="ITS 1; putative" rRNA 3310..3355 /note="putative" /product="5.8S rRNA" BASE COUNT 845 a 756 c 929 g 824 t 1 others BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.KK 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013176 LOCUS AB013176 3589 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Kawaura Kumamoto. ACCESSION AB013176 NID g3298487 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3589 /organism="Porphyra tenera" /note="collection_site: Kawaura Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3589 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3559 /note="group I intron; putative" exon 3560..3589 /note="putative" /product="SSU rRNA" BASE COUNT 906 a 808 c 1019 g 856 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.M3 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029883 LOCUS AB029883 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-3. ACCESSION AB029883 NID g5509937 VERSION AB029883.1 GI:5509937 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-3, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.M4 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029884 LOCUS AB029884 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-4. ACCESSION AB029884 NID g5509938 VERSION AB029884.1 GI:5509938 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-4, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.SK 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013175 LOCUS AB013175 3766 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Shinwa Kumamoto. ACCESSION AB013175 NID g3298480 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3766 /organism="Porphyra tenera" /note="collection_site: Shinwa Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3766 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3736 /note="group I intron; putative" exon 3737..3766 /note="putative" /product="SSU rRNA" BASE COUNT 942 a 858 c 1067 g 899 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.S2 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029879 LOCUS AB029879 4168 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-2. ACCESSION AB029879 NID g5509934 VERSION AB029879.1 GI:5509934 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-2, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..4168 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-2" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3736..3765) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3735 /note="group I intron;putative" exon 3736..3765 /note="putative" /product="ssu rRNA" misc_RNA 3766..4122 /note="ITS 1; putative" rRNA 4123..>4168 /note="putative" /product="5.8S rRNA" BASE COUNT 1039 a 965 c 1157 g 1007 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.S3 3273 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB029880 LOCUS AB029880 3994 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-3. ACCESSION AB029880 NID g5509935 VERSION AB029880.1 GI:5509935 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-3, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1006 a 916 c 1107 g 965 t BASE COUNT 461 a 392 c 497 g 484 t 1439 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.T1 3273 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera strain T-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain T-1. ORGANISM Porphyra tenera strain T-1. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D86237 LOCUS D86237 2339 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86237 NID g1881402 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T-1) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2339) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2339 /organism="Porphyra tenera" /strain="T-1" rRNA 1..2339 /product="18S rRNA" BASE COUNT 601 a 518 c 649 g 571 t BASE COUNT 459 a 389 c 492 g 483 t 1450 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUUGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-- 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.te.TU3 3273 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera strain TU-3.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain TU-3. ORGANISM Porphyra tenera strain TU-3. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL :0543-34-9834) Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D86236 LOCUS D86236 2340 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86236 NID g1881401 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:TU-3) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2340) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2340 /organism="Porphyra tenera" /strain="TU-3" rRNA 1..2340 /product="18S rRNA" BASE COUNT 601 a 521 c 649 g 569 t BASE COUNT 460 a 393 c 491 g 479 t 1450 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)AC|AUCUU CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -AAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.T8 3273 bp RNA RNA 13-FEB-1997 DEFINITION Porphyra tenera strain T8.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain T8. ORGANISM Porphyra tenera strain T8. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB000964 LOCUS AB000964 2302 bp DNA PLN 13-FEB-1997 DEFINITION Red algae 18S rRNA gene, partial sequence. ACCESSION AB000964 NID g1841309 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T8) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2302) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA sequence JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2302 /organism="Porphyra tenera" /strain="T8" rRNA 1..2302 /partial /standard_name="18S rRNA gene" misc_feature 551..1061 /note="intron-like structure" BASE COUNT 587 a 505 c 644 g 566 t BASE COUNT 452 a 381 c 484 g 476 t 1480 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~CAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGUGC-AGG( UCAUCAA)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu guAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUA~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.tenuip 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra tenuipedalis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenuipedalis. ORGANISM Porphyra tenuipedalis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015797 LOCUS AB015797 2299 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra tenuipedalis gene for small subunit rRNA, partial sequence. ACCESSION AB015797 NID g3986219 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra tenuipedalis DNA. ORGANISM Porphyra tenuipedalis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2299) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2299 /organism="Porphyra tenuipedalis" /db_xref="taxon:78446" rRNA join(<1..555,1066..>2299) /product="small subunit rRNA" primer_bind 1..22 intron 556..1065 /note="intron-like structure" primer_bind 2280..2299 BASE COUNT 586 a 509 c 644 g 560 t BASE COUNT 453 a 382 c 484 g 470 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAG------- -------UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugagaa<-- ---cac-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 G-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- gaca--(-cu 1921 auuuga---- -------)-- -ugacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGGGAAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 aguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-cgcgg- cu-g-cug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezoen 3273 bp RNA RNA 19-DEC-1995 DEFINITION Porphyra yezoensis.; . ACCESSION D79976 KEYWORDS . SOURCE Porphyra yezoensis. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Kitade,Y., Maruyama,T. and Saga,N. TITLE Rhodophyta) based on the 18S rDNA Phylogenetic position of Porphyra yezoensis (Bangiales, JOURNAL J. Mar. Biotechnol. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D79976 Submitted (12-Dec-1995) to DDBJ by: Naotsune Saga Dept. of Marine Science Tokai University Orido 3-20-1 Shimizu, Shizuoka 424 Japan Phone: 0543-34-0411 E-mail: nsaga@simizugw.cc.u-tokai.ac.jp Fax: 0543-34-9834. NCBI gi: 1125635 BASE COUNT 458 a 395 c 491 g 479 t 1450 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUC CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(CCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yez.HH 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013177 LOCUS AB013177 2349 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Hakodate Hokkaido. ACCESSION AB013177 NID g3298488 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2349 /organism="Porphyra yezoensis" /note="collection_site: Hakodate Hokkaido" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 precursor_RNA <1..>2349 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2349 /note="putative" /product="SSU rRNA" BASE COUNT 601 a 521 c 655 g 572 t BASE COUNT 460 a 392 c 497 g 483 t 1441 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---caa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 uuuaua---- -------)-- -ugacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggcuc-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ampl.3 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra amplissima.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra amplissima. ORGANISM Porphyra amplissima. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015791 LOCUS AB015791 1785 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra amplissima gene for small subunit rRNA, partial sequence. ACCESSION AB015791 NID g3986213 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra amplissima DNA. ORGANISM Porphyra amplissima Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1785) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1785 /organism="Porphyra amplissima" /db_xref="taxon:36332" primer_bind 1..22 rRNA <1..>1785 /product="small subunit rRNA" primer_bind 1766..1785 BASE COUNT 449 a 378 c 488 g 470 t BASE COUNT 449 a 378 c 488 g 470 t 1488 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu uu-------- 121 ---auac-uc guaa-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugggga<-- --cuuu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cgcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGAC-- 661 -|----U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CACAGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-cu 1921 auuuga---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGu-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUGUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuacacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)gguacug gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaua aaa-uguccg gau-ugugg- cg-c-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----ga ug-cc----- gcg-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.varieg 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra variegata.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra variegata. ORGANISM Porphyra variegata. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015792 LOCUS AB015792 1789 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra variegata gene for small subunit rRNA, partial sequence. ACCESSION AB015792 NID g3986214 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra variegata DNA. ORGANISM Porphyra variegata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1789) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1789 /organism="Porphyra variegata" /db_xref="taxon:78444" primer_bind 1..22 rRNA <1..>1789 /product="small subunit rRNA" primer_bind 1770..1789 BASE COUNT 450 a 377 c 492 g 470 t BASE COUNT 450 a 377 c 492 g 470 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu uu-------- 121 ---auac-uc guaa-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-cguuccu uugggga<-- --cuuu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---cgcucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCC -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-ggga- uuggcgg-g- ggca--(-cu 1921 auuuga---- -------)-- -ugaccacgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUGUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuacacuug a|-------- ---------- ---------- ---------- |uaguccu-g 2821 gacc(--gga a-)ggucu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaua aaa-uguccg gau-ugugg- cg-c-cug-u 3061 g-augga--- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----ga ug-cc----- gcg-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.subo.2 3273 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra suborbiculata.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB015796 LOCUS AB015796 2279 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, partial sequence. ACCESSION AB015796 NID g3986218 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra suborbiculata DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2279) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2279 /organism="Porphyra suborbiculata" /db_xref="taxon:76158" rRNA join(<1..555,1046..>2279) /product="small subunit rRNA" primer_bind 1..22 intron 556..1045 /note="intron-like structure" primer_bind 2260..2279 BASE COUNT 582 a 494 c 643 g 560 t BASE COUNT 452 a 378 c 488 g 471 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA---- ---------- AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |c-gcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAA~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.caroli 3273 bp RNA RNA 25-APR-1999 DEFINITION Porphyra carolinensis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra carolinensis. ORGANISM Porphyra carolinensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Klein,A.S., Taylor,H.A., West,A.L., Wallace,A.L., Teasdale,B., Cain,D.F., Neefus,C.D., Yarish,C. and Mathieson,A.C. TITLE Porphyra of coastal New England Sequence variation in plastid-encoded rbcL and nuclear small subunit RNA genes applied to species identification for JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF133792 LOCUS AF133792 1547 bp DNA PLN 25-APR-1999 DEFINITION Porphyra carolinensis 18S ribosomal RNA, partial sequence. ACCESSION AF133792 NID g4680366 VERSION AF133792.1 GI:4680366 KEYWORDS . SOURCE Porphyra carolinensis. ORGANISM Porphyra carolinensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1547) AUTHORS Klein,A.S., Taylor,H.A., West,A.L., Wallace,A.L., Teasdale,B., Cain,D.F., Neefus,C.D., Yarish,C. and Mathieson,A.C. TITLE Sequence variation in plastid-encoded rbcL and nuclear small subunit RNA genes applied to species identification for Porphyra of coastal New England JOURNAL Unpublished REFERENCE 2 (bases 1 to 1547) AUTHORS Wallace,A.L. TITLE Direct Submission JOURNAL Submitted (09-MAR-1999) Biochemistry and Molecular Biology, University of New Hampshire, Rudman Hall, Durham, NH 03824, USA FEATURES Location/Qualifiers source 1..1547 /organism="Porphyra carolinensis" /db_xref="taxon:31348" rRNA <1..>1547 /product="18S ribosomal RNA" BASE COUNT 369 a 439 c 334 g 405 t BASE COUNT 272 a 217 c 285 g 281 t 2218 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~G 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-C-GC-ACU ACUGC(-GAA A)GC|AUCUG CC-AU|GGAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU --CGAAGAC- G(A-UCAG-A -U-AC)CGUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|--GGGA Uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaG~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~(-~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~]~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~~| ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)-~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~))~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Porphy.sp. 3273 bp RNA RNA 29-APR-1999 DEFINITION Porphyra sp. str. pk-723. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. str. pk-723. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Hong,Y.K. TITLE Nucletide sequence of the 18s rDNA from Porphyra sp JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117306 LOCUS AF117306 1799 bp DNA PLN 29-APR-1999 DEFINITION Porphyra sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF117306 NID g4704701 VERSION AF117306.1 GI:4704701 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Nucletide sequence of the 18s rDNA from Porphyra sp JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Hong,Y.K. TITLE Direct Submission JOURNAL Submitted (30-DEC-1998) Biotechnology and Bioengineering, Pukyong National University, Pusan 608-737, Korea FEATURES Location/Qualifiers source 1..1799 /organism="Porphyra sp." /strain="pk-723" /db_xref="taxon:2790" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 451 a 376 c 492 g 480 t BASE COUNT 451 a 376 c 492 g 480 t 1474 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uu-)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UCUUGGU-G( CCAGCAGCC- 1021 |GCGGUUA)U UCCA-G-|CU CCAAUAG-GU A|UAUUAA-A GUUG--UUGC AG|UUA-AAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G--AA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-auggu--- ---------- ---------- --(uuca--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.lill.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra lilliputiana.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana. REFERENCE 1 (bases 1 to 2340) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136424 LOCUS AF136424 2804 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra lilliputiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF136424 NID g5579323 VERSION AF136424.1 GI:5579323 KEYWORDS . SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2804 /organism="Porphyra lilliputiana" /db_xref="taxon:99748" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 47E" rRNA join(<1..546,1039..>2277) /product="18S ribosomal RNA" intron 547..1038 /note="putative group I" intron 2278..2804 /note="putative group I" BASE COUNT 720 a 613 c 790 g 668 t 13 others BASE COUNT 450 a 372 c 488 g 473 t 1490 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaaguacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGNUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- --cuu--ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAA-UCGUA ACAGGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sub.KY 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013180 LOCUS AB013180 2329 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013180 NID g3298491 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra suborbiculata gametophyte DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2329 /organism="Porphyra suborbiculata" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76158" /dev_stage="gametophyte" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2329 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1062 /note="putative" exon 1063..2329 /note="putative" /product="SSU rRNA" BASE COUNT 593 a 505 c 658 g 573 t BASE COUNT 461 a 387 c 501 g 486 t 1438 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacuacu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugggaa<-- ---cuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ugcccau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- acu)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGCCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CU ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGga- uuggcgg-g- ggca--(-au 1921 auuuua---- -------)-- -ugacuucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(ccag ---------- 2401 ---------- ---------- -----)---a acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCUU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |cagcccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuuu ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-g-gug-u 3061 g-augg---- ---------- ---------- --(uuucau- -)-------- ---------- 3121 ---------- ----cca-ga -acg----cu ag-cg----- gug-agaa|g cucauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.GRB108.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136420 LOCUS AF136420 2845 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate GRB108 18S ribosomal RNA gene, partial sequence. ACCESSION AF136420 NID g5579319 VERSION AF136420.1 GI:5579319 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2845 /organism="Porphyra sp." /isolate="GRB108" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Otago 45 08S, 171 58E" rRNA join(<1..549,1109..>2336) /product="18S ribosomal RNA" intron 550..1108 /note="putative group I" intron 2337..>2845 /note="putative group I" BASE COUNT 740 a 616 c 796 g 692 t 1 others BASE COUNT 462 a 356 c 470 g 480 t 1505 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaaau cu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggcga-g- ggau--(-ca 1921 guugaa---- -------)-- -ugaucucgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgua-u u----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ua-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuu- -|-------- ---------- ---------- ---------- |uuguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGSC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguucg gau-uaugg- cg-u-gag-u 3061 g-augg---- ---------- ---------- --(aucuc-- -)-------- ---------- 3121 ---------- ----cca-ug -aca----gc ug-cc----- aug-caaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD030.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136422 LOCUS AF136422 2382 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate LGD030 18S ribosomal RNA gene, partial sequence. ACCESSION AF136422 NID g5579321 VERSION AF136422.1 GI:5579321 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2382) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2382) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2382 /organism="Porphyra sp." /isolate="LGD030" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 48E" rRNA <1..>1777 /product="18S ribosomal RNA" intron 1778..2382 /note="putative group I" BASE COUNT 629 a 491 c 648 g 605 t 9 others BASE COUNT 460 a 358 c 472 g 476 t 1507 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~U|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCANGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaagu uu-------- 121 ---anac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguc 181 au-anuuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)G 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCNAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG NUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uuu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAU(U-UA 961 AAUC)UCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggcgg-g- gguu--(-ca 1921 guugaa---- -------)-- -ugaucccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u u----(uucg ---------- 2401 ---------- ---------- -----)---c acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| cu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacau- -|-------- ---------- ---------- ---------- |ucguccu-g 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-ugcucg gau-ugugg- cu-u-gcg-u 3061 g-augg---- ---------- ---------- --(aucuc-- -)-------- ---------- 3121 ---------- ----cca-ua -acg----ua cg-cc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.pur.Av 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra purpurea (Avonport, NS). ACCESSION No information KEYWORDS No information. SOURCE Porphyra purpurea (Avonport, NS). ORGANISM Porphyra purpurea (Avonport, NS). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26201 LOCUS PTEFRF 1839 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra purpurea DNA fragment. ACCESSION L26201 NID g507796 KEYWORDS PCR amplified. SOURCE Porphyra purpurea (strain Avonport) DNA. ORGANISM Porphyra purpurea Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1839) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1839 /organism="Porphyra purpurea" /strain="Avonport" /db_xref="taxon:2787" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1813..1839 /standard_name="PCR primer" /note="putative" BASE COUNT 465 a 384 c 498 g 492 t BASE COUNT 465 a 384 c 498 g 492 t 1434 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu cguuuucuuu 121 uuuguac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -ugccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGAUA-GG GG-GCCU(-- uuu)AGGUUU -U-CU-AAUC GGAAUGAGA| AGAAU(U-UA 961 AACC)UCU|C -ACCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCAUU| CGC-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGG-A-CU ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCUUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GAGA- Uuggcgg-g- gauu--(--u 1921 guugua---- -------)-- -ugaucccgu cagcauccu- -gcGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- gagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgua-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gc-aCUCUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAU-GC(--- ---------- ----GUCUA- 2641 )GUAUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 UGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -ucacacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguu(--uua u-)gaccu-g gguaaucuug ggaac]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGG-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-ugcuua gau-cuugg- gg-a-gcg-g 3061 c-cugga--- ---------- ---------- --(ggucaaa g)-------- ---------- 3121 ---------- ---ucca-gu -acg----ug aa-cc----- uug-aaaa|g aucauugaau 3181 cuuacccuuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS P.PAP052.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136423 LOCUS AF136423 1837 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate PAP052 18S ribosomal RNA gene, partial sequence. ACCESSION AF136423 NID g5579322 VERSION AF136423.1 GI:5579322 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1837) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1837) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1837 /organism="Porphyra sp." /isolate="PAP052" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Leigh, Northland 36 17S, 174 48E" rRNA <1..>1837 /product="18S ribosomal RNA" BASE COUNT 468 a 383 c 498 g 488 t BASE COUNT 468 a 383 c 498 g 488 t 1436 others ORIGIN 1 |~~~~~~~~~ ~~GGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaacc cu-------- 121 -cuauac-uu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacc<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- uaa)CGGCCC -U-CU-AAUU GGAAUGAGA| AAAAU(U-UA 961 AAUC)ACU|U -GUCGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GG|UAGU-C- 1681 GGGGGCAUU| CCU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|-UCUG -CAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggcgg-g- aga---(-uc 1921 ugguuu---- -------)-u -aggucccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GCAAC UUACCAGGUC [cgg-acag- aaugaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGA-ga --|augua-u g----(cuug cacuuucucg 2401 agccgcgaga acuucgcaag -----)---- acug-c-gu| --g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacaaa u|-------- ---------- ---------- ---------- |acguccu-g 2821 gguu(--gga a-)uccuc-g gguaaucuuu ugaau]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAACAG)CC UGCGU-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGAUCCgaug aaa-uggaug gau-ccgag- uugg-guguu 3061 c-cugg---- ---------- ---------- --(cagg--- -)-------- ---------- 3121 ---------- ----cca-ga -gca----ca cg-cg----- acg-aaaa|g uucaguaaau 3181 cuuaucauuu agAGGAAGGA GAA--UCGUU ACAAGGUUU- CCGUUGG(UG AA)CCUGCAG 3241 AAGGAU~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umb.NM 3273 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra umbilicalis. subsp. Porphyra umbilicalis isolate Nahant Mass.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis. subsp. Porphyra umbilicalis isolate Nahant Mass. ORGANISM Porphyra umbilicalis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB013179 LOCUS AB013179 1818 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra umbilicalis gene for small subunit rRNA, isolate Nahant Mass. ACCESSION AB013179 NID g3298490 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra umbilicalis gametophyte thallus DNA. ORGANISM Porphyra umbilicalis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1818) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 1818) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1818 /organism="Porphyra umbilicalis" /note="collection_site: Nahant Mass" /db_xref="taxon:2786" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>1818 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..1818 /note="putative" /product="SSU rRNA" BASE COUNT 469 a 369 c 485 g 495 t BASE COUNT 469 a 369 c 485 g 495 t 1455 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- auu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-g- gguuc-(--- 1921 --aguu---- -------)ga augauccugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCCgaug aaa-uguucg gau-ugugg- cg-u-gcg-u 3061 g-augga--- ---------- ---------- --(uau---- -)-------- ---------- 3121 ---------- ---ccca-ua -gcg----ug cg-uc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umb.We 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyra umbilicalis, isolate "Westport". ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis, isolate "Westport". ORGANISM Porphyra umbilicalis, isolate "Westport". REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L36049 LOCUS PTEWRRNA 1818 bp DNA PLN 31-AUG-1994 DEFINITION Porphyra umbilicalis small subunit ribosomal RNA (rDNA) gene. ACCESSION L36049 NID g533258 KEYWORDS PCR identification; ribosomal RNA; ribosomal RNA small subunit. SOURCE Porphyra umbilicalis (strain Westport (Nova Scotia)) DNA. ORGANISM Porphyra umbilicalis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1818) AUTHORS Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., Singh,R.K., Gutell,R.R. and Ragan,M.A. TITLE An investigation of order Bangiales (Bangiophycidae, Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1818 /organism="Porphyra umbilicalis" /strain="Westport (Nova Scotia)" /db_xref="taxon:2786" primer_bind complement(1..22) /note="putative" primer_bind 1793..1818 /note="putative" BASE COUNT 470 a 369 c 486 g 493 t BASE COUNT 470 a 369 c 486 g 493 t 1455 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAACcaguu 181 au-aguuucu uugaacg<-- -uaccu-ua- c-u>ACUUGG -GUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAGUGG)-U CU-ACCAU|G G-UGU-CAAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GG A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCU(-- auu)AGGUCC -U-CU-AAUU GGAAUGAGA| AGAAC(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- uuggcgg-a- gguuc-(--- 1921 --aguu---- -------)ga augauccugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-ACAAC UUACCAGGUC [cgg-acag- aauaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAC|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gu --|acgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-ac-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuucacuuu u|-------- ---------- ---------- ---------- |acguccu-u 2821 gguc(--gga a-)ggccc-g gguaaucuug ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGAUAGAUC AU(UGCAAUU U)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCCgaug aaa-uguucg gau-ugugg- cg-u-gcg-u 3061 g-augga--- ---------- ---------- --(uau---- -)-------- ---------- 3121 ---------- ---ccca-ua -gcg----ug cg-uc----- aug-aaaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 A-GGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS P.LGD018.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136421 LOCUS AF136421 2822 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate LGD018 18S ribosomal RNA gene, partial sequence. ACCESSION AF136421 NID g5579320 VERSION AF136421.1 GI:5579320 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2822) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2822) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2822 /organism="Porphyra sp." /isolate="LGD018" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 48E" rRNA <1..>1813 /product="18S ribosomal RNA" intron 1814..2822 /note="putative group I" BASE COUNT 718 a 617 c 778 g 703 t 6 others BASE COUNT 461 a 374 c 486 g 481 t 1471 others ORIGIN 1 |~~~~~~~A- CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacgu uu-------- 121 ---auac-aa guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccc uugagaa<-- --cuc--ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau cc-aa|guuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aua)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAGC)CGU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG UCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uugguag-g- gaau--(-cg 1921 uauaaa---- -------)-c -cgacucugc cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UA-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(NCAA)G GCU-G-AAA- -CUUAANGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acna- aaggaugauu gan-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cucg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(auuu--- -)-------- ---------- 3121 ---------- --gcucu-ga -agg----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaccauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.acanth 3273 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra acanthophora var. acanthophora. ACCESSION No information KEYWORDS No information. SOURCE Porphyra acanthophora var. acanthophora. ORGANISM Porphyra acanthophora var. acanthophora. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26197 LOCUS PTEFRA 1845 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra acanthophora DNA fragment. ACCESSION L26197 NID g507792 KEYWORDS PCR amplified. SOURCE Porphyra acanthophora (strain acanthophora) DNA. ORGANISM Porphyra acanthophora Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1845) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1845 /organism="Porphyra acanthophora" /strain="acanthophora" /db_xref="taxon:35145" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1819..1845 /standard_name="PCR primer" /note="putative" BASE COUNT 469 a 400 c 493 g 483 t BASE COUNT 469 a 400 c 493 g 483 t 1428 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgccu uu-------- 121 ---auac-uc guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccu uugggaa<-- ---ccc-ca- c-u>ACUUGG -AUAGCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-C CU-ACCAU|G G-UGU-CGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-u uua)CGGUCC -U-CU-AAUU GGAGUGAGA| ACAAU(U-UA 961 AAUU)CCU|U -AUCAA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGC-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggaaa-(--- 1921 --cacuu--- -------)uu augacuccgu cagcacccu- -auGG(-GAA A)CCA--AAG 1981 UU-cuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgua-u g----(cccg ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-ac-cUUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAAUAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacaag 2761 -ucgcacuug a|-------- ---------- ---------- ---------- |caguccu-g 2821 gacc(--gga a-)ggcuc-g gguaaccuuu ugaaa]---- ---------- ------cugc 2881 auc-guGAUG GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUUGUA 2941 GGCGU-AGG( UCACUAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aag-uguucg gau-ugcgg- cu-c-ggg-u 3061 g-ugauggac ---------- ---------- --(uua---- -)-------- ---------- 3121 ---------- --gucca-ga -gca----cu ag-cc----- guu-agaa|g uucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 GCACUGGC-- ---CGU~~~~ ~~~~~~~~|| ||| // LOCUS P.SSR091.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136428 LOCUS AF136428 1752 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate SSR091 18S ribosomal RNA gene, partial sequence. ACCESSION AF136428 NID g5579327 VERSION AF136428.1 GI:5579327 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1752) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1752) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1752 /organism="Porphyra sp." /isolate="SSR091" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Otago 45 57S, 170 20E" rRNA <1..>1752 /product="18S ribosomal RNA" BASE COUNT 446 a 378 c 471 g 457 t BASE COUNT 446 a 378 c 471 g 457 t 1521 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~UCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaccu uu-------- 121 ---auac-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguucca uugagaa<-- --cacu-uu- c-u>ACUUGG -AUAACCGUA G(G-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcgg-g- ggcu--(-cu 1921 auacaa---- -------)-- -cgacuccgu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acaa- aaguaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacaag 2761 -uuucacuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CAAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- cc-c-uca-c 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -acg----uu ug-cc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.BRU107.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp. str. BRU107. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. str. BRU107. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS .A. TITLE sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136418,AF136419 LOCUS PSBRU107G1 744 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 5' sequence. ACCESSION AF136418 NID g5579316 VERSION AF136418.1 GI:5579316 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..744 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" rRNA join(<1..575,AF136419.1:469..>1712) /product="18S ribosomal RNA" intron 576..>744 /note="putative group I" BASE COUNT 200 a 150 c 191 g 192 t 11 others -------------------------------------------------------------------------- LOCUS PSBRU107G2 2269 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 3' sequence. ACCESSION AF136419 NID g5579317 VERSION AF136419.1 GI:5579317 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2269 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" intron <1..468 /note="putative group I" intron 1713..>2269 /note="putative group I" rRNA join(AF136418.1:<1..575,469..>1712) /product="18S ribosomal RNA" BASE COUNT 547 a 513 c 660 g 536 t 13 others BASE COUNT 456 a 380 c 492 g 477 t 1468 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GG-UAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacgu uu-------- 121 ---auac-aa guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguucca uugagaa<-- --caa--ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GGA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- auu)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG CCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uuggcag-g- gguu--(-cu 1921 uuuuaa---- -------)-- -cgacucugu cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acag- aagaaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UGC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacgag 2761 -uuucacuag u|-------- ---------- ---------- ---------- |uaguccu-g 2821 gguc(--gga a-)ggccu-g gguaaccuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-caagg- ca-c-ccg-u 3061 g-agggac-- ---------- ---------- --(auuc--- -)-------- ---------- 3121 ---------- --guccu-ga -acg----uu ug-uc----- gug-gaaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGU~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.ROS054.1 3273 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF136426 LOCUS AF136426 1758 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate ROS054 18S ribosomal RNA gene, partial sequence. ACCESSION AF136426 NID g5579325 VERSION AF136426.1 GI:5579325 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1758) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 1758) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..1758 /organism="Porphyra sp." /isolate="ROS054" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA <1..>1758 /product="18S ribosomal RNA" BASE COUNT 447 a 370 c 475 g 466 t BASE COUNT 447 a 370 c 475 g 466 t 1515 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~UCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacgu uu-------- 121 ---auac-aa guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuccc uugagaa<-- -cucuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---uccucau cc-aa|guuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGA-( GUAUUGG)-U CU-ACCAU|G G-UGU-CGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GG GG-GCCC(-- uuu)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CGU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-UGG-AAG- A-CGU-A-CA ACUGC(-GAA A)GC|AUCUG UCAU|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CGAUGCCGAC |UG|-GGGA- Uugguag-g- gaau--(-cg 1921 uauaaa---- -------)-c -cgacucugc cagcacccu- -gaGG(-GAA A)CCA--AAG 1981 UA-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acaa- aaggaugauu gac-aga(cu -gaaag-c)u 2161 cuuucuugau uuuuuggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGU|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGU-gc --|gcgca-u g----(cuag ---------- 2401 ---------- ---------- -----)---u acug-c-gu| --u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-AC-CUUC 2581 UUAGAGG]-- -|-------- -----GACUA UAC-GC(--- ---------- ----GUCUA- 2641 )GCGUAUGGA AGAGUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAC---- ---------- ----(----) [uc-aacaag 2761 -uuucgcuug a|-------- ---------- ---------- ---------- |uagcccu-g 2821 uguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------gugc 2881 auc-gUGCUG GGGACAGAUC AU(UGCAAUU A)UUGA-UCU CGAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CU UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gac-cgugg- cu-c-uca-u 3061 g-augggc-- ---------- ---------- --(aucc--- -)-------- ---------- 3121 ---------- --gcucu-ga -uug----uu ug-uu----- gua-gaaa|g gacauuaaau 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.OG1 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis OG-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis OG-1. ORGANISM Porphyra yezoensis OG-1. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017078 LOCUS AB017078 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-1. ACCESSION AB017078 NID g3510354 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-1) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-1" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,744..773) /note="putative" /product="small subunit ribosomal RNA" intron 219..743 /note="group I intron; putative" misc_feature 774..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 289 a 292 c 318 g 276 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.OG4 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017081 LOCUS AB017081 1170 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-4. ACCESSION AB017081 NID g3510357 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1170) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1170 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,733..762) /note="putative" /product="small subunit ribosomal RNA" intron 219..732 /note="group I intron; putative" misc_feature 763..1115 /note="ITS1; putative" rRNA 1116..>1170 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 287 a 287 c 316 g 280 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.nara 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis narawaensis cv. F6-1. ORGANISM Porphyra yezoensis narawaensis cv. F6-1. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017083 LOCUS AB017083 1176 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1 DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017083 NID g3510359 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (cultivar:F6-1) gametophyte vegetative DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1176) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1176 /organism="Porphyra yezoensis" /cultivar="F6-1" /note="forma: narawaensis" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="vegetative" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1121 /note="ITS1; putative" rRNA 1122..>1176 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 291 a 294 c 313 g 278 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.NA2 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-2.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-2. ORGANISM Porphyra yezoensis NA-2. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017075 LOCUS AB017075 1174 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-2. ACCESSION AB017075 NID g3510351 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-2) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1174) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1174 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-2" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1119 /note="ITS1; putative" rRNA 1120..1174 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 278 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS P.yez.NA4 3273 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-4.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-4. ORGANISM Porphyra yezoensis NA-4. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017076 LOCUS AB017076 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-4. ACCESSION AB017076 NID g3510352 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 279 t BASE COUNT 60 a 60 c 66 g 62 t 3025 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~---~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~-| ~~~~~~~~|~ ~~~~~|~~~- 2281 (~~~~)-~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~((~~ ~)~~~~~~~~ 2521 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~AUU A)UUGA-UCU UCAACGAGGA AUUCCUUGUA 2941 GGCGC-AGG( UCAUCAG)CC UGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCgaug aaa-uguccg gau-cgcgg- cu-a-gug-u 3061 g-augga--- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---ucca-ga -gcg----gu ag-cc----- gug-agaa|g cucauuaaau 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UU~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Porphy 3273 bp RNA RNA 08-JAN-1999 DEFINITION Porphyridiales. ACCESSION No information KEYWORDS No information. SOURCE Porphyridiales. ORGANISM Porphyridiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS D.grisea 3273 bp RNA RNA 24-JAN-191 DEFINITION Dixonielloa grisea. ACCESSION No information KEYWORDS No information. SOURCE Dixonielloa grisea. ORGANISM Dixonielloa grisea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26187 DIXONIELLA GRISEA, red algae from M.Ragan LOCUS DIXFRA 1800 bp ds-DNA PLN 30-JUN-1994 DEFINITION Dixoniella grisea DNA fragment. ACCESSION L26187 KEYWORDS PCR amplified. SOURCE Dixonielloa grisea DNA. ORGANISM Dixonielloa grisea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Porphyridiales; Porphyridiaceae. REFERENCE 1 (bases 1 to 1800) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507230 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1763..1800 /standard_name="PCR primer" /note="putative" source 1..1800 /organism="Dixonielloa grisea" /sequenced_mol="DNA" BASE COUNT 500 a 315 c 496 g 489 t BASE COUNT 499 a 311 c 493 g 486 t 1484 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAG UCUUGUCUCA AA|GGUUAAG 61 CCAUGCAAUU GA-AAGU|-- -----|---- ---(----)[ uuaaguga-u uu-------- 121 --ucaac--u acga-a]--- --------|- --ACU|-GUG GACAGCUCAU UAAACcaguu 181 gu-uauuuau uugauag<-- --uaaa-ag- u-u>AAACGG AAUAUCCGCA G(U-AAUU)C 241 UGGGGUUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|auuu cugc|CCUAU 601 CAACUUUG-G AUUGUAGG-( GUAGUGG)-C CU-ACAAU|G G-UGA-UUAC |GGGUA-CGG 661 A|GGA-U(CA GG)GUCUGAU U-CCG|GAGA AGGCGCC(UU AA-AAAC)GG CGGCUACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGAUA-GU GU-GCUC(-- uuu)GAGUGU -A-CU-AAUU GGAAUGAGA| GAAAU(U-UA 961 AAUA)UGU|C -AACGA-UG- AAC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAGUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| CGU-AUUCCA -GAG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGG-AAG- A-CGA-A-CU GGUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUGCCCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGCG CAAA--GAC- G(A-UUAG-A -GAC)C-GUU 1861 GUAGU|CCUA -ACC-AUAAA CUAUGCCGAC |CG|-GGGA- Ucagguu-u- aaa---(--- 1921 -cguuaa--- -------)-- --gaugaacu uggcaccca- -agGA(-GAA A)UCG---AG 1981 UU-uucgGGC |-U|CUGGGG -GGAGUAU-G GUU(GCAA)A GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AAAACAUCAC -CGGGCGU|G GAUUUUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GG-CUUUA|G UUGGU|GGA- 2281 (AUAA)-UCU GUCUGC(UUA AUU)GCGUUA ACGAACGAGA CCUCGA|--- ---------- 2341 ----(----- )[CUUGCUAA CU-Aguc-ac --|ggaca-u u----(uuua u--------- 2401 ---------- ---------- -----)---g a-ug-uacc| --gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gu-gg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UUG-UC(--- ---------- ----GUUUA- 2641 )GACGAUGGA AGUGCGAGGC AAAGUCAGGU CAGUGA|UGC C|CU-UAGAU G-UUCUGGgC 2701 CGCACGCGUA -AUA-CACUG AUGCGG---- ---------- ----(----) [uc-aacgag 2761 -uga------ -|-------- ----(----- --)------- ---------- |augaccu-u 2821 gucc(--gag a-)ggaga-u ggaaaucuu- ugaaa]---- ---------- ------acgc 2881 auc-gUGCUG GGGAUCGACC AU(UGUAACU -)AUGG-UCG UGAACGAGGA AUGCCUUGUA 2941 AGCAU-GCU( UCAACAA)AG CGUGU-UGAA UAAGU-CCCU GUUUUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGA-UGAA UGUUGCggug aaa-uguuug gac-guggg- ga-a-ugu-u 3061 g-uugg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-aa -cag----gu uu-gc----- ugu-gaaa|a uucguugaac 3181 cuuagcauuu agAGGAAGGA GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA---- --------|| ||| // LOCUS Por.aerugi 3273 bp RNA RNA 24-JAN-191 DEFINITION Porphyridum aerugineum. ACCESSION No information KEYWORDS No information. SOURCE Porphyridum aerugineum. ORGANISM Porphyridum aerugineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L27635 LOCUS PPUDLRRNA 1773 bp ss-rRNA RNA 22-MAR-1994 DEFINITION Porphyridum aerugineum 16S-like ribosomal RNA (16S-like rRNA). ACCESSION L27635 KEYWORDS 16S-like rRNA; 16S-like ribosomal RNA. SOURCE Porphyridium aerugineum rRNA. ORGANISM Porphyridium aerugineum Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Porphyridiales; Porphyridiacea. REFERENCE 1 (bases 1 to 1773) AUTHORS Leipe,D.D., Wainright,P.O., Gunderson,J.H., Porter,D., Patterson,D.J., Valois,F., Himmerich,S. and Sogin,M.L. TITLE The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis JOURNAL Phycologia (1994) In press STANDARD full automatic COMMENT NCBI gi: 463193 FEATURES Location/Qualifiers primer_bind 1..21 /note="these residues correspond to the 5' amplification primer and were not determined from the coding region" primer_bind 1750..1773 /note="these residues correspond to the 3' primer and were not determined from the coding region" source 1..1773 /organism="Porphyridium aerugineum" /sequenced_mol="rRNA" BASE COUNT 449 a 351 c 495 g 467 t 11 others ORIGIN BASE COUNT 449 a 351 c 495 g 467 t 1511 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UUAUGA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ auaaaucu-- uu-------- 121 ---auac--g guga-a]--- --------|- --ACU|-GCG RAUGGCUCAU UAAAAcaguc 181 au-aauuuac uygauag<-- --uacc-uu- u-u>ACUUGG -AUACCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G ACGGUAGG-( GUAGUGG)-C CU-ACCGU|G G-UGU-UUAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGYAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acg)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GG AG-ACC-(-u uuu)-GGUUG -A-CC-ACUU GGAAYGAGU| ACAUU(U-UA 961 AAUC)ACU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G WC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUAAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-C- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGA-AAG- A-CGA-A-CC GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-ggga- uuggugg-a- cguu--(--- 1921 ccaaucu--- -------)-- -gac-uccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGCGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cag-acga- aguuaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuuuggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUG AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-AGug-ga --|uugaa-u c----(uucg ---------- 2401 ---------- ---------- -----)---g a-uu-g-aa| u-g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -g-aa-cuUC 2581 UUAGAGG]-- -|-------- -----GACAC CCU-GG(--- ---------- -----GCAA- 2641 )CCAGGAGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-agcgag 2761 -ugu------ -|-------- ----(----- --)------- ---------- |---accu-u 2821 gguc(--gga a-)ggccu-g gggaaucuug ugaaa]---- ---------- ------augc 2881 auc-gUGCUG GGGAUAGAUU AU(UGUAAUU A)UUAA-UCU UCAACGAGGA AUGCCUUGUA 2941 AGCGC-AAG( UCAUCAG)CU UGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGA UGGUCCggug aaa-uguucg gcc-ugugc- uu-g-cuu-u 3061 ---ggg---- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- ----cuc--- --ug----gc ga-gu----- gcg-gaaa|g uucauuaaac 3181 cuuaucaucu agAGGAAGGA GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Rho.macula 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodella maculata. ACCESSION No information KEYWORDS No information. SOURCE Rhodella maculata. ORGANISM Rhodella maculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U21217 LOCUS RMU21217 1758 bp rRNA PLN 16-MAR-1995 DEFINITION Rhodella maculata 18S small subunit rRNA gene. ACCESSION U21217 KEYWORDS . SOURCE Rhodella maculata. ORGANISM Rhodella maculata Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Rhodophyta; Bangiophyceae; Porphyridiales; Porphyridiaceae; Rhodella. REFERENCE 1 (bases 1 to 1758) AUTHORS Waller,R.F. and McFadden,G.I. TITLE Morphological and cytochemical analysis of an unusual nucleus-pyrenoid association in a unicellular red alga JOURNAL Protoplasma 181 (1995) In press REFERENCE 2 (bases 1 to 1758) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (16-FEB-1995) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC, 3052, Australia COMMENT NCBI gi: 710401 FEATURES Location/Qualifiers source 1..1758 /strain="CCMP 736" /organism="Rhodella maculata" rRNA 1..1758 /product="18S small subunit rRNA" BASE COUNT 454 a 352 c 484 g 465 t 3 others ORIGIN BASE COUNT 454 a 352 c 484 g 465 t 1518 others ORIGIN 1 |~~~~~~~~~ ~~~~~(GGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgc-u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugauag<-- --uacu-ga- u-u>ACUCGG -AUAACCCAA G(U-AAUU)C 241 UUGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucau uc-aa|auau cugc|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGG)-C UU-ACCAU|G G-UGG-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAUG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGGUA-GA GC-GCC-(cu cgu)-GGUGU CU-CU-AAUU GGAAUGAGU| ACAAU(U-UA 961 AAAU)UGU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGG-AUUCCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UA 1741 G-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGga- ucaggcg-a- gc----(--a 1921 caauugaa-- -------)-- --ac-ucgcu uggcacccc- -gaGG(-GAA A)CCA--AAG 1981 UU-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAGAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- aguaaggauu gac-aga(uu -gauag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGN-GGUG CAUG|GAC-| Gn-nCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUGA|--- ---------- 2341 ----(----- )[CCUACUAA CU-AGcu-gu --|gggaa-u -----(uucg ---------- 2401 ---------- ---------- -----)---- a-uu-cacc| --ag------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -g-ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCG-GU(--- ---------- ----UUUUA- 2641 )GCCGGUGGA AGAUCGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uug------ -|-------- ----(----- --)------- ---------- |-caccuu-- 2821 ggcu(-ggga a-)gccc--g ggaaaucuu- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUUGGUC UC(UGUAAG- -)UGGA-CCA UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GCU( UCAUCAG)AG CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aag-cucuag gac-cgagu- ca-u-gcg-a 3061 g-cugg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- ----cua-gc -uug----cg ug-au----- uug-gaaa|u ugcgcuaaau 3181 uguaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)C~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sty.alsidi 3273 bp RNA RNA 30-JUN-1994 DEFINITION Stylonema alsidii. ACCESSION No information KEYWORDS No information. SOURCE Stylonema alsidii. ORGANISM Stylonema alsidii. REFERENCE 1 (bases 1 to 2340) AUTHORS Mark Ragan JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26204 LOCUS SYZFRA 1802 bp DNA PLN 30-JUN-1994 DEFINITION Stylonema alsidii DNA fragment. ACCESSION L26204 NID g507800 KEYWORDS PCR amplified. SOURCE Stylonema alsidii DNA. ORGANISM Stylonema alsidii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Porphyridiales; Porphyridiaceae; Stylonema. REFERENCE 1 (bases 1 to 1802) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1802 /organism="Stylonema alsidii" /db_xref="taxon:35155" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1778..1802 /standard_name="PCR primer" /note="putative" BASE COUNT 482 a 362 c 468 g 489 t 1 others BASE COUNT 482 a 362 c 468 g 489 t 1472 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAG UCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaa-a uc-------- 121 --uauau--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- --uacc-ua- c-u>ACUUGG -AUAACCGUA G(U-AAC-)C 241 UAGAGCUAA- UACRUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UCAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACGAAC-GG AG-GCUU(-- uuc)AAGUGU -C-CG-UCUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AAC>CACUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAGUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUCUG CCAA|G-GAU GUCUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGga- ucgguag-c- uucuu-(--- 1921 --uuca---- -------)-a auaa-gcuau cggcacccu- -aaGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGCAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGcg-ac --|gcgaa-u -----(cuuc gu-------- 2401 ---------- ---------- -----)---- a-uu-c-gc| g-g------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------a| ca-cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- -gauUACCA- 2641 )ACGGAUGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |ucauccu-u 2821 gguc(--gga a-)ggccu-g gguaaucuuu ugaaa]---- ---------- ------uugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGGAAUU A)UUAA-UCU UGAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguucg gau-uggga- cg-u-auacu 3061 g-ccggu--- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----acu-gg -cga----uu cg-uc----- ccg-agaa|g uucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUAG-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Compso 3273 bp RNA RNA 08-JAN-1999 DEFINITION Compsopogonales. ACCESSION No information KEYWORDS No information. SOURCE Compsopogonales. ORGANISM Compsopogonales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Com.lept.2 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados. REFERENCE 1 (bases 1 to 2340) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087125 LOCUS AF087125 1793 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados from Hawaii 18S ribosomal RNA gene, partial sequence. ACCESSION AF087125 NID g6002523 VERSION AF087125.1 GI:6002523 KEYWORDS . SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogonopsis. REFERENCE 1 (bases 1 to 1793) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1793) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1793 /organism="Compsopogonopsis leptoclados" /db_xref="taxon:82540" /country="USA: Hawaii 14" rRNA <1..>1793 /product="18S ribosomal RNA" BASE COUNT 455 a 348 c 500 g 490 t 1480 others ORIGIN 1 |~~~~~~~~~ ~GGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GAAGUAU-G GUC(GCAA)G GUU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAA~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.lept.1 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE on the freshwater families Systematics of the Compsopogonales (Rhodophyta) with emphasis JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3004) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. JOURNAL Submitted (26-AUG-1998) Department of Botany, University STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087123 LOCUS AF087123 1771 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogonopsis leptoclados from New Mexico 18S ribosomal RNA gene, partial sequence. ACCESSION AF087123 NID g6002521 VERSION AF087123.1 GI:6002521 KEYWORDS . SOURCE Compsopogonopsis leptoclados. ORGANISM Compsopogonopsis leptoclados Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogonopsis. REFERENCE 1 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Compsopogonopsis leptoclados" /db_xref="taxon:82540" /country="USA: New Mexico, Blue Hole" rRNA <1..>1771 /product="18S ribosomal RNA"ref:1 (bases 1 to 1771) BASE COUNT 446 a 345 c 491 g 488 t 1503 others ORIGIN 1 |~~~~~~~~~ UGGUU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu anAGGAAGGA GAAG-UCGUA ACAAGGUUU- C~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.coer.1 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogon coeruleus.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087124 LOCUS AF087124 1762 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogon coeruleus from Florida 18S ribosomal RNA gene, partial sequence. ACCESSION AF087124 NID g6002522 VERSION AF087124.1 GI:6002522 KEYWORDS . SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogon. REFERENCE 1 (bases 1 to 1762) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1762) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1762 /organism="Compsopogon coeruleus" /db_xref="taxon:31354" /country="USA: Florida 27" rRNA <1..>1762 /product="18S ribosomal RNA" BASE COUNT 438 a 340 c 481 g 469 t 1545 others ORIGIN 1 |~~~~~~~~~ ~GGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-G-CAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 A-CGA-AAG- U-AGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu agAGGAAGGA GAAG-UCGUA ACA~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.coer.2 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogon coeruleus.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE on the freshwater families Systematics of the Compsopogonales (Rhodophyta) with emphasis JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087127 LOCUS AF087127 1778 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogon coeruleus from Saint Lucia 18S ribosomal RNA gene, partial sequence. ACCESSION AF087127 NID g6002525 VERSION AF087127.1 GI:6002525 KEYWORDS . SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogon. REFERENCE 1 (bases 1 to 1778) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1778) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1778 /organism="Compsopogon coeruleus" /db_xref="taxon:31354" /country="Saint Lucia" rRNA <1..>1778 /product="18S ribosomal RNA" BASE COUNT 433 a 338 c 477 g 465 t 1560 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~UCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-G-CAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1741 NNNNNNNNNN NNNGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucguuu agAGGAAGGA GAAG-UCGUA ACAAGGUUC- -cgaagg(nn nc)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Com.coer.3 3273 bp RNA RNA 01-OCT-1999 DEFINITION Compsopogon coeruleus.. ACCESSION No information KEYWORDS No information. SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087128 LOCUS AF087128 1769 bp DNA PLN 01-OCT-1999 DEFINITION Compsopogon coeruleus from Louisiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF087128 NID g6002526 VERSION AF087128.1 GI:6002526 KEYWORDS . SOURCE Compsopogon coeruleus. ORGANISM Compsopogon coeruleus Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Compsopogonaceae; Compsopogon. REFERENCE 1 (bases 1 to 1769) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Compsopogon coeruleus" /db_xref="taxon:31354" /country="USA: Louisiana, Whiskey Chitto" rRNA <1..>1769 /product="18S ribosomal RNA" BASE COUNT 448 a 345 c 493 g 483 t 1504 others ORIGIN 1 |~~~~~CA-- CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaac---u uu-------- 121 --uauac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugauag<-- -uaccu-uu- --u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUA-GA GG-GCAC(-u uuu)GUGUUU -U-CU-UAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-a- cgucg-(--- 1921 -aguuu---- -------)-- -ugacuccau cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCuAA CU-Agcu-ac --|gcgaa-u -----(cuug c--------- 2401 ---------- ---------- -----)---- a-uu-g-gc| g--g-gc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCA -AUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuug----- -|-------- ---------- ---------- ---------- |uggaccu-u 2821 ggcc(--gga a-)ggccu-g gguaaucuc- ugaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA CGGUCCggug aag-uguucg gac-uguga- cu-g-ugu-u 3061 g-ccgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gg -cug----gc gg-cc----- gcg-ggaa|g uucauuaaac 3181 cuuaucg-uu agAGGAAGGA GAAG-AGUGG A---AGUca- a~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bol.erythr 3273 bp RNA RNA 05-APR-1998 DEFINITION Boldia erythrosiphon.. ACCESSION No information KEYWORDS No information. SOURCE Boldia erythrosiphon. ORGANISM Boldia erythrosiphon. REFERENCE 2 (bases 1 to 1771) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Phylogenetic relationships of the freshwater alga Boldia erythrosiphon (Compsopogonales, Rhodophyta) based on 18S rRNA gene sequences JOURNAL J. Phycol. 34 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF055299 LOCUS AF055299 1786 bp DNA PLN 05-APR-1998 DEFINITION Boldia erythrosiphon 18S ribosomal RNA gene, partial sequence. ACCESSION AF055299 NID g3023153 KEYWORDS . SOURCE Boldia erythrosiphon. ORGANISM Boldia erythrosiphon Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Boldia. REFERENCE 1 (bases 1 to 1786) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Phylogenetic relationships of the freshwater alga Boldia erythrosiphon (Compsopogonales, Rhodophyta) based on 18S rRNA gene sequences JOURNAL J. Phycol. 34 (1998) In press REFERENCE 2 (bases 1 to 1786) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Direct Submission JOURNAL Submitted (23-MAR-1998) Marine Biology, Biological Centre, P.O. Box 14, Haren 9750 AA, The Netherlands FEATURES Location/Qualifiers source 1..1786 /organism="Boldia erythrosiphon" /db_xref="taxon:74908" rRNA <1..>1786 /product="18S ribosomal RNA" BASE COUNT 434 a 331 c 496 g 466 t 59 others BASE COUNT 434 a 331 c 496 g 466 t 1546 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ augaacau-c uu-------- 121 --uguac--u guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcagua 181 au-aauuuau nugaugg<-- -uaccu-cg- u-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-GA AG-GCUC(-u uuu)GGGUUU -U-CU-AAUU GGAAUGAGU| ACAAU(U-UG 961 ANUC)UCU|U -AACGA-GU- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUNGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-CGA-AAG- A-CGA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuggugg-g- gauc--(--- 1921 --gaag---- -------)-a augagcccac cagcacccu- -auGA(-GAA A)UCA--AAG 1981 UG-uuugGGU |-U|CUGGGG -NNAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAUUGUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-gc -g|ggaau-u -----(gcug a--------- 2401 ---------- ---------- -----)---- g-au-g-cc| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gg-ag-cu-c 2581 -UAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- -gannnnnn- 2641 )nnnnnNNNN NNNUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-agcgag 2761 -u-u------ -|-------- ----(----- --)------- ---------- |-ggaccu-u 2821 ugcc(--gga a-)ggcgc-g gguaaucuc- ugaac]---- ---------- ------cugc 2881 auc-gUGCUG GGGCUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AS----gag( ucau---)mk cgCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACAGCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGAUCUcgag uguacaucug uuc-ggacu- gcgg-cuggc 3061 u-ggcggg-- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cc-gk -ggc----c- gg-uc----- ugc-ggaa|a gucauugaac 3181 yuuaumauuu agAGGAAGGA GAAG-USGUA ACAAGGUUU- CCGUAG-(UG AA)CCUGC~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Smi.naia.2 3273 bp RNA RNA 01-OCT-1999 DEFINITION Smithora naiadum.. ACCESSION No information KEYWORDS No information. SOURCE Smithora naiadum. ORGANISM Smithora naiadum. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087129 LOCUS AF087129 1715 bp DNA PLN 01-OCT-1999 DEFINITION Smithora naiadum from United Kingdom 18S ribosomal RNA gene, partial sequence. ACCESSION AF087129 NID g6002527 VERSION AF087129.1 GI:6002527 KEYWORDS . SOURCE Smithora naiadum. ORGANISM Smithora naiadum Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Erythropeltidaceae; Smithora. REFERENCE 1 (bases 1 to 1715) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1715) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1715 /organism="Smithora naiadum" /db_xref="taxon:82561" /country="United Kingdom: Sooke, Whiffen Spit" rRNA <1..>1715 /product="18S ribosomal RNA" BASE COUNT 437 a 348 c 441 g 455 t 1592 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~CUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaac-g-u uu-------- 121 --uauac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcagua 181 uu-aauucau uugaugg<-- --uacc-uu- uuu>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAKCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAA--)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|YAGU-U- 1681 GGGGGCACU| CGU-AUNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 N-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCACUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguua-(--- 1921 ----uu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|acgaa-u -----(cuug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 gacc(--gga a-)ggucc-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- ug-a-uug-c 3061 c-ucgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu anAGGAAGGA GAAA-UC~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Smi.naia.1 3273 bp RNA RNA 01-OCT-1999 DEFINITION Smithora naiadum.. ACCESSION No information KEYWORDS No information. SOURCE Smithora naiadum. ORGANISM Smithora naiadum. REFERENCE 2 (bases 1 to 1771) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE on the freshwater families Systematics of the Compsopogonales (Rhodophyta) with emphasis JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF087126 LOCUS AF087126 1782 bp DNA PLN 01-OCT-1999 DEFINITION Smithora naiadum from California 18S ribosomal RNA gene, partial sequence. ACCESSION AF087126 NID g6002524 VERSION AF087126.1 GI:6002524 KEYWORDS . SOURCE Smithora naiadum. ORGANISM Smithora naiadum Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Erythropeltidaceae; Smithora. REFERENCE 1 (bases 1 to 1782) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Systematics of the Compsopogonales (Rhodophyta) with emphasis on the freshwater families JOURNAL Unpublished REFERENCE 2 (bases 1 to 1782) AUTHORS Sheath,R.G., Rintoul,T.L. and Vis,M.L. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1782 /organism="Smithora naiadum" /db_xref="taxon:82561" /country="USA: California, Moss Beach" rRNA <1..>1782 /product="18S ribosomal RNA" BASE COUNT 462 a 360 c 467 g 491 t 1493 others ORIGIN 1 |~~~~~~~~~ ugGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaac-g-u uu-------- 121 --uauac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugg<-- --uacc-uu- uuu>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAA--)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCACUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguua-(--- 1921 ----uu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|acgaa-u -----(cuug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 gacc(--gga a-)ggucc-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-guGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- ug-a-uug-c 3061 c-ucgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu anAGGAAGGA GAAA-UCGUA MCAAGGUUU- CCGUAGG(UG AA)CCUGCA- 3241 AAGGAA~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Rho.parvul 3273 bp RNA RNA 11-JAN-1999 DEFINITION Rhodochaete parvula. ACCESSION No information KEYWORDS No information. SOURCE Rhodochaete parvula. ORGANISM Rhodochaete parvula. REFERENCE 2 (bases 1 to 1771) AUTHORS Zuccarello,G.C., West,J.A., Bitans,A. and Kraft,G TITLE Phylogeny of Rhodochaete parvula from Australia JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF139462 LOCUS AF139462 1762 bp DNA PLN 22-DEC-1999 DEFINITION Rhodochaete parvula small subunit ribosomal RNA gene, complete sequence. ACCESSION AF139462 NID g6625660 VERSION AF139462.1 GI:6625660 KEYWORDS . SOURCE Rhodochaete parvula. ORGANISM Rhodochaete parvula Eukaryota; Rhodophyta; Bangiophyceae; Rhodochaetales; Rhodochaetaceae; Rhodochaete. REFERENCE 1 (bases 1 to 1762) AUTHORS Zuccarello,G.C., West,J.A., Bitans,A. and Kraft,G. TITLE Phylogeny of Rhodochaete parvula from Australia JOURNAL Unpublished REFERENCE 2 (bases 1 to 1762) AUTHORS Zuccarello,G.C. and West,J.A. TITLE Direct Submission JOURNAL Submitted (30-MAR-1999) School of Biological Science, University of New South Wales, Sydney, NSW 2052, Australia FEATURES Location/Qualifiers source 1..1762 /organism="Rhodochaete parvula" /db_xref="taxon:110510" /country="Australia:Point Lonsdale" rRNA 1..1762 /product="small subunit ribosomal RNA" BASE COUNT 459 a 363 c 460 g 476 t 1515 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgu-u uu-------- 121 --uauac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugg<-- --uuaa-cc- u-u>ACUCGG -AUACCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGN 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GNCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GG AG-GCCU(-u uuc)AGGUUU -C-CC-AAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-NN- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CC ACUGC(-GAA A)GC|AUUUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagccg-a- uguuc-(--- 1921 ---uuu---- -------)-- -ugacgcggu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|aucaa-u -----(ccug u--------- 2401 ---------- ---------- -----)---- a-uu-g-au| g--g------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuc------ -|-------- ----(----- --)------- ---------- |--cuccu-u 2821 gacc(--gga a-)gguau-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-gUGAUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UAAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGG ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- cg-a-acg-c 3061 u-uugg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-au -cgc----au cg-cc----- gcg-gaaa|g uucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCG-A ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCua~~ ~~~~~~~~|| ||| // LOCUS (5)-Erythr 3273 bp RNA RNA 08-JAN-1999 DEFINITION Erythropeltidales. ACCESSION No information KEYWORDS No information. SOURCE Erythropeltidales. ORGANISM Erythropeltidales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .-........ .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Erythr.sp. 3273 bp RNA RNA 24-JAN-191 DEFINITION Erythrocladia sp.. ACCESSION No information KEYWORDS No information. SOURCE Erythrocladia sp. ORGANISM Erythrocladia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26188 Erythrocladia _______ (Carolyn has the species name, but she's at lunch now) Mark Ragan LOCUS EYAFRA 1793 bp ds-DNA PLN 30-JUN-1994 DEFINITION Erythrocladia sp. DNA fragment. ACCESSION L26188 KEYWORDS PCR amplified. SOURCE Erythrocladia sp. DNA. ORGANISM Erythrocladia sp. Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Compsopogonales; Compsopogonaceae. REFERENCE 1 (bases 1 to 1793) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507241 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1767..1793 /standard_name="PCR primer" /note="putative" source 1..1793 /organism="Erythrocladia sp." /sequenced_mol="DNA" BASE COUNT 460 a 368 c 477 g 488 t BASE COUNT 460 a 368 c 477 g 488 t 1480 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgu-u uu-------- 121 ---auac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugg<-- --uacc-uc- u-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGCGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAACC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGG-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguua-(--- 1921 ---uuu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-Agcu-ac --|acgaa-u -----(ccug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -cuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuc- ucaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- cg-a-uug-c 3061 u-ucgg---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGU~~~~ ~~~~~~~~|| ||| // LOCUS E.carnea 3273 bp RNA RNA 24-JAN-191 DEFINITION Erythrotrichia carnea. ACCESSION No information KEYWORDS No information. SOURCE Erythrotrichia carnea. ORGANISM Erythrotrichia carnea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26189 ERYTHROTRICHIA CARNEA LOCUS EYTFRA 1795 bp ds-DNA PLN 30-JUN-1994 DEFINITION Erythrotrichia carnea DNA fragment. ACCESSION L26189 KEYWORDS PCR amplified. SOURCE Erythrotrichia carnea DNA. ORGANISM Erythrotrichia carnea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Compsopogonales; Compsopogonaceae. REFERENCE 1 (bases 1 to 1795) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507242 FEATURES Location/Qualifiers primer_bind 1..21 /standard_name="PCR primer" /note="putative" primer_bind 1769..1795 /standard_name="PCR primer" /note="putative" source 1..1795 /organism="Erythrotrichia carnea" /sequenced_mol="DNA" BASE COUNT 465 a 367 c 472 g 491 t BASE COUNT 465 a 367 c 472 g 491 t 1478 others ORIGIN 1 |~~~~~CAAC CUGGU(-GA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgu-u uu-------- 121 ---auac--c guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aauuuau uugaugu<-- uuuacc-au- u-u>ACUUGG AAUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucau uc-aa|auuu cugc|CCUAU 601 CAACUUUC-G AUGGUAGG-( GUAGUGG)-C CU-ACCAU|G G-UGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-GA AG-GCCU(-u uua)AGGUUU -U-CC-ACUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGCACU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUUUG CCAA|G-GAU GUUUUCACUG 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAC- G(A-UUAG-A -UAC)C-GUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UG|-GGGA- Uuagcag-a- uguca-(--- 1921 ---acu---- -------)-- -ugacucugu uagcacccu- -auGA(-GAA A)UCA--AAG 1981 UC-uuugGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cucucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUUAA|--- ---------- 2341 ----(----- )[CCUGCUAA CU-agcu-ac --|acgaa-u -----(cuug u--------- 2401 ---------- ---------- -----)---- a-uu-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gccag-cuUC 2581 UUAGAGG]-- -|-------- -----GACUA UCC-GU(--- ---------- ----GACUA- 2641 )ACGGAUGGA GGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-agcgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuc- uuaaa]---- ---------- ------cugc 2881 auc-gUGCUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAA UGGUCCggug aaa-uguccg gac-ugcgg- cg-a-ucg-c 3061 u-ucgg---- ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- -----cc-gu -cgc----gu cg-cu----- gcg-gaaa|g cucauuaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Florid 3273 bp RNA RNA 24-JAN-191 DEFINITION Florideophyceae. ACCESSION No information KEYWORDS No information. SOURCE Florideophyceae. ORGANISM Florideophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (5)-Acroch 3273 bp RNA RNA 24-JAN-191 DEFINITION Acrochaetiales. ACCESSION No information KEYWORDS No information. SOURCE Acrochaetiales. ORGANISM Acrochaetiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Aud.arcuat 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella arcuata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella arcuata. ORGANISM Audouinella arcuata. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079786 LOCUS AF079786 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella arcuata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079786 NID g3406782 KEYWORDS . SOURCE Audouinella arcuata. ORGANISM Audouinella arcuata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella arcuata" /db_xref="taxon:69141" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 429 a 385 c 515 g 442 t BASE COUNT 429 a 385 c 515 g 442 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-Aggg-gc --|cgcua-c -----(auuu u-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-cgcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.amphir 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella amphiroae.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella amphiroae. ORGANISM Audouinella amphiroae. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079785 LOCUS AF079785 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella amphiroae small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079785 NID g3406781 KEYWORDS . SOURCE Audouinella amphiroae. ORGANISM Audouinella amphiroae Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella amphiroae" /db_xref="taxon:79935" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 427 a 376 c 517 g 450 t BASE COUNT 427 a 376 c 517 g 450 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcuu--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cuuu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.aspara 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella asparagopsis.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella asparagopsis. ORGANISM Audouinella asparagopsis. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079795 LOCUS AF079795 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella asparagopsis small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079795 NID g3406791 KEYWORDS . SOURCE Audouinella asparagopsis. ORGANISM Audouinella asparagopsis Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella asparagopsis" /db_xref="taxon:79936" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 428 a 378 c 518 g 447 t BASE COUNT 428 a 378 c 518 g 447 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-c------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcgc---- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----gcg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.caespi 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella caespitosa.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella caespitosa. ORGANISM Audouinella caespitosa. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079787 LOCUS AF079787 1769 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella caespitosa small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079787 NID g3406783 KEYWORDS . SOURCE Audouinella caespitosa. ORGANISM Audouinella caespitosa Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1769) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Audouinella caespitosa" /db_xref="taxon:79937" primer_bind 1..20 /note="G01" rRNA 21..1741 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="G07 complement" BASE COUNT 430 a 376 c 511 g 452 t BASE COUNT 430 a 376 c 511 g 452 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)UAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-uacug- ug-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.dasyae 3273 bp RNA RNA 24-JAN-191 DEFINITION Audouinella dasyae. ACCESSION No information KEYWORDS No information. SOURCE Audouinella dasyae. ORGANISM Audouinella dasyae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26181 LOCUS AUDFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Audouinella dasyae DNA fragment. ACCESSION L26181 KEYWORDS PCR primer. SOURCE Audouinella dasyae DNA. ORGANISM Audouinella dasyae Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Acrochaetiales; Acrochaetiaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507221 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" source 1..1771 /organism="Audouinella dasyae" /sequenced_mol="DNA" BASE COUNT 434 a 375 c 514 g 448 t BASE COUNT 434 a 375 c 514 g 448 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gggag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu ccug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Aud.davies 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella daviesii.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella daviesii. ORGANISM Audouinella daviesii. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079788 LOCUS AF079788 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella daviesii small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079788 NID g3406784 KEYWORDS . SOURCE Audouinella daviesii. ORGANISM Audouinella daviesii Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella daviesii" /db_xref="taxon:79938" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 430 a 375 c 516 g 449 t BASE COUNT 430 a 375 c 516 g 449 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gu --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.endoph 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella endophytica.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella endophytica. ORGANISM Audouinella endophytica. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079789 LOCUS AF079789 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella endophytica small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079789 NID g3406785 KEYWORDS . SOURCE Audouinella endophytica. ORGANISM Audouinella endophytica Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella endophytica" /db_xref="taxon:79939" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 432 a 380 c 510 g 448 t BASE COUNT 432 a 380 c 510 g 448 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAUAAcaguu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UUAC |GGGUCACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --caug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gggc(--gaa a-)gcucu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-cgcua- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.pectin 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella pectinata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella pectinata. ORGANISM Audouinella pectinata. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079790 LOCUS AF079790 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella pectinata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079790 NID g3406786 KEYWORDS . SOURCE Audouinella pectinata. ORGANISM Audouinella pectinata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella pectinata" /db_xref="taxon:79940" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 430 a 378 c 515 g 448 t BASE COUNT 430 a 378 c 515 g 448 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-u -----(cauu g-u------- 2401 ---------- ---------- -----)---- a-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcgc---- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----gcg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.proska 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella proskaueri.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella proskaueri. ORGANISM Audouinella proskaueri. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079791 LOCUS AF079791 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella proskaueri small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079791 NID g3406787 KEYWORDS . SOURCE Audouinella proskaueri. ORGANISM Audouinella proskaueri Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella proskaueri" /db_xref="taxon:79941" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 430 a 376 c 516 g 449 t BASE COUNT 430 a 376 c 516 g 449 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-u -----(cauu g-u------- 2401 ---------- ---------- -----)---- a-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcgc---- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ----gcg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.rhizoi 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella rhizoidea.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella rhizoidea. ORGANISM Audouinella rhizoidea. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079792 LOCUS AF079792 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella rhizoidea small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079792 NID g3406788 KEYWORDS . SOURCE Audouinella rhizoidea. ORGANISM Audouinella rhizoidea Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella rhizoidea" /db_xref="taxon:79942" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 431 a 376 c 513 g 450 t BASE COUNT 431 a 376 c 513 g 450 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)UAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.secund 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella secundata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella secundata. ORGANISM Audouinella secundata. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079784 LOCUS AF079784 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella secundata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079784 NID g3406780 KEYWORDS . SOURCE Audouinella secundata. ORGANISM Audouinella secundata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella secundata" /db_xref="taxon:79943" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 427 a 384 c 517 g 443 t BASE COUNT 427 a 384 c 517 g 443 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(auuu u-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(ucua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.tenue 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella tenue.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella tenue. ORGANISM Audouinella tenue. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079796 LOCUS AF079796 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella tenue small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079796 NID g3406792 KEYWORDS . SOURCE Audouinella tenue. ORGANISM Audouinella tenue Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella tenue" /db_xref="taxon:79944" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 428 a 384 c 516 g 443 t BASE COUNT 428 a 384 c 516 g 443 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-uc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.tetras 3273 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella tetraspora.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella tetraspora. ORGANISM Audouinella tetraspora. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079793 LOCUS AF079793 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella tetraspora small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079793 NID g3406789 KEYWORDS . SOURCE Audouinella tetraspora. ORGANISM Audouinella tetraspora Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella tetraspora" /db_xref="taxon:79945" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 433 a 375 c 512 g 449 t 1 others BASE COUNT 433 a 375 c 512 g 449 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gu------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-uc-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AACGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 uuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.herman 3273 bp RNA RNA 24-JUL-1998 DEFINITION Audouinella hermannii.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella hermannii. ORGANISM Audouinella hermannii. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026040 LOCUS AF026040 1771 bp DNA PLN 24-JUL-1998 DEFINITION Audouinella hermannii 18S small subunit ribosomal ribosomal RNA gene, complete sequence. ACCESSION AF026040 NID g2564923 KEYWORDS . SOURCE Audouinella hermannii. ORGANISM Audouinella hermannii Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 3 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella hermannii" /isolate="G0164" /db_xref="taxon:31360" /note="synonym: Audouinella violacea" primer_bind 1..20 /note="primer G01" rRNA 1..1771 /product="18S small subunit ribosomal rRNA" primer_bind complement(1744..1771) /note="primer G07" BASE COUNT 427 a 387 c 518 g 439 t BASE COUNT 427 a 387 c 518 g 439 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gu-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.macr.1 3273 bp RNA RNA 02-DEC-1999 DEFINITION Audouinella macrospora. str. 3394 small subunit ribosomal RNA gene, complete sequence. ACCESSION No information KEYWORDS No information. SOURCE Audouinella macrospora. str. 3394 small subunit ribosomal RNA gene, complete sequence. ORGANISM Audouinella macrospora. REFERENCE 2 (bases 1 to 1771) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF199505 LOCUS AF199505 1768 bp DNA PLN 02-DEC-1999 DEFINITION Audouinella macrospora strain 3394 small subunit ribosomal RNA gene, complete sequence. ACCESSION AF199505 NID g6503179 VERSION AF199505.1 GI:6503179 KEYWORDS . SOURCE Audouinella macrospora. ORGANISM Audouinella macrospora Eukaryota; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Direct Submission JOURNAL Submitted (28-OCT-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Audouinella macrospora" /strain="3394" /db_xref="taxon:109050" rRNA 1..1768 /product="small subunit ribosomal RNA" BASE COUNT 424 a 394 c 519 g 431 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u -c-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcaguu 181 au-aguuucu ucgaugc<-- --uacu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-AUCAU|G G-UUG-UGAC |AGGUCACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGC(-a uau)GCGUCU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUC| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|gggua-c -----(ccgu gug------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --g--u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugccg- cg-a-cug-g 3061 g-g------- ---------- ---------- --(uucacu- -)-------- ---------- 3121 ---------- --------cc -cug----gc cg-ca----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Aud.macr.2 3273 bp RNA RNA 02-DEC-1999 DEFINITION Audouinella macrospora. str. 3603 small subunit ribosomal RNA gene, complete sequence. ACCESSION No information KEYWORDS No information. SOURCE Audouinella macrospora. str. 3603 small subunit ribosomal RNA gene, complete sequence. ORGANISM Audouinella macrospora. REFERENCE 2 (bases 1 to 1771) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure Affinities of the freshwater red alga Audouinella macrospora JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF199506 LOCUS AF199506 1768 bp DNA PLN 02-DEC-1999 DEFINITION Audouinella macrospora strain 3603 small subunit ribosomal RNA gene, complete sequence. ACCESSION AF199506 NID g6503180 VERSION AF199506.1 GI:6503180 KEYWORDS . SOURCE Audouinella macrospora. ORGANISM Audouinella macrospora Eukaryota; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1768) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Direct Submission JOURNAL Submitted (28-OCT-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Audouinella macrospora" /strain="3603" /db_xref="taxon:109050" rRNA 1..1768 /product="small subunit ribosomal RNA" BASE COUNT 423 a 394 c 520 g 431 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u -c-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcaguu 181 au-aguuucu ucgaugc<-- --uacu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-AUCAU|G G-UUG-UGAC |AGGUCACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGC(-a uau)GCGUCU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUC| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|gggua-c -----(ccgu gug------- 2401 ---------- ---------- -----)---- g-ua-g-cu| --g--u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugccg- cg-a-cug-g 3061 g-g------- ---------- ---------- --(uucgcu- -)-------- ---------- 3121 ---------- --------cc -cug----gc cg-ca----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Chantr.sp. 3273 bp RNA RNA 02-DEC-1999 DEFINITION Chantransia sp.. ACCESSION No information KEYWORDS No information. SOURCE Chantransia sp. ORGANISM Chantransia sp. REFERENCE 2 (bases 1 to 1771) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF199507 LOCUS AF199507 1766 bp DNA PLN 02-DEC-1999 DEFINITION Chantransia sp. small subunit ribosomal RNA gene, complete sequence. ACCESSION AF199507 NID g6503181 VERSION AF199507.1 GI:6503181 KEYWORDS . SOURCE Chantransia sp. ORGANISM Chantransia sp. Eukaryota; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Chantransia. REFERENCE 1 (bases 1 to 1766) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Affinities of the freshwater red alga Audouinella macrospora (Florideophyceae, Rhodophyta) and related forms based on small subunit ribosomal RNA gene sequence analysis and pit plug ultrastructure JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1766) AUTHORS Pueschel,C.M., Saunders,G.W. and West,J.A. TITLE Direct Submission JOURNAL Submitted (28-OCT-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Chantransia sp." /strain="3585" /db_xref="taxon:109052" rRNA 1..1766 /product="small subunit ribosomal RNA" BASE COUNT 353 a 321 c 397 g 338 t 1864 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(A-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN N|NNNNNN-N NNNN--NNNN NN|NNNNNNN 1081 NNNNNNNNNN N|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN NNGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CNUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU C)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cguug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uuuguu- -)-------- ---------- 3121 ---------- --------cu -ccg----gc cg-cg----- aug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cam.oxycla 3273 bp RNA RNA 10-AUG-1998 DEFINITION Camontagnea oxyclada.. ACCESSION No information KEYWORDS No information. SOURCE Camontagnea oxyclada. ORGANISM Camontagnea oxyclada. REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF079794 LOCUS AF079794 1771 bp DNA PLN 10-AUG-1998 DEFINITION Camontagnea oxyclada small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079794 NID g3406790 KEYWORDS . SOURCE Camontagnea oxyclada. ORGANISM Camontagnea oxyclada Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Camontagnea. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Camontagnea oxyclada" /db_xref="taxon:79947" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 433 a 379 c 512 g 447 t BASE COUNT 433 a 379 c 512 g 447 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Agga-gc --|cgcua-c -----(cguu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-u------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- -------uc| gc-uu-cUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u ccgaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc ca-ua----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Rho.purpur 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodochorton purpureum. ACCESSION No information KEYWORDS No information. SOURCE Rhodochorton purpureum. ORGANISM Rhodochorton purpureum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23816 LOCUS RPU23816 1771 bp DNA PLN 06-SEP-1995 DEFINITION Rhodochorton purpureum 18S ribosomal RNA gene, complete sequence. ACCESSION U23816 KEYWORDS . SOURCE Rhodochorton purpureum. ORGANISM Rhodochorton purpureum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Rhodochorton. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975286 FEATURES Location/Qualifiers source 1..1771 /isolate="culture GWS3112" /organism="Rhodochorton purpureum" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 427 a 383 c 517 g 444 t ORIGIN BASE COUNT 427 a 383 c 517 g 444 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCAU(-u uau)AUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-uc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-cu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gu-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-gaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Ahnfel 3273 bp RNA RNA 24-JAN-191 DEFINITION Ahnfeltiales. ACCESSION No information KEYWORDS No information. SOURCE Ahnfeltiales. ORGANISM Ahnfeltiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Ahn.plicat 3273 bp RNA RNA 24-JAN-191 DEFINITION Ahnfeltia plicata. ACCESSION No information KEYWORDS No information. SOURCE Ahnfeltia plicata. ORGANISM Ahnfeltia plicata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Z14139 ID AP18SRRNG standard; DNA; PLN; 1765 BP. XX AC Z14139; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE A.plicata gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Ahnfeltia plicata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Phyllophoraceae. XX RN [1] RP 1-1765 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1765 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1765 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note="PCR_primer" /citation= ([1]) FT misc_feature 1739..1765 FT /note="PCR_primer" /citation= ([1]) XX SQ Sequence 1765 BP; 418 A; 393 C; 531 G; 423 T; 0 other; BASE COUNT 418 a 393 c 531 g 423 t 1508 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUCGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUU--G ACGUGAAG-( GUAUUGU)-C UU-CACGU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AAUA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGCUUGCGU A|UGUCAC-C GAUG--AUGC GG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAG-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gacu--(--- 1921 gaa-uuu--- -------)-- -ggc-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGg-cg --|ggcua-u c----(gcuu ---------- 2401 ---------- ---------- -----)---g a-ua-g-ua| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------c| ug-aC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaacccc- -caaa]---- ---------- ------cccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU A)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GGG( UCAUCAU)CC CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acucgg gac-cgcgc- cg-a-cua-g 3061 c-gcgu---- ---------- ---------- --(cua---- -)-------- ---------- 3121 ---------- ----acg-cg -uug----gu ug-uu----- gug-gaaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Balbia 3273 bp RNA RNA 24-JAN-191 DEFINITION Balbianiales. ACCESSION No information KEYWORDS No information. SOURCE Balbianiales. ORGANISM Balbianiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Rho.oregon 3273 bp RNA RNA 05-NOV-1997 DEFINITION Rhododraparnaldia oregonica.. ACCESSION No information KEYWORDS No information. SOURCE Rhododraparnaldia oregonica. ORGANISM Rhododraparnaldia oregonica. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026043 OCUS AF026043 1771 bp DNA PLN 05-NOV-1997 DEFINITION Rhododraparnaldia oregonica 18S ribosomal RNA gene, complete sequence. ACCESSION AF026043 NID g2564926 KEYWORDS . SOURCE Rhododraparnaldia oregonica. ORGANISM Rhododraparnaldia oregonica Eukaryotae; Rhodophyta; Florideophyceae; Acrochaetiales; unclassified Acrochaetiales; Rhododraparnaldia. REFERENCE 1 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Rhododraparnaldia oregonica" /db_xref="taxon:67958" primer_bind 1..20 rRNA 1..1771 /product="18S rRNA" primer_bind complement(1744..1771) BASE COUNT 430 a 383 c 518 g 440 t BASE COUNT 430 a 383 c 518 g 440 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggca-g- gcau--(--- 1921 --uacg---- -------)-a ugac-cuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| g-cu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uuua----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-auuugg gac-ugcug- cg-a-ucg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Batrac 3273 bp RNA RNA 24-JAN-191 DEFINITION Batrachospermales. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermales. ORGANISM Batrachospermales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Bat.gelati 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum gelatinosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum gelatinosum. ORGANISM Batrachospermum gelatinosum. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026045 LOCUS AF026045 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum gelatinosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026045 NID g2564928 KEYWORDS . SOURCE Batrachospermum gelatinosum. ORGANISM Batrachospermum gelatinosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum gelatinosum" /db_xref="taxon:69143" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 425 a 382 c 522 g 436 t BASE COUNT 425 a 382 c 522 g 436 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.boryan 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum boryanum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum boryanum. ORGANISM Batrachospermum boryanum. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026044 LOCUS AF026044 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum boryanum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026044 NID g2564927 KEYWORDS . SOURCE Batrachospermum boryanum. ORGANISM Batrachospermum boryanum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum boryanum" /db_xref="taxon:67905" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 424 a 380 c 523 g 438 t BASE COUNT 424 a 380 c 523 g 438 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cu-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uuaauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc ca-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.helmin 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum helminthosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum helminthosum. ORGANISM Batrachospermum helminthosum. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026046 LOCUS AF026046 1766 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum helminthosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026046 NID g2564929 KEYWORDS . SOURCE Batrachospermum helminthosum. ORGANISM Batrachospermum helminthosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1766) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1766) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Batrachospermum helminthosum" /db_xref="taxon:67907" primer_bind 1..20 rRNA 1..1766 /product="18S rRNA" primer_bind complement(1739..1766) BASE COUNT 424 a 386 c 518 g 438 t BASE COUNT 424 a 386 c 518 g 438 t 1507 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaua---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.louisi 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum louisianae.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum louisianae. ORGANISM Batrachospermum louisianae. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026047 LOCUS AF026047 1835 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum louisianae 18S ribosomal RNA gene, complete sequence. ACCESSION AF026047 NID g2564930 KEYWORDS . SOURCE Batrachospermum louisianae. ORGANISM Batrachospermum louisianae Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1835 /organism="Batrachospermum louisianae" /db_xref="taxon:67908" primer_bind 1..20 rRNA 1..1835 /product="18S rRNA" primer_bind complement(1808..1835) BASE COUNT 342 a 316 c 384 g 328 t 465 others BASE COUNT 342 a 316 c 384 g 328 t 1903 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(N-NN 961 NNNN)NNN|N -NNNNN-NN- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN N|NNNNNN-N NNNN--NNNN NN|NNNNNNN 1081 NNNNNNNNNN N|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --caug---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -yaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU C)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cguug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -ccg----gc cg-cg----- aug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.macros 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum macrosporum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum macrosporum. ORGANISM Batrachospermum macrosporum. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026048 LOCUS AF026048 1770 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum macrosporum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026048 NID g2564931 KEYWORDS . SOURCE Batrachospermum macrosporum. ORGANISM Batrachospermum macrosporum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1770) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Batrachospermum macrosporum" /db_xref="taxon:67909" primer_bind 1..20 rRNA 1..1770 /product="18S rRNA" primer_bind complement(1743..1770) BASE COUNT 428 a 393 c 519 g 430 t BASE COUNT 428 a 393 c 519 g 430 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcaguu 181 au-aguuucu ucgaugu<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-AUCAU|G G-UUG-UGAC |AGGUGACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGC(-a uau)GCGUCU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUC| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUUUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|gggua-c c----(cgug u--------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cgcca- cg-a-ccg-g 3061 g-g------- ---------- ---------- --(uuuacu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-ca----- gug-gaaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.turfos 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum turfosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum turfosum. ORGANISM Batrachospermum turfosum. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026049 LOCUS AF026049 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum turfosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026049 NID g2564932 KEYWORDS . SOURCE Batrachospermum turfosum. ORGANISM Batrachospermum turfosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum turfosum" /db_xref="taxon:67910" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 423 a 383 c 520 g 439 t BASE COUNT 423 a 383 c 520 g 439 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u u--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGA-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uuaauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bat.virgat 3273 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum virgato-decaisneanum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum virgato-decaisneanum. ORGANISM Batrachospermum virgato-decaisneanum. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026050 LOCUS AF026050 1835 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum virgato-decaisneanum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026050 NID g2564933 KEYWORDS . SOURCE Batrachospermum virgato-decaisneanum. ORGANISM Batrachospermum virgato-decaisneanum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1835 /organism="Batrachospermum virgato-decaisneanum" /db_xref="taxon:67911" primer_bind 1..20 rRNA 1..1835 /product="18S rRNA" primer_bind complement(1808..1835) BASE COUNT 351 a 324 c 396 g 335 t 429 others BASE COUNT 351 a 324 c 396 g 335 t 1867 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u c--------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN N|NNNNNN-N NNNN--NNNN NN|NNNNNNN 1081 NNNNNNNNNN N|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --caug---- -------)-a ugac-ccgcc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(uuu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| --gc-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU C)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cguug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -ccg----gc cg-cg----- aug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Lem.fluvia 3273 bp RNA RNA 05-NOV-1997 DEFINITION Lemanea fluviatilis.. ACCESSION No information KEYWORDS No information. SOURCE Lemanea fluviatilis. ORGANISM Lemanea fluviatilis. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026051 LOCUS AF026051 1765 bp DNA PLN 05-NOV-1997 DEFINITION Lemanea fluviatilis 18S ribosomal RNA gene, complete sequence. ACCESSION AF026051 NID g2564934 KEYWORDS . SOURCE Lemanea fluviatilis. ORGANISM Lemanea fluviatilis Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Lemaneaceae; Lemanea. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Lemanea fluviatilis" /db_xref="taxon:67900" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 424 a 380 c 522 g 439 t BASE COUNT 424 a 380 c 522 g 439 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---ua-u--g acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uu--g 3061 g-gg------ ---------- ---------- --(uucau-- -)-------- ---------- 3121 ---------- ------u-cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Par.catena 3273 bp RNA RNA 05-NOV-1997 DEFINITION Paralemanea catenata.. ACCESSION No information KEYWORDS No information. SOURCE Paralemanea catenata. ORGANISM Paralemanea catenata. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026052 LOCUS AF026052 1765 bp DNA PLN 05-NOV-1997 DEFINITION Paralemanea catenata 18S ribosomal RNA gene, complete sequence. ACCESSION AF026052 NID g2564935 KEYWORDS . SOURCE Paralemanea catenata. ORGANISM Paralemanea catenata Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Lemaneaceae; Paralemanea. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Paralemanea catenata" /db_xref="taxon:67898" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 426 a 379 c 520 g 440 t BASE COUNT 426 a 379 c 520 g 440 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucggacg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| g-uc------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Psi.scopar 3273 bp RNA RNA 05-NOV-1997 DEFINITION Psilosiphon scoparium.. ACCESSION No information KEYWORDS No information. SOURCE Psilosiphon scoparium. ORGANISM Psilosiphon scoparium. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026041 LOCUS AF026041 1765 bp DNA PLN 05-NOV-1997 DEFINITION Psilosiphon scoparium 18S ribosomal RNA gene, complete sequence. ACCESSION AF026041 NID g2564924 KEYWORDS . SOURCE Psilosiphon scoparium. ORGANISM Psilosiphon scoparium Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Psilosiphonaceae; Psilosiphon. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Psilosiphon scoparium" /isolate="G0084" /db_xref="taxon:67903" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 421 a 392 c 518 g 434 t BASE COUNT 421 a 392 c 518 g 434 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UCAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uuug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-cu| g-uc------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------cccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuauccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Not.nodosu 3273 bp RNA RNA 24-JAN-191 DEFINITION Nothocladus nodosus. ACCESSION No information KEYWORDS No information. SOURCE Nothocladus nodosus. ORGANISM Nothocladus nodosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23815 LOCUS NNU23815 1765 bp DNA PLN 06-SEP-1995 DEFINITION Nothocladus nodosus 18S ribosomal RNA gene, complete sequence. ACCESSION U23815 KEYWORDS . SOURCE Nothocladus nodosus. ORGANISM Nothocladus nodosus Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Nothocladus. REFERENCE 1 (bases 1 to 1765) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975283 FEATURES Location/Qualifiers source 1..1765 /isolate="field sample, Armstrong Creek" /organism="Nothocladus nodosus" rRNA 1..1765 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1738..1765) /note="3' end PCR primer" BASE COUNT 428 a 385 c 516 g 436 t ORIGIN BASE COUNT 428 a 385 c 516 g 436 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- acu)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGG---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gau-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-agaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sir.huille 3273 bp RNA RNA 05-NOV-1997 DEFINITION Sirodotia huillensis.. ACCESSION No information KEYWORDS No information. SOURCE Sirodotia huillensis. ORGANISM Sirodotia huillensis. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026054 LOCUS AF026054 1765 bp DNA PLN 05-NOV-1997 DEFINITION Sirodotia huillensis 18S ribosomal RNA gene, complete sequence. ACCESSION AF026054 NID g2564937 KEYWORDS . SOURCE Sirodotia huillensis. ORGANISM Sirodotia huillensis Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Sirodotia. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Sirodotia huillensis" /db_xref="taxon:67913" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 426 a 382 c 520 g 437 t BASE COUNT 426 a 382 c 520 g 437 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sir.suecic 3273 bp RNA RNA 05-NOV-1997 DEFINITION Sirodotia suecica.. ACCESSION No information KEYWORDS No information. SOURCE Sirodotia suecica. ORGANISM Sirodotia suecica. REFERENCE 2 (bases 1 to 1771) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026053 LOCUS AF026053 1765 bp DNA PLN 05-NOV-1997 DEFINITION Sirodotia suecica 18S ribosomal RNA gene, complete sequence. ACCESSION AF026053 NID g2564936 KEYWORDS . SOURCE Sirodotia suecica. ORGANISM Sirodotia suecica Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Sirodotia. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Sirodotia suecica" /db_xref="taxon:67914" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 425 a 384 c 521 g 435 t BASE COUNT 425 a 384 c 521 g 435 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-cgcug- cg-a-ucg-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Tho.violac 3273 bp RNA RNA 05-NOV-1997 DEFINITION Thorea violacea.. ACCESSION No information KEYWORDS No information. SOURCE Thorea violacea. ORGANISM Thorea violacea. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026042 LOCUS AF026042 1916 bp DNA PLN 05-NOV-1997 DEFINITION Thorea violacea 18S ribosomal RNA gene, complete sequence. ACCESSION AF026042 NID g2564925 KEYWORDS . SOURCE Thorea violacea. ORGANISM Thorea violacea Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Thoreaceae; Thorea. REFERENCE 1 (bases 1 to 1916) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1916) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1916 /organism="Thorea violacea" /db_xref="taxon:67961" primer_bind 1..20 rRNA 1..1916 /product="18S rRNA" primer_bind complement(1889..1916) BASE COUNT 467 a 392 c 545 g 512 t BASE COUNT 467 a 392 c 545 g 512 t 1357 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugc<-- -uaacu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|guuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u ucu)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-a- gcau--(--- 1921 --uacg---- -------)-a ugac-ucguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|uguua-c aca--(uguu ---------- 2401 ---------- ---------- -----)-ugu g-ua-g-c-| u-ca-gaagc aauagagguu 2461 uuuucuuuu- cuuuuc-uuu ucuuucuuuu uuuc-cuuug a(gcaa)uug aag-ggggag 2521 agguuugaaa aaggaaugga acggagacuc cuuacucaug uuguuuugu| gc-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uuu------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-ugcug- cg-a-ucg-g 3061 a-gug----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cug----gc cg-cg----- gug-aaaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Tuo.americ 3273 bp RNA RNA 05-NOV-1997 DEFINITION Tuomeya americana.. ACCESSION No information KEYWORDS No information. SOURCE Tuomeya americana. ORGANISM Tuomeya americana. REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF026055 LOCUS AF026055 1765 bp DNA PLN 05-NOV-1997 DEFINITION Tuomeya americana 18S ribosomal RNA gene, complete sequence. ACCESSION AF026055 NID g2564938 KEYWORDS . SOURCE Tuomeya americana. ORGANISM Tuomeya americana Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Tuomeya. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Tuomeya americana" /db_xref="taxon:67916" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 422 a 383 c 522 g 438 t BASE COUNT 422 a 383 c 522 g 438 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaagu-a-a uu-------- 121 ---uu-a-cg acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggcg-g- gcau--(--- 1921 --uaug---- -------)-a ugac-ccguc cgggacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c c----(auu- ---------- 2401 ---------- ---------- -----)---g g-ua-g-c-| u-gu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-acuugg gac-ugcug- cg-a-uug-g 3061 g-g------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------cu -cug----gc cg-cg----- gug-ggaa|c uuguccaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Bonnem 3273 bp RNA RNA 24-JAN-191 DEFINITION Bonnemaisoniales. ACCESSION No information KEYWORDS No information. SOURCE Bonnemaisoniales. ORGANISM Bonnemaisoniales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Bon.hamife 3273 bp RNA RNA 24-JAN-191 DEFINITION Bonnemaisonia hamifera. ACCESSION No information KEYWORDS No information. SOURCE Bonnemaisonia hamifera. ORGANISM Bonnemaisonia hamifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26182 LOCUS BMNFRA 1764 bp ds-DNA PLN 30-JUN-1994 DEFINITION Bonnemaisonia hamifera DNA fragment. ACCESSION L26182 KEYWORDS PCR primer. SOURCE Bonnemaisonia hamifera DNA. ORGANISM Bonnemaisonia hamifera Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Bonnemaisoniales; Bonnemaisoniaceae. REFERENCE 1 (bases 1 to 1764) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507222 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1738..1764 /standard_name="PCR primer" /note="putative" source 1..1764 /organism="Bonnemaisonia hamifera" /sequenced_mol="DNA" BASE COUNT 422 a 378 c 528 g 436 t ORIGIN BASE COUNT 422 a 378 c 528 g 436 t 1509 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-a cu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucgaugg<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu ccga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- CAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGCUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-g- ggcug-(--- 1921 --uuuu---- -------)-- uggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gguua-c cg---(auuu c--------- 2401 ---------- ---------- -----)--ug g-ua-g-cc| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gggc(--gaa a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-c-aga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----ug uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Cerami 3273 bp RNA RNA 24-JAN-191 DEFINITION Ceramiales. ACCESSION No information KEYWORDS No information. SOURCE Ceramiales. ORGANISM Ceramiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......-... -......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Len.muelle 3273 bp RNA RNA 22-DEC-1999 DEFINITION Lenormandia muelleri.. ACCESSION No information KEYWORDS No information. SOURCE Lenormandia muelleri. ORGANISM Lenormandia muelleri. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Ceramiales),with delineation of the little-known tribe JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203897 LOCUS AF203897 1767 bp DNA PLN 22-DEC-1999 DEFINITION Lenormandia muelleri small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203897 NID g6625804 VERSION AF203897.1 GI:6625804 KEYWORDS . SOURCE Lenormandia muelleri. ORGANISM Lenormandia muelleri Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Lenormandia. REFERENCE 1 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1767 /organism="Lenormandia muelleri" /strain="GWS000164" /db_xref="taxon:110478" rRNA 1..1767 /product="small subunit ribosomal RNA" BASE COUNT 453 a 360 c 491 g 463 t 1506 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgggg-<-- --guaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- gau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACA)CCU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggaag-u- augc--(--- 1921 --uuau---- -------)-g g--u-acuuu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-aggg-ca --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -cag-uuu-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ug-cu-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GCCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU C)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-ggcug- gg-u-gga-u 3061 u-gug----- ---------- ---------- --(cuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ua cu-cg----- gcc-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Mic.strobi 3273 bp RNA RNA 22-DEC-1999 DEFINITION Micropeuce strobiliferum.. ACCESSION No information KEYWORDS No information. SOURCE Micropeuce strobiliferum. ORGANISM Micropeuce strobiliferum. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203896 LOCUS AF203896 1768 bp DNA PLN 22-DEC-1999 DEFINITION Micropeuce strobiliferum small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203896 NID g6625803 VERSION AF203896.1 GI:6625803 KEYWORDS . SOURCE Micropeuce strobiliferum. ORGANISM Micropeuce strobiliferum Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Micropeuce. REFERENCE 1 (bases 1 to 1768) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1768) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Micropeuce strobiliferum" /strain="MELU K10654" /db_xref="taxon:110471" rRNA 1..1768 /product="small subunit ribosomal RNA" BASE COUNT 459 a 348 c 484 g 477 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGUUCGG UAAAAcagca 181 au-aauuuuu ucgggg-<-- --guaa-ua- c-u>ACUUGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uu-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGGGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-U UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 UUCAAUA-GG GG-GACC(-- aac)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACA)CCU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- uuggaca-u- ggcc--(--- 1921 --uaau---- -------)-g g--c-auguu cagcaccuu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-aggg-ua --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -caa-uuu-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ug-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a cccaaucuc- -gaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU C)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-agcua- aa-u-gga-u 3061 u-gug----- ---------- ---------- --(auu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ua uu-ug----- gcu-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Len.prolif 3273 bp RNA RNA 22-DEC-1999 DEFINITION Lenormandia prolifera.. ACCESSION No information KEYWORDS No information. SOURCE Lenormandia prolifera. ORGANISM Lenormandia prolifera. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203895 LOCUS AF203895 1766 bp DNA PLN 22-DEC-1999 DEFINITION Lenormandia prolifera small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203895 NID g6625802 VERSION AF203895.1 GI:6625802 KEYWORDS . SOURCE Lenormandia prolifera. ORGANISM Lenormandia prolifera Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Lenormandia. REFERENCE 1 (bases 1 to 1766) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1766) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Lenormandia prolifera" /strain="MELU K10608" /db_xref="taxon:110466" rRNA 1..1766 /product="small subunit ribosomal RNA" BASE COUNT 455 a 358 c 487 g 465 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG NGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgggg-<-- --guaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- gau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACA)CCU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG C-AA|G-GAU GUUUUCAUUG 1801 AU|CG-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUACU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggaag-u- augc--(--- 1921 --uuau---- -------)-g g--u-acuuu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- uguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-aggg-ua --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -cag-uuu-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ug-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aguggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |---aggg-a 2821 gugc(--gaa a-)gcaug-a cccaauccc- -caaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU C)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-ggcug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ua cu-cg----- gcc-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Lau.filifo 3273 bp RNA RNA 22-DEC-1999 DEFINITION Laurencia filiformis.. ACCESSION No information KEYWORDS No information. SOURCE Laurencia filiformis. ORGANISM Laurencia filiformis. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203894 LOCUS AF203894 1766 bp DNA PLN 22-DEC-1999 DEFINITION Laurencia filiformis small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203894 NID g6625801 VERSION AF203894.1 GI:6625801 KEYWORDS . SOURCE Laurencia filiformis. ORGANISM Laurencia filiformis Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Laurencia. REFERENCE 1 (bases 1 to 1766) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1766) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Laurencia filiformis" /strain="MELU K10609" /db_xref="taxon:110462" rRNA 1..1766 /product="small subunit ribosomal RNA" BASE COUNT 464 a 354 c 474 g 468 t 1513 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuuau ucgggg-<-- --guaa-uug c-u>ACUUGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga au-aa|auuu cuga|CCUAU 601 CAACUU-C-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-AG GG-GACC(-- gau)GGUCUU -C-UU-AAUU GGAAUGAAA| ACAAU(C-UA 961 AACA)CCU|U -AUUAA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UU-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAUGAC |UA|-agga- ucagccg-u- ggcc--(--- 1921 --uauu---- -------)-g g--u-acggu uggcacuuu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugAUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA cu-aggg-ca --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -cau------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| cg-uc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GCCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a cccaaucuc- -aaaa]---- ---------- ------uccg 2881 uuc-gUGAUG GGGAUAGAAG CU(UGCAAUU A)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAU)CU CACGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-agccg- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----cg uu-ug----- gcu-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGNNNN- NNGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bos.moritz 3273 bp RNA RNA 22-DEC-1999 DEFINITION Bostrychia moritziana.. ACCESSION No information KEYWORDS No information. SOURCE Bostrychia moritziana. ORGANISM Bostrychia moritziana. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203893 LOCUS AF203893 1793 bp DNA PLN 22-DEC-1999 DEFINITION Bostrychia moritziana small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203893 NID g6625800 VERSION AF203893.1 GI:6625800 KEYWORDS . SOURCE Bostrychia moritziana. ORGANISM Bostrychia moritziana Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Bostrychia. REFERENCE 1 (bases 1 to 1793) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1793) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1793 /organism="Bostrychia moritziana" /strain="JAW 2748" /db_xref="taxon:103713" rRNA 1..1793 /product="small subunit ribosomal RNA" BASE COUNT 477 a 355 c 482 g 479 t 1480 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCCUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ua acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagua 181 aa-aauuuuu ucggag-<-- --aaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcuccga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGG)-C UU-ACCAU|A G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GACC(-- aau)GGUCUC -U-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACU)CCU|U -AUUGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UU-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(CGAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-GUAAA CUAUGAGGCC |UG|-ggga- ucgggcg-u- ggcc--(--- 1921 --uauu---- -------)-g g--u-acguu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 CU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- agcaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-agaa-aa --|ugcua-u -----(uaaa cu-------- 2401 ---------- ---------- -----)---g c-gg-u-ag| -cau-cgaaa auu------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ua-au-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----GUAUA- 2641 )GUCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AAUGGC---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a cccaaucuc- -uaaa]---- ---------- ------ucca 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU A)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcug- gg-c-gaa-u 3061 uagug----- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- -----ca-cg -aau----uu cc-ug----- guu-uaaa|c uuggucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Het.umbell 3273 bp RNA RNA 22-DEC-1999 DEFINITION Heterocladia umbellata.. ACCESSION No information KEYWORDS No information. SOURCE Heterocladia umbellata. ORGANISM Heterocladia umbellata. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203892 LOCUS AF203892 1767 bp DNA PLN 22-DEC-1999 DEFINITION Heterocladia umbellata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203892 NID g6625799 VERSION AF203892.1 GI:6625799 KEYWORDS . SOURCE Heterocladia umbellata. ORGANISM Heterocladia umbellata Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Heterocladia. REFERENCE 1 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1767 /organism="Heterocladia umbellata" /strain="MELU K10586" /db_xref="taxon:110461" rRNA 1..1767 /product="small subunit ribosomal RNA" BASE COUNT 470 a 357 c 477 g 463 t 1506 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u gu-------- 121 ---au-a-ua acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 aa-aauuucu ucgggg-<-- --guaa-ua- c-u>AC-CGG -AUAACCGUA G(U-AAAG)A 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GAGAGCC(UG AG-AAAC)GG CUAUCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GACC(-- aau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-CA 961 AACA)AAU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -UCG--UU-A GA-G(GU-GA AA---)UUCU -UAGA-U-CG 1741 U-UGG-AAA- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggacg-u- ggca--(--- 1921 --uuuuu--- -------)-g g--u-acguu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGAC [cag-acau- uguaaggauu gac-aga(cu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGAUAA au-aaag-cu --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -cag-cu--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ag-cu-uuUC 2581 UUAUACG]-- -|-------- -----GACAG UAG-GC(--- ---------- ----UUUUA- 2641 )GCCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggg-a 2821 gugc(--gag a-)gccca-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAA CU(UGCAAUU A)UCUU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GAG( UCAUCAU)CU CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-aucug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(ucuu--- -)-------- ---------- 3121 ---------- -----ca-cg -aac----ug uu-cg----- ggu-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Het.caudat 3273 bp RNA RNA 22-DEC-1999 DEFINITION Heterocladia caudata.. ACCESSION No information KEYWORDS No information. SOURCE Heterocladia caudata. ORGANISM Heterocladia caudata. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203891 LOCUS AF203891 1767 bp DNA PLN 22-DEC-1999 DEFINITION Heterocladia caudata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203891 NID g6625798 VERSION AF203891.1 GI:6625798 KEYWORDS . SOURCE Heterocladia caudata. ORGANISM Heterocladia caudata Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Heterocladia. REFERENCE 1 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1767 /organism="Heterocladia caudata" /strain="G0378" /db_xref="taxon:110460" rRNA 1..1767 /product="small subunit ribosomal RNA" BASE COUNT 469 a 357 c 479 g 462 t 1506 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u gu-------- 121 ---au-a-ua acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 aa-aauuucu ucgggg-<-- --guaa-ua- c-u>AC-CGG -AUAACCGUA G(U-AAAG)A 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GAGAGCC(UG AG-AAAC)GG CUAUCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GACC(-- aau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-CA 961 AACA)AAU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UU-A GA-G(GU-GA AA---)UUCU -UAGA-U-CG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggacg-u- ggca--(--- 1921 --uuuuu--- -------)-g g--u-acguu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGAC [cag-acau- uguaaggauu gac-aga(cu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGAUAA au-aaag-cu --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -cag-cu--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ag-cu-uuUC 2581 UUAUACG]-- -|-------- -----GACAG UAG-GC(--- ---------- ----UUUUA- 2641 )GCCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggg-a 2821 gugc(--gag a-)gccca-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAA CU(UGCAAUU A)UCUU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GAG( UCAUCAU)CU CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-aucug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(ucuu--- -)-------- ---------- 3121 ---------- -----ca-cg -aac----ug uu-cg----- ggu-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Het.austra 3273 bp RNA RNA 22-DEC-1999 DEFINITION Heterocladia australis.. ACCESSION No information KEYWORDS No information. SOURCE Heterocladia australis. ORGANISM Heterocladia australis. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203890 LOCUS AF203890 1767 bp DNA PLN 22-DEC-1999 DEFINITION Heterocladia australis small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203890 NID g6625797 VERSION AF203890.1 GI:6625797 KEYWORDS . SOURCE Heterocladia australis. ORGANISM Heterocladia australis Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Heterocladia. REFERENCE 1 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1767) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1767 /organism="Heterocladia australis" /strain="G0388" /db_xref="taxon:110459" rRNA 1..1767 /product="small subunit ribosomal RNA" BASE COUNT 469 a 357 c 479 g 462 t 1506 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u gu-------- 121 ---au-a-ua acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 aa-aauuucu ucgggg-<-- --guaa-ua- c-u>AC-CGG -AUAACCGUA G(U-AAAG)A 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GAGAGCC(UG AG-AAAC)GG CUAUCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GACC(-- aau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-CA 961 AACA)AAU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UU-A GA-G(GU-GA AA---)UUCU -UAGA-U-CG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggacg-u- ggca--(--- 1921 --uuuuu--- -------)-g g--u-acguu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGAC [cag-acau- uguaaggauu gac-aga(cu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGAUAA au-aaag-cu --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -cag-cu--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ag-cu-uuUC 2581 UUAUACG]-- -|-------- -----GACAG UAG-GC(--- ---------- ----UUUUA- 2641 )GCCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggg-a 2821 gugc(--gag a-)gccca-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAA CU(UGCAAUU A)UCUU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GAG( UCAUCAU)CU CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-aucug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(ucuu--- -)-------- ---------- 3121 ---------- -----ca-cg -aac----ug uu-cg----- ggu-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Mel.mamill 3273 bp RNA RNA 22-DEC-1999 DEFINITION Melanamansia mamillaris.. ACCESSION No information KEYWORDS No information. SOURCE Melanamansia mamillaris. ORGANISM Melanamansia mamillaris. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203889 LOCUS AF203889 1769 bp DNA PLN 22-DEC-1999 DEFINITION Melanamansia mamillaris small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203889 NID g6625796 VERSION AF203889.1 GI:6625796 KEYWORDS . SOURCE Melanamansia mamillaris. ORGANISM Melanamansia mamillaris Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Melanamansia. REFERENCE 1 (bases 1 to 1769) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Melanamansia mamillaris" /strain="G0389" /db_xref="taxon:110469" rRNA 1..1769 /product="small subunit ribosomal RNA" BASE COUNT 455 a 357 c 486 g 471 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgggg-<-- --guaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- gau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACA)CCU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggaug-u- auac--(--- 1921 --uuau---- -------)-g g--u-acuuu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-aggg-ua --|uguua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -cag-uuu-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ug-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUAUGUA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU C)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-ggcug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(-cuu--- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ug uu-cg----- gcc-ugaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Son.linear 3273 bp RNA RNA 22-DEC-1999 DEFINITION Sonderella linearis.. ACCESSION No information KEYWORDS No information. SOURCE Sonderella linearis. ORGANISM Sonderella linearis. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203888 LOCUS AF203888 1785 bp DNA PLN 22-DEC-1999 DEFINITION Sonderella linearis small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203888 NID g6625795 VERSION AF203888.1 GI:6625795 KEYWORDS . SOURCE Sonderella linearis. ORGANISM Sonderella linearis Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Sonderella. REFERENCE 1 (bases 1 to 1785) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1785) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1785 /organism="Sonderella linearis" /strain="GWS000172" /db_xref="taxon:110477" rRNA 1..1785 /product="small subunit ribosomal RNA" BASE COUNT 491 a 344 c 464 g 486 t 1488 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|CCCAG UGGU-A-UAU GCUUGUCACA AA|GAUUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augaaugu-c uu-------- 121 ---aa-a-aa auga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuugu uuggga-<-- --auaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)A 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agcccaa ac-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGGGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA AGGAGCC(UG AG-AGAC)GG CUACUACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCA- AAUCCG-A(- aau)UCGGG- 781 A-GGU|A|-G UGACAUGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GAUC(-- aau)GAUCUC -C-CU-AAUU GGAAUGAAA| ACAAU(U-UA 961 AAAC)UCU|U -AUUGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UAUCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UU-A GA-G(GU-GA AA---)UUCU -UAGA-U-CG 1741 U-UGG-AAG- A-CAC-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGCC |UG|-ggga- ucagacg-u- gucc--(--- 1921 --uaauuuau u------)-a g--c-acguu uggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- agugaggauu gac-aga(cu -gagag-c)u 2161 cuuucuugau uuuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAUUAA au-agaa-aa --|uguua-u -----(acau uuu------- 2401 ---------- ---------- -----)---a g-uc-u-ag| -caa-auu-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| au-uu-cuUC 2581 UUAAACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUAGU---- ---------- ----(----) [uc-aaugag 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 guac(--gaa a-)guaug-a ccuaauccc- -gaaa]---- ---------- ------ucug 2881 cuc-gUGCUG GGGAUAGAAG CU(UGCAAUU C)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-aguuu- ga-u-aga-u 3061 u-gug----- ---------- ---------- --(auucu-- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ua uu-ug----- gcu-caaa|c uuagucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Mur.pericl 3273 bp RNA RNA 22-DEC-1999 DEFINITION Murrayella periclados.. ACCESSION No information KEYWORDS No information. SOURCE Murrayella periclados. ORGANISM Murrayella periclados. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203887 LOCUS AF203887 1777 bp DNA PLN 22-DEC-1999 DEFINITION Murrayella periclados small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203887 NID g6625794 VERSION AF203887.1 GI:6625794 KEYWORDS . SOURCE Murrayella periclados. ORGANISM Murrayella periclados Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Murrayella. REFERENCE 1 (bases 1 to 1777) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1777) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1777 /organism="Murrayella periclados" /strain="G0311(JAW2887)" /db_xref="taxon:110473" rRNA 1..1777 /product="small subunit ribosomal RNA" BASE COUNT 455 a 358 c 492 g 472 t 1496 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ augaguga-- uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucaggg-<-- --auaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)A 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcccuga uc-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- auu)UCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- guu)GGUCUU -U-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACA)CCU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACC-GUAAA CUAUGAGACC |UG|-ggga- ucgggug-u- ggcc--(--- 1921 --uaua---- -------)-g g--u-acacu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGGC [cgg-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-aggg-cu --|aguua-u -----(ccuu ---------- 2401 ---------- ---------- -----)---g u-ga-u-ag| -cau-ua--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ug-cu-cuUC 2581 UUAGUCG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a ccuaaucuc- -gaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUUGAAG CU(UGCAAUU C)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-agccg- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(uuuuuuu -)-------- ---------- 3121 ---------- -----ca-ca -aac----ug uc-ug----- gcu-ucaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Pol.lanosa 3273 bp RNA RNA 22-DEC-1999 DEFINITION Polysiphonia lanosa.. ACCESSION No information KEYWORDS No information. SOURCE Polysiphonia lanosa. ORGANISM Polysiphonia lanosa. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203886 LOCUS AF203886 1778 bp DNA PLN 22-DEC-1999 DEFINITION Polysiphonia lanosa small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203886 NID g6625793 VERSION AF203886.1 GI:6625793 KEYWORDS . SOURCE Polysiphonia lanosa. ORGANISM Polysiphonia lanosa Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Polysiphonia. REFERENCE 1 (bases 1 to 1778) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1778) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1778 /organism="Polysiphonia lanosa" /strain="CH045" /db_xref="taxon:110463" rRNA 1..1778 /product="small subunit ribosomal RNA" BASE COUNT 462 a 358 c 479 g 479 t 1495 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGUU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CCGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgagg-<-- --auaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUU---- ----(----) ---------- -------(-- --)--|---- 301 ---gccucga uu-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGGGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- aau)GGUCUU -U-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACA)CCU|U -AAUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGUcC- 1681 GGGGGCAUU| UGU-AUUUCA -GGG--UU-A GA-G(GU-GA AA---)UUCU -UGGA-U-CC 1741 U-UGA-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACC-AUAAA CAAUGAGAUC |UG|-agga- ucggccg-a- ggcc--(--- 1921 --uuauu--- -------)-g g--u-ucggu cggcacucu- -ccGG(-GAA A)CCA--AAG 1981 AG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-aggg-uu --|cauua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -ugg-uuc-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| aa-cu-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uaa------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaua-a ccuaaucuc- -gaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU A)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGUUCCggug agg-cuuugg gag-aucug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(cuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ug uu-cg----- guu-caaa|c uuagucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Neo.savati 3273 bp RNA RNA 22-DEC-1999 DEFINITION Neosiphonia savatieri.. ACCESSION No information KEYWORDS No information. SOURCE Neosiphonia savatieri. ORGANISM Neosiphonia savatieri. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203885 LOCUS AF203885 1777 bp DNA PLN 22-DEC-1999 DEFINITION Neosiphonia savatieri small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203885 NID g6625792 VERSION AF203885.1 GI:6625792 KEYWORDS . SOURCE Neosiphonia savatieri. ORGANISM Neosiphonia savatieri Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Neosiphonia. REFERENCE 1 (bases 1 to 1777) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1777) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1777 /organism="Neosiphonia savatieri" /db_xref="taxon:110920" rRNA 1..1777 /product="small subunit ribosomal RNA" BASE COUNT 459 a 356 c 483 g 479 t 1496 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagug--u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgagg-<-- --auaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUU---- ----(----) ---------- -------(-- --)--|---- 301 ---gccucga uu-aa|auuu cuga|CCUAU 601 CAACUau--G AUGGUAAG-( GUAGGGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- aau)GGUCUU -C-CU-AAUU GGAAUGAGU| ACAAU(G-UA 961 AACA)CCU|U -AACGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GGG--UU-A GA-G(GU-GA AA---)UUCU -UGGA-U-CC 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGUGAUC |UG|-ggga- uuagccg-a- ggcc--(--- 1921 --uauuu--- -------)-g g--u-ucggu uagcacccu- -ccGG(-GAA A)CCA--AAG 1981 AU-uuugCAU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA au-aggg-uu --|cauua-u -----(ucuu ---------- 2401 ---------- ---------- -----)---g u-aa-u-ag| -ugg-uuu-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| aa-cu-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uaa------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a ccuaaucuc- -gaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU A)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAU)CU CACGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGUUCCggug agg-cuucgg gag-aacug- gg-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ug cu-cg----- guu-ugaa|c uuagucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Pti.serrat 3273 bp RNA RNA 22-DEC-1999 DEFINITION Ptilota serrata.. ACCESSION No information KEYWORDS No information. SOURCE Ptilota serrata. ORGANISM Ptilota serrata. REFERENCE 2 (bases 1 to 1771) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE algal genera Heterocladia and Trigenea (Rhodomelaceae, JOURNAL J. Phycol. (2000) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF203884 LOCUS AF203884 1768 bp DNA PLN 22-DEC-1999 DEFINITION Ptilota serrata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF203884 NID g6625791 VERSION AF203884.1 GI:6625791 KEYWORDS . SOURCE Ptilota serrata. ORGANISM Ptilota serrata Eukaryota; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Ptilota. REFERENCE 1 (bases 1 to 1768) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE The morphology, taxonomy and molecular phylogeny of the red algal genera Heterocladia and Trigenea (Rhodomelaceae, Ceramiales),with delineation of the little-known tribe Heterocladieae JOURNAL J. Phycol. (2000) In press REFERENCE 2 (bases 1 to 1768) AUTHORS Phillips,L.E., Choi,H.-G., Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (10-NOV-1999) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Ptilota serrata" /strain="G0349" /db_xref="taxon:110475" rRNA 1..1768 /product="small subunit ribosomal RNA" BASE COUNT 432 a 378 c 519 g 439 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgggg-<-- --guaa-ua- c-u>AC-CGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-A(- auu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GCCC(-- gau)GGGCUU -C-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACG)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGA-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-u- ggca--(--- 1921 --acug---- -------)-u g--u-augcu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAUC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG au-aggu-gc --|cacua-c -----(cgcu u--------- 2401 ---------- ---------- -----)---u u-gg-u-ag| -ugc-gg--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ug-ac-cuUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 augc(--gaa a-)guacu-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcca- gg-c-gga-c 3061 u-gug----- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg cu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Ano.furcel 3273 bp RNA RNA 24-JAN-191 DEFINITION Anotrichium furcellatum. ACCESSION No information KEYWORDS No information. SOURCE Anotrichium furcellatum. ORGANISM Anotrichium furcellatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U32561 LOCUS AFU32561 1772 bp DNA PLN 17-AUG-1995 DEFINITION Anotrichium furcellatum small-subunit ribosomal RNA, partial sequence. ACCESSION U32561 KEYWORDS . SOURCE Anotrichium furcellatum. ORGANISM Anotrichium furcellatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Anotrichium. REFERENCE 1 (bases 1 to 1772) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945167 FEATURES Location/Qualifiers source 1..1772 /organism="Anotrichium furcellatum" /isolate="2600A3" primer_bind 1..20 /note="5' PCR primer" rRNA <1..>1772 /product="small-subunit ribosomal RNA" primer_bind complement(1745..1772) /note="3' PCR primer" BASE COUNT 447 a 373 c 493 g 459 t ORIGIN BASE COUNT 447 a 373 c 493 g 459 t 1501 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCU AG|GACUAAG 61 CCAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ auaaguga-c uu-------- 121 ---au-a-ua acaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgggg-<-- --auaa-ua- c-u>ACUCGG -AUAUCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccgu uc-aa|auuu cuga|CCUAU 601 CAACUUCG-G ACGGUAGG-( GUAGUGU)-C CU-ACCGU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GCCC(-- aac)GGGCUU -C-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACG)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UA|-ggga- ucgggcg-uu g-cu--(--- 1921 --uauaau-- -------)-u g--c-acgcu cggcaccuu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [agg-acau- cauaaggauu aac-aga(uu -gagag-c)u 2161 cuuuuuugau uugauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGAGCUAA UU-Acac-ga --|ccuug-a -----(uuuu ---------- 2401 ---------- ---------- -----)---- u-ca-a-gu| a-ac-aac-- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| -u-gu-gcAA 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 augc(--gag a-)gcacu-a ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUUGAGG CU(UGCAAUU C)UCCC-UCC UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuuug gag-ggcua- gu-u-gaa-c 3061 u-gu------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gau----uu uc-ug----- gcc-caaa|a uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cer.macile 3273 bp RNA RNA 24-JAN-191 DEFINITION Ceramium macilentum. ACCESSION No information KEYWORDS No information. SOURCE Ceramium macilentum. ORGANISM Ceramium macilentum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U32562 LOCUS CMU32562 1772 bp DNA PLN 17-AUG-1995 DEFINITION Ceramium macilentum small-subunit ribosomal RNA, partial sequence. ACCESSION U32562 KEYWORDS . SOURCE Ceramium macilentum. ORGANISM Ceramium macilentum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Ceramium. REFERENCE 1 (bases 1 to 1772) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945169 FEATURES Location/Qualifiers source 1..1772 /organism="Ceramium macilentum" /isolate="G0285" primer_bind 1..20 /note="5' PCR primer" rRNA <1..>1772 /product="small-subunit ribosomal RNA" primer_bind complement(1745..1772) /note="3' PCR primer" BASE COUNT 436 a 375 c 510 g 451 t ORIGIN BASE COUNT 436 a 375 c 510 g 451 t 1501 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgguga<-- --uaac-ua- c-u>ACUCGG -AUACCCGUA G(U-AAAA)U 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)UCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -ACG--UU-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACC-AUAAA CUAUGAGAAC |UG|-aguu- ugggacg-u- ggcu--(--- 1921 --auuu---- -------)-g g--u-acguu ccgcacucu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(cu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CUUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uauua-c c----(auuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-ca| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| -a-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gua a-)guguu-u ccuaaucuc- -gaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAACU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUUAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- gu-c-gga-c 3061 u-gu------ ---------- ---------- --(guuu--- -)-------- ---------- 3121 ---------- -----ca-ca -gacc---gg cg-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cer.rubrum 3273 bp RNA RNA 24-JAN-191 DEFINITION Ceramium rubrum. ACCESSION No information KEYWORDS No information. SOURCE Ceramium rubrum. ORGANISM Ceramium rubrum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26183 LOCUS CMQFRA 1778 bp ds-DNA PLN 30-JUN-1994 DEFINITION Ceramium rubrum DNA fragment. ACCESSION L26183 KEYWORDS PCR amplified. SOURCE Ceramium rubrum DNA. ORGANISM Ceramium rubrum Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Ceramiales; Ceramiaceae. REFERENCE 1 (bases 1 to 1778) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507225 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1752..1778 /standard_name="PCR primer" /note="putative" source 1..1778 /organism="Ceramium rubrum" /sequenced_mol="DNA" BASE COUNT 429 a 377 c 513 g 459 t BASE COUNT 429 a 377 c 513 g 459 t 1495 others ORIGIN 1 |~~~~~CACC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- -uaaac-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAAA UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)UCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACC-AUAAA CUAUGAGGAC |UG|-ggga- ucgggcg-u- ggcu--(--- 1921 --auuu---- -------)-g g--u-acgcu cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CUUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(auuu c-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a----g---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gcggC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUAGAGG CU(UGCAACU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-gucug- ca-u-guc-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-c- -uug----ug ug-ca----- ggu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Cro.attenu 3273 bp RNA RNA 24-JAN-191 DEFINITION Crouania attenuata. ACCESSION No information KEYWORDS No information. SOURCE Crouania attenuata. ORGANISM Crouania attenuata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U32563 LOCUS CAU32563 1774 bp DNA PLN 17-AUG-1995 DEFINITION Crouania attenuata small-subunit ribosomal RNA, partial sequence. ACCESSION U32563 KEYWORDS . SOURCE Crouania attenuata. ORGANISM Crouania attenuata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Crouania. REFERENCE 1 (bases 1 to 1774) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1774) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945168 FEATURES Location/Qualifiers source 1..1774 /organism="Crouania attenuata" /isolate="G0284" primer_bind 1..20 /note="5' PCR primer" rRNA <1..>1774 /product="small-subunit ribosomal RNA" primer_bind complement(1747..1774) /note="3' PCR primer" BASE COUNT 443 a 375 c 505 g 451 t ORIGIN BASE COUNT 443 a 375 c 505 g 451 t 1499 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ acgagug--u ac-------- 121 ---au-a-ua acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aguuucu ucggcgg<-- ---uaa-ua- c-u>ACUCGG AAUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acgccga uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GCCC(-- aau)GGGCUU -C-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUUCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGA-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACC-AUAAA CGAUGAUGAC |UA|-gaga- ucggccg-u- ggcc--(--- 1921 --uauuu--- -------)-g g--u-acggu cggcaucuu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugAUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- ugugaggauu guc-aga(uu -gagag-c)u 2161 cuuacuugau ucaauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cauua-c c----(uuuu u--------- 2401 ---------- ---------- -----)---g g-ua-a-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| -g-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUCGAGG GU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-gaaca- ga-a-aac-u 3061 u-gc------ ---------- ---------- --(guau--- -)-------- ---------- 3121 ---------- ------g-ca -agc----uu ug-ug----- guc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Dev.rament 3273 bp RNA RNA 24-JAN-191 DEFINITION Devaleraea ramentacea subsp. Devaleraea ramentacea. ACCESSION No information KEYWORDS No information. SOURCE Devaleraea ramentacea subsp. Devaleraea ramentacea. ORGANISM Devaleraea ramentacea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26186 LOCUS DEVFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Devaleraea ramentacea DNA fragment. ACCESSION L26186 KEYWORDS PCR amplified. SOURCE Devaleraea ramentacea DNA. ORGANISM Devaleraea ramentacea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Palmariales; Palmariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507229 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1771 /note="putative" source 1..1771 /organism="Devaleraea ramentacea" /sequenced_mol="DNA" BASE COUNT 430 a 387 c 515 g 439 t BASE COUNT 430 a 387 c 515 g 439 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) CCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GC|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GAUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-ggga- ucgggca-g- gcau--(--- 1921 --uacgau-- -------)-g a--c-cuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acac(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg acu-gccg-- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAAU~~~ ~~~~~~~~|| ||| // LOCUS Das.baillo 3273 bp RNA RNA 24-JAN-191 DEFINITION Dasya baillouviana. ACCESSION No information KEYWORDS No information. SOURCE Dasya baillouviana. ORGANISM Dasya baillouviana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26185 LOCUS DSYFRA 1770 bp ds-DNA PLN 30-JUN-1994 DEFINITION Dasya baillouviana DNA fragment. ACCESSION L26185 KEYWORDS PCR amplified. SOURCE Dasya baillouviana DNA. ORGANISM Dasya baillouviana Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Ceramiales; Dasyaceae. REFERENCE 1 (bases 1 to 1770) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507237 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" source 1..1770 /organism="Dasya baillouviana" /sequenced_mol="DNA" BASE COUNT 454 a 370 c 502 g 444 t BASE COUNT 454 a 370 c 502 g 444 t 1503 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GC-CGGU|-- -----|---- ---(----)[ augaguga-a ac-------- 121 ---ga-a-ua acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggggg<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccgu uc-aa|auuu cuga|CCUAU 601 CAACUAU--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GCCC(-- gau)GGGCUC -U-CU-AAUU GGAAUGAGA| ACAAC(G-UA 961 AACA)ACU|U -AUCGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggacg-u- ggca--(--- 1921 --auaau--- -------)-g g--u-acguu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuuggu uuuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c cg---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ca-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CAG-GC(--- ---------- ----GUCUA- 2641 )GUCUGUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGA---- ---------- ----(----) [uc-agcggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 guac(--gag a-)guacg-a cccaaucuc- -gaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCC UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUUAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcaa- aa-u-gga-c 3061 u-gu------ ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- ------a-ca -gac----ug uu-ug----- gcu-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gri.globif 3273 bp RNA RNA 24-JAN-191 DEFINITION Griffithsia globulifera. ACCESSION No information KEYWORDS No information. SOURCE Griffithsia globulifera. ORGANISM Griffithsia globulifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26192 GRIFFITHSIA GLOBIFERA, red algae sequence from M.Ragan. LOCUS GFFFRA 1768 bp ds-DNA PLN 30-JUN-1994 DEFINITION Griffithsia globulifera DNA fragment. ACCESSION L26192 KEYWORDS PCR amplified. SOURCE Griffithsia globulifera DNA. ORGANISM Griffithsia globulifera Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Ceramiales; Ceramiaceae. REFERENCE 1 (bases 1 to 1768) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507244 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1743..1768 /standard_name="PCR primer" /note="putative" source 1..1768 /organism="Griffithsia globulifera" /sequenced_mol="DNA" BASE COUNT 427 a 376 c 519 g 446 t BASE COUNT 427 a 376 c 519 g 446 t 1505 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcg-gc g-cug-(--- 1921 --cuuua--- -------)ug g--c-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGuGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGAGA 3241 AGGAUCAG-- ---AA~~~~~ ~~~~~~~~|| ||| // LOCUS Gri.monili 3273 bp RNA RNA 24-JAN-191 DEFINITION Griffithsia monilis. ACCESSION No information KEYWORDS No information. SOURCE Griffithsia monilis. ORGANISM Griffithsia monilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U32565 LOCUS GMU32565 1769 bp DNA PLN 17-AUG-1995 DEFINITION Griffithsia monilis small-subunit ribosomal RNA, partial sequence. ACCESSION U32565 KEYWORDS . SOURCE Griffithsia monilis. ORGANISM Griffithsia monilis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Griffithsia. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945170 FEATURES Location/Qualifiers source 1..1769 /organism="Griffithsia monilis" /isolate="G0251" rRNA <1..>1769 /product="small-subunit ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 451 a 367 c 490 g 461 t ORIGIN BASE COUNT 451 a 367 c 490 g 461 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ auaaguga-g uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucgggga<-- --uuua-ua- c-u>AC-CGG -AUAUCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUA---- ----(----) ---------- -------(-- --)--|---- 301 --<-cgcaa- a---cac-gg ga----(--- ---------- ---------- ---------u 361 uuu------- ---------- ---------- -----)---- --ucuc-gug --|GUACUUA 421 UUAUC--GAU A-CAA-gcca a--------- ---------- ----(---cu ugu)------ 481 ---------- ---------u ugg-UGAUUC UAA-AUAA-U UUUUC----| GGAUC-GA-- 541 ----a--(-- uuua----)- -u----UCGA C>-gccccgu uc-aa|auuu cuga|CCUAU 601 CAACUUCG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GCCC(-- aau)GGGCUU -C-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACG)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--CC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UA|-ggga- ucgggcg-ua uu----(--- 1921 --cuuuug-- -------)-u u--a-acgcu cggcaccuu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- caguaggauu aac-aga(uu -gagag-c)u 2161 cuuuuuugau uugauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGAG|--- ---------- 2341 ----(----- )[CGCGCUAA UU-Acuc-ga --|gcuug-g -----(cuug u--------- 2401 ---------- ---------- -----)---- c-ca-a-gu| a-ca-a---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------a| cu-ga-gaUA 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUUCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-g 2821 augc(--gaa a-)gcacu-a ccuaaucuc- -uaaa]---- ---------- ------cccg 2881 cuc-gUGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCC UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccucgg gag-ggcua- au-u-gaa-c 3061 u-gu------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gau----cu uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Phy.rubens 3273 bp RNA RNA 30-JUN-1994 DEFINITION Phycodrys rubens. ACCESSION No information KEYWORDS No information. SOURCE Phycodrys rubens. ORGANISM Phycodrys rubens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26198 LOCUS PDRFRA 1770 bp DNA PLN 30-JUN-1994 DEFINITION Phycodrys rubens DNA fragment. ACCESSION L26198 NID g507787 KEYWORDS PCR amplified. SOURCE Phycodrys rubens DNA. ORGANISM Phycodrys rubens Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Delesseriaceae; Phycodrys. REFERENCE 1 (bases 1 to 1770) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1770 /organism="Phycodrys rubens" /db_xref="taxon:35161" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 445 a 363 c 499 g 463 t BASE COUNT 445 a 363 c 499 g 463 t 1503 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ augaguga-c ua-------- 121 ---aa-a-ua ucga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcaguu 181 au-aguuucu ucggggg<-- ---uaa-ua- c-u>ACUCGG -AUAACCGCA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---accccgu uc-aa|auuu cuga|CCUAU 601 CAACUAU--G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GG GG-GCCC(-- gau)GGGCUU -C-CU-AAUU GGAAUGAGA| ACAAU(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGAGGAC |CG|-ggga- ucggacg-u- ggc---(--- 1921 --auuuu--- -------)-g g--u-acguu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- ugugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucaauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGC-gc --|uauua-c c----(uuuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ua| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ca-gC-CUAC 2581 CUAGACG]-- -|-------- -----GACUG CAG-GC(--- ---------- ----GUCUA- 2641 )GUCUGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a ccaaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGACG GU(UGCAAUU U)UCCG-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-c-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -guu----ug uu-ug----- gcu-uaaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Neu.fraxin 3273 bp RNA RNA 12-MAR-1999 DEFINITION Neurymenia fraxinifolia.; . ACCESSION AF1070 2 KEYWORDS . SOURCE Neurymenia fraxinifolia. ORGANISM Neurymenia fraxinifolia. REFERENCE 1 (bases 1 to 1694) AUTHORS N'Yeurt,A.D.R. TITLE Molecular studies on Fijian red algae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1694) AUTHORS N'Yeurt,A.D.R. TITLE Direct Submission JOURNAL Submitted (16-NOV-1998) Marine Studies Programme, The University of the South Pacific, P. O. Box 1168, Suva, Fiji STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF107042 BASE COUNT 436 a 344 c 463 g 451 t 1579 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~UUUA A-|GACUAAG 61 CCAUG-gCCU GC-CUGA|-- -----|---- ---(----)[ augagugu-- uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucggggg<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUAU--G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- gau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(GUUA 961 AACA)CCU|U -AUUGA-GGA ACC>CAGCAG A-|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -CCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-AAA-A-CA GCUGC(-GAC A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggaug-u- augc--(--- 1921 --uuau---- -------)-g g--u-acuuu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acauc aguaaggauu gac-aga(uu -gagag--)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GUUUCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGG-u- --|auguu-a uu---(cuug u--------- 2401 ---------- ---------- -----)--aa u-ag-c-ag| u-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -g-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GUCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU C)UCCU-UUU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-ggcug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(cuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ua uu-cg----- gcc-ugaa|c uuagucaaac 3181 cuuauuacuu agACAAAGGA GAAG-UCG~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Rho.confer 3273 bp RNA RNA 30-JUN-1994 DEFINITION Rhodomela confervoides. ACCESSION No information KEYWORDS No information. SOURCE Rhodomela confervoides. ORGANISM Rhodomela confervoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26203 LOCUS RMAFRA 1764 bp DNA PLN 30-JUN-1994 DEFINITION Rhodomela confervoides DNA fragment. ACCESSION L26203 NID g507799 KEYWORDS PCR amplified. SOURCE Rhodomela confervoides DNA. ORGANISM Rhodomela confervoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Rhodomela. REFERENCE 1 (bases 1 to 1764) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1764 /organism="Rhodomela confervoides" /db_xref="taxon:35163" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1738..1764 /standard_name="PCR primer" /note="putative" BASE COUNT 462 a 356 c 480 g 466 t BASE COUNT 462 a 356 c 480 g 466 t 1509 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU GC-CUGU|-- -----|---- ---(----)[ augagugu-- uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgggga<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAAG)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccga uc-aa|auuu cuga|CCUAU 601 CAACUAU--G AUGGUAAG-( GUAGGGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-A(- acu)UCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GACC(-- aau)GGUCUU -C-CU-AAUU GGAAUGAAA| ACAAU(G-UA 961 AACA)CCU|U -AUUGA-GG- AAC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-UA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggacg-u- ggcc--(--- 1921 --uauu---- -------)-g g--u-acguu cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-c- --|auguu-a uu---(cuug u--------- 2401 ---------- ---------- -----)--aa u-ag-c-au| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cg-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UAG-GC(--- ---------- ----UUUUA- 2641 )GCCUAUGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGU---- ---------- ----(----) [uc-aauggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 gugc(--gaa a-)gcaug-a cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-gUGCUG GGGAUAGAAG CU(UGCAAUU C)UCCU-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAU)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gag-agcug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ca uu-ug----- gcu-ucaa|c uuagucaaac 3181 cuuacuacuu agAGGAAGGA GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Corall 3273 bp RNA RNA 24-JAN-191 DEFINITION Coralliniales. ACCESSION No information KEYWORDS No information. SOURCE Coralliniales. ORGANISM Coralliniales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Amp.sp.PtA 3273 bp RNA RNA 16-DEC-1996 DEFINITION Amphiroa sp. (Pt. Alfred, South Africa). ACCESSION No information KEYWORDS No information. SOURCE Amphiroa sp. (Pt. Alfred, South Africa). ORGANISM Amphiroa sp. (Pt. Alfred, South Africa). REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62116 LOCUS ASU62116 1581 bp DNA PLN 16-DEC-1996 DEFINITION Amphiroa sp. nuclear 18S rRNA gene, partial sequence. ACCESSION U62116 NID g1732185 KEYWORDS . SOURCE Amphiroa sp. ORGANISM Amphiroa sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Amphiroa. REFERENCE 1 (bases 1 to 1581) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1581) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1581 /organism="Amphiroa sp." /strain="Pt. Alfred, South Africa" rRNA <1..>1581 /product="18S rRNA" BASE COUNT 407 a 304 c 440 g 427 t 3 others BASE COUNT 407 a 304 c 440 g 427 t 1695 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u uc-------- 121 ---uu-a-ug gcaa-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucaguga<-- ugacuu-ua- c-u>AC-CGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acacugu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUG-GG GG-AACC(-- uau)GGUUCU -U-CC-AAUU GGAAUGAGA| UCGAG(C-UA 961 AAUA)GCC|A AAUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUGG -AGG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UC 1741 U-CCGAAAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- nnau--(--- 1921 --uucg---- -------)-a ugac-ccgcc cggcacccu- -ucGN(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu aac-aga(uu -gagag-c)u 2161 cuuuuuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-Aggu-gg --|cauua-c cu---(uuu- ---------- 2401 ---------- ---------- -----)--gg g-ua-g-u-| --gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -c-au-cuUC 2581 UUAGACG]-- -|-------- -----GACUG GGG-GC(--- ---------- ----GUCUA- 2641 )GCCCCCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 acac(--gaa a-)gugug-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 GGCGC-AUG( UCAUC~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Amp.sp.PtL 3273 bp RNA RNA 16-DEC-1996 DEFINITION Amphiroa sp. (Pt. Lonsdale, Victoria, Australia). ACCESSION No information KEYWORDS No information. SOURCE Amphiroa sp. (Pt. Lonsdale, Victoria, Australia). ORGANISM Amphiroa sp. (Pt. Lonsdale, Victoria, Australia). REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62115 LOCUS ASU62115 1727 bp DNA PLN 16-DEC-1996 DEFINITION Amphiroa sp. nuclear 18S rRNA gene, partial sequence. ACCESSION U62115 NID g1732184 KEYWORDS . SOURCE Amphiroa sp. ORGANISM Amphiroa sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Amphiroa. REFERENCE 1 (bases 1 to 1727) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1727) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1727 /organism="Amphiroa sp." /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1727 /product="18S rRNA" BASE COUNT 429 a 340 c 480 g 466 t 12 others BASE COUNT 429 a 340 c 480 g 466 t 1558 others ORIGIN 1 |~~~~~~~~~ ~~GGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u uc-------- 121 ---uu-a-ug gcga-a]--- --------|- --ACU|-GUG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucaguga<-- ugacuu-ua- c-u>AC-CGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acacugu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUGuugAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUG-GG GG-AACC(-- uau)GGUUCU -U-CC-AAUU GGAAUGAGA| UCGAG(C-UA 961 AAUA)GCC|A AAUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUNNN -NNN--NN-N N--G(GU-GA AA---)UUCU -UGGA-U-UC 1741 U-CCA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gcau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu aac-aga(uu -gagag-c)u 2161 cuuuuuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-Aggu-gg --|cguua-c cu---(uuu- ---------- 2401 ---------- ---------- -----)--gg g-ua-g-u-| --gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -c-au-cuUC 2581 UUAGACG]-- -|-------- -----GACUG GGG-GC(--- ---------- ----GUCUA- 2641 )GCCCCCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 acgc(--gaa a-)gugug-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 GGCGCGAUG( UCAUCAU)CA UGCGCCUGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-cugag- cg-g-aaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uu----- cgg-cgaa|n ucagucgaac 3181 cuuaucauuu agAGGNAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Amp.fragil 3273 bp RNA RNA 16-DEC-1996 DEFINITION Amphiroa fragilissima.. ACCESSION No information KEYWORDS No information. SOURCE Amphiroa fragilissima. ORGANISM Amphiroa fragilissima. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60744 LOCUS AFU60744 1728 bp DNA PLN 16-DEC-1996 DEFINITION Amphiroa fragilissima nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60744 NID g1732158 KEYWORDS . SOURCE Amphiroa fragilissima. ORGANISM Amphiroa fragilissima Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Amphiroa. REFERENCE 1 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1728 /organism="Amphiroa fragilissima" /strain="Key Largo, FL, USA" rRNA <1..>1728 /product="18S ribosomal RNA" BASE COUNT 435 a 339 c 484 g 466 t 4 others BASE COUNT 435 a 339 c 484 g 466 t 1549 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u uc-------- 121 ---uu-a-ug gcga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucaguga<-- ugacuu-ua- c-u>AC-CGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acacugu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGUUAAG-( GUAGUGU)-C UU-AACAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUG-GG GG-AACC(-- uau)GGUUCU -U-CC-AAUU GGAAUGAGA| UCGAG(C-UA 961 AAUA)GCC|A AAUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUGG -AGG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UC 1741 U-CCA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- ggau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUN |-N|NNGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGUGU|G GAGC-UGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu aac-aga(uu -gagag-c)u 2161 cuuuuuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-Aggu-gg --|cauua-c cu---(uuu- ---------- 2401 ---------- ---------- -----)--gg g-ua-g-u-| --gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -g-au-cuUC 2581 UUAGACG]-- -|-------- -----GACUG GGG-GC(--- ---------- ----GUCUA- 2641 )GCCCCCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 acac(--gaa a-)gugug-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 GGCGC-AUG( UCAUCAU)CA UGCGCACGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-cugag- cg-g-aaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uu----- cgg-cgaa|c ucagucgaac 3181 cuuaucauuu agAGGAAG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bos.califo 3273 bp RNA RNA 16-DEC-1996 DEFINITION Bossiella californica.. ACCESSION No information KEYWORDS No information. SOURCE Bossiella californica. ORGANISM Bossiella californica. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60945 LOCUS BCU60945 1728 bp DNA PLN 16-DEC-1996 DEFINITION Bossiella californica nuclear 18S rRNA gene, partial sequence. ACCESSION U60945 NID g1732167 KEYWORDS . SOURCE Bossiella californica. ORGANISM Bossiella californica Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Bossiella. REFERENCE 1 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1728 /organism="Bossiella californica" /sub_species="schmittii" /strain="Stillwater Cove, Carmel, CA, USA" rRNA <1..>1728 /product="18S rRNA" BASE COUNT 424 a 353 c 458 g 417 t 76 others BASE COUNT 424 a 353 c 458 g 417 t 1621 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgauga<-- --uucu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--N--A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aucg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGNNN|N GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Aggg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-ugcga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(ucu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uc----- gug-agaa|c ucagucgaaa 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Art.filicu 3273 bp RNA RNA 16-DEC-1996 DEFINITION Arthrocardia filicula.. ACCESSION No information KEYWORDS No information. SOURCE Arthrocardia filicula. ORGANISM Arthrocardia filicula. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61258 LOCUS AFU61258 1742 bp DNA PLN 16-DEC-1996 DEFINITION Arthrocardia filicula nuclear 18S rRNA gene, partial sequence. ACCESSION U61258 NID g1732173 KEYWORDS . SOURCE Arthrocardia filicula. ORGANISM Arthrocardia filicula Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Arthrocardia. REFERENCE 1 (bases 1 to 1742) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1742) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1742 /organism="Arthrocardia filicula" /strain="South Africa" rRNA <1..>1742 /product="18S rRNA" BASE COUNT 426 a 344 c 455 g 424 t 93 others BASE COUNT 426 a 344 c 455 g 424 t 1624 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-auuuucu ucgguga<-- --uuuu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- auu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -C-NNNNN|N NNNNNUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c c----(auuu u--------- 2401 ---------- ---------- -----)---g g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcau(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAUG GU(UGCAAUU U)UCUG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-uguga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(auu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc cg-uc----- gug-agaa|c ucagucgaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA AC~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cal.cheilo 3273 bp RNA RNA 16-DEC-1996 DEFINITION Calliarthron cheilosporioides.. ACCESSION No information KEYWORDS No information. SOURCE Calliarthron cheilosporioides. ORGANISM Calliarthron cheilosporioides. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60943 LOCUS CCU60943 1699 bp DNA PLN 16-DEC-1996 DEFINITION Calliarthron cheilosporioides nuclear 18S rRNA gene, partial sequence. ACCESSION U60943 NID g1732168 KEYWORDS . SOURCE Calliarthron cheilosporioides. ORGANISM Calliarthron cheilosporioides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Calliarthron. REFERENCE 1 (bases 1 to 1699) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1699) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1699 /organism="Calliarthron cheilosporioides" /strain="Laguna Beach, Orange Co., CA, USA" rRNA <1..>1699 /product="18S rRNA" BASE COUNT 411 a 339 c 451 g 419 t 79 others BASE COUNT 411 a 339 c 451 g 419 t 1653 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgauga<-- --uucu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 N-NNN-NNN- N-NNN-N-NN NNNNN(-NAA A)-C|AUUUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aucg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G NNN(NNNN)N NNN-N-NNN- -NNUAAAGGA 2041 AUGA|ACGGA A-GGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Aggg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-ugcga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(ucu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uc----- gug-a~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cal.tuberc 3273 bp RNA RNA 16-DEC-1996 DEFINITION Calliarthron tuberculosum.. ACCESSION No information KEYWORDS No information. SOURCE Calliarthron tuberculosum. ORGANISM Calliarthron tuberculosum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60944 LOCUS CTU60944 1687 bp DNA PLN 16-DEC-1996 DEFINITION Calliarthron tuberculosum nuclear 18S rRNA gene, partial sequence. ACCESSION U60944 NID g1732170 KEYWORDS . SOURCE Calliarthron tuberculosum. ORGANISM Calliarthron tuberculosum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Calliarthron. REFERENCE 1 (bases 1 to 1687) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1687) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1687 /organism="Calliarthron tuberculosum" /strain="Bamfield, Vancouver Is., B.C., Canada" rRNA <1..>1687 /product="18S rRNA" BASE COUNT 425 a 353 c 470 g 432 t 7 others BASE COUNT 425 a 353 c 470 g 432 t 1593 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~CUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgauga<-- --uucu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGG-NNN- N-NAA-A-CU GCUGC(-GAA A)G-|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aucg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Aggg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-ugcga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(ucu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uc----- gug-agaa|c unagucgaac 3181 cuuaucauun a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bos.orbign 3273 bp RNA RNA 16-DEC-1996 DEFINITION Bossiella orbigniana.. ACCESSION No information KEYWORDS No information. SOURCE Bossiella orbigniana. ORGANISM Bossiella orbigniana. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60746 LOCUS BOU60746 1702 bp DNA PLN 16-DEC-1996 DEFINITION Bossiella orbigniana nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60746 NID g1732159 KEYWORDS . SOURCE Bossiella orbigniana. ORGANISM Bossiella orbigniana Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Bossiella. REFERENCE 1 (bases 1 to 1702) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1702) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1702 /organism="Bossiella orbigniana" /strain="Laguna Beach, Orange Co., CA, USA" /sub_species="dichotoma" rRNA <1..>1702 /product="18S ribosomal RNA" BASE COUNT 432 a 350 c 471 g 434 t 15 others BASE COUNT 432 a 350 c 471 g 434 t 1586 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~CUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgauga<-- --uucu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -ACG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aucg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -UGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Aggg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-ugcga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(ucu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uc----- gug-agaa|n ucagucgaac 3181 cuuaucauuu agg~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ser.macmil 3273 bp RNA RNA 16-DEC-1996 DEFINITION Serraticardia macmillanii.. ACCESSION No information KEYWORDS No information. SOURCE Serraticardia macmillanii. ORGANISM Serraticardia macmillanii. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62114 LOCUS SMU62114 1725 bp DNA PLN 16-DEC-1996 DEFINITION Serraticardia macmillanii nuclear 18S rRNA gene, partial sequence. ACCESSION U62114 NID g1732191 KEYWORDS . SOURCE Serraticardia macmillanii. ORGANISM Serraticardia macmillanii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Serraticardia. REFERENCE 1 (bases 1 to 1725) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1725) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1725 /organism="Serraticardia macmillanii" /strain="MacKerracher State Park, Mendocino Co., CA, USA" rRNA <1..>1725 /product="18S rRNA" BASE COUNT 438 a 359 c 482 g 446 t BASE COUNT 438 a 359 c 482 g 446 t 1548 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgauga<-- --uucu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GGUACCU(-- uau)GGGACU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aucg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-c-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCUG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-ugcga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(auu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uc----- gug-agaa|c ucagucgaac 3181 cuuauca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hal.roseum 3273 bp RNA RNA 16-DEC-1996 DEFINITION Haliptilon roseum.. ACCESSION No information KEYWORDS No information. SOURCE Haliptilon roseum. ORGANISM Haliptilon roseum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60947 LOCUS HRU60947 1724 bp DNA PLN 16-DEC-1996 DEFINITION Haliptilon roseum nuclear 18S rRNA gene, partial sequence. ACCESSION U60947 NID g1732171 KEYWORDS . SOURCE Haliptilon roseum. ORGANISM Haliptilon roseum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Haliptilon. REFERENCE 1 (bases 1 to 1724) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1724) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1724 /organism="Haliptilon roseum" /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1724 /product="18S rRNA" BASE COUNT 409 a 334 c 438 g 415 t 128 others BASE COUNT 409 a 334 c 438 g 415 t 1677 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uc-a-ac acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgguga<-- ---uuu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-ga|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUUCU-G(- acu)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AGCC(-- uua)GGUUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 N-NNN-NNN- N-NNN-N-NN NNNNN(-NNN N)NN|NUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GNN(NNAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uauua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| -c-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gan a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuucg gau-ngcaa- ga-g-aaa-g 3061 a-ggu----- ---------- ---------- --(uuc---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ua-uu----- gug-agaa|n ucagucgaac 3181 cuuaucauuu agAGGAAGG~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Che.sagitt 3273 bp RNA RNA 16-DEC-1996 DEFINITION Cheilosporum sagittatum.. ACCESSION No information KEYWORDS No information. SOURCE Cheilosporum sagittatum. ORGANISM Cheilosporum sagittatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60745 LOCUS CSU60745 1707 bp DNA PLN 16-DEC-1996 DEFINITION Cheilosporum sagittatum nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60745 NID g1732161 KEYWORDS . SOURCE Cheilosporum sagittatum. ORGANISM Cheilosporum sagittatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Cheilosporum. REFERENCE 1 (bases 1 to 1707) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1707) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1707 /organism="Cheilosporum sagittatum" /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1707 /product="18S ribosomal RNA" BASE COUNT 423 a 348 c 454 g 429 t 53 others BASE COUNT 423 a 348 c 454 g 429 t 1619 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~GA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uc-a-ac acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgguga<-- ---uuu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-ga|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAUUUACCC- AAUUCU-G(- acu)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN--- 1681 NNGGGCAUU| UGU-AUU-CG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-UGA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uauua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-g--u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gag a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuucg gau-ugcga- ua-g-aaa-g 3061 a--cg----- ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uu----- gug-agaa|n ucagucgaac 3181 cuuaucauuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cor.offici 3273 bp RNA RNA 24-JAN-191 DEFINITION Corallina officinalis. ACCESSION No information KEYWORDS No information. SOURCE Corallina officinalis. ORGANISM Corallina officinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26184 LOCUS CNWFRA 1786 bp ds-DNA PLN 30-JUN-1994 DEFINITION Corallina officinalis DNA fragment. ACCESSION L26184 KEYWORDS PCR amplified. SOURCE Corallina officinalis DNA. ORGANISM Corallina officinalis Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Corallinales; Corallinaceae. REFERENCE 1 (bases 1 to 1786) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507226 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1760..1786 /standard_name="PCR primer" /note="putative" source 1..1786 /organism="Corallina officinalis" /sequenced_mol="DNA" BASE COUNT 458 a 370 c 501 g 457 t BASE COUNT 458 a 370 c 501 g 457 t 1487 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgguga<-- --uuuu-ua- c-u>ACUCGG -AUAAUCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- aua)AAGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCAG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aucg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugcga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(ucu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uc----- gug-agaa|c ucagucgaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Jan.crassa 3273 bp RNA RNA 16-DEC-1996 DEFINITION Jania crassa.. ACCESSION No information KEYWORDS No information. SOURCE Jania crassa. ORGANISM Jania crassa. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62113 LOCUS JCU62113 1717 bp DNA PLN 16-DEC-1996 DEFINITION Jania crassa nuclear 18S rRNA gene, partial sequence. ACCESSION U62113 NID g1732186 KEYWORDS . SOURCE Jania crassa. ORGANISM Jania crassa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Jania. REFERENCE 1 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1717 /organism="Jania crassa" /strain="Palm Beach, Natal, South Africa" rRNA <1..>1717 /product="18S rRNA" BASE COUNT 434 a 350 c 473 g 459 t 1 others BASE COUNT 434 a 350 c 473 g 459 t 1557 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uc-a-ac acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgguga<-- uuuuuu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-ga|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GN AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|uauua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| u-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| -c-UU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gag a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAACU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuucg gau-cguga- ug-g-gaa-g 3061 a--cg----- ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- -----cg-cu -ugu----cc uu-uu----- gug-agaa|g ucagucgaac 3181 cuuaucau~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cor.elonga 3273 bp RNA RNA 16-DEC-1996 DEFINITION Corallina elongata.. ACCESSION No information KEYWORDS No information. SOURCE Corallina elongata. ORGANISM Corallina elongata. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60946 LOCUS CEU60946 1729 bp DNA PLN 16-DEC-1996 DEFINITION Corallina elongata nuclear 18S rRNA gene, partial sequence. ACCESSION U60946 NID g1732169 KEYWORDS . SOURCE Corallina elongata. ORGANISM Corallina elongata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Corallina. REFERENCE 1 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1729 /organism="Corallina elongata" /strain="Swakopmund, Namibia, South Africa" rRNA <1..>1729 /product="18S rRNA" BASE COUNT 429 a 353 c 479 g 442 t 26 others BASE COUNT 429 a 353 c 479 g 442 t 1570 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaa-u aa-------- 121 ---uu-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgguga<-- --uuuu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GCAC(-- cua)GUGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCAG -GC---NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 N-NGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aucg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugcga- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(ucu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-uc----- gug-agaa|n ucagucgaac 3181 cuuaucauuu agAG~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lit.asperg 3273 bp RNA RNA 16-DEC-1996 DEFINITION Lithothrix aspergillum.. ACCESSION No information KEYWORDS No information. SOURCE Lithothrix aspergillum. ORGANISM Lithothrix aspergillum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61249 LOCUS LAU61249 1721 bp DNA PLN 16-DEC-1996 DEFINITION Lithothrix aspergillum nuclear 18S rRNA gene, partial sequence. ACCESSION U61249 NID g1732177 KEYWORDS . SOURCE Lithothrix aspergillum. ORGANISM Lithothrix aspergillum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Lithothrix. REFERENCE 1 (bases 1 to 1721) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1721) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1721 /organism="Lithothrix aspergillum" /strain="Laguna Beach, Orange Co., CA, USA" rRNA <1..>1721 /product="18S rRNA" BASE COUNT 433 a 338 c 471 g 456 t 23 others BASE COUNT 433 a 338 c 471 g 456 t 1575 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguua-u uc-------- 121 ---ug-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucggaga<-- ugauuu-ua- c-u>-CUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---nnnccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCCA AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUG-GG GG-AACC(-- uau)GGUUCU -U-CC-AAUU GGAAUGAGA| UCGAG(C-UA 961 AAAA)GCA|A -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUNG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-NNN-AAG- A-CAA-A-CU GCUGC(-GAA A)G-|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --aacg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gg --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG GGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUAGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 acac(--gaa a-)gugu--g ccuaaucuu- -uaaa]---- ---------- ------ucug 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 GGCGC-GUG( UCAUCAU)CA CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugagn- ug-g-aaa-a 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -ugu----uc ug-uu----- uug-agaa|c ucagucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Jan.rubens 3273 bp RNA RNA 16-DEC-1996 DEFINITION Jania rubens.. ACCESSION No information KEYWORDS No information. SOURCE Jania rubens. ORGANISM Jania rubens. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61259 LOCUS JRU61259 1668 bp DNA PLN 16-DEC-1996 DEFINITION Jania rubens nuclear 18S rRNA gene, partial sequence. ACCESSION U61259 NID g1732176 KEYWORDS . SOURCE Jania rubens. ORGANISM Jania rubens Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Jania. REFERENCE 1 (bases 1 to 1668) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1668) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1668 /organism="Jania rubens" /strain="Galway, Ireland" rRNA <1..>1668 /product="18S rRNA" BASE COUNT 331 a 302 c 375 g 347 t 313 others BASE COUNT 331 a 302 c 375 g 347 t 1918 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaggaaua au-------- 121 ---ca-a-c- acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgguga<-- ---uuu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-ga|auuu cuga|CCUAU 601 CAACUCUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(NN-NN NN---)NNNN -NNNN-N-NN 1741 N-NNN-NNN- N-NNN-N-NN NNNNN(-NNN N)NN|NNNNN NNNN|N-NNN NNNNNNNNNN 1801 NN|NN-NNNN NNNNN----- NNNNNNNNNN NNNN--NNN- N(N-NNNN-N -NNN)N-NNN 1861 NNNNN|NNNN -NNN-NNNNN NNNNNNNNNN |NN|-NNnn- nnnnnnn-n- nnnn--(--- 1921 --nnnn---- -------)-- nnnn-nnnnn nnnnncccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GA-CCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|uauua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gag a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AACGC-GGG( UCAUCAU)CC CGCGN-NGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuucg gau-ugcga- ca~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mas.canali 3273 bp RNA RNA 16-DEC-1996 DEFINITION Mastophoropsis canaliculata. subsp. misspelled Mastophoropsis caniculata. ACCESSION No information KEYWORDS No information. SOURCE Mastophoropsis canaliculata. subsp. misspelled Mastophoropsis caniculata. ORGANISM Mastophoropsis canaliculata. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62118 LOCUS MCU62118 1540 bp DNA PLN 16-DEC-1996 DEFINITION Mastophoropsis caniculata nuclear 18S rRNA gene, partial sequence. ACCESSION U62118 NID g1732190 KEYWORDS . SOURCE Mastophoropsis caniculata. ORGANISM Mastophoropsis caniculata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Mastophoropsis. REFERENCE 1 (bases 1 to 1540) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1540) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1540 /organism="Mastophoropsis caniculata" /strain="Beachport, South Australia" rRNA <1..>1540 /product="18S rRNA" BASE COUNT 374 a 289 c 391 g 369 t 117 others BASE COUNT 374 a 289 c 391 g 369 t 1850 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUCAA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aau)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCA -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-UCA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gagu--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGNNN-N NNN(NNNN)N NNN-N-NNN- -NNNNNNNNN 2041 NNNN|NNNNN NNNNNNNNNN -NNNNNNN|N -AGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -g-nnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-Aggg-gc --|uacua-c c----(uuuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ua| c-gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ac-cc-cuUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UC~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cla.parcum 3273 bp RNA RNA 16-DEC-1996 DEFINITION Clathromorphum parcum.. ACCESSION No information KEYWORDS No information. SOURCE Clathromorphum parcum. ORGANISM Clathromorphum parcum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61252 LOCUS CPU61252 1719 bp DNA PLN 16-DEC-1996 DEFINITION Clathromorphum parcum nuclear 18S rRNA gene, partial sequence. ACCESSION U61252 NID g1732174 KEYWORDS . SOURCE Clathromorphum parcum. ORGANISM Clathromorphum parcum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Clathromorphum. REFERENCE 1 (bases 1 to 1719) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1719) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1719 /organism="Clathromorphum parcum" /strain="Horseshoe Cove, Sonoma Co., CA, USA" rRNA <1..>1719 /product="18S rRNA" BASE COUNT 418 a 349 c 465 g 434 t 53 others BASE COUNT 418 a 349 c 465 g 434 t 1607 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ua-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacu-uu- c-u>ACACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- ACUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCA -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-UGA-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NN-UGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uauua-c ug---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| g-ga------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ac-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGG---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcgc(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCUC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugcac- cg-g-gaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -ugu----uc ug-cc----- ccg-agaa|c ucagucgaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lit.glacia 3273 bp RNA RNA 16-DEC-1996 DEFINITION Lithothamnion glaciale.. ACCESSION No information KEYWORDS No information. SOURCE Lithothamnion glaciale. ORGANISM Lithothamnion glaciale. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60738 LOCUS LGU60738 1729 bp DNA PLN 16-DEC-1996 DEFINITION Lithothamnion glaciale nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60738 NID g1732162 KEYWORDS . SOURCE Lithothamnion glaciale. ORGANISM Lithothamnion glaciale Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Lithothamnion. REFERENCE 1 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1729 /organism="Lithothamnion glaciale" /strain="Labrador, Canada" rRNA <1..>1729 /product="18S ribosomal RNA" BASE COUNT 434 a 362 c 487 g 446 t BASE COUNT 434 a 362 c 487 g 446 t 1544 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-aucg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacu-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c cg---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cccugg gau-ugcug- cg-a-ag--g 3061 g-acg----- ---------- ---------- --(uuc---- -)-------- ---------- 3121 ---------- -----cg-cu -ugc----uc ug-ug----- gcg-agaa|c ucggucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lit.tophif 3273 bp RNA RNA 16-DEC-1996 DEFINITION Lithothamnion tophiforme.. ACCESSION No information KEYWORDS No information. SOURCE Lithothamnion tophiforme. ORGANISM Lithothamnion tophiforme. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60739 LOCUS LTU60739 1683 bp DNA PLN 16-DEC-1996 DEFINITION Lithothamnion tophiforme nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60739 NID g1732163 KEYWORDS . SOURCE Lithothamnion tophiforme. ORGANISM Lithothamnion tophiforme Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Lithothamnion. REFERENCE 1 (bases 1 to 1683) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1683) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1683 /organism="Lithothamnion tophiforme" /strain="Labrador, Canada" rRNA <1..>1683 /product="18S ribosomal RNA" BASE COUNT 427 a 347 c 474 g 433 t 2 others BASE COUNT 427 a 347 c 474 g 433 t 1592 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~U|GCCAG UGGU-A-UAU GCUUGUCUAA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacu-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-NGG-AAG- A-CAA-A-NA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c cg---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cccugg gau-ugcug- cg-a-ag--g 3061 g-acg----- ---------- ---------- --(uuc---- -)-------- ---------- 3121 ---------- -----cg-cu -ugc----uc ug-u~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cla.compac 3273 bp RNA RNA 16-DEC-1996 DEFINITION Clathromorphum compactum.. ACCESSION No information KEYWORDS No information. SOURCE Clathromorphum compactum. ORGANISM Clathromorphum compactum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60742 LOCUS CCU60742 1690 bp DNA PLN 16-DEC-1996 DEFINITION Clathromorphum compactum nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60742 NID g1732160 KEYWORDS . SOURCE Clathromorphum compactum. ORGANISM Clathromorphum compactum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Clathromorphum. REFERENCE 1 (bases 1 to 1690) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1690) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1690 /organism="Clathromorphum compactum" /strain="Newfoundland, Canada" rRNA <1..>1690 /product="18S ribosomal RNA" BASE COUNT 411 a 344 c 461 g 418 t 56 others BASE COUNT 411 a 344 c 461 g 418 t 1639 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgauga<-- -uaacu-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uac)GGCUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCA -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-UGA-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GA--CUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ac-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugcag- ng-g-aaa-g 3061 g-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.ferox 3273 bp RNA RNA 16-DEC-1996 DEFINITION Leptophytum ferox.. ACCESSION No information KEYWORDS No information. SOURCE Leptophytum ferox. ORGANISM Leptophytum ferox. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62120 LOCUS LFU62120 1717 bp DNA PLN 16-DEC-1996 DEFINITION Leptophytum ferox nuclear 18S rRNA gene, partial sequence. ACCESSION U62120 NID g1732188 KEYWORDS . SOURCE Leptophytum ferox. ORGANISM Leptophytum ferox Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Leptophytum. REFERENCE 1 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1717 /organism="Leptophytum ferox" /strain="South Africa" rRNA <1..>1717 /product="18S rRNA" BASE COUNT 422 a 350 c 464 g 440 t 41 others BASE COUNT 422 a 350 c 464 g 440 t 1597 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~CCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>ACACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-A(- auu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AUCC(-- uau)GGAUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA--N- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGA-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c cg---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| ac-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugcag- cg-g-gaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-cc----- gcg-agaa|c ucagucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.acerva 3273 bp RNA RNA 16-DEC-1996 DEFINITION Leptophytum acervatum.. ACCESSION No information KEYWORDS No information. SOURCE Leptophytum acervatum. ORGANISM Leptophytum acervatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62119 LOCUS LAU62119 1723 bp DNA PLN 16-DEC-1996 DEFINITION Leptophytum acervatum nuclear 18S rRNA gene, partial sequence. ACCESSION U62119 NID g1732187 KEYWORDS . SOURCE Leptophytum acervatum. ORGANISM Leptophytum acervatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Leptophytum. REFERENCE 1 (bases 1 to 1723) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1723) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1723 /organism="Leptophytum acervatum" /strain="South Africa" rRNA <1..>1723 /product="18S rRNA" BASE COUNT 434 a 360 c 479 g 448 t 2 others BASE COUNT 434 a 360 c 479 g 448 t 1552 others ORIGIN 1 |~~~~~~~~~ ~~~~U(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-A(- auu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AUCC(-- uau)GGAUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGA-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c cg---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| ac-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugcag- cg-g-gaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-cc----- gng-agaa|c ucagucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Syn.patena 3273 bp RNA RNA 16-DEC-1996 DEFINITION Synarthrophyton patena.. ACCESSION No information KEYWORDS No information. SOURCE Synarthrophyton patena. ORGANISM Synarthrophyton patena. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61255 LOCUS SPU61255 1662 bp DNA PLN 16-DEC-1996 DEFINITION Synarthrophyton patena nuclear 18S rRNA gene, partial sequence. ACCESSION U61255 NID g1732183 KEYWORDS . SOURCE Synarthrophyton patena. ORGANISM Synarthrophyton patena Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Synarthrophyton. REFERENCE 1 (bases 1 to 1662) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1662) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1662 /organism="Synarthrophyton patena" /strain="Beachport, South Australia" rRNA <1..>1662 /product="18S rRNA" BASE COUNT 407 a 334 c 450 g 428 t 43 others BASE COUNT 407 a 334 c 450 g 428 t 1654 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCU-A AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ua-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- ACUCGG-G(- auu)CCCGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NN-N(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggnnnncu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CAGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| ac-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ug~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mes.erubes 3273 bp RNA RNA 16-DEC-1996 DEFINITION Mesophyllum erubescens.. ACCESSION No information KEYWORDS No information. SOURCE Mesophyllum erubescens. ORGANISM Mesophyllum erubescens. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61257 LOCUS MEU61257 1666 bp DNA PLN 16-DEC-1996 DEFINITION Mesophyllum erubescens nuclear 18S rRNA gene, partial sequence. ACCESSION U61257 NID g1732179 KEYWORDS . SOURCE Mesophyllum erubescens. ORGANISM Mesophyllum erubescens Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Mesophyllum. REFERENCE 1 (bases 1 to 1666) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1666) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1666 /organism="Mesophyllum erubescens" /strain="Brazil" rRNA <1..>1666 /product="18S rRNA" BASE COUNT 419 a 337 c 450 g 417 t 43 others BASE COUNT 419 a 337 c 450 g 417 t 1650 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ua-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>ACACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGNGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UCACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuunnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|-GA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uauua-c cg---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ac-cU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcgc(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU C)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-u~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Met.radiat 3273 bp RNA RNA 16-DEC-1996 DEFINITION Metagoniolithon radiatum.. ACCESSION No information KEYWORDS No information. SOURCE Metagoniolithon radiatum. ORGANISM Metagoniolithon radiatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61250 LOCUS MRU61250 1685 bp DNA PLN 16-DEC-1996 DEFINITION Metagoniolithon radiatum nuclear 18S rRNA gene, partial sequence. ACCESSION U61250 NID g1732180 KEYWORDS . SOURCE Metagoniolithon radiatum. ORGANISM Metagoniolithon radiatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Metagoniolithoideae; Metagoniolithon. REFERENCE 1 (bases 1 to 1685) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1685) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1685 /organism="Metagoniolithon radiatum" /strain="Beachport, South Australia" rRNA <1..>1685 /product="18S rRNA" BASE COUNT 385 a 321 c 416 g 394 t 169 others BASE COUNT 385 a 321 c 416 g 394 t 1757 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~CCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u uc-------- 121 ---ug-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuuca ucgguga<-- ugaguu-ua- c-u>-CACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UN AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUGCCC- AAUCCA-G(- acu)CUGGG- 781 A-GGC|A|-G UGACAAUUAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 NUCAAUA-GG GG-AUCC(-- aua)GGGUCU -U-CU-AAUU GGAAUGAGC| ACAAG(C-UA 961 AACA)GCU|U -AU-NN-NN- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNNN| NNN-NNNNNN -NNN--NN-N NA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggugag- gaau--(--- 1921 --uacg---- -------)-a ugac-ccacc cggcacccu- -ucGG(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [aga-auau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauagg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|A UUCGU|GCA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGUGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| ua-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGU-GU(--- ---------- ----GUCUA- 2641 )ACACACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcgc(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-cugag- cg-g-aaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-ca----- ugg~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Met.stelli 3273 bp RNA RNA 16-DEC-1996 DEFINITION Metagoniolithon stelliferum.. ACCESSION No information KEYWORDS No information. SOURCE Metagoniolithon stelliferum. ORGANISM Metagoniolithon stelliferum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61251 LOCUS MSU61251 1622 bp DNA PLN 16-DEC-1996 DEFINITION Metagoniolithon stelliferum nuclear 18S rRNA gene, partial sequence. ACCESSION U61251 NID g1732181 KEYWORDS . SOURCE Metagoniolithon stelliferum. ORGANISM Metagoniolithon stelliferum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Metagoniolithoideae; Metagoniolithon. REFERENCE 1 (bases 1 to 1622) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1622) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1622 /organism="Metagoniolithon stelliferum" /strain="Portsea, Victoria, Australia" rRNA <1..>1622 /product="18S rRNA" BASE COUNT 413 a 325 c 431 g 404 t 49 others BASE COUNT 413 a 325 c 431 g 404 t 1700 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u uc-------- 121 ---ug-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuuca ucgguga<-- ugaguu-ua- c-u>-CACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUGCCC- AAUCCA-G(- acu)CUGGG- 781 A-GGC|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AUCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-UGA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggugag- gcau--(--- 1921 --uacg---- -------)-a ugac-ccacc cggcacccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [aga-auau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| ua-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGU-GU(--- ---------- ----GUCUA- 2641 )ACACACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcgc(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CG~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hey.woelke 3273 bp RNA RNA 16-DEC-1996 DEFINITION Heydrichia woelkerlingii.. ACCESSION No information KEYWORDS No information. SOURCE Heydrichia woelkerlingii. ORGANISM Heydrichia woelkerlingii. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61253 LOCUS HWU61253 1758 bp DNA PLN 16-DEC-1996 DEFINITION Heydrichia woelkerlingii nuclear 18S rRNA gene, partial sequence. ACCESSION U61253 NID g1732175 KEYWORDS . SOURCE Heydrichia woelkerlingii. ORGANISM Heydrichia woelkerlingii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Sporolithaceae; Heydrichia. REFERENCE 1 (bases 1 to 1758) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1758) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1758 /organism="Heydrichia woelkerlingii" /strain="Betty's Bay, South Africa" rRNA <1..>1758 /product="18S rRNA" BASE COUNT 421 a 368 c 516 g 451 t 2 others BASE COUNT 421 a 368 c 516 g 451 t 1517 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CUCUAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>ACUCGG -AUAANCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aaa)UCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- gau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-CA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgug- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGa-gc --|uagua-c ca---(uuc- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| ac-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-agcggg 2761 -ugc------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u ccuaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGACG GU(UGCAAUU U)UCCG-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-ugacg- ug-a-ggg-g 3061 a-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uu cu-ug----- ucg-ggaa|c uuagucgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGG~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.foveat 3273 bp RNA RNA 23-NOV-1997 DEFINITION Leptophytum foveatum.. ACCESSION No information KEYWORDS No information. SOURCE Leptophytum foveatum. ORGANISM Leptophytum foveatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE on nuclear small-subunit rRNA gene sequences A phylogenetic study of the Corallinales (Rhodophyta) based JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF031470 LOCUS AF031470 1664 bp DNA PLN 23-NOV-1997 DEFINITION Leptophytum foveatum 18S ribosomal RNA gene, partial sequence. ACCESSION AF031470 NID g2641189 KEYWORDS . SOURCE Leptophytum foveatum. ORGANISM Leptophytum foveatum Eukaryotae; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Leptophytum. REFERENCE 1 (bases 1 to 1664) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE A phylogenetic study of the Corallinales (Rhodophyta) based on nuclear small-subunit rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1664) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-OCT-1997) Bigelow Laboratory for Ocean Sciences, P.O. Box 475, McKown Point, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1664 /organism="Leptophytum foveatum" /strain="South Africa" /db_xref="taxon:69446" rRNA <1..>1664 /product="18S ribosomal RNA" BASE COUNT 432 a 348 c 459 g 425 t BASE COUNT 432 a 348 c 459 g 425 t 1609 others ORIGIN 1 |~~~~~~~~~ ~~GGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uac)GG--CU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag--)- 2161 ---------- --------]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |--------- ----|----| --------|- -----|---- 2281 (----)---- -----G(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c cg---(uuuu a--------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ac-CU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-uguag- cg-g-gaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-cc----- acg-aaaa|c ucagucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lit.kotsch 3273 bp RNA RNA 16-DEC-1996 DEFINITION Lithophyllum kotschyanum.. ACCESSION No information KEYWORDS No information. SOURCE Lithophyllum kotschyanum. ORGANISM Lithophyllum kotschyanum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U62117 LOCUS LKU62117 1714 bp DNA PLN 16-DEC-1996 DEFINITION Lithophyllum kotschyanum nuclear 18S rRNA gene, partial sequence. ACCESSION U62117 NID g1732189 KEYWORDS . SOURCE Lithophyllum kotschyanum. ORGANISM Lithophyllum kotschyanum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Lithophylloideae; Lithophyllum. REFERENCE 1 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1714 /organism="Lithophyllum kotschyanum" /strain="Fiji" rRNA <1..>1714 /product="18S rRNA" BASE COUNT 432 a 356 c 474 g 448 t 4 others BASE COUNT 432 a 356 c 474 g 448 t 1563 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u uc-------- 121 ---ug-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgguga<-- ugauuu-ua- c-u>-CACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-UAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AGCC(-- uau)GGUUCU -U-CU-AAUU GGAAUGAGA| UCGAG(C-UA 961 AACA)GCc|a UAUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gcau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-g- --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gc------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------a| ua-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCNNGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----ggu-a 2821 acac(--gaa a-)gugug-u ccuaaucuu- -caaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GUU( UCAUCAU)AA CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gac-cugan- cg-g-aa--a 3061 a-acg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -ugu----uc ug-cu----- cgg-gnaa|c ucagucgaac 3181 cuuaucau~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mes.engelh 3273 bp RNA RNA 16-DEC-1996 DEFINITION Mesophyllum engelhartii.. ACCESSION No information KEYWORDS No information. SOURCE Mesophyllum engelhartii. ORGANISM Mesophyllum engelhartii. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61256 LOCUS MEU61256 1693 bp DNA PLN 16-DEC-1996 DEFINITION Mesophyllum engelhartii nuclear 18S rRNA gene, partial sequence. ACCESSION U61256 NID g1732178 KEYWORDS . SOURCE Mesophyllum engelhartii. ORGANISM Mesophyllum engelhartii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Mesophyllum. REFERENCE 1 (bases 1 to 1693) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1693) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1693 /organism="Mesophyllum engelhartii" /strain="South Africa" rRNA <1..>1693 /product="18S rRNA" BASE COUNT 417 a 342 c 453 g 434 t 47 others BASE COUNT 417 a 342 c 453 g 434 t 1627 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaacc-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- uac)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---NN NN|NNNN-N- 1681 NNNNNNNUU| UGU-AUUCCG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggca-ccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagagac)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ac-cU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 acac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-uguan- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Met.chara 3273 bp RNA RNA 16-DEC-1996 DEFINITION Metagoniolithon chara.. ACCESSION No information KEYWORDS No information. SOURCE Metagoniolithon chara. ORGANISM Metagoniolithon chara. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60743 LOCUS MCU60743 1714 bp DNA PLN 16-DEC-1996 DEFINITION Metagoniolithon chara nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60743 NID g1732164 KEYWORDS . SOURCE Metagoniolithon chara. ORGANISM Metagoniolithon chara Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Metagoniolithoideae; Metagoniolithon. REFERENCE 1 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1714 /organism="Metagoniolithon chara" /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1714 /product="18S ribosomal RNA" BASE COUNT 442 a 346 c 463 g 448 t 15 others BASE COUNT 442 a 346 c 463 g 448 t 1574 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~CCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u uc-------- 121 ---ug-a-ag acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuuca ucgguga<-- ugaguu-ua- c-u>-CACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGC|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AUCC(-- uau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCAG -GCG--CU-A GA-G(GU-GA AA---)CUCU -UAGA-U-UG 1741 C-UGA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggugag- gcau--(--- 1921 --uacg---- -------)-a ugac-ccacc cggcacccu- -ucGG(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CNNNNNN|N NNNNNNNNG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [aga-auau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauagg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|A UUCGU|GCA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGUGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gc-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------a| ua-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGU-GU(--- ---------- ----GUCUA- 2641 )AUACACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcgc(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-cugag- ug-g-aaa-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-ca----- ugg-agaa|c ucagucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Phy.laevig 3273 bp RNA RNA 16-DEC-1996 DEFINITION Phymatolithon laevigatum.. ACCESSION No information KEYWORDS No information. SOURCE Phymatolithon laevigatum. ORGANISM Phymatolithon laevigatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60740 LOCUS PLU60740 1691 bp DNA PLN 16-DEC-1996 DEFINITION Phymatolithon laevigatum nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60740 NID g1732165 KEYWORDS . SOURCE Phymatolithon laevigatum. ORGANISM Phymatolithon laevigatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Phymatolithon. REFERENCE 1 (bases 1 to 1691) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1691) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1691 /organism="Phymatolithon laevigatum" /strain="Kimmeridge, Dorset, UK" rRNA <1..>1691 /product="18S ribosomal RNA" BASE COUNT 424 a 346 c 477 g 437 t 7 others BASE COUNT 424 a 346 c 477 g 437 t 1589 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~UCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaaac-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AUCC(-- uac)GGAUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCAG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CNNN-NNNAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ug---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ac-cU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCCA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -ucg------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -gaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-NGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugcug- cg-g-agg-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-cg----- gcg-agaa|c ucagucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Phy.lenorm 3273 bp RNA RNA 16-DEC-1996 DEFINITION Phymatolithon lenormandii.. ACCESSION No information KEYWORDS No information. SOURCE Phymatolithon lenormandii. ORGANISM Phymatolithon lenormandii. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60741 LOCUS PLU60741 1720 bp DNA PLN 16-DEC-1996 DEFINITION Phymatolithon lenormandii nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60741 NID g1732166 KEYWORDS . SOURCE Phymatolithon lenormandii. ORGANISM Phymatolithon lenormandii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Phymatolithon. REFERENCE 1 (bases 1 to 1720) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1720 /organism="Phymatolithon lenormandii" /strain="Kimmeridge, Dorset, UK" rRNA <1..>1720 /product="18S ribosomal RNA" BASE COUNT 420 a 346 c 470 g 442 t 42 others BASE COUNT 420 a 346 c 470 g 442 t 1595 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugg<-- -uaaau-ua- c-u>AUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUA-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-AUCC(-- uuc)GG-UCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --ugcg---- -------)-a ugac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGNNN|N NNNNCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uacua-c ug---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ac-cU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCCGGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -ucg------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gcac(--gaa a-)guguu-u ccuaaucuu- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-ugcug- cg-g-agg-g 3061 a-gcg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uc ug-cg----- gcg-agaa|c ucagucgaac 3181 cuuaucauuu ag~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Spo.yendoi 3273 bp RNA RNA 16-DEC-1996 DEFINITION Spongites yendoi.. ACCESSION No information KEYWORDS No information. SOURCE Spongites yendoi. ORGANISM Spongites yendoi. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60948 LOCUS SYU60948 1712 bp DNA PLN 16-DEC-1996 DEFINITION Spongites yendoi nuclear 18S rRNA gene, partial sequence. ACCESSION U60948 NID g1732172 KEYWORDS . SOURCE Spongites yendoi. ORGANISM Spongites yendoi Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Spongites. REFERENCE 1 (bases 1 to 1712) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1712) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1712 /organism="Spongites yendoi" /strain="Holbaaipunt, Cape Hangklip, South Africa" rRNA <1..>1712 /product="18S rRNA" BASE COUNT 426 a 358 c 478 g 450 t BASE COUNT 426 a 358 c 478 g 450 t 1561 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AA|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguua-u au-------- 121 ---ga-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgagga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---accucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGAUAAG-( GUAGUGU)-C UU-AUCAU|G G-UGG-CAAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCA-G(- acu)CUGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAGUA-GG GG-AUCC(-- uau)GGGUCU -U-CU-AACC GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GA- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| UGU-AUUUCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGA-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUA CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcgag- gaau--(--- 1921 --uacg---- -------)-a ugac-ccgcc cggcacccu- -ccGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGAg-gc --|uauua-u ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| c-gu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -c-CU-CUUC 2581 UUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGUGGA---- ---------- ----(----) [uc-agcggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 acgc(--gag a-)gcuuu-u ccuaaucuu- -caaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGACG GU(UGCAAUU U)UCCG-UCA UGAACGAGGA AUACCUUGUA 2941 AACGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cuuugg gau-cuaag- cg-g-aaa-a 3061 g-acg----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----cg-cu -uuu----uu ug-uu----- ggg-agaa|c ucagucgaac 3181 cuuaucauuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Spor.durum 3273 bp RNA RNA 16-DEC-1996 DEFINITION Sporolithon durum.. ACCESSION No information KEYWORDS No information. SOURCE Sporolithon durum. ORGANISM Sporolithon durum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U61254 LOCUS SDU61254 1638 bp DNA PLN 16-DEC-1996 DEFINITION Sporolithon durum nuclear 18S rRNA gene, partial sequence. ACCESSION U61254 NID g1732182 KEYWORDS . SOURCE Sporolithon durum. ORGANISM Sporolithon durum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Sporolithaceae; Sporolithon. REFERENCE 1 (bases 1 to 1638) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1638) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1638 /organism="Sporolithon durum" /strain="Port MacDonnell, South Australia" rRNA <1..>1638 /product="18S rRNA" BASE COUNT 394 a 332 c 449 g 398 t 65 others BASE COUNT 394 a 332 c 449 g 398 t 1700 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucgaugg<-- -uaaac-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)CCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)UCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- gau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAUG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCAUU| UGU-AUUCCU -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-AGG-AACG A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucaggcgug- gaau--(--- 1921 --uacg---- -------)-a ugac-ccgcc uggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [ngg-acau- agugaggauu gac-aga(uu -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN -UCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|uauua-c ca---(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ug-g-gu| a-gu-gaguu uuu------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ------gug| ac-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CAG-AC(--- ---------- ----GUCUA- 2641 )GUCUNCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-agcggg 2761 -ugu------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUAGACG GU(UGCAAUU U)UCCG-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CACGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CG~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Gelidi 3273 bp RNA RNA 24-JAN-191 DEFINITION Gelidiales. ACCESSION No information KEYWORDS No information. SOURCE Gelidiales. ORGANISM Gelidiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Gel.ligula 3273 bp RNA RNA 09-MAR-1999 DEFINITION Gelidiella ligulata.. ACCESSION No information KEYWORDS No information. SOURCE Gelidiella ligulata. ORGANISM Gelidiella ligulata. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses Phylogenic affinities of morphologically unique genera JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017669 LOCUS AB017669 1685 bp DNA PLN 09-MAR-1999 DEFINITION Gelidiella ligulata gene for 18S rRNA, partial sequence. ACCESSION AB017669 NID g4519637 VERSION AB017669.1 GI:4519637 KEYWORDS . SOURCE Gelidiella ligulata DNA. ORGANISM Gelidiella ligulata Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidiella. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1685) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1685 /organism="Gelidiella ligulata" /db_xref="taxon:82839" rRNA <1..>1685 /product="18S ribosomal RNA" BASE COUNT 407 a 356 c 486 g 436 t 1588 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-cguuucu ucggugg<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggaug-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-cuauc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cauua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggcg agg-ccuugg gag-ggcug- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.divari 3273 bp RNA RNA 09-MAR-1999 DEFINITION Gelidium divaricatum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium divaricatum. ORGANISM Gelidium divaricatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017662 LOCUS AB017662 1687 bp DNA PLN 09-MAR-1999 DEFINITION Gelidium divaricatum gene for 18S rRNA, partial sequence. ACCESSION AB017662 NID g4519630 VERSION AB017662.1 GI:4519630 KEYWORDS . SOURCE Gelidium divaricatum DNA. ORGANISM Gelidium divaricatum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1687) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1687 /organism="Gelidium divaricatum" /db_xref="taxon:37198" rRNA <1..>1687 /product="18S ribosomal RNA" BASE COUNT 402 a 360 c 494 g 431 t 1586 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.elegan 3273 bp RNA RNA 09-MAR-1999 DEFINITION Gelidium elegans.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium elegans. ORGANISM Gelidium elegans. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE from molecular analyses Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017670 LOCUS AB017670 1686 bp DNA PLN 09-MAR-1999 DEFINITION Gelidium elegans gene for 18S rRNA, partial sequence. ACCESSION AB017670 NID g4519638 VERSION AB017670.1 GI:4519638 KEYWORDS . SOURCE Gelidium elegans DNA. ORGANISM Gelidium elegans Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1686 /organism="Gelidium elegans" /db_xref="taxon:37200" rRNA <1..>1686 /product="18S ribosomal RNA" BASE COUNT 402 a 361 c 494 g 429 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-uG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGGA- Ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(uuA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCGGUg agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS O.sp.No103 3273 bp RNA RNA 09-MAR-1999 DEFINITION Onikusa sp. No103.. ACCESSION No information KEYWORDS No information. SOURCE Onikusa sp. No103. ORGANISM Onikusa sp. No103. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017668 LOCUS AB017668 1686 bp DNA PLN 09-MAR-1999 DEFINITION Onikusa sp. No103 gene for 18S rRNA, partial sequence. ACCESSION AB017668 NID g4519636 VERSION AB017668.1 GI:4519636 KEYWORDS . SOURCE Onikusa sp. No103 DNA. ORGANISM Onikusa sp. No103 Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Onikusa. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1686 /organism="Onikusa sp. No103" /db_xref="taxon:82838" rRNA <1..>1686 /product="18S ribosomal RNA" BASE COUNT 402 a 359 c 494 g 431 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-uG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGGA- Ucgggcg-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(uuA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCGGUg agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Yat.hirsut 3273 bp RNA RNA 09-MAR-1999 DEFINITION Yatabella hirsuta.. ACCESSION No information KEYWORDS No information. SOURCE Yatabella hirsuta. ORGANISM Yatabella hirsuta. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses Phylogenic affinities of morphologically unique genera JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017666 LOCUS AB017666 1686 bp DNA PLN 09-MAR-1999 DEFINITION Yatabella hirsuta gene for 18S rRNA, partial sequence. ACCESSION AB017666 NID g4519634 VERSION AB017666.1 GI:4519634 KEYWORDS . SOURCE Yatabella hirsuta DNA. ORGANISM Yatabella hirsuta Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Yatabella. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1686 /organism="Yatabella hirsuta" /db_xref="taxon:82846" rRNA <1..>1686 /product="18S ribosomal RNA" BASE COUNT 402 a 361 c 494 g 429 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-uG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGGA- Ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(uuA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCGGUg agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.pusi.4 3273 bp RNA RNA 09-MAR-1999 DEFINITION Gelidium pusillum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017663 LOCUS AB017663 1686 bp DNA PLN 09-MAR-1999 DEFINITION Gelidium pusillum gene for 18S rRNA, partial sequence. ACCESSION AB017663 NID g4519631 VERSION AB017663.1 GI:4519631 KEYWORDS . SOURCE Gelidium pusillum DNA. ORGANISM Gelidium pusillum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1686 /organism="Gelidium pusillum" /db_xref="taxon:31403" rRNA <1..>1686 /product="18S ribosomal RNA" BASE COUNT 404 a 361 c 492 g 429 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggaa- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uaa------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Oni.japoni 3273 bp RNA RNA 09-MAR-1999 DEFINITION Onikusa japonicum.. ACCESSION No information KEYWORDS No information. SOURCE Onikusa japonicum. ORGANISM Onikusa japonicum. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE from molecular analyses Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017667 LOCUS AB017667 1686 bp DNA PLN 09-MAR-1999 DEFINITION Onikusa japonicum gene for 18S rRNA, partial sequence. ACCESSION AB017667 NID g4519635 VERSION AB017667.1 GI:4519635 KEYWORDS . SOURCE Onikusa japonicum DNA. ORGANISM Onikusa japonicum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Onikusa. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1686 /organism="Onikusa japonicum" /db_xref="taxon:82836" rRNA <1..>1686 /product="18S ribosomal RNA" BASE COUNT 402 a 359 c 494 g 431 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-UUUGCUU |-U|CUGGGG -GGAGUAU-G GUC-GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pte.capi.4 3273 bp RNA RNA 09-MAR-1999 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE from molecular analyses Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017672 LOCUS AB017672 1689 bp DNA PLN 09-MAR-1999 DEFINITION Pterocladiella capillacea gene for 18S rRNA, partial sequence. ACCESSION AB017672 NID g4519640 VERSION AB017672.1 GI:4519640 KEYWORDS . SOURCE Pterocladiella capillacea DNA. ORGANISM Pterocladiella capillacea Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladiella. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1689) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1689 /organism="Pterocladiella capillacea" /db_xref="taxon:70838" rRNA <1..>1689 /product="18S ribosomal RNA" BASE COUNT 415 a 354 c 483 g 437 t 1584 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaaa-au- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ca| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Aca.japo.1 3273 bp RNA RNA 09-MAR-1999 DEFINITION Acanthopeltis japonica.. ACCESSION No information KEYWORDS No information. SOURCE Acanthopeltis japonica. ORGANISM Acanthopeltis japonica. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017664 LOCUS AB017664 1686 bp DNA PLN 09-MAR-1999 DEFINITION Acanthopeltis japonica gene for 18S rRNA, partial sequence. ACCESSION AB017664 NID g4519632 VERSION AB017664.1 GI:4519632 KEYWORDS . SOURCE Acanthopeltis japonica DNA. ORGANISM Acanthopeltis japonica Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Acanthopeltis. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1686 /organism="Acanthopeltis japonica" /db_xref="taxon:82843" rRNA <1..>1686 /product="18S ribosomal RNA" BASE COUNT 402 a 361 c 494 g 429 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaa--cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Aca.japo.2 3273 bp RNA RNA 09-MAR-1999 DEFINITION Acanthopeltis japonica.. ACCESSION No information KEYWORDS No information. SOURCE Acanthopeltis japonica. ORGANISM Acanthopeltis japonica. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017665 LOCUS AB017665 1686 bp DNA PLN 09-MAR-1999 DEFINITION Acanthopeltis japonica gene for 18S rRNA, partial sequence. ACCESSION AB017665 NID g4519633 VERSION AB017665.1 GI:4519633 KEYWORDS . SOURCE Acanthopeltis japonica DNA. ORGANISM Acanthopeltis japonica Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Acanthopeltis. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) FEATURES Location/Qualifiers source 1..1686 /organism="Acanthopeltis japonica" /db_xref="taxon:82843" rRNA <1..>1686 /product="18S ribosomal RNA" BASE COUNT 402 a 361 c 494 g 429 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaa--cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cap.implex 3273 bp RNA RNA 21-SEP-1998 DEFINITION Capreolia implexa.. ACCESSION No information KEYWORDS No information. SOURCE Capreolia implexa. ORGANISM Capreolia implexa. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60344 LOCUS CIU60344 1705 bp DNA PLN 21-SEP-1998 DEFINITION Capreolia implexa 18S ribosomal RNA gene, partial sequence. ACCESSION U60344 NID g1732124 KEYWORDS . SOURCE Capreolia implexa. ORGANISM Capreolia implexa Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Capreolia. REFERENCE 1 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1705 /organism="Capreolia implexa" /strain="Port Phillip Bay, Victoria, Australia" /db_xref="taxon:28865" rRNA <1..>1705 /product="18S ribosomal RNA" BASE COUNT 390 a 344 c 457 g 404 t 110 others BASE COUNT 390 a 344 c 457 g 404 t 1678 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCN|N -NNNNN-NN- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uaa------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucac~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.aceros 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidiella acerosa.. ACCESSION No information KEYWORDS No information. SOURCE Gelidiella acerosa. ORGANISM Gelidiella acerosa. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60342 LOCUS GAU60342 1703 bp DNA PLN 21-SEP-1998 DEFINITION Gelidiella acerosa 18S ribosomal RNA gene, partial sequence. ACCESSION U60342 NID g1732125 KEYWORDS . SOURCE Gelidiella acerosa. ORGANISM Gelidiella acerosa Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidiella. REFERENCE 1 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1703 /organism="Gelidiella acerosa" /strain="Oahu, Hawaii, USA" /db_xref="taxon:28867" rRNA <1..>1703 /product="18S ribosomal RNA" BASE COUNT 388 a 335 c 451 g 400 t 129 others BASE COUNT 388 a 335 c 451 g 400 t 1699 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-cguuucu ucggugg<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggaug-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-cuauc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G NNNCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(nn -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NNNNNN(NNN NNN)NNGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cauua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggcg agg-ccuugg gag-ggcug- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.americ 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium americanum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium americanum. ORGANISM Gelidium americanum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60347 LOCUS GAU60347 1706 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium americanum 18S ribosomal RNA gene, partial sequence. ACCESSION U60347 NID g1732126 KEYWORDS . SOURCE Gelidium americanum. ORGANISM Gelidium americanum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1706 /organism="Gelidium americanum" /strain="Radio Island, Carteret Co., NC., USA" /db_xref="taxon:28854" rRNA <1..>1706 /product="18S ribosomal RNA" BASE COUNT 361 a 333 c 438 g 382 t 192 others BASE COUNT 361 a 333 c 438 g 382 t 1759 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGNNN-N NNN(NNNN)N NNN-N-NNN- -NNNNNNNNN 2041 NNNN|NNNNN NNNNNNNNNN -NNNNNNN|N NNNNNNNNN| NNNNNNNNNN (NNNNNNNN) 2101 NNNN-NNNNN NNNNNNNNNN [nnn-nnnn- nnnnnnnnnn nnn-nnn(nn -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NNNUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.caulac 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium caulacantheum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium caulacantheum. ORGANISM Gelidium caulacantheum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60343 LOCUS GCU60343 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium caulacantheum 18S ribosomal RNA gene, partial sequence. ACCESSION U60343 NID g1732127 KEYWORDS . SOURCE Gelidium caulacantheum. ORGANISM Gelidium caulacantheum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium caulacantheum" /strain="Porirua Harbor, North Island, New Zealand" /db_xref="taxon:28016" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 385 a 343 c 461 g 405 t 110 others BASE COUNT 385 a 343 c 461 g 405 t 1679 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUNNN-NN- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC G-UUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcgggc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gannn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.florid 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium floridanum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium floridanum. ORGANISM Gelidium floridanum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60351 LOCUS GFU60351 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium floridanum 18S ribosomal RNA gene, partial sequence. ACCESSION U60351 NID g1732128 KEYWORDS . SOURCE Gelidium floridanum. ORGANISM Gelidium floridanum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium floridanum" /strain="Sebastian Inlet, FL, USA" /db_xref="taxon:28850" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 398 a 353 c 481 g 428 t 44 others BASE COUNT 398 a 353 c 481 g 428 t 1613 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAAAAG CA|GANNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcanncu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGNNN-N NNN(NNNN)N NNN-N-NNA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.lati.1 3273 bp RNA RNA 26-MAR-1997 DEFINITION Gelidium latifolium.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium. REFERENCE 1 (bases 1 to 1694) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) Nucleotide sequences of small-subunit and internal JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Y11953 LOCUS GLY11953 1720 bp DNA PLN 26-MAR-1997 DEFINITION G.latifolium 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene. ACCESSION Y11953 NID g1911111 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Gelidium latifolium" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 414 a 366 c 505 g 435 t BASE COUNT 414 a 366 c 505 g 435 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.lati.2 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium latifolium.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60350 LOCUS GLU60350 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium latifolium 18S ribosomal RNA gene, partial sequence. ACCESSION U60350 NID g1732129 KEYWORDS . SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium latifolium" /strain="Plouguerneau, Brittany, France" /db_xref="taxon:28851" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 385 a 341 c 459 g 392 t 127 others BASE COUNT 385 a 341 c 459 g 392 t 1696 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CAGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(nn -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NNNNNN(NNN NNN)NNNNNA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.pusi.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Gelidium pusillum. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U32564 LOCUS GPU32564 1769 bp DNA PLN 17-AUG-1995 DEFINITION Gelidium pusillum small-subunit ribosomal RNA, partial sequence. ACCESSION U32564 KEYWORDS . SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945171 FEATURES Location/Qualifiers source 1..1769 /organism="Gelidium pusillum" /isolate="G0159" rRNA <1..>1769 /product="small-subunit ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 426 a 378 c 518 g 447 t ORIGIN BASE COUNT 426 a 378 c 518 g 447 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Gel.pusi.2 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium pusillum. str. Fedje, Hordaland, Norway 18S ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. str. Fedje, Hordaland, Norway 18S ribosomal RNA gene, partial sequence. ORGANISM Gelidium pusillum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60352 LOCUS GPU60352 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium pusillum strain Fedje, Hordaland, Norway 18S ribosomal RNA gene, partial sequence. ACCESSION U60352 NID g1732130 KEYWORDS . SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium pusillum" /strain="Fedje, Hordaland, Norway" /db_xref="taxon:31403" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 386 a 348 c 476 g 423 t 71 others BASE COUNT 386 a 348 c 476 g 423 t 1640 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGNNNNN-N NNN(NNNN)N NNN-N-NNN- -NNNAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.pusi.3 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium pusillum. str. Masonboro Inlet, New Hanover Co., NC, USA 18S ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. str. Masonboro Inlet, New Hanover Co., NC, USA 18S ribosomal RNA gene, partial sequence. ORGANISM Gelidium pusillum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60355 LOCUS GPU60355 1705 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium pusillum strain Masonboro Inlet, New Hanover Co., NC, USA 18S ribosomal RNA gene, partial sequence. ACCESSION U60355 NID g1732131 KEYWORDS . SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1705 /organism="Gelidium pusillum" /strain="Masonboro Inlet, New Hanover Co., NC, USA" /db_xref="taxon:31403" rRNA <1..>1705 /product="18S ribosomal RNA" BASE COUNT 351 a 320 c 428 g 379 t 227 others BASE COUNT 351 a 320 c 428 g 379 t 1795 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GNNN)N NNN-N-NNN- -NNNNNNNNN 2041 NNNN|NNNNN NNNNNNNNNN -NNNNNNN|N NNNNNNNNN| NNNNNNNNNN (NNNNNNNN) 2101 NNNN-NNNNN NNNNNNNNNN [nnn-nnnn- nnnnnnnnnn nnn-nnn(nn -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGNGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUNGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.serrul 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium serrulatum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium serrulatum. ORGANISM Gelidium serrulatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60340 LOCUS GSU60340 1706 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium serrulatum 18S ribosomal RNA gene, partial sequence. ACCESSION U60340 NID g1732132 KEYWORDS . SOURCE Gelidium serrulatum. ORGANISM Gelidium serrulatum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1706 /organism="Gelidium serrulatum" /strain="Mochimo, Sucre, Venezuela" /db_xref="taxon:31405" rRNA <1..>1706 /product="18S ribosomal RNA" BASE COUNT 395 a 357 c 486 g 429 t 39 others BASE COUNT 395 a 357 c 486 g 429 t 1606 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.sesq.1 3273 bp RNA RNA 26-MAR-1997 DEFINITION Gelidium sesquipedale.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale. REFERENCE 1 (bases 1 to 1694) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE autonomy of some genera of the Gelidiales (Rhodophyta) Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Y11959 LOCUS GSY11959 1719 bp DNA PLN 26-MAR-1997 DEFINITION G.sesquipedale 18S rRNA gene. ACCESSION Y11959 NID g1911113 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1719) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1719) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1719 /organism="Gelidium sesquipedale" rRNA 1..1719 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 413 a 366 c 505 g 435 t BASE COUNT 413 a 366 c 505 g 435 t 1554 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCGUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 -GCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.sesq.2 3273 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium sesquipedale.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60354 LOCUS GSU60354 1699 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium sesquipedale 18S ribosomal RNA gene, partial sequence. ACCESSION U60354 NID g1732133 KEYWORDS . SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1699) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1699) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1699 /organism="Gelidium sesquipedale" /strain="Aramar, Asturias, Spain" /db_xref="taxon:31406" rRNA <1..>1699 /product="18S ribosomal RNA" BASE COUNT 400 a 355 c 481 g 426 t 37 others BASE COUNT 400 a 355 c 481 g 426 t 1611 others ORIGIN 1 |~~~~~~~~~ ~~~~~(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAAAAG CA|GANNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGNNN-N NNN(NNNN)N GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gel.vagu.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Gelidium vagum. ACCESSION No information KEYWORDS No information. SOURCE Gelidium vagum. ORGANISM Gelidium vagum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26190 LOCUS GEAFRA 1769 bp ds-DNA PLN 30-JUN-1994 DEFINITION Gelidium vagum DNA fragment. ACCESSION L26190 KEYWORDS PCR amplified. SOURCE Gelidium vagum DNA. ORGANISM Gelidium vagum Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Gelidiales; Gelidiaceae. REFERENCE 1 (bases 1 to 1769) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507243 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1743..1769 /note="putative" source 1..1769 /organism="Gelidium vagum" /sequenced_mol="DNA" BASE COUNT 426 a 379 c 517 g 447 t BASE COUNT 426 a 379 c 517 g 447 t 1504 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AC)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Gel.vagu.2 3273 bp RNA RNA 09-MAR-1999 DEFINITION Gelidium vagum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium vagum. ORGANISM Gelidium vagum. REFERENCE 1 (bases 1 to 1694) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses Phylogenic affinities of morphologically unique genera JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB017671 LOCUS AB017671 1686 bp DNA PLN 09-MAR-1999 DEFINITION Gelidium vagum gene for 18S rRNA, partial sequence. ACCESSION AB017671 NID g4519639 VERSION AB017671.1 GI:4519639 KEYWORDS . SOURCE Gelidium vagum DNA. ORGANISM Gelidium vagum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (sites) AUTHORS Shimada,S., Horiguchi,T. and Masuda,M. TITLE Phylogenic affinities of morphologically unique genera Acanthopeltis and Yatabella (Gelidiales, Rhodophyta) inferred from molecular analyses JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1686) AUTHORS Shimada,S. TITLE Direct Submission JOURNAL Submitted (16-SEP-1998) to the DDBJ/EMBL/GenBank databases. Satoshi Shimada, Hokkaido University, Division of Biological Sciences, Graduate School of Science; Kita10 Nishi8 Kita, Sapporo, Hokkaido 060-0810, Japan (E-mail:sshimada@sci.hokudai.ac.jp, Tel:81-11-706-2745, Fax:81-11-746-1512) BASE COUNT 401 a 361 c 494 g 430 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ucuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Oni.pristo 3273 bp RNA RNA 21-SEP-1998 DEFINITION Onikusa pristoides.. ACCESSION No information KEYWORDS No information. SOURCE Onikusa pristoides. ORGANISM Onikusa pristoides. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60353 LOCUS OPU60353 1703 bp DNA PLN 21-SEP-1998 DEFINITION Onikusa pristoides 18S ribosomal RNA gene, partial sequence. ACCESSION U60353 NID g1732134 KEYWORDS . SOURCE Onikusa pristoides. ORGANISM Onikusa pristoides Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Onikusa. REFERENCE 1 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1703 /organism="Onikusa pristoides" /strain="False Bay, Cape Peninsula, South Africa" /db_xref="taxon:28858" rRNA <1..>1703 /product="18S ribosomal RNA" BASE COUNT 390 a 346 c 475 g 417 t 75 others BASE COUNT 390 a 346 c 475 g 417 t 1645 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAAAAG NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN N|NNNNNN-N NNNN--NNNN NN|NUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcanncu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGNNN-N NUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 A-UG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gccuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-aga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ua uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pte.luci.1 3273 bp RNA RNA 26-MAR-1997 DEFINITION Pterocladia lucida.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida. REFERENCE 1 (bases 1 to 1694) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Y11958 LOCUS PLY11958 1720 bp DNA PLN 26-MAR-1997 DEFINITION P.lucida 18S rRNA gene. ACCESSION Y11958 NID g1911137 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Pterocladia lucida" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 423 a 358 c 495 g 444 t BASE COUNT 423 a 358 c 495 g 444 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaaa-au- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUGU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCUGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCCGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ca| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUU~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pte.luci.2 3273 bp RNA RNA 21-SEP-1998 DEFINITION Pterocladia lucida.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60349 LOCUS PLU60349 1704 bp DNA PLN 21-SEP-1998 DEFINITION Pterocladia lucida 18S ribosomal RNA gene, partial sequence. ACCESSION U60349 NID g1732136 KEYWORDS . SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Pterocladia lucida" /strain="Owhiro Bay, South Wellington, New Zealand" /db_xref="taxon:31408" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 349 a 314 c 415 g 383 t 243 others BASE COUNT 349 a 314 c 415 g 383 t 1812 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- NNN>NNNNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-ccgcc cggcanncu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGN -NNNNNNN-N NNN(NNNN)N NNN-N-NNN- -NNNNNNNNN 2041 NNNN|NNNNN NNNNNNNNNN -NNNNNNN|N NNNNNNNNN| NNNNNNNNNN (NNNNNNNN) 2101 NNNN-NNNNN NNNNNNNNNN [nnn-nnnn- nnnnnnnnnn nnn-nnn(nn -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-ug------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pte.capi.1 3273 bp RNA RNA 26-MAR-1997 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 1694) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) Nucleotide sequences of small-subunit and internal JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Y11957 LOCUS PCY11957 1720 bp DNA UNA 26-MAR-1997 DEFINITION P.capillacea 18S rRNA gene. ACCESSION Y11957 NID g1911134 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea Unclassified. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Pterocladiella capillacea" /isolate="Ireland" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 427 a 356 c 493 g 444 t BASE COUNT 427 a 356 c 493 g 444 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaaa-au- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-gc g-cu--(--- 1921 guuuuau--- -------)-- -gg--cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ca| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pte.capi.2 3273 bp RNA RNA 26-MAR-1997 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 1694) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE autonomy of some genera of the Gelidiales (Rhodophyta) Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Y11960 LOCUS PCY11960 1720 bp DNA UNA 26-MAR-1997 DEFINITION P.capillacea 18S rRNA gene. ACCESSION Y11960 NID g1911135 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea Unclassified. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Pterocladiella capillacea" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 427 a 358 c 491 g 444 t BASE COUNT 427 a 358 c 491 g 444 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaaa-au- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG--CCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ca| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pte.capi.3 3273 bp RNA RNA 21-SEP-1998 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60346 LOCUS PCU60346 1705 bp DNA PLN 21-SEP-1998 DEFINITION Pterocladiella capillacea 18S ribosomal RNA gene, partial sequence. ACCESSION U60346 NID g1732135 KEYWORDS . SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladiella. REFERENCE 1 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1705 /organism="Pterocladiella capillacea" /strain="LaJolla, San Diego Co., CA, USA" /db_xref="taxon:70838" rRNA <1..>1705 /product="18S ribosomal RNA" BASE COUNT 367 a 312 c 413 g 382 t 231 others BASE COUNT 367 a 312 c 413 g 382 t 1799 others ORIGIN 1 |~~~~~~~~~ ~~GGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaaa-au- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAAAAG CA|GANNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNNNNNNNNN A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAN-N NNN(NNNN)N NNN-N-NNN- -NNNNNNNNN 2041 NNNN|NNNNN NNNNNNNNNN -NNNNNNN|N NNNNNNNNN| NNNNNNNNNN (NNNNNNNN) 2101 NNNN-NNNNN NNNNNNNNNN [nnn-nnnn- nnnnnnnnnn nnn-nnn(nn -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ca| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pte.melano 3273 bp RNA RNA 21-SEP-1998 DEFINITION Pterocladiella melanoidea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella melanoidea. ORGANISM Pterocladiella melanoidea. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60341 LOCUS PMU60341 1702 bp DNA PLN 21-SEP-1998 DEFINITION Pterocladiella melanoidea 18S ribosomal RNA gene, partial sequence. ACCESSION U60341 NID g1732137 KEYWORDS . SOURCE Pterocladiella melanoidea. ORGANISM Pterocladiella melanoidea Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 1702) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1702) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1702 /organism="Pterocladiella melanoidea" /strain="Mallorca, Spain" /db_xref="taxon:28860" rRNA <1..>1702 /product="18S ribosomal RNA" BASE COUNT 397 a 337 c 454 g 401 t 113 others BASE COUNT 397 a 337 c 454 g 401 t 1684 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaaa-au- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CANNNN NN|NNNNN-N NN-NNNN-N( NNNNNNNNN- 1021 |NNNNNNN)N NNNN-N-|NN NNGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 guuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucunnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NNNNNN(NNN NNN)NNNNNN ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(ccuu u--------- 2401 ---------- ---------- -----)---g g-ua-g-ca| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(ucu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuua~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pti.pinnat 3273 bp RNA RNA 21-SEP-1998 DEFINITION Ptilophora pinnatifida.. ACCESSION No information KEYWORDS No information. SOURCE Ptilophora pinnatifida. ORGANISM Ptilophora pinnatifida. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60345 LOCUS PPU60345 1704 bp DNA PLN 21-SEP-1998 DEFINITION Ptilophora pinnatifida 18S ribosomal RNA gene, partial sequence. ACCESSION U60345 NID g1732138 KEYWORDS . SOURCE Ptilophora pinnatifida. ORGANISM Ptilophora pinnatifida Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Ptilophora. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Ptilophora pinnatifida" /strain="Palm Beach, Natal, South Africa" /db_xref="taxon:37204" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 406 a 365 c 495 g 436 t 2 others BASE COUNT 406 a 365 c 495 g 436 t 1571 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c c----(ccuu u-c------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug aag-ccuugg gag-ggcua- gu-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ua-ca -gac----ca uc-ug----- gcc-caaa|c uuggncaaac 3181 cuuanca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pti.subcos 3273 bp RNA RNA 21-SEP-1998 DEFINITION Ptilophora subcostata.. ACCESSION No information KEYWORDS No information. SOURCE Ptilophora subcostata. ORGANISM Ptilophora subcostata. REFERENCE 1 (bases 1 to 1694) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U60348 LOCUS PSU60348 1704 bp DNA PLN 21-SEP-1998 DEFINITION Ptilophora subcostata 18S ribosomal RNA gene, partial sequence. ACCESSION U60348 NID g1732139 KEYWORDS . SOURCE Ptilophora subcostata. ORGANISM Ptilophora subcostata Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Ptilophora. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Ptilophora subcostata" /strain="Katasehigashihama, Fujisawa, Kanagawa, Japan" /db_xref="taxon:37205" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 399 a 348 c 467 g 412 t 78 others BASE COUNT 399 a 348 c 467 g 412 t 1647 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-cu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -ANNNN-NN- NNN>NNNNAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -CCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-gc g-cu--(--- 1921 gcuuuau--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -nnnnn-n)n 2161 nnnnnnnnnn nnnnnnnn]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NNCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uguua-c c----(ccuu u-a------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 aggc(--gag a-)gcuuu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug aag-ccuugg gag-ggcua- gu-c-gga-u 3061 u-gug----- ---------- ---------- --(ucua--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuauca~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Gigart 3273 bp RNA RNA 24-JAN-191 DEFINITION Gigartinales. ACCESSION No information KEYWORDS No information. SOURCE Gigartinales. ORGANISM Gigartinales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Are.conges 3273 bp RNA RNA 24-JAN-191 DEFINITION Areschougia congesta. ACCESSION No information KEYWORDS No information. SOURCE Areschougia congesta. ORGANISM Areschougia congesta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09613 LOCUS ACU09613 1775 bp DNA PLN 07-DEC-1994 DEFINITION Areschougia congesta small-subunit rRNA gene. ACCESSION U09613 KEYWORDS ribosomal RNA small subunit. SOURCE Areschougia congesta. ORGANISM Areschougia congesta Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Areschougia. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595305 FEATURES Location/Qualifiers source 1..1775 /organism="Areschougia congesta" /isolate="VOUCHER GWS-G0006" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1775 /product="small-subunit rRNA" primer_bind complement(1748..1775) /note="PCR 3' end primer" BASE COUNT 426 a 379 c 533 g 436 t 1 others ORIGIN BASE COUNT 426 a 379 c 533 g 436 t 1499 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggrca-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gauua-c cu---(ucu- ---------- 2401 ---------- ---------- -----)--ag g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcacu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg ggg-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (6)-Dumont 3273 bp RNA RNA 24-JAN-191 DEFINITION Dumontiaceae. ACCESSION No information KEYWORDS No information. SOURCE Dumontiaceae. ORGANISM Dumontiaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Das.insign 3273 bp RNA RNA 24-JAN-191 DEFINITION Dasyphloea insignis. ACCESSION No information KEYWORDS No information. SOURCE Dasyphloea insignis. ORGANISM Dasyphloea insignis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09614 LOCUS DIU09614 1773 bp DNA PLN 07-DEC-1994 DEFINITION Dasyphloea insignis small-subunit rRNA gene. ACCESSION U09614 KEYWORDS ribosomal RNA small subunit. SOURCE Dasyphloea insignis. ORGANISM Dasyphloea insignis Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Dumontiaceae; Dasyphloea. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595306 FEATURES Location/Qualifiers source 1..1773 /organism="Dasyphloea insignis" /isolate="VOUCHER GWS-G0034" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1773 /product="small-subunit rRNA" primer_bind complement(1746..1773) /note="PCR 3' end primer" BASE COUNT 426 a 374 c 530 g 443 t ORIGIN BASE COUNT 426 a 374 c 530 g 443 t 1500 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucggaca-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cuguc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cacua-c u----(cauu g-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| c-ug------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-aga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----ug uc-ug----- gcc-ccaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Dil.califo 3273 bp RNA RNA 26-JUL-1996 DEFINITION Dilsea californica. ACCESSION No information KEYWORDS No information. SOURCE Dilsea californica. ORGANISM Dilsea californica. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33126 LOCUS DCU33126 1778 bp DNA PLN 28-JUL-1999 DEFINITION Dilsea californica 18S ribosomal RNA gene, complete sequence. ACCESSION U33126 NID g1463106 VERSION U33126.1 GI:1463106 KEYWORDS . SOURCE Dilsea californica. ORGANISM Dilsea californica Eukaryota; Rhodophyta; Florideophyceae; Gigartinales; Dumontiaceae; Dilsea. REFERENCE 1 (bases 1 to 1778) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1778) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1778 /organism="Dilsea californica" /isolate="G0159" /db_xref="taxon:31417" rRNA 1..1778 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1751..1778) /note="3' PCR primer" BASE COUNT 420 a 372 c 532 g 454 t BASE COUNT 420 a 372 c 532 g 454 t 1495 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCCA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucggaca-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cuguc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cacua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaug- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Far.mollis 3273 bp RNA RNA 26-JUL-1996 DEFINITION Farlowia mollis.. ACCESSION No information KEYWORDS No information. SOURCE Farlowia mollis. ORGANISM Farlowia mollis. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33129 LOCUS FMU33129 1776 bp DNA PLN 26-JUL-1996 DEFINITION Farlowia mollis 18S ribosomal RNA gene, complete sequence. ACCESSION U33129 NID g1463109 KEYWORDS . SOURCE Farlowia mollis. ORGANISM Farlowia mollis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Farlowia. REFERENCE 1 (bases 1 to 1776) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1776) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1776 /organism="Farlowia mollis" /note="isolate G0158" rRNA 1..1776 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1749..1776) /note="3' PCR primer" BASE COUNT 420 a 375 c 534 g 447 t BASE COUNT 420 a 375 c 534 g 447 t 1497 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCCA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucggaca-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cuguc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cacua-c ua---(auuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| cu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggauu- ga-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ug -gac----cg uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (6)-Endocl 3273 bp RNA RNA 24-JAN-191 DEFINITION Endocladiaceae. ACCESSION No information KEYWORDS No information. SOURCE Endocladiaceae. ORGANISM Endocladiaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS End.murica 3273 bp RNA RNA 26-JUL-1996 DEFINITION Endocladia muricata.. ACCESSION No information KEYWORDS No information. SOURCE Endocladia muricata. ORGANISM Endocladia muricata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33127 LOCUS EMU33127 1771 bp DNA PLN 26-JUL-1996 DEFINITION Endocladia muricata 18S ribosomal RNA gene, complete sequence. ACCESSION U33127 NID g1463107 KEYWORDS . SOURCE Endocladia muricata. ORGANISM Endocladia muricata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Endocladia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Endocladia muricata" /note="isolate G0155" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 425 a 372 c 529 g 445 t BASE COUNT 425 a 372 c 529 g 445 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaau-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCAG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcg-g- gacu--(--- 1921 auauuu---- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gauua-c c----(uuuu ---------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU A)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Gle.furcat 3273 bp RNA RNA 26-JUL-1996 DEFINITION Gleiopeltis furcata. subsp. misspelled Gloiopeltis furcata. ACCESSION No information KEYWORDS No information. SOURCE Gleiopeltis furcata. subsp. misspelled Gloiopeltis furcata. ORGANISM Gleiopeltis furcata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33130 LOCUS GFU33130 1773 bp DNA PLN 26-JUL-1996 DEFINITION Gloiopeltis furcata 18S ribosomal RNA gene, complete sequence. ACCESSION U33130 NID g1463110 KEYWORDS . SOURCE Gloiopeltis furcata. ORGANISM Gleiopeltis furcata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Gleiopeltis. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1773 /organism="Gleiopeltis furcata" /note="isolate G0163" rRNA 1..1773 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1749..1773) /note="3' PCR primer" BASE COUNT 421 a 376 c 536 g 440 t BASE COUNT 421 a 376 c 536 g 440 t 1500 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaau-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggcg-g- gacu--(--- 1921 guaauuu--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gauua-c c----(uuu- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU A)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- gu-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Car.phyllo 3273 bp RNA RNA 26-JUL-1996 DEFINITION Carpopeltis phyllophora.. ACCESSION No information KEYWORDS No information. SOURCE Carpopeltis phyllophora. ORGANISM Carpopeltis phyllophora. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33124 LOCUS CPU33124 1770 bp DNA PLN 26-JUL-1996 DEFINITION Carpopeltis phyllophora 18S ribosomal RNA gene, complete sequence. ACCESSION U33124 NID g1463103 KEYWORDS . SOURCE Carpopeltis phyllophora. ORGANISM Carpopeltis phyllophora Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Carpopeltis. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Carpopeltis phyllophora" /note="isolate G0069" rRNA 1..1770 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 435 a 371 c 514 g 450 t BASE COUNT 435 a 371 c 514 g 450 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ----ua-aa- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucgggcg-g- ggcu--(--- 1921 gu-uuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-gc-cuUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-agu-c 3061 g-gug----- ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- -----ca-ca -gau----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cal.rangif 3273 bp RNA RNA 26-JUL-1996 DEFINITION Callophyllis rangiferina.. ACCESSION No information KEYWORDS No information. SOURCE Callophyllis rangiferina. ORGANISM Callophyllis rangiferina. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33123 LOCUS CRU33123 1773 bp DNA PLN 26-JUL-1996 DEFINITION Callophyllis rangiferina 18S ribosomal RNA gene, complete sequence. ACCESSION U33123 NID g1463104 KEYWORDS . SOURCE Callophyllis rangiferina. ORGANISM Callophyllis rangiferina Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Kallymeniaceae; Callophyllis. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1773 /organism="Callophyllis rangiferina" /note="isolate G0078" rRNA 1..1773 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1746..1773) /note="3' PCR primer" BASE COUNT 422 a 378 c 525 g 448 t BASE COUNT 422 a 378 c 525 g 448 t 1500 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUCGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-GAGU|-- -----|---- ---(----)[ augagucg-a cg-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaau-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-A(- auu)UCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCCA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucggaca-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cuguc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-Aggu-gc --|cgcua-c c----(uuuu ---------- 2401 ---------- ---------- -----)---g g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -a-ac-cuUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gaa a-)gcgcc-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-g-gga-c 3061 u-gug----- ---------- ---------- --(auuu--- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cc uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cho.crispu 3273 bp RNA RNA 24-JAN-191 DEFINITION Chondrus crispus. ACCESSION No information KEYWORDS No information. SOURCE Chondrus crispus. ORGANISM Chondrus crispus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Z14140 ID CC18SRRNG standard; DNA; PLN; 1778 BP. XX AC Z14140; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE C.crispus gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Chondrus crispus OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Gigartinaceae. XX RN [1] RP 1-1778 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1778 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1778 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note= "PCR_primer" FT misc_feature 1752..1778 FT /note= "PRC_primer" /citation= ([1]) XX SQ Sequence 1778 BP; 437 A; 369 C; 521 G; 451 T; 0 other; BASE COUNT 437 a 369 c 521 g 451 t 1495 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAAG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GAGUGACGG 661 A|UCG-U(GG GU)GCGAGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aua)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggga-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cuacc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cagua-c cg---(uuuu u--------- 2401 ---------- ---------- -----)--ug g-ua-c-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAACU U)UCCC-UCU UGAACGAGGA ACACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaug- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -aac----ua uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGACAG-- ---AAUU~~~ ~~~~~~~~|| ||| // LOCUS Cry.undula 3273 bp RNA RNA 26-JUL-1996 DEFINITION Cryptonemia undulata.. ACCESSION No information KEYWORDS No information. SOURCE Cryptonemia undulata. ORGANISM Cryptonemia undulata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33125 LOCUS CUU33125 1769 bp DNA PLN 26-JUL-1996 DEFINITION Cryptonemia undulata 18S ribosomal RNA gene, complete sequence. ACCESSION U33125 NID g1463105 KEYWORDS . SOURCE Cryptonemia undulata. ORGANISM Cryptonemia undulata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Cryptonemia. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Cryptonemia undulata" /note="isolate G0081" rRNA 1..1769 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 436 a 373 c 511 g 449 t BASE COUNT 436 a 373 c 511 g 449 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ----ua-aa- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- agu)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucgggcg-g- ggcu--(--- 1921 gu-uuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-agu-c 3061 g-gug----- ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Epy.wilson 3273 bp RNA RNA 26-JUL-1996 DEFINITION Epymenia wilsonis.. ACCESSION No information KEYWORDS No information. SOURCE Epymenia wilsonis. ORGANISM Epymenia wilsonis. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33128 LOCUS EWU33128 1771 bp DNA PLN 26-JUL-1996 DEFINITION Epymenia wilsonis 18S ribosomal RNA gene, complete sequence. ACCESSION U33128 NID g1463108 KEYWORDS . SOURCE Epymenia wilsonis. ORGANISM Epymenia wilsonis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Epymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Epymenia wilsonis" /note="isolate G0130" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 434 a 375 c 512 g 450 t BASE COUNT 434 a 375 c 512 g 450 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagugc-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccaaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uu-ug----- gcc-caaa|c uuggccaagc 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Euc.dentic 3273 bp RNA RNA 24-JAN-191 DEFINITION Eucheuma denticulata. ACCESSION No information KEYWORDS No information. SOURCE Eucheuma denticulata. ORGANISM Eucheuma denticulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U25439 LOCUS KAU25439 1777 bp DNA PLN 06-JUN-1995 DEFINITION Eucheuma denticulata 18S ribosomal RNA gene, complete sequence. ACCESSION U25439 KEYWORDS . SOURCE Eucheuma denticulata. ORGANISM Eucheuma denticulata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Eucheuma. REFERENCE 1 (bases 1 to 1777) AUTHORS Lluisma,A.O. and Ragan,M.A. TITLE Relationships among Eucheuma denticulatum, Eucheuma isiforme, and Kappaphycus alvarezii (Gigartinales, Rhodophyta) based on nuclear ssu-rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1777) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (20-APR-1995) Mark A. Ragan, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada COMMENT NCBI gi: 847814 FEATURES Location/Qualifiers source 1..1777 /strain="brown form" /organism="Eucheuma denticulata" primer_bind 1..22 /note="forward PCR primer" /evidence=experimental rRNA 1..1777 /product="18S ribosomal RNA" primer_bind complement(1755..1777) /note="reverse PCR primer" /evidence=experimental BASE COUNT 424 a 382 c 534 g 437 t ORIGIN BASE COUNT 424 a 382 c 534 g 437 t 1496 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggugg<-- --uaaa-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-UCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-g- gacu--(--u 1921 gaauuuu--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAGGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGAc-gc --|gacua-c cg---(cuuu u--------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| g-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUAC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcu-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Euc.isifor 3273 bp RNA RNA 24-JAN-191 DEFINITION Eucheuma isiforme. ACCESSION No information KEYWORDS No information. SOURCE Eucheuma isiforme. ORGANISM Eucheuma isiforme. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U25438 LOCUS EIU25438 1781 bp DNA PLN 06-JUN-1995 DEFINITION Eucheuma isiforme 18S ribosomal RNA gene, complete sequence. ACCESSION U25438 KEYWORDS . SOURCE Eucheuma isiforme. ORGANISM Eucheuma isiforme Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Eucheuma. REFERENCE 1 (bases 1 to 1781) AUTHORS Lluisma,A.O. and Ragan,M.A. TITLE Relationships among Eucheuma denticulatum, Eucheuma isiforme, and Kappaphycus alvarezii (Gigartinales, Rhodophyta) based on nuclear ssu-rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1781) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (20-APR-1995) Mark A. Ragan, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada COMMENT NCBI gi: 847812 FEATURES Location/Qualifiers source 1..1781 /strain="typical form" /organism="Eucheuma isiforme" rRNA 1..1781 /product="18S ribosomal RNA" primer_bind 1..22 /note="forward PCR primer" /evidence=experimental primer_bind complement(1759..1781) /note="reverse PCR primer" /evidence=experimental BASE COUNT 425 a 377 c 534 g 445 t ORIGIN BASE COUNT 425 a 377 c 534 g 445 t 1492 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggugg<-- -uaaaa-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCGA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 GU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-g- gacu--(--u 1921 gaauuuu--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c ca---(cuuu u--------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| g-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuc---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcu-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Fur.lumbri 3273 bp RNA RNA 24-JAN-191 DEFINITION Furcellaria lumbricalis. ACCESSION No information KEYWORDS No information. SOURCE Furcellaria lumbricalis. ORGANISM Furcellaria lumbricalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Z14141 ID FL18SRRNG standard; DNA; PLN; 1774 BP. XX AC Z14141; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE F.lumbricalis gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Furcellaria lumbricalis OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Furcellariaceae. XX RN [1] RP 1-1774 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1774 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1774 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note= "PCR_primer" /citation= ([1]) FT misc_feature 1748..1774 FT /note= "PCR_primer" /citation= ([1]) XX SQ Sequence 1774 BP; 427 A; 375 C; 533 G; 439 T; 0 other; BASE COUNT 427 a 375 c 533 g 439 t 1499 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUUGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-GGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggca-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c c----(cuug u--------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg ggg-ggaug- aa-u-gga-c 3061 c-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uu-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG A-)CCUGCAG 3241 AAGGUCAG-- ---AAUU~~~ ~~~~~~~~|| ||| // LOCUS Gar.tuberi 3273 bp RNA RNA 24-JAN-191 DEFINITION Gardneriella tuberifera. ACCESSION No information KEYWORDS No information. SOURCE Gardneriella tuberifera. ORGANISM Gardneriella tuberifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43554 LOCUS GTU43554 1773 bp DNA PLN 25-JAN-1996 DEFINITION Gardneriella tuberifera small subunit rRNA gene, complete sequence. ACCESSION U43554 NID g1165233 KEYWORDS . SOURCE Gardneriella tuberifera. ORGANISM Gardneriella tuberifera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Gardneriella. REFERENCE 1 (bases 1 to 1773) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1773) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165233 FEATURES Location/Qualifiers source 1..1773 /organism="Gardneriella tuberifera" /isolate="Stillwater Cove, Monterey Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1773 /product="small subunit rRNA" primer_bind complement(1741..>1773) /note="PCR primer" BASE COUNT 423 a 381 c 529 g 440 t ORIGIN BASE COUNT 422 a 381 c 527 g 438 t 1505 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggugg<-- --uaaa-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUUUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGUAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GUU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAG-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UCCU -UGGA-U-UG 1741 U-CGG-AAG- --CAA-A-CG GCUGC(-GAA A)-C|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-g- gacuu-(--- 1921 gauuuuu--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUG--g cag---GCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGUGGGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c c----(ccuu a-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| g-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCACC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUa--- --------|| ||| // LOCUS Sar.crassi 3273 bp RNA RNA 07-DEC-1994 DEFINITION Sarcothalia crassifolia. ACCESSION No information KEYWORDS No information. SOURCE Sarcothalia crassifolia. ORGANISM Sarcothalia crassifolia. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09615 LOCUS SCU09615 1773 bp DNA PLN 27-OCT-1999 DEFINITION Sarcothalia crassifolia small-subunit ribosomal RNA gene, complete sequence. ACCESSION U09615 NID g595307 VERSION U09615.1 GI:595307 KEYWORDS ribosomal RNA small subunit. SOURCE Sarcothalia crassifolia. ORGANISM Sarcothalia crassifolia Eukaryota; Rhodophyta; Florideophyceae; Gigartinales; Gigartinaceae; Sarcothalia. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia FEATURES Location/Qualifiers source 1..1773 /organism="Sarcothalia crassifolia" /specimen_voucher="GWS-G0011" /db_xref="taxon:95361" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1773 /product="small-subunit ribosomal RNA" primer_bind complement(1746..1773) /note="PCR 3' end primer" BASE COUNT 435 a 373 c 517 g 448 t BASE COUNT 435 a 373 c 517 g 448 t 1500 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-A(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggua-g- gacu--(--- 1921 auauuuu--- -------)-- -ggc-cuacc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gagua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-c-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGUUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----uu uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Glo.frutic 3273 bp RNA RNA 26-JUL-1996 DEFINITION Gloioderma fruticulosa.. ACCESSION No information KEYWORDS No information. SOURCE Gloioderma fruticulosa. ORGANISM Gloioderma fruticulosa. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33131 LOCUS GFU33131 1767 bp DNA PLN 26-JUL-1996 DEFINITION Gloioderma fruticulosa 18S ribosomal RNA gene, complete sequence. ACCESSION U33131 NID g1463111 KEYWORDS . SOURCE Gloioderma fruticulosa. ORGANISM Gloioderma fruticulosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Gloioderma. REFERENCE 1 (bases 1 to 1767) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1767) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1767 /organism="Gloioderma fruticulosa" /note="isolate G0059" rRNA 1..1767 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1749..1767) /note="3' PCR primer" BASE COUNT 437 a 374 c 501 g 455 t BASE COUNT 437 a 374 c 501 g 455 t 1506 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-g uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugu<-- ---uaa-uu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGAGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>UAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucggacg-g- ggcu--(--- 1921 gu-uuuu--- -------)-- -ggc-ccguu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGu-uc --|cguua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| u-ag------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| au-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CC(--- ---------- ----GUCUA- 2641 )GGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-gguua- aa-c-gga-c 3061 u-gug----- ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ug cu-ua----- guc-ucaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Kap.alvare 3273 bp RNA RNA 24-JAN-191 DEFINITION Kappaphycus alvarezii. ACCESSION No information KEYWORDS No information. SOURCE Kappaphycus alvarezii. ORGANISM Kappaphycus alvarezii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U25437 LOCUS KAU25437 1767 bp DNA PLN 06-JUN-1995 DEFINITION Kappaphycus alvarezii 18S ribosomal RNA gene, complete sequence. ACCESSION U25437 KEYWORDS . SOURCE Kappaphycus alvarezii. ORGANISM Kappaphycus alvarezii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Kappaphycus. REFERENCE 1 (bases 1 to 1767) AUTHORS Lluisma,A.O. and Ragan,M.A. TITLE Relationships among Eucheuma denticulatum, Eucheuma isiforme, and Kappaphycus alvarezii (Gigartinales, Rhodophyta) based on nuclear ssu-rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1767) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (20-APR-1995) Mark A. Ragan, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada COMMENT NCBI gi: 847813 FEATURES Location/Qualifiers source 1..1767 /strain="brown form" /organism="Kappaphycus alvarezii" rRNA 1..1767 /product="18S ribosomal RNA" primer_bind 1..22 /note="forward PCR primer" /evidence=experimental primer_bind complement(1745..1767) /note="reverse PCR primer" /evidence=experimental BASE COUNT 425 a 377 c 531 g 434 t ORIGIN BASE COUNT 425 a 377 c 531 g 434 t 1506 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-g uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggugg<-- ---uaa-ua- c-u>ACU--G -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCAC-UC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-g- gaccu-(--- 1921 gaaauuu--- -------)-- -gcg-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| -CUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUUA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c cg---(cuuu u--------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -u-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)cggcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcu-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mas.stella 3273 bp RNA RNA 24-JAN-191 DEFINITION Mastocarpus stellatus. ACCESSION No information KEYWORDS No information. SOURCE Mastocarpus stellatus. ORGANISM Mastocarpus stellatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26195 LOCUS MSSFRA 1776 bp ds-DNA PLN 30-JUN-1994 DEFINITION Mastocarpus stellatus DNA fragment. ACCESSION L26195 KEYWORDS PCR amplified. SOURCE Mastocarpus stellatus DNA. ORGANISM Mastocarpus stellatus Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Gigartinales; Petrocelidaceae. REFERENCE 1 (bases 1 to 1776) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507283 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1749..1776 /standard_name="PCR primer" /note="putative" source 1..1776 /organism="Mastocarpus stellatus" /sequenced_mol="DNA" BASE COUNT 437 a 374 c 518 g 447 t ORIGIN BASE COUNT 437 a 374 c 518 g 447 t 1497 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUUGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaau-ga- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggua-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cuacc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-ga --|caaua-c cg---(uuuu u--------- 2401 ---------- ---------- -----)--ug g-ua-u-ug| c----c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-aug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg uc-ug----- gcc-ccaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAAU~~~ ~~~~~~~~|| ||| // LOCUS Myc.carnos 3273 bp RNA RNA 26-JUL-1996 DEFINITION Mychodea carnosa.. ACCESSION No information KEYWORDS No information. SOURCE Mychodea carnosa. ORGANISM Mychodea carnosa. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33135 LOCUS MCU33135 1774 bp DNA PLN 26-JUL-1996 DEFINITION Mychodea carnosa 18S ribosomal RNA gene, complete sequence. ACCESSION U33135 NID g1463115 KEYWORDS . SOURCE Mychodea carnosa. ORGANISM Mychodea carnosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Mychodea. REFERENCE 1 (bases 1 to 1774) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1774) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1774 /organism="Mychodea carnosa" /note="isolate G0123" rRNA 1..1774 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1747..1774) /note="3' PCR primer" BASE COUNT 427 a 377 c 528 g 442 t BASE COUNT 427 a 377 c 528 g 442 t 1499 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- acc)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggca-g- gacu--(--- 1921 uuauuuu--- -------)-- -ggc-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c u----(cuug u--------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg ggg-ggaaa- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -aac----cg uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Niz.austra 3273 bp RNA RNA 24-JAN-191 DEFINITION Nizymenia australis. ACCESSION No information KEYWORDS No information. SOURCE Nizymenia australis. ORGANISM Nizymenia australis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09616 LOCUS NAU09616 1775 bp DNA PLN 07-DEC-1994 DEFINITION Nizymenia australis small-subunit rRNA gene. ACCESSION U09616 KEYWORDS ribosomal RNA small subunit. SOURCE Nizymenia australis. ORGANISM Nizymenia australis Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Nizymeniaceae; Nizymenia. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595308 FEATURES Location/Qualifiers source 1..1775 /organism="Nizymenia australis" /isolate="VOUCHER GWS-G0004" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1775 /product="small-subunit rRNA" primer_bind complement(1748..1775) /note="PCR 3' end primer" BASE COUNT 423 a 384 c 540 g 428 t ORIGIN BASE COUNT 423 a 384 c 540 g 428 t 1498 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-g- gacu--(--- 1921 guaauuu--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|ggcua-c cg---(auuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| g-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gaa a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU A)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg ggg-ggcua- ga-c-gga-c 3061 u-gug----- ---------- ---------- --(cuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----ug uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Pha.pepero 3273 bp RNA RNA 24-JAN-191 DEFINITION Phacelocarpus peperocarpos. ACCESSION No information KEYWORDS No information. SOURCE Phacelocarpus peperocarpos. ORGANISM Phacelocarpus peperocarpos. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09617 LOCUS PPU09617 1776 bp DNA PLN 07-DEC-1994 DEFINITION Phacelocarpus peperocarpos small-subunit rRNA gene. ACCESSION U09617 KEYWORDS ribosomal RNA small subunit. SOURCE Phacelocarpus peperocarpos. ORGANISM Phacelocarpus peperocarpos Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Phacelocarpaceae; Phacelocarpus. REFERENCE 1 (bases 1 to 1776) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1776) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595309 FEATURES Location/Qualifiers source 1..1776 /organism="Phacelocarpus peperocarpos" /isolate="VOUCHER GWS-G0005" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1776 /product="small-subunit rRNA" primer_bind complement(1749..1776) /note="PCR 3' end primer" BASE COUNT 425 a 386 c 538 g 427 t ORIGIN BASE COUNT 425 a 386 c 538 g 427 t 1497 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(UAAAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-g- gacu--(--- 1921 guaauuu--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|ggcua-c cg---(cuuc ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gaa a-)gcacu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU A)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg ggg-ggcug- ga-c-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----ug uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sar.furcat 3273 bp RNA RNA 24-JAN-191 DEFINITION Sarcodiotheca furcata. ACCESSION No information KEYWORDS No information. SOURCE Sarcodiotheca furcata. ORGANISM Sarcodiotheca furcata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43553 LOCUS SFU43553 1777 bp DNA PLN 25-JAN-1996 DEFINITION Sarcodiotheca furcata small subunit rRNA gene, complete sequence. ACCESSION U43553 NID g1165236 KEYWORDS . SOURCE Sarcodiotheca furcata. ORGANISM Sarcodiotheca furcata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Sarcodiotheca. REFERENCE 1 (bases 1 to 1777) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1777) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165236 FEATURES Location/Qualifiers source 1..1777 /organism="Sarcodiotheca furcata" /isolate="San Juan Island, WA (Mosquito Pass)." primer_bind 1..22 /note="PCR primer" rRNA 1..1777 /product="small subunit rRNA" primer_bind complement(1745..>1777) /note="PCR primer" BASE COUNT 423 a 380 c 529 g 445 t ORIGIN BASE COUNT 422 a 380 c 527 g 443 t 1501 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggugg<-- --uaaa-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUUUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GUU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)-C|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-agga- ucgggca-g- gacu--(--u 1921 gauuuuu--- -------)-- -ggc-cugcc cggcacccu- uucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGGC| CGUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c c----(ccuu a-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| g-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCC-CGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)-cgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg uc-ug----- gcc-caaa|c uugguuaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUa--- --------|| ||| // LOCUS Sar.gaud.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Sarcodiotheca gaudichaudii. ACCESSION No information KEYWORDS No information. SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43550 LOCUS SGU43550 1780 bp DNA PLN 25-JAN-1996 DEFINITION Sarcodiotheca gaudichaudii small subunit rRNA gene, complete sequence. ACCESSION U43550 NID g1165237 KEYWORDS . SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Sarcodiotheca. REFERENCE 1 (bases 1 to 1780) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1780) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165237 FEATURES Location/Qualifiers source 1..1780 /organism="Sarcodiotheca gaudichaudii" /isolate="Stillwater Cove, Monterey Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1780 /product="small subunit rRNA" primer_bind complement(1748..>1780) /note="PCR primer" BASE COUNT 422 a 380 c 531 g 445 t 2 others ORIGIN BASE COUNT 421 a 380 c 529 g 443 t 1500 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggugg<-- --uaaa-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUUUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-a acg)GGNUUU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GUU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AGG- A-CAA-A-CG GCUGC(-GAA A)-C|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-g- gacu--(--u 1921 gauuuuu--- -------)-- -gcg-cugcc cggcacccu- cucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGGC| -CUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c c----(ccuu a-u------- 2401 ---------- ---------- -----)---g g-ua-g-un| g-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUC--CGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUa--- --------|| ||| // LOCUS Sar.gaud.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Sarcodiotheca gaudichaudii. ACCESSION No information KEYWORDS No information. SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33062 LOCUS SGU33062 1725 bp DNA PLN 20-SEP-1995 DEFINITION Sarcodiotheca gaudichaudii small subunit ribosomal RNA gene, complete sequence. ACCESSION U33062 KEYWORDS . SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Sarcodiotheca. REFERENCE 1 (bases 1 to 1725) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (02-AUG-1995) Lynda J. Goff, Earth and Marine Sciences, Biology, University of California, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 992652 FEATURES Location/Qualifiers source 1..1725 /organism="Sarcodiotheca gaudichaudii" /strain="Stillwater Cove, Monterey Co." rRNA 1..1725 /product="small subunit rRNA" BASE COUNT 408 a 369 c 515 g 431 t 2 others ORIGIN BASE COUNT 408 a 369 c 515 g 431 t 1550 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~GGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggugg<-- --uaaa-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUUUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-a acg)GGNUUU -U-CU-AAUU GGAAUGAGA| ACACG(G-UA 961 AACA)GUU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AGG- A-CAA-A-CG GCUGC(-GAA A)-C|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggca-g- gacu--(--u 1921 gauuuuu--- -------)-- -gcg-cugcc cggcacccu- cucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGGC| -CUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gacua-c c----(ccuu a-u------- 2401 ---------- ---------- -----)---g g-ua-g-un| g-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUC--CGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaaa- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CC~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Schi.dubyi 3273 bp RNA RNA 26-JUL-1996 DEFINITION Schizymenia dubyi.. ACCESSION No information KEYWORDS No information. SOURCE Schizymenia dubyi. ORGANISM Schizymenia dubyi. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33136 LOCUS SDU33136 1771 bp DNA PLN 26-JUL-1996 DEFINITION Schizymenia dubyi 18S ribosomal RNA gene, complete sequence. ACCESSION U33136 NID g1463116 KEYWORDS . SOURCE Schizymenia dubyi. ORGANISM Schizymenia dubyi Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Schizymeniaceae; Schizymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Schizymenia dubyi" /note="isolate G0041" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 437 a 366 c 517 g 451 t BASE COUNT 437 a 366 c 517 g 451 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ---uaa-ca- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|guuu cuga|UCUAU 601 CAACUAU--G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucggaug-g- gacu--(--- 1921 guuuuuu--- -------)-- -ggc-ccauc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGACAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cggua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-c-cg| a-gg-cu--- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GUCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gaa-ggcua- ga-u-agu-u 3061 u-gug----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uu-ug----- gcc-ccaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sch.nicaee 3273 bp RNA RNA 26-JUL-1996 DEFINITION Schottera nicaeensis.. ACCESSION No information KEYWORDS No information. SOURCE Schottera nicaeensis. ORGANISM Schottera nicaeensis. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33137 LOCUS SNU33137 1775 bp DNA PLN 26-JUL-1996 DEFINITION Schottera nicaeensis 18S ribosomal RNA gene, complete sequence. ACCESSION U33137 NID g1463118 KEYWORDS . SOURCE Schottera nicaeensis. ORGANISM Schottera nicaeensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Phyllophoraceae; Schottera. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1775 /organism="Schottera nicaeensis" /note="isolate G0077" rRNA 1..1775 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1748..1775) /note="3' PCR primer" BASE COUNT 434 a 374 c 524 g 443 t BASE COUNT 434 a 374 c 524 g 443 t 1498 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aac)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGga- ucgggua-g- gacu--(--- 1921 guauuuu--- -------)-- -ggc-cuacc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|gagua-c cg---(auuu ---------- 2401 ---------- ---------- -----)--ug g-ua-c-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GUCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggaua- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg uc-cg----- gcc-ccaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Seb.flabel 3273 bp RNA RNA 26-JUL-1996 DEFINITION Sebdenia flabellata.. ACCESSION No information KEYWORDS No information. SOURCE Sebdenia flabellata. ORGANISM Sebdenia flabellata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33138 LOCUS SFU33138 1768 bp DNA PLN 26-JUL-1996 DEFINITION Sebdenia flabellata 18S ribosomal RNA gene, complete sequence. ACCESSION U33138 NID g1463117 KEYWORDS . SOURCE Sebdenia flabellata. ORGANISM Sebdenia flabellata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Phyllophoraceae; Sebdenia. REFERENCE 1 (bases 1 to 1768) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1768) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Sebdenia flabellata" /note="isolate G0192" rRNA 1..1768 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1741..1768) /note="3' PCR primer" BASE COUNT 427 a 372 c 518 g 451 t BASE COUNT 427 a 372 c 518 g 451 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ug- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- acg)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucgggcg-g- ggcu--(--- 1921 gu-uuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuua ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-aga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uu-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sph.corono 3273 bp RNA RNA 24-JAN-191 DEFINITION Sphaerococcus coronopifolius. ACCESSION No information KEYWORDS No information. SOURCE Sphaerococcus coronopifolius. ORGANISM Sphaerococcus coronopifolius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09622 LOCUS SCU09622 1775 bp DNA PLN 07-DEC-1994 DEFINITION Sphaerococcus coronopifolius small-subunit rRNA gene. ACCESSION U09622 KEYWORDS ribosomal RNA small subunit. SOURCE Sphaerococcus coronopifolius. ORGANISM Sphaerococcus coronopifolius Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Sphaerococcaceae; Sphaerococcus. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595314 FEATURES Location/Qualifiers source 1..1775 /organism="Sphaerococcus coronopifolius" /isolate="VOUCHER GWS-G0089" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1775 /product="small-subunit rRNA" primer_bind complement(1748..1775) /note="PCR 3' end primer" BASE COUNT 421 a 380 c 536 g 438 t ORIGIN BASE COUNT 421 a 380 c 536 g 438 t 1498 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uaac-ga- c-u>ACUUGG -AUACCCGUA G(U-AACU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CG GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-ggga- ucgggcg-g- gacu--(--- 1921 guaauuu--- -------)-- -ggc-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cgcua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU A)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg ggg-ggaug- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Gracil 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilariales. ACCESSION No information KEYWORDS No information. SOURCE Gracilariales. ORGANISM Gracilariales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (6)-Gracil 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilariaceae. ACCESSION No information KEYWORDS No information. SOURCE Gracilariaceae. ORGANISM Gracilariaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Cur.flabel 3273 bp RNA RNA 31-JAN-1994 DEFINITION Curdiea flabellata. ACCESSION No information KEYWORDS No information. SOURCE Curdiea flabellata. ORGANISM Curdiea flabellata. REFERENCE 1 (bases 1 to 1694) AUTHORS Mark Ragan JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26207 LOCUS CDXFRA 1769 bp DNA PLN 31-JAN-1994 DEFINITION Curdiea flabellata DNA fragment. ACCESSION L26207 NID g431015 KEYWORDS PCR amplified. SOURCE Curdiea flabellata DNA. ORGANISM Curdiea flabellata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Curdiea. REFERENCE 1 (bases 1 to 1769) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1769 /organism="Curdiea flabellata" /db_xref="taxon:31476" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1743..1769 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 367 c 504 g 446 t BASE COUNT 452 a 367 c 504 g 446 t 1504 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ua acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucgguga<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UGG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGA-AGG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucggaug-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUCAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC |agg-acau- aguaaggauc gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGA|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gg --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a--a-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGA---- ---------- ----(----) [uc-aacggg 2761 -ugu------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- gu-u-gaa-c 3061 u-g------- ---------- ---------- --(uuuguc- -)-------- ---------- 3121 ---------- --------ca -gau----cg uc-ug----- gcu-ccaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.chilen 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria chilensis. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria chilensis. ORGANISM Gracilaria chilensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26217 LOCUS GRCFRE 1770 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria chilensis DNA fragment. ACCESSION L26217 NID g431025 KEYWORDS . SOURCE Gracilaria chilensis (individual_isolate ) DNA. ORGANISM Gracilaria chilensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Gracilaria chilensis" /isolate="New Zealand" /db_xref="taxon:2775" primer_bind 1..22 /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 444 a 369 c 503 g 454 t BASE COUNT 444 a 369 c 503 g 454 t 1503 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauuuau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-agcgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Gra.cornea 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilaria cornea. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria cornea. ORGANISM Gracilaria cornea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26212 LOCUS GRCFRA 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria cornea DNA fragment. ACCESSION L26212 NID g431028 KEYWORDS . SOURCE Gracilaria cornea DNA. ORGANISM Gracilaria cornea Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria cornea" /db_xref="taxon:31470" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /note="putative" BASE COUNT 445 a 370 c 503 g 453 t BASE COUNT 445 a 370 c 503 g 453 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AAAA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaaa- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCUGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUGG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- gg-c-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGACAA-- ---GCG~~~~ ~~~~~~~~|| ||| // LOCUS Gra.gra.Ar 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (Argentina) subsp. was Gracilaria verrucosa (Argentina). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (Argentina) subsp. was Gracilaria verrucosa (Argentina). ORGANISM Gracilaria gracilis (Argentina). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26205 LOCUS GRCFRB 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26205 NID g431022 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="Argentina" /db_xref="taxon:2777" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 451 a 366 c 499 g 455 t BASE COUNT 451 a 366 c 499 g 455 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Gra.gra.F3 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (France-3) subsp. was Gracilaria verrucosa (France-3). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (France-3) subsp. was Gracilaria verrucosa (France-3). ORGANISM Gracilaria gracilis (France-3). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26210 LOCUS GRCFRF 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26210 NID g431026 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="France-3" /db_xref="taxon:2777" primer_bind 1..22 /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 366 c 499 g 454 t BASE COUNT 452 a 366 c 499 g 454 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauc gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.gra.F5 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (France-5) subsp. was Gracilaria verrucosa (France-5). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (France-5) subsp. was Gracilaria verrucosa (France-5). ORGANISM Gracilaria gracilis (France-5). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26211 LOCUS GRCFRH 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26211 NID g432999 KEYWORDS PCR amplified. SOURCE Gracilaria verrucosa (individual_isolate France-5) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="France-5" /db_xref="taxon:2777" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 451 a 366 c 499 g 455 t BASE COUNT 451 a 366 c 499 g 455 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Gra.gra.J1 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (Japan-1) subsp. was Gracilaria verrucosa (Japan-1). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (Japan-1) subsp. was Gracilaria verrucosa (Japan-1). ORGANISM Gracilaria gracilis (Japan-1). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26213 LOCUS GRCFRD 1770 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26213 NID g431024 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Gracilaria verrucosa" /isolate="Japan (Hokkaido)" /db_xref="taxon:2777" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 365 c 498 g 455 t BASE COUNT 452 a 365 c 498 g 455 t 1503 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGU- 2941 ACGAC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gracil.sp. 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria sp.. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria sp. ORGANISM Gracilaria sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26216 LOCUS GRCFRHA 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria sp. DNA fragment. ACCESSION L26216 NID g433000 KEYWORDS PCR amplified. SOURCE Gracilaria sp. DNA. ORGANISM Gracilaria sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria sp." /db_xref="taxon:33673" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 454 a 366 c 498 g 453 t BASE COUNT 454 a 366 c 498 g 453 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.gra.No 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilaria gracilis (isolate Norway) subsp. was Gracilaria verrucosa (isolate Norway). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (isolate Norway) subsp. was Gracilaria verrucosa (isolate Norway). ORGANISM Gracilaria gracilis (isolate Norway). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M33638 LOCUS GCOADDA 1771 bp ds-DNA PLN 12-JUN-1990 DEFINITION G.verrucosa 18S ribosomal RNA gene. ACCESSION M33638 KEYWORDS 18S ribosomal RNA. SOURCE G.verrucosa (isolate Norway) male tetrasporangial DNA. ORGANISM Gracilaria verrucosa Eukaryota; Plantae; Thallobionta; Rhodophycota; Rhodophyceae; Florideophycideae; Gigartinales; Gracilariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Murphy,C.A., Rice,E.L. and Ragan,M.A. TITLE Nucleotide sequence of the 18S ribosomal RNA gene from the red alga Gracilaria verrucosa (Hudson) Papenfuss, Norway isolate JOURNAL Unpublished (1990) See COMMENT for author address STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by M.A.Ragan, 08-APR-1990. Atlantic Res. Lab., National Research Council of Canada, 1411 Oxford St., Halifax, Nova Scotia, CANADA B3H 3Z1 BASE COUNT 454 a 366 c 498 g 453 t ORIGIN BASE COUNT 454 a 366 c 498 g 453 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.gra.Wa 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (Wales) subsp. was Gracilaria verrucosa (Wales) . ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (Wales) subsp. was Gracilaria verrucosa (Wales) . ORGANISM Gracilaria gracilis (Wales). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26218 LOCUS GRCFRG 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26218 NID g431027 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="Wales" /db_xref="taxon:2777" primer_bind 1..22 /note="putative" primer_bind 1745..1771 /note="putative" BASE COUNT 452 a 365 c 499 g 455 t BASE COUNT 452 a 365 c 499 g 455 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GCCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-auau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.lema.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilaria lemaneiformis. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria lemaneiformis. ORGANISM Gracilaria lemaneiformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X54263 ID GLE16S standard; DNA; PLN; 1723 BP. XX AC X54263; XX DT 02-OCT-1990 (annotation) XX DE Gracilaria lemaneiformis partial 16S ribosomal RNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Gracilaria lemaneiformis OC Eukaryota; Planta; Rhodophyta. XX RN [1] (bases 1-1723) RA Bhattacharya D., Elwood H.J., Goff L.J., Sogin M.L.; RT "Phylogeny of Gracilaria Lemaneiformis (Rhodophyta) Based on RT Sequence Analysis of its Small Subunit Ribososmal RNA Coding RT Region"; RL J. Phycol. 26:181-186(1990). XX FH Key From To Description FH FT RRNA <1 >1723 16S rRNA XX XX SQ Sequence 1723 BP; 425 A; 359 C; 495 G; 441 T; 3 other; BASE COUNT 425 a 359 c 495 g 441 t 1553 others ORIGIN 1 |~~~~~nnnn nnnnn(nnn) nnnn|nnnnn nGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augagugu-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-CA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaca-a- gacu--(--- 1921 gauuuau--- -------)-- -ggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUR CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [cc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCG--UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcug- aa-u-gcg-c 3061 u-gu------ ---------- ---------- --(uau---- -)-------- ---------- 3121 ---------- ------a-cu cgaa----cu uu-ug----- gcu-ugaa|c cuggucaaac 3181 cyuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCnnnnn(nn nn)nnnnnnn 3241 nnnnnnnn-- ---nnn~~~~ ~~~~~~~~|| ||| // LOCUS Gra.lema.2 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria lemaneiformis (VI). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria lemaneiformis (VI). ORGANISM Gracilaria lemaneiformis (VI). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26214 LOCUS GROFRF 1773 bp DNA PLN 31-JAN-1994 DEFINITION Gracilariopsis lemaneiformis DNA fragment. ACCESSION L26214 NID g431031 KEYWORDS . SOURCE Gracilariopsis lemaneiformis (individual_isolate Vancouver Island, BC) DNA. ORGANISM Gracilariopsis lemaneiformis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariopsis. REFERENCE 1 (bases 1 to 1773) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1773 /organism="Gracilariopsis lemaneiformis" /isolate="Vancouver Island, BC" /db_xref="taxon:2782" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1747..1773 /standard_name="PCR primer" /note="putative" BASE COUNT 439 a 372 c 511 g 451 t BASE COUNT 439 a 372 c 511 g 451 t 1500 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augagugu-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-CA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaca-a- gacu--(--- 1921 gauuuau--- -------)-- -ggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [cc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcug- aa-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuac--- -)-------- ---------- 3121 ---------- ------u-ca -gaa----cu uu-ug----- gcu-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.pacifi 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria pacifica. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria pacifica. ORGANISM Gracilaria pacifica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26206 LOCUS GRCFRC 1770 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria pacifica DNA fragment. ACCESSION L26206 NID g431023 KEYWORDS . SOURCE Gracilaria pacifica (individual_isolate ) DNA. ORGANISM Gracilaria pacifica Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Gracilaria pacifica" /isolate="Bamfield, Vancouver Island, BC" /db_xref="taxon:31471" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 365 c 498 g 455 t BASE COUNT 452 a 365 c 498 g 455 t 1503 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GC-GUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.tikvah 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilaria tikvahiae McLachlan. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria tikvahiae McLachlan. ORGANISM Gracilaria tikvahiae McLachlan. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M33640 LOCUS GCOEARA 1771 bp ds-DNA PLN 12-JUN-1990 DEFINITION G.tikvahiae McLachlan 18S ribosomal RNA gene. ACCESSION M33640 KEYWORDS 18S ribosomal RNA. SOURCE G.tikvahiae McLachlan (isolate Pomquet Harbour-Nova Scotia) DNA. ORGANISM Gracilaria tikvahiae McLachlan Eukaryota; Plantae; Thallobionta; Rhodophycota; Rhodophyceae; Florideophycideae; Gigartinales; Gracilariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Liu,Q.-Y., Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Nucleotide sequence of the 18S ribosomal RNA gene from the red alga Gracilaria tikvahiae mclachlan JOURNAL Unpublished (1990) See COMMENT for author address STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by A.Ragan 08-APR-1990. Atlantic Research Lab, National Research Council of Canada, 1411 Oxford Street, Halifax, Nova Scotia CANADA B3H 3Z1 FEATURES from to/span description rRNA 1 1771 18S ribosomal RNA BASE COUNT 445 a 371 c 501 g 454 t ORIGIN BASE COUNT 445 a 371 c 501 g 454 t 1502 others ORIGIN 1 |~~~~~CCAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Gra.gra.gr 3273 bp RNA RNA 30-JUN-1994 DEFINITION Gracilaria gracilis. subsp. was Gracilaria verrucosa str. grass. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis. subsp. was Gracilaria verrucosa str. grass. ORGANISM Gracilaria gracilis. REFERENCE 1 (bases 1 to 1694) AUTHORS Bird,C.J., Ragan,M.A., Critchley,A.T., Rice,E.L. and Gutell,R.R. TITLE Further observations on some undetermined species Molecular relationships among the Gracilariaceae (Rhodophyta): JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26180 LOCUS GRCA 1777 bp DNA PLN 30-JUN-1994 DEFINITION Gracilaria verrucosa (strain grass) DNA. ACCESSION L26180 NID g507245 VERSION L26180.1 GI:507245 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate Namibia, strain grass) DNA. ORGANISM Gracilaria gracilis Eukaryota; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1777) AUTHORS Bird,C.J., Ragan,M.A., Critchley,A.T., Rice,E.L. and Gutell,R.R. TITLE Molecular relationships among the Gracilariaceae (Rhodophyta): Further observations on some undetermined species JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1777 /organism="Gracilaria gracilis" /isolate="Namibia" /strain="grass" /db_xref="taxon:2777" primer_bind 1..22 /note="putative" /label=PCR_primer primer_bind complement(1745..1777) /note="putative" /label=PCR_primer BASE COUNT 450 a 366 c 502 g 459 t 1496 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAG CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 CGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- -aguaguagu ~~~~~~~~|| ||| // LOCUS Gra.gra.mo 3273 bp RNA RNA 30-JUN-1994 DEFINITION Gracilaria gracilis subsp. was Gracilaria verrucosa str. moes. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis subsp. was Gracilaria verrucosa str. moes. ORGANISM Gracilaria gracilis. REFERENCE 1 (bases 1 to 1694) AUTHORS Bird,C.J., Ragan,M.A., Critchley,A.T., Rice,E.L. and Gutell,R.R. TITLE Further observations on some undetermined species Molecular relationships among the Gracilariaceae (Rhodophyta): JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26179 LOCUS GRCB 1777 bp DNA PLN 30-JUN-1994 DEFINITION Gracilaria verrucosa (strain moes) DNA. ACCESSION L26179 NID g507246 VERSION L26179.1 GI:507246 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate Namibia, strain moes) DNA. ORGANISM Gracilaria gracilis Eukaryota; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1777) AUTHORS Bird,C.J., Ragan,M.A., Critchley,A.T., Rice,E.L. and Gutell,R.R. TITLE Molecular relationships among the Gracilariaceae (Rhodophyta): Further observations on some undetermined species JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1777 /organism="Gracilaria gracilis" /isolate="Namibia" /strain="moes" /db_xref="taxon:2777" primer_bind 1..22 /note="putative" /label=PCR_primer primer_bind complement(1745..1777) /note="putative" /label=PCR_primer BASE COUNT 451 a 366 c 501 g 459 t 1496 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUUUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- ga-u-gaa-c 3061 u-ga------ ---------- ---------- --(uuau--- -)-------- ---------- 3121 ---------- ------u-ca -gau----cu uu-ug----- gcu-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- -aguaguagu ~~~~~~~~|| ||| // LOCUS Graci.NC.2 3273 bp RNA RNA 30-JUN-1994 DEFINITION Gracilariopsis sp.. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. ORGANISM Gracilariopsis sp. REFERENCE 1 (bases 1 to 1694) AUTHORS Bird,C.J., Ragan,M.A., Critchley,A.T., Rice,E.L. and Gutell,R.R. TITLE Further observations on some undetermined species Molecular relationships among the Gracilariaceae (Rhodophyta): JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26178 LOCUS GROA 1788 bp DNA PLN 30-JUN-1994 DEFINITION Gracilariopsis sp. DNA (1788 bp). ACCESSION L26178 NID g507247 VERSION L26178.1 GI:507247 KEYWORDS . SOURCE Gracilariopsis sp. (individual_isolate North Carolina) DNA. ORGANISM Gracilariopsis sp. Eukaryota; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariopsis. REFERENCE 1 (bases 1 to 1788) AUTHORS Bird,C.J., Ragan,M.A., Critchley,A.T., Rice,E.L. and Gutell,R.R. TITLE Molecular relationships among the Gracilariaceae (Rhodophyta): Further observations on some undetermined species JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1788 /organism="Gracilariopsis sp." /isolate="North Carolina" /db_xref="taxon:2783" primer_bind 1..22 /note="putative" /label=PCR_primer primer_bind complement(1756..1788) /note="putative" /label=PCR_primer BASE COUNT 446 a 371 c 519 g 452 t 1485 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUcguuuAa aG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augagaaaug uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCgG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(A-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaca-a- gacu--(--g 1921 aauuuau--- -------)-- -ggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c caa--(uuuu u--------- 2401 ---------- ---------- -----)-uug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACaG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCCCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGG---- ---------- ---------) [cc-aacgag 2761 -ugga----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuuuau- -)-------- ---------- 3121 ---------- ------g-ca -gac----cu uu-ug----- gcu-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- -aguaguagu ~~~~~~~~|| ||| // LOCUS Graci.Dors 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilariopsis sp. Dorset. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. Dorset. ORGANISM Gracilariopsis sp. Dorset. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26208 LOCUS GROFRCA 1782 bp DNA PLN 31-JAN-1994 DEFINITION Gracilariopsis sp. DNA fragment. ACCESSION L26208 NID g431029 KEYWORDS . SOURCE Gracilariopsis sp. (individual_isolate Dorset, UK) DNA. ORGANISM Gracilariopsis sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariopsis. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1782 /organism="Gracilariopsis sp." /isolate="Dorset, UK" /db_xref="taxon:2783" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1756..1782 /standard_name="PCR primer" /note="putative" BASE COUNT 441 a 375 c 516 g 450 t BASE COUNT 441 a 375 c 516 g 450 t 1491 others ORIGIN 1 |~~~~~CCAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augagugu-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCUG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAAUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG UUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(A-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggca-a- gacu--(--- 1921 gauuuau--- -------)-- -ggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCCUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c caa--(uuga g-u------- 2401 ---------- ---------- -----)-uug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| gu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGC---- ---------- ----(----) [cc-aacgag 2761 -ugga----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuuuac- -)-------- ---------- 3121 ---------- ------g-ca -gac----au uu-ug----- gcc-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG UA)CCUGCAG 3241 AAGGACAA-- ---GCG~~~~ ~~~~~~~~|| ||| // LOCUS Graci.Eng1 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilariopsis sp. England-1. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. England-1. ORGANISM Gracilariopsis sp. England-1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M33639 LOCUS GRO18SAA 1782 bp ds-DNA PLN 14-AUG-1990 DEFINITION Gracilariopsis sp. 18S ribosomal RNA gene. ACCESSION M33639 KEYWORDS 18S ribosomla RNA. SOURCE Gracilariopsis sp. (isolate England-1) diploid tetrasporophyte DNA. ORGANISM Gracilariopsis sp. Eukaryota; Plantae; Thallobionta; Rhodophycota; Rhodophyceae; Florideophycideae; Gracilariaceae; Gracilariaceae. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A., Liu,Q.Y. and Ragan,M.A. TITLE Nucleotide sequences of the 18S ribosomal RNA gene from the red algae Gracilara tikvahiae McLachlan, Gracilaria verrucosa (Hudson) Papenfuss and Gracilariopsis sp JOURNAL Nucleic Acids Res. 18, 4023-4024 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by M.A.Ragan, 08-APR-1990. BASE COUNT 443 a 372 c 515 g 452 t ORIGIN BASE COUNT 443 a 372 c 515 g 452 t 1491 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augagugu-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCUG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAAUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(A-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaca-a- gacu--(--- 1921 gauuuau--- -------)-- -ggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c caa--(uuga g-u------- 2401 ---------- ---------- -----)-uug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| gu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGC---- ---------- ----(----) [cc-aacgag 2761 -ugga----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuuuau- -)-------- ---------- 3121 ---------- ------g-ca -gac----au uu-ug----- gcc-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Graci.Eng2 3273 bp RNA RNA 31-JAN-1994 DEFINITION Gracilariopsis sp. England-2. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. England-2. ORGANISM Gracilariopsis sp. England-2. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26209 LOCUS GROFRD 1782 bp DNA PLN 31-JAN-1994 DEFINITION Gracilariopsis sp. DNA fragment. ACCESSION L26209 NID g431030 KEYWORDS . SOURCE Gracilariopsis sp. (individual_isolate England-2) DNA. ORGANISM Gracilariopsis sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariopsis. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1782 /organism="Gracilariopsis sp." /isolate="England-2" /db_xref="taxon:2783" primer_bind 1..22 /note="putative" primer_bind 1756..1782 /note="putative" BASE COUNT 443 a 373 c 516 g 450 t BASE COUNT 443 a 373 c 516 g 450 t 1491 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augagugu-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCUG UAAAAgcgcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAAUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(A-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggca-a- gacu--(--- 1921 gauuuau--- -------)-- -ggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c caa--(uuga g-u------- 2401 ---------- ---------- -----)-uug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| gu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGC---- ---------- ----(----) [cc-aacgag 2761 -ugga----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuuuac- -)-------- ---------- 3121 ---------- ------g-ca -gac----au uu-ug----- gcc-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Graci.NC.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilariopsis sp.. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. ORGANISM Gracilariopsis sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26256 LOCUS GRORGE 1782 bp ds-DNA PLN 30-NOV-1993 DEFINITION Gracilariopsis sp. 18S ribosomal gene. ACCESSION L26256 KEYWORDS 18S ribosomal RNA. SOURCE Gracilariopsis sp. (individual_isolate North Carolina, ) DNA. ORGANISM Gracilariopsis sp. Eukaryota; Rhodophycota; Rhodophyceae; Florideophycideae; Gracilariales; Gracilariaceae. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" rRNA 23..1755 /product="18S ribosomal RNA" primer_bind 1756..1782 /standard_name="PCR primer" /note="putative" source 1..1782 /organism="Gracilariopsis sp." /isolate="North Carolina" /sequenced_mol="DNA" BASE COUNT 443 a 372 c 515 g 452 t ORIGIN BASE COUNT 443 a 372 c 515 g 452 t 1491 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augagugu-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCUG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAAUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(A-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- C-AGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaca-a- gacu--(--- 1921 gauuuau--- -------)-- -ggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cguua-c caa--(uuga g-u------- 2401 ---------- ---------- -----)-uug g-ua-g-cg| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| gu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGC---- ---------- ----(----) [cc-aacgag 2761 -ugga----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuuuau- -)-------- ---------- 3121 ---------- ------g-ca -gac----au uu-ug----- gcc-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Gra.oryz.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilariophila oryzoides. ACCESSION No information KEYWORDS No information. SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43555 LOCUS GOU43555 1789 bp DNA PLN 25-JAN-1996 DEFINITION Gracilariophila oryzoides small subunit rRNA gene, complete sequence. ACCESSION U43555 NID g1165230 KEYWORDS . SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariophila. REFERENCE 1 (bases 1 to 1789) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1789) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165230 FEATURES Location/Qualifiers source 1..1789 /organism="Gracilariophila oryzoides" /isolate="Pigeon Point, San Mateo Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1789 /product="small subunit rRNA" primer_bind complement(1757..>1789) /note="PCR primer" BASE COUNT 442 a 371 c 522 g 454 t ORIGIN BASE COUNT 441 a 371 c 520 g 452 t 1489 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaggaa-g uu-------- 121 --uau-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACCCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAAUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-GGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUG-GA GG-GCCC(-- gau)GGGUUU -U-CC-AAUU GGAAUGAGA| ACAAG(A-UA 961 AAAA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaca-a- gacug-(--- 1921 -auuuua--- -------)-- uggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuuuaugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cgcua-c caaa-(uuuu a-c------- 2401 ---------- ---------- -----)uuug g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GU(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGC---- ---------- ----(----) [cc-aacgag 2761 -ugca----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCG--UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- --------ua cg-caga-ca uu-ug----u gcu-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUa--- --------|| ||| // LOCUS Gra.oryz.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilariophila oryzoides. ACCESSION No information KEYWORDS No information. SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43556 LOCUS GOU43556 1789 bp DNA PLN 25-JAN-1996 DEFINITION Gracilariophila oryzoides small subunit rRNA gene, complete sequence. ACCESSION U43556 NID g1165231 KEYWORDS . SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariophila. REFERENCE 1 (bases 1 to 1789) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1789) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165231 FEATURES Location/Qualifiers source 1..1789 /organism="Gracilariophila oryzoides" /isolate="Four Mile Beach, Santa Cruz Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1789 /product="small subunit rRNA" primer_bind complement(1757..>1789) /note="PCR primer" BASE COUNT 443 a 370 c 521 g 455 t ORIGIN BASE COUNT 442 a 370 c 519 g 453 t 1489 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaggaa-g uu-------- 121 --uau-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACCCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAAUGG)-C CU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUG-GA GG-GCCC(-- gau)GGGUUU -U-CC-AAUU GGAAUGAGA| ACAAG(A-UA 961 AAAA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaca-a- gacug-(--- 1921 -auuuua--- -------)-- uggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuuuaugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cgcua-c caaa-(uuuu a-c------- 2401 ---------- ---------- -----)uuug g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GU(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGC---- ---------- ----(----) [cc-aacgag 2761 -ugca----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCG--UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- --------ua cg-caga-ca uu-ug----u gcu-ugaa|c cuggucaaac 3181 cuuaucacuu agAGGAGGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUa--- --------|| ||| // LOCUS Gra.oryz.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Gracilariophila oryzoides. ACCESSION No information KEYWORDS No information. SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43557 LOCUS GOU43557 1788 bp DNA PLN 25-JAN-1996 DEFINITION Gracilariophila oryzoides small subunit rRNA gene, complete sequence. ACCESSION U43557 NID g1165232 KEYWORDS . SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariophila. REFERENCE 1 (bases 1 to 1788) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1788) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165232 FEATURES Location/Qualifiers source 1..1788 /organism="Gracilariophila oryzoides" /isolate="Stillwater Cove, Monterey Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1788 /product="small subunit rRNA" primer_bind complement(1756..>1788) /note="PCR primer" BASE COUNT 443 a 372 c 520 g 453 t ORIGIN BASE COUNT 442 a 372 c 518 g 451 t 1490 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UG-U-A-UAU GCUUGUCUAU AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaggaa-g uu-------- 121 --uau-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucggugc<-- --uaaa-ua- c-u>ACCCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAAUGG)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUG-GA GG-GCCC(-- gau)GGGUUU -U-CC-AAUU GGAAUGAGA| ACAAG(A-UA 961 AAAA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-CGG-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGGAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucagaca-a- gacug-(--- 1921 -auuuua--- -------)-- uggc-uuguu cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUGUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuuuaugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|cgcua-c caaa-(uuuu a-c------- 2401 ---------- ---------- -----)uuug g-ua-g-cg| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| uu-GC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GU(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGC---- ---------- ----(----) [cc-aacgag 2761 -ugca----- -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccgaaucuc- -caaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCG--UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-accug- ga-u-gcg-c 3061 u-gu------ ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- --------ua cg-caga-ca uu-ug----u gcu-ugaa|c cuggucaaac 3181 cuugucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUa--- --------|| ||| // LOCUS Mel.obtusa 3273 bp RNA RNA 31-JAN-1994 DEFINITION Melanthalia obtusata. ACCESSION No information KEYWORDS No information. SOURCE Melanthalia obtusata. ORGANISM Melanthalia obtusata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26215 LOCUS MLLFRB 1770 bp DNA PLN 31-JAN-1994 DEFINITION Melanthalia obtusata DNA fragment. ACCESSION L26215 NID g431104 KEYWORDS . SOURCE Melanthalia obtusata DNA. ORGANISM Melanthalia obtusata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Melanthalia. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Melanthalia obtusata" /db_xref="taxon:31474" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 454 a 366 c 500 g 450 t BASE COUNT 454 a 366 c 500 g 450 t 1503 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUAA AG|GACUAAG 61 CCAUGCAAGU GC-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuuaa ucgguga<-- --uaaa-cg- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|G G-UGG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| CGU-AUUUCG -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-CGA-AAG- A-CGA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggaua-a- gacu--(--- 1921 gauauau--- -------)-- -ggc-uuauc cggcauccu- -ucGA(-GAA A)UCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUCAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- aguaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gg --|cguua-c ua---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG UGG-GC(--- ---------- ----GUCUA- 2641 )GCCCACGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AACGGA---- ---------- ----(----) [uc-aacggg 2761 -ucu------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 uuc-guGAUG GGGAUCGACG GU(UGCAAUU U)UCCG-UCG UCAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-agcua- gu-u-gaa-c 3061 u-g------- ---------- ---------- --(uuuau-- -)-------- ---------- 3121 ---------- ------c-ca -gau----cu uc-ug----- gcu-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAG--UCA-- ---GAAUU~~ ~~~~~~~~|| ||| // LOCUS (5)-Halyme 3273 bp RNA RNA 24-JAN-191 DEFINITION Halymeniales. ACCESSION No information KEYWORDS No information. SOURCE Halymeniales. ORGANISM Halymeniales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (6)-Halyme 3273 bp RNA RNA 24-JAN-191 DEFINITION Halymeniaceae. ACCESSION No information KEYWORDS No information. SOURCE Halymeniaceae. ORGANISM Halymeniaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Gra.fili.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Grateloupia filicina. ACCESSION No information KEYWORDS No information. SOURCE Grateloupia filicina. ORGANISM Grateloupia filicina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26191 LOCUS GTEFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Grateloupia filicina DNA fragment. ACCESSION L26191 KEYWORDS PCR amplified. SOURCE Grateloupia filicina (strain luxurians) DNA. ORGANISM Grateloupia filicina Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Cryptonemiales; Halymeniaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507248 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" source 1..1771 /organism="Grateloupia filicina" /strain="luxurians" /sequenced_mol="DNA" BASE COUNT 435 a 375 c 515 g 446 t ORIGIN BASE COUNT 435 a 375 c 515 g 446 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ----ua-aa- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 GGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACGAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAGa- ucgggcg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggacu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG GU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-agu-c 3061 c-gug----- ---------- ---------- --(uuuuu-- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGACAG-- ---AUU~~~~ ~~~~~~~~|| ||| // LOCUS Gra.fili.2 3273 bp RNA RNA 26-JUL-1996 DEFINITION Grateloupia filicina.. ACCESSION No information KEYWORDS No information. SOURCE Grateloupia filicina. ORGANISM Grateloupia filicina. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33132 LOCUS GFU33132 1770 bp DNA PLN 26-JUL-1996 DEFINITION Grateloupia filicina 18S ribosomal RNA gene, complete sequence. ACCESSION U33132 NID g1463112 KEYWORDS . SOURCE Grateloupia filicina. ORGANISM Grateloupia filicina Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Grateloupia. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Grateloupia filicina" /note="isolate G0126" rRNA 1..1770 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 436 a 374 c 513 g 447 t BASE COUNT 436 a 374 c 513 g 447 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ----ua-aa- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAGa- ucgggcg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG GU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-agu-c 3061 c-gug----- ---------- ---------- --(uuuuu-- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Haly.plana 3273 bp RNA RNA 26-JUL-1996 DEFINITION Halymenia plana.. ACCESSION No information KEYWORDS No information. SOURCE Halymenia plana. ORGANISM Halymenia plana. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33133 LOCUS HPU33133 1770 bp DNA PLN 26-JUL-1996 DEFINITION Halymenia plana small-subunit ribosomal RNA gene, complete sequence. ACCESSION U33133 NID g1463113 KEYWORDS . SOURCE Halymenia plana. ORGANISM Halymenia plana Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Halymenia. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Halymenia plana" /note="isolate G0070" rRNA 1..1770 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 434 a 371 c 512 g 453 t BASE COUNT 434 a 371 c 512 g 453 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- ----ua-aa- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAGa- ucgggcg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c c----(ccuu u-u------- 2401 ---------- ---------- -----)---g g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcgcu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-agu-c 3061 g-gug----- ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- -----ca-ca -gau----ca uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (5)-Hilden 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandiales. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandiales. ORGANISM Hildenbrandiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (6)-Hilden 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandiaceae. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandiaceae. ORGANISM Hildenbrandiaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Apo.lyalli 3273 bp RNA RNA 14-SEP-1998 DEFINITION Apophlaea lyallii.. ACCESSION No information KEYWORDS No information. SOURCE Apophlaea lyallii. ORGANISM Apophlaea lyallii. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) Molecular systematic analyses indicate that the enigmatic JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF076996 LOCUS AF076996 1777 bp DNA PLN 14-SEP-1998 DEFINITION Apophlaea lyallii small subunit ribosomal RNA gene, complete sequence. ACCESSION AF076996 NID g3598964 KEYWORDS . SOURCE Apophlaea lyallii. ORGANISM Apophlaea lyallii Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Apophlaea. REFERENCE 1 (bases 1 to 1777) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1777) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (09-JUL-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1777 /organism="Apophlaea lyallii" /db_xref="taxon:79259" primer_bind 1..20 /note="Hild1" rRNA 21..1749 /note="nuclear SSU rRNA" /product="small subunit ribosomal RNA" primer_bind complement(1750..1777) /note="G07" BASE COUNT 440 a 371 c 513 g 453 t BASE COUNT 440 a 371 c 513 g 453 t 1496 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~G UCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaggaa-a uu-------- 121 ---uu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uacau-ua- c-u>AGACGG -AUAUCCCUG G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAACUACCC- AAUCCU-A(- acu)CAGGG- 781 A-GGU|G|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUG-GA GG-GGCC(-- auc)GGCUCU -U-CU-ACUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GA- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUGCA -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-UGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guauuu(--- 1921 -uuauau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-Agga-ga --|cuggu-g ca---(uuca ---------- 2401 ---------- ---------- -----)--ug u-ac-c-ug| c-uu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-uc-cuUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCAGU---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------ucug 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGA UGAGGAggug agg-acuugg gag-gugcu- cg-u-ucg-g 3061 a-cac----- ---------- ---------- --(uuucc-- -)-------- ---------- 3121 ---------- -----gu-gu -cug----ag cu-gg----- cgc-ugaa|c ucguucgaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.01 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L19345 LOCUS HLDRGEA 2283 bp ds-DNA PLN 05-AUG-1993 DEFINITION Hildenbrandia rubra 18S ribosomal RNA gene, complete exons. ACCESSION L19345 KEYWORDS 18S ribosomal RNA. SOURCE Hildenbrandia rubra vegetative DNA. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophycota; Rhodophyceae; Florideophycideae; Cryptonemiales; Hildenbrandiaceae. REFERENCE 1 (bases 1 to 2283) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L. and Singh,R.K. TITLE The nuclear 18S ribosomal RNA gene of the red alga Hildenbrandia rubra contains a group I intron JOURNAL Nucleic Acids Res. 21, 3898-3898 (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..22 /note="PCR amplification primer; putative" exon 23..1750 /product="18S ribosomal RNA" /note="putative" intron 1751..2252 /note="group I intron; putative" exon 2253..2256 /product="18S ribosomal RNA" /note="putative" primer_bind 2257..2281 /note="PCR amplification primer; putative" source 1..2283 /organism="Hildenbrandia rubra" /sequenced_mol="DNA" /tissue_type="vegetative" BASE COUNT 563 a 476 c 684 g 559 t 1 others ORIGIN HILDENBRANDIA RUBRA (including INTRON between asterisks) red algae sequence from M.Ragan. BASE COUNT 447 a 365 c 524 g 444 t 1493 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAG UCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucggggg<-- ---uaa-ua- c-u>AC-CGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---accccgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAY U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUCAUU| UGU-AUUAAG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG ACAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guauuu(--- 1921 --aaau---- -------)-a gggc-ucauc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAGUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGAG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGg-ga --|cuugu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-g-gg| c-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCUCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUG-CACUG AGCGGA---- ---------- ----(----) [cc-agcggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 agcc(--gaa a-)gguuu-u ccggacccu- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GAG( UCAUCAG)CU CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-aguugg gag-guguu- gg-u-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----gg cu-ag----- cgc-uaaa|c ucguucaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GAA~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.02 3273 bp RNA RNA 14-SEP-1998 DEFINITION Hildenbrandia rubra.. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF076995 LOCUS AF076995 2268 bp DNA PLN 14-SEP-1998 DEFINITION Hildenbrandia rubra small subunit ribosomal RNA gene, complete sequence. ACCESSION AF076995 NID g3598963 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 2268) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2268) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (09-JUL-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..2268 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" primer_bind 1..20 /note="Hild2" rRNA join(21..1724,2238..2241) /note="nuclear SSU rRNA" /product="small subunit ribosomal RNA" intron 1725..2237 /note="putative group I intron" primer_bind complement(2242..2268) /note="G07" BASE COUNT 577 a 481 c 658 g 551 t 1 others BASE COUNT 435 a 364 c 513 g 444 t 1517 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~CAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ augaggaa-a uu-------- 121 ---uu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uacac-ua- c-u>AGUCGG -AUAUCCCUA G(UAUAAU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCA|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGa-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-acuugg gag-gugcu- gg-u-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----ag cu-ag----- cgc-uaaa|c ucguucgaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.03 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: AK1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108399 LOCUS AF108399 1529 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108399 VERSION AF108399.1 GI:7021266 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1529) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1529) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1529 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="USA: Berner's Bay, Alaska" rRNA <1..>1529 /product="18S ribosomal RNA" BASE COUNT 370 a 310 c 465 g 384 t BASE COUNT 370 a 310 c 465 g 384 t 1744 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~u u--)------ 481 ---------- ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 acgcc--(-- cuugu---)- -g-gugGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUCAUU| UGU-AUUAAG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG ACAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(--u 1921 uaaauag--- -------)-- -ggc-ucauc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGAG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGg-ga --|cuugu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-g-gg| c-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCUCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-agcggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 agcc(--gaa a-)gguuu-u ccggacccu- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GAG( UCAUCAG)CU CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-aguugg gag-guguu- gg-u-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----gg cu-ag----- cgc-uaaa|c ucguucaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGU~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.04 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: BC1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108400 LOCUS AF108400 1660 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country Canada 18S ribosomal RNA gene, partial sequence. ACCESSION AF108400 VERSION AF108400.1 GI:7021267 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1660) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1660) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1660 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="Canada: Half Moon Bay, BC" rRNA <1..>1660 /product="18S ribosomal RNA" BASE COUNT 393 a 359 c 491 g 414 t 1616 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~a uu-------- 121 ----u-a-cc acgaua]--- --------|- --ACU|-GCG AAUGGCUCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uaaac-uu- c-u>AGUCGG -AUAUCCCUA G(A-AAAA)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGCCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UNCU-U-UG 1741 N-CGU-AGC- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG GCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGg-ga --|cuggu-g ca---(guuc ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c-uu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc--C-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GCCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gsa-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GAG( UCAUCAG)CU CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-acuugg aag-gugcu- gg-u-ucg-g 3061 g-gcc----- ---------- ---------- --(gcaa--- ---------- ---------- 3121 ---------- -----gguuu -cug----ag cu-ag----- cgc-uaaa|c ucguuc~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.05 3273 bp RNA RNA 04-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: CA1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108401 LOCUS AF108401 1678 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108401 VERSION AF108401.1 GI:7021268 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1678) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1678) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1678 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="USA: Brook's Island, San Francisco Bay, CA" rRNA <1..>1678 /product="18S ribosomal RNA" BASE COUNT 407 a 351 c 495 g 425 t 1595 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~CU|-GCG AAUGGCUCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uaaac-ua- c-u>AGUCGG -AUAUCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGCCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG GCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGg-ga --|cuagu-g ca---(uuuu ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-AC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GCCAGCGGA AGCCUCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------gucg 2881 cuc-gUGCUG GGAAUGAAGG C-(UGCAAUU G)UCCC-UCU UGAACGAG-A AUACCUUGUA 2941 GGCGU-AAG( UCAUCAG)CU CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggua gga--cuugg aag-gugcu- gg-u-uug-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----ag cu-ag----- cgc-uaaa|c ucguucgaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGU~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.06 3273 bp RNA RNA 23-FEB-2000 DEFINITION Hildenbrandia rubra.. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE morphometrics, rbcL and 18S rRNA gene sequence analyses Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from JOURNAL Eur. J. Phycol. 34, 523-532 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108406 LOCUS AF108406 1623 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country Costa Rica 18S ribosomal RNA gene, partial sequence. ACCESSION AF108406 NID g7021271 VERSION AF108406.1 GI:7021271 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1623) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1623) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1623 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="Costa Rica: Dominical" rRNA <1..>1623 /product="18S ribosomal RNA" BASE COUNT 399 a 334 c 456 g 420 t 14 others BASE COUNT 399 a 334 c 456 g 420 t 1664 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~u-a-cu acua-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAUAAcagua 181 au-aaucugu ucgguga<-- -uacauuua- ccu>AGUCGG -AUAUCCCUA G(G-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( GUCGUGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UU GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GGCC(-a uau)GGCUCU -U-CU-AGUU GGAAUGAGC| ACAGA(G-UA 961 AACA)AUU|U -AGCGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---UN GA|UNGU--- 1681 ------AUU| UGC-AUUAAG -NNN--NN-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-UAA-A-CU GUUGC(-GAA A)GC|GUCUG CAAA|G--AC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaga-aa gugc--(-uu 1921 auauuau--- -------)-- -ggc-uucuc cggcacccuc -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cag-acau- aggaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGg-gg --|ccgau-g cu---(auuu ug-------- 2401 ---------- ---------- -----)--ga --au-c-gg| u-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- -----uucc| cc-cC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-AC(--- ---------- ----GAUUUA 2641 )GCCAGCGGA AGUCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CAAUG AGUGGA---- ---------- ---------) [uc-aacggg 2761 -cua------ -|-------- ---------- ---------- ---------- |----gga-u 2821 aauc(--gaa a-)gguuu-u cccgacccu- -uaaa]---- ---------- ------aucu 2881 cuc-uUGCCG GGGAUGGAGG CU(UGCAAUU G)UCCAGUCC UGAACGAGGA AUACCUUGUA 2941 AGCGC-GGG( UCAUCAA)CU CGCGU-UGAA UACUU-CCCU GCCCUU|UGU ACACACCGUC 3001 CGUCGCUCCU ACCGAUCGUG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.07 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: CT1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108408 LOCUS AF108408 1656 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108408 VERSION AF108408.1 GI:7021272 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1656) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1656) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada BASE COUNT 400 a 341 c 488 g 427 t 1617 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~AUGGCCCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uacac-ua- c-u>AGUCGG -AUAUCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGU AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUG-A-|CU CGUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A UA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 agcc(--gaa a-)gguuu-u ccggacccu- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUCCCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-acuugg gag-gugcu- gg-c-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----ag cu-ag----- cgc-uaaa|c ucguucgaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGU~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.08 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: MA1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108409 LOCUS AF108409 1689 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108409 VERSION AF108409.1 GI:7021273 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1689) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1689) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1689 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="USA: Wood's Hole, MA" rRNA <1..>1689 /product="18S ribosomal RNA" BASE COUNT 417 a 351 c 485 g 433 t 1587 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~u-a-ca acga-a]--- --------|- --UCU|-GCG AAUUACUAAG UACC-cauua 181 auaaaucucu ucgguga<-- -uacac-ua- c-u>AGUCGG -AUAUCCCUA G(UAUAAU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GUgGA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG ACAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(--u 1921 uaaauau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGa-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cca------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug acu-ucuuag gag-uuguu- gg-u-ucg-g 3061 g-ccc----- ---------- ---------- --(aacau-- -)-------- ---------- 3121 ---------- -----guugu -auc----ag cu-ag----- cgc-uaua-g uyguuccauc 3181 aucaucauuu agAGGAAGAA GUAG-UCGU~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.09 3273 bp RNA RNA 23-FEB-2000 DEFINITION Hildenbrandia rubra.. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE morphometrics, rbcL and 18S rRNA gene sequence analyses Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from JOURNAL Eur. J. Phycol. 34, 523-532 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108410 LOCUS AF108410 1438 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country Mexico 18S ribosomal RNA gene, partial sequence. ACCESSION AF108410 NID g7021274 VERSION AF108410.1 GI:7021274 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1438) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1438) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1438 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="Mexico: La Bufadora, MEX" rRNA <1..>1438 /product="18S ribosomal RNA" BASE COUNT 341 a 302 c 425 g 370 t BASE COUNT 341 a 302 c 425 g 370 t 1835 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~u u--)------ 481 ---------- ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 acgcc--(-- cuugu---)- -g-gugGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- auu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGCCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG GCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agucaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGAG|--- ---------- 2341 ----(----- )[AGUAGUAG CU-Auuc-au a-|uuggu-g ca---(uuuu ---------- 2401 ---------- ---------- -----)--ug c-ac-g-gg| c-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| -c--C-CUUC 2581 CUACACU]-- -|-------- ----GGAUUG CUG-GC(--- ---------- ----GAAUA- 2641 )GCCAGCGGA AGCCUCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUU-CAUUG AGCGGA---- ---------- ----(----) [cc-accgcg 2761 auga------ -|-------- ---------- ---------- ---------- |----gca-u 2821 gccc(--gaa a-)gguuu-u ccggacccu- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGAAUGUAGG CU(UGCAAUU G)UCCC-UAU UGAUCAAGGA AUGCCGUGUA 2941 GGCGU-GAG( UCAUCAG)CU CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGCAggu~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.10 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: NF1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108411 LOCUS AF108411 1484 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country Canada 18S ribosomal RNA gene, partial sequence. ACCESSION AF108411 VERSION AF108411.1 GI:7021275 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1484) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1484) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1484 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="Canada: Cape Broyle, NF" rRNA <1..>1484 /product="18S ribosomal RNA" BASE COUNT 364 a 301 c 453 g 366 t 1789 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~~~(~~ ~~~~~~~~)~ ~~~~~~GCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUCAUU| UGU-AUUAAG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG ACAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(--u 1921 uaaauag--- -------)-- -ggc-ucauc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGAG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGg-ga --|cuugu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-g-gg| c-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCUCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [ccuaucggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 agcc(--gaa a-)gguuu-u ccggacccu- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GAG( UCAUCAG)CU CGCGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-aguugg gag-guguu- gg-u-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----gg cu-ag----- cgc-uaaa|c ucguucaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGU~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.11 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: NS1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108412 LOCUS AF108412 1710 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country Canada 18S ribosomal RNA gene, partial sequence. ACCESSION AF108412 VERSION AF108412.1 GI:7021276 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1710) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1710) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1710 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="Canada: Herring Cove Lookoff, Halifax, NS" rRNA <1..>1710 /product="18S ribosomal RNA" BASE COUNT 422 a 357 c 497 g 434 t 1563 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 CCAUGCAAGU GC-CAGU|-- -----|---- ---(----)[ augaguga-a u--------- 121 --------ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uacac-ua- c-u>AGUCGG -AUAUCCCUA G(UAUAaU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCAG -UCG--UC-A GA-G(GU-AA GA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGa-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--caa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GG-au-GAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU--AG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-acuugg aag-gugcu- gg-u-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----ag cu-ag----- cgc-uaaa|c ucguucgaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGU~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.12 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: OR1 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108413 LOCUS AF108413 1344 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108413 VERSION AF108413.1 GI:7021277 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1344) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1344) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1344 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="USA: Battlerock, OR" rRNA <1..>1344 /product="18S ribosomal RNA" BASE COUNT 332 a 280 c 403 g 329 t 1929 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~~~(~~ ~~~~~~~~)~ ~~~~~~GCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGUGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGCCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-CAA A)GC|GUCUG GCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(--- 1921 aaauuau--- -------)-- -ggc-u-uuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| g-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-CU-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GCCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 agcc(--gaa a-)ggcuu-u ccggacccu- -gaaa]---- ---------- ------accg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCC UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAC)CU CGCGC-GGAA UACGU-CCCU GCCC~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.13 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: OR2 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108414 LOCUS AF108414 1537 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia rubra country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108414 VERSION AF108414.1 GI:7021278 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1537) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1537) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1537 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /country="USA: Port of Port Orford, OR" rRNA <1..>1537 /product="18S ribosomal RNA" BASE COUNT 376 a 314 c 457 g 390 t 1736 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~u u--)------ 481 ---------- ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- cuugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G C-UUG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- ACUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUG-GG GG-GGCC(-- uuc)GGCUCU -U-CU-ACUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CCGU-U- 1681 GGGGCCAUU| UGU-AUUCCA -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-CG 1741 A-UGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG ACAA|G-GAC GUAUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(--- 1921 aaauuau--- -------)-- -ggc-uuuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| g-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-CU-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GCCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 agcc(--gaa a-)ggcuu-u ccggacccu- -gaaa]---- ---------- ------accg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCC UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAC)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAAGAggug aga-aguugg gag-gugcu- gg-c-uug-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggagu -uug----ag cu-ug----- cgc-ugaa|c ucguucaaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAGGUU~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.14 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208819 LOCUS AF208819 1494 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rubra Northern Ireland SW1 18S ribosomal RNA, partial sequence. ACCESSION AF208819 VERSION AF208819.1 GI:9836894 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1494) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1494) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1494 /organism="Hildenbrandia rubra" /specimen_voucher="Northern Ireland SW1" /db_xref="taxon:31481" /country="Ireland: Northern Ireland, Strangford Lough" rRNA <1..>1494 /product="18S ribosomal RNA" BASE COUNT 361 a 312 c 446 g 375 t BASE COUNT 361 a 312 c 446 g 375 t 1779 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~GA--UAA --GAG-acca a--------- -----acc-u ----(---uu cg-)----gg 481 guuu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 augcc--(-- cucgu---)- -g-gcgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGa-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccu 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug ag--gaccug gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----gg~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.15 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208820 LOCUS AF208820 1507 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rubra France SW1 18S ribosomal RNA, partial sequence. ACCESSION AF208820 VERSION AF208820.1 GI:9836895 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1507) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1507) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1507 /organism="Hildenbrandia rubra" /specimen_voucher="France SW1" /db_xref="taxon:31481" /country="France: Brest" rRNA <1..>1507 /product="18S ribosomal RNA" BASE COUNT 358 a 314 c 449 g 386 t BASE COUNT 358 a 314 c 449 g 386 t 1766 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~u u--)------ 481 ---------- ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- cuugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAGG-( GUAGUGU)-C CU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUGCU-A(- auu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AAUA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAA|A-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- guau--(--u 1921 uuuuuau--- -------)-- -ggc-cccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-g-ag| c--c------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GCCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------aucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 GGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-acuugg gag-guguu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ug----- cgc-uaaa|c ucguucgaac 3181 cuuaucau~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.16 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208821 LOCUS AF208821 1475 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rubra Netherlands SW1 18S ribosomal RNA, partial sequence. ACCESSION AF208821 VERSION AF208821.1 GI:9836896 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1475) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1475) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1475 /organism="Hildenbrandia rubra" /specimen_voucher="Netherlands SW1" /db_xref="taxon:31481" /country="Netherlands: Den Haag" rRNA <1..>1475 /product="18S ribosomal RNA" BASE COUNT 350 a 305 c 445 g 375 t BASE COUNT 350 a 305 c 445 g 375 t 1798 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ u--)------ 481 ---------- ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 augcc--(-- cuugu---)- -g-gcgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG ACAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c----u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-cuuugg gag-gugcu- gg-c-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.17 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208826 LOCUS AF208826 1470 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rubra Norway SW1 18S ribosomal RNA, partial sequence. ACCESSION AF208826 VERSION AF208826.1 GI:9836901 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1470) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1470) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1470 /organism="Hildenbrandia rubra" /specimen_voucher="Norway SW1" /db_xref="taxon:31481" /country="Norway: Oslo" rRNA <1..>1470 /product="18S ribosomal RNA" BASE COUNT 354 a 302 c 439 g 375 t BASE COUNT 354 a 302 c 439 g 375 t 1803 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~GA--UAA --GAG-acca a--------- -----acc-u ----(---uu cg-)----gg 481 guuu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 augcc--(-- cuugu---)- -g-gcgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c----u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-acuugg ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.18 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208828 LOCUS AF208828 1498 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rubra Sweden SW1 18S ribosomal RNA, partial sequence. ACCESSION AF208828 VERSION AF208828.1 GI:9836903 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1498) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1498) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1498 /organism="Hildenbrandia rubra" /specimen_voucher="Sweden SW1" /db_xref="taxon:31481" /country="Sweden: Eastern Asko, Stockholm Archipelago, outside Trosa" rRNA <1..>1498 /product="18S ribosomal RNA" BASE COUNT 354 a 309 c 454 g 381 t BASE COUNT 354 a 309 c 454 g 381 t 1775 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 augcc--(-- cuugu---)- -g-gcgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(GA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-A(- auu)CAGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGA| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -U-GA-U-UG 1741 A-CAG-AUG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAG|G-GAC AUUUUCAUUG 1801 AU|CA-AGAG CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GGC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggaag-a- guau--(-uu 1921 uuacuau--- -------)-- -ggc-ucuuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-c-gg| c----u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUUAG)CU UGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGGC 3001 CGUCGCUUCU ACCGAUUGGG UGAGGAggug agg-acuugg gag-gugcu- gg-c-ucg-g 3061 g-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----ag cu-ag----- cgc-uaaa|c ucguucgaac 3181 c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rub.19 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208831 LOCUS AF208831 1521 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rubra Wales SW3 18S ribosomal RNA, partial sequence. ACCESSION AF208831 VERSION AF208831.1 GI:9836906 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1521) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1521) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1521 /organism="Hildenbrandia rubra" /specimen_voucher="Wales SW3" /db_xref="taxon:31481" /country="United Kingdom: Wales, Llangranog" rRNA <1..>1521 /product="18S ribosomal RNA" BASE COUNT 361 a 319 c 449 g 392 t BASE COUNT 361 a 319 c 449 g 392 t 1752 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~u ugg-UGAUUC AUU-GCAA-U CUUU-C---| UGAUC-GC-- 541 acacc--(cu uuugu---)- -g-gugGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UU GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUACU-A(- auu)CAGUG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUG-GA GG-GGCC(-- auc)GGCUCU -U-CU-UGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 AGGGGCAUU| UGU-AUUGUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAC-AUG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG UCAG|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-aa gugu--(uuu 1921 uuuuuau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGa-ga --|cuugu-g ca---(uuuu ---------- 2401 ---------- ---------- -----)--ug c-ac-g-ag| cauuuuuaa- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gacc(--gaa a-)ggucu-u ccagacccc- -uaaa]---- ---------- ------aucg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-acuugg gag-gugcu- cg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggugu -cug----gg cu-ag----- cgc-ucaa|c ucguucgaac 3181 cuuaucguuu a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.ango.1 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia angolensis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: CR20 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108404 LOCUS AF108404 1601 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia angolensis country Costa Rica 18S ribosomal RNA gene, partial sequence. ACCESSION AF108404 VERSION AF108404.1 GI:7021270 KEYWORDS . SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1601) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1601) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1601 /organism="Hildenbrandia angolensis" /db_xref="taxon:108285" /country="Costa Rica: Rio Jaba" rRNA <1..>1601 /product="18S ribosomal RNA" BASE COUNT 388 a 338 c 475 g 400 t 1672 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~GAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|AGAA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAa 1081 guUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGACAU-| GGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-CAG- A-CAA-A-CA GAUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(auuu u--------- 2401 ---------- ---------- -----)--ug u-ac-c-ag| a-c------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-uc-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA GA~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.ango.2 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia angolensis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: PR19 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108415 LOCUS AF108415 1608 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia angolensis country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108415 VERSION AF108415.1 GI:7021279 KEYWORDS . SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1608) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1608) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1608 /organism="Hildenbrandia angolensis" /db_xref="taxon:108285" /country="USA: Puerto Rico" rRNA <1..>1608 /product="18S ribosomal RNA" BASE COUNT 404 a 340 c 463 g 400 t 1666 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~ca acga-a]--- --------|- --uCU|-GCG AAUGGCUCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uacau-ua- c-u>AGUCGG -AUAUCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gccccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAa 1081 guUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuaacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- aguagggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGAG|--- ---------- 2341 ----(----- )[CGUGGUAG CU-AGGc-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug c-ac-g-gg| c-uu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-uc-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGAC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.ango.3 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia angolensis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: SL9 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108416 LOCUS AF108416 1541 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia angolensis 18S ribosomal RNA gene, partial sequence. ACCESSION AF108416 VERSION AF108416.1 GI:7021280 KEYWORDS . SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1541) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1541) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1541 /organism="Hildenbrandia angolensis" /db_xref="taxon:108285" /note="St. Lucia" rRNA <1..>1541 /product="18S ribosomal RNA" BASE COUNT 374 a 320 c 457 g 390 t 1732 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~uu ---)------ 481 ---------- ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- uuuac---)- -g-augGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAa 1081 guUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GUU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g caa--(uuuu uuu------- 2401 ---------- ---------- -----)-uug u-ac-c-ag| g-a------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| uc-uc-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA ACAAG~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.ango.4 3273 bp RNA RNA 04-JAN-1999 DEFINITION Hildenbrandia angolensis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis. REFERENCE 1 (bases 1 to 1694) AUTHORS Alison Sherwood JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: TX7 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108417 LOCUS AF108417 1697 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia angolensis country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108417 VERSION AF108417.1 GI:7021281 KEYWORDS . SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1697) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1697) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1697 /organism="Hildenbrandia angolensis" /db_xref="taxon:108285" /country="USA: San Marcos R., TX" rRNA <1..>1697 /product="18S ribosomal RNA" BASE COUNT 418 a 357 c 491 g 431 t 1576 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~a uu-------- 121 --gau-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UACAAcagua 181 au-aaucucu ucgguga<-- -uacau-ua- c-u>AGUCGG -AUAUCCCUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-aa|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|AAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAa 1081 guUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CC-A|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g caa--(uuuu uuu------- 2401 ---------- ---------- -----)-uug u-cc-a-gg| a-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------u| cc-uu-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ca cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA GAAG-U~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.ango.5 3273 bp RNA RNA 23-FEB-2000 DEFINITION Hildenbrandia angolensis.. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis. REFERENCE 1 (bases 1 to 1694) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108418 LOCUS AF108418 1599 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia angolensis country USA 18S ribosomal RNA gene, partial sequence. ACCESSION AF108418 NID g7021282 VERSION AF108418.1 GI:7021282 KEYWORDS . SOURCE Hildenbrandia angolensis. ORGANISM Hildenbrandia angolensis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1599) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1599) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1599 /organism="Hildenbrandia angolensis" /db_xref="taxon:108285" /country="USA: Comal R., TX" rRNA <1..>1599 /product="18S ribosomal RNA" BASE COUNT 383 a 343 c 476 g 397 t BASE COUNT 383 a 343 c 476 g 397 t 1674 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~GAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGCCAUU| UGU-AUUCCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG -CAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g caa--(uuuu uuu------- 2401 ---------- ---------- -----)-uug u--c-c-ag| g-a------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-accggc 2761 -caa------ -|-------- ---------- ---------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug aga-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ca cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.occide 3273 bp RNA RNA 23-FEB-2000 DEFINITION Hildenbrandia occidentalis.. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia occidentalis. ORGANISM Hildenbrandia occidentalis. REFERENCE 1 (bases 1 to 1694) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses Biogeography and systematics of Hildenbrandia in North JOURNAL Eur. J. Phycol. 34, 523-532 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF108402 LOCUS AF108402 1532 bp DNA PLN 23-FEB-2000 DEFINITION Hildenbrandia occidentalis 18S ribosomal RNA gene, partial sequence. ACCESSION AF108402 NID g7021269 VERSION AF108402.1 GI:7021269 KEYWORDS . SOURCE Hildenbrandia occidentalis. ORGANISM Hildenbrandia occidentalis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1532) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia in North America (Rhodophyta, Hildenbrandiales): inferences from morphometrics, rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 34, 523-532 (1999) REFERENCE 2 (bases 1 to 1532) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1532 /organism="Hildenbrandia occidentalis" /db_xref="taxon:108286" /country="USA: Trinidad Harbour, CA" rRNA <1..>1532 /product="18S ribosomal RNA" BASE COUNT 371 a 311 c 458 g 392 t BASE COUNT 371 a 311 c 458 g 392 t 1741 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~u u--)------ 481 ---------- ---------u agg-UGAUUC AUU-ACAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-c uuugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCC-A(- acu)CGGGG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUUA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUUCG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 G-CGU-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- guau--(uga 1921 uu-acau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGg-ga --|cuggu-g ca---(uuua ---------- 2401 ---------- ---------- -----)--ug u-ac-c-ag| a-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-agcggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -gaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGC-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-acgugg gag-gugcu- ag-u-ucg-g 3061 a-cca----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ugugu -cug----ga uu-gg----- cgc-uaaa|c uuguucuaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGU~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.01 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208816 LOCUS AF208816 1532 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Austria 10 18S ribosomal RNA, partial sequence. ACCESSION AF208816 VERSION AF208816.1 GI:9836891 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1532) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1532) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1532 /organism="Hildenbrandia rivularis" /specimen_voucher="Austria 10" /db_xref="taxon:135206" /country="Austria: Unterer Seebach Lunz" rRNA <1..>1532 /product="18S ribosomal RNA" BASE COUNT 369 a 323 c 454 g 386 t BASE COUNT 369 a 323 c 454 g 386 t 1741 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~GA--UAA --GAG-acca a--------- -----acc-u c---(---uu cg-)---ggg 481 guuu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(auuu u--------- 2401 ---------- ---------- -----)--ug u-ac-c-ag| a-c------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg cag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cua~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.02 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208817 LOCUS AF208817 1584 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Austria 14 18S ribosomal RNA, partial sequence. ACCESSION AF208817 VERSION AF208817.1 GI:9836892 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1584) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1584) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1584 /organism="Hildenbrandia rivularis" /specimen_voucher="Austria 14" /db_xref="taxon:135206" /country="Austria: Senftengergeramt Rd. to Gfohl" rRNA <1..>1584 /product="18S ribosomal RNA" BASE COUNT 383 a 330 c 470 g 401 t BASE COUNT 383 a 330 c 470 g 401 t 1689 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~g(--- ---------- ---------- ---------c 361 uug------- ---------- ---------- -----)c--- -guggc-gug --|GUACUUG 421 UUAGA--UAA --GAG-acca a--------- -----acc-u c---(---uu cg-)---ggg 481 guuu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucgaaga-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA GAAG-UCGUA AC~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.03 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208818 LOCUS AF208818 1579 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Austria 15 18S ribosomal RNA, partial sequence. ACCESSION AF208818 VERSION AF208818.1 GI:9836893 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1579) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1579) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1579 /organism="Hildenbrandia rivularis" /specimen_voucher="Austria 15" /db_xref="taxon:135206" /country="Austria: Alte Fischa near Pottenbrunn" rRNA <1..>1579 /product="18S ribosomal RNA" BASE COUNT 382 a 329 c 468 g 400 t BASE COUNT 382 a 329 c 468 g 400 t 1694 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~gc--g(--- ---------- ---------- ---------c 361 uug------- ---------- ---------- -----)c--- -guggc-gug --|GUACUUG 421 UUAGA--UAA --GAG-acca a--------- -----acc-u c---(---uu cg-)---ggg 481 guuu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---AG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GG-a- ucgaaga-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA GAAG-U~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.04 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208822 LOCUS AF208822 1500 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis France 1 18S ribosomal RNA, partial sequence. ACCESSION AF208822 VERSION AF208822.1 GI:9836897 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1500) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1500) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1500 /organism="Hildenbrandia rivularis" /specimen_voucher="France 1" /db_xref="taxon:135206" /country="France: rivulet near Pt. Bareau" rRNA <1..>1500 /product="18S ribosomal RNA" BASE COUNT 357 a 316 c 448 g 379 t BASE COUNT 357 a 316 c 448 g 379 t 1773 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~ccc a--------- -----acc-u c---(---uu cg-)---ggg 481 guuu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.05 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208823 LOCUS AF208823 1512 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Germany 1 18S ribosomal RNA, partial sequence. ACCESSION AF208823 VERSION AF208823.1 GI:9836898 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1512) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1512) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1512 /organism="Hildenbrandia rivularis" /specimen_voucher="Germany 1" /db_xref="taxon:135206" /country="Germany: Hasselbach R. near Hoxter" rRNA <1..>1512 /product="18S ribosomal RNA" BASE COUNT 364 a 317 c 450 g 381 t BASE COUNT 364 a 317 c 450 g 381 t 1761 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 UUAGA--UAA --GAG-acca a--------- -----acc-u c---(---uu cg-)---ggg 481 guuu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg cag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.06 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208824 LOCUS AF208824 1512 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Ireland 11 18S ribosomal RNA, partial sequence. ACCESSION AF208824 VERSION AF208824.1 GI:9836899 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1512) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1512) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1512 /organism="Hildenbrandia rivularis" /specimen_voucher="Ireland 11" /db_xref="taxon:135206" /country="Ireland: Highway N18 at Gort R., Gort" rRNA <1..>1512 /product="18S ribosomal RNA" BASE COUNT 362 a 320 c 447 g 383 t BASE COUNT 362 a 320 c 447 g 383 t 1761 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~uu------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CCGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-A(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----gg cu-ag----- cgc-ugaa|c ucgu-cuaac 3181 cuuaucauuu a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.07 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208825 LOCUS AF208825 1502 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Italy 1 18S ribosomal RNA, partial sequence. ACCESSION AF208825 VERSION AF208825.1 GI:9836900 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1502) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1502) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1502 /organism="Hildenbrandia rivularis" /specimen_voucher="Italy 1" /db_xref="taxon:135206" /country="Italy: Serre Mountains, Calabria Region" rRNA <1..>1502 /product="18S ribosomal RNA" BASE COUNT 364 a 314 c 447 g 377 t BASE COUNT 364 a 314 c 447 g 377 t 1771 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~GA--UAA --GAG-acca a--------- -----acc-u c---(---uu cg-)---ggg 481 guua------ ---------u ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCCAUUGGG UGAGGAggug agg-accugg aag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.08 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208827 LOCUS AF208827 1457 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Spain 2 18S ribosomal RNA, partial sequence. ACCESSION AF208827 VERSION AF208827.1 GI:9836902 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1457) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1457) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1457 /organism="Hildenbrandia rivularis" /specimen_voucher="Spain 2" /db_xref="taxon:135206" /country="Spain: Riera Major" rRNA <1..>1457 /product="18S ribosomal RNA" BASE COUNT 351 a 307 c 439 g 360 t BASE COUNT 351 a 307 c 439 g 360 t 1816 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| UGAUC-GC-- 541 auguu--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.09 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208829 LOCUS AF208829 1527 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Wales 2 18S ribosomal RNA, partial sequence. ACCESSION AF208829 VERSION AF208829.1 GI:9836904 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1527) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1527) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1527 /organism="Hildenbrandia rivularis" /specimen_voucher="Wales 2" /db_xref="taxon:135206" /country="United Kingdom: Wales, Highway A4118 east of Parkmill" rRNA <1..>1527 /product="18S ribosomal RNA" BASE COUNT 369 a 319 c 455 g 384 t BASE COUNT 369 a 319 c 455 g 384 t 1746 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~uu ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA GAAG-UC~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.riv.10 3273 bp RNA RNA 24-JAN-191 DEFINITION Hildenbrandia rivularis. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF208830 LOCUS AF208830 1525 bp rRNA PLN 17-AUG-2000 DEFINITION Hildenbrandia rivularis Wales 3 18S ribosomal RNA, partial sequence. ACCESSION AF208830 VERSION AF208830.1 GI:9836905 KEYWORDS . SOURCE Hildenbrandia rivularis. ORGANISM Hildenbrandia rivularis Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 1525) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Biogeography and systematics of Hildenbrandia (Rhodophyta, Hildenbrandiales) in Europe: inferences from morphometrics and rbcL and 18S rRNA gene sequence analyses JOURNAL Eur. J. Phycol. 35, 143-152 (2000) REFERENCE 2 (bases 1 to 1525) AUTHORS Sherwood,A.R. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (29-NOV-1999) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1525 /organism="Hildenbrandia rivularis" /specimen_voucher="Wales 3" /db_xref="taxon:135206" /country="United Kingdom: Wales, Drefach" rRNA <1..>1525 /product="18S ribosomal RNA" BASE COUNT 369 a 318 c 455 g 383 t BASE COUNT 369 a 318 c 455 g 383 t 1748 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~uu ugg-UGAUUC AUU-GCAA-U UUUU-C---| UGAUC-GC-- 541 auguc--(-- ccugu---)- -g-acgGCGA C>-gcaccgu uu-ga|auuu cuga|CCUAU 601 CAAGUUUU-G AUGGUAAG-( AUAGAGU)-C UU-ACCAU|G C-UAG-UGAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUUGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGCU-A(- acu)CAGCG- 781 A-GGU|A|-G UGACAAAGAG U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-GGCC(-- auc)GGCUCU -U-CU-AGUU GGAAUGAGU| ACAGA(G-UA 961 AACA)AUU|U -AACGA-GG- ACC>AAUAGG AG|GGCAA-G CC-AAGU-G( CCAGCAGCC- 1021 |GCGGUAA)U ACUU-A-|CU CCUAGGGUGU U|UGUUCA-C AGUG--CUGC AG|UUAAAAA 1081 GUUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCUG -UCG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 A-CAG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUAAGAAC |UG|-GGGa- ucggagg-a- gugu--(uga 1921 uuuacau--- -------)-- -ggc-uccuc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUAGUAG CU-AGGc-ga --|cuggu-g ca---(-auu ---------- 2401 ---------- ---------- -----)--uu u-gu-a-cc| a-ga-c---- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- --------u| uc-UC-CUUC 2581 CUACACG]-- -|-------- -----GACUG CUG-GC(--- ---------- ----GAAUA- 2641 )GUCAGCGGA AGCCCCAGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGUGGA---- ---------- ----(----) [cc-accggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ggcc(--gaa a-)gguuu-u ccggacccc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGCUG GGGAUGGAGG CU(UGCAAUU G)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GAG( UCAUCAG)CU CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGGG UGAGGAggug agg-accugg gag-gugcu- gg-u-ucg-g 3061 a-ccc----- ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- -----ggcgu -cug----ga cu-ag----- cgc-ugaa|c ucguucuaac 3181 cuuaucauuu agAGGAAGGA GAAG~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Nemali 3273 bp RNA RNA 24-JAN-191 DEFINITION Nemaliales. ACCESSION No information KEYWORDS No information. SOURCE Nemaliales. ORGANISM Nemaliales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (6)-Galaxa 3273 bp RNA RNA 24-JAN-191 DEFINITION Galaxauraceae. ACCESSION No information KEYWORDS No information. SOURCE Galaxauraceae. ORGANISM Galaxauraceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Gal.margin 3273 bp RNA RNA 11-JUN-1997 DEFINITION Galaxaura marginata.. ACCESSION No information KEYWORDS No information. SOURCE Galaxaura marginata. ORGANISM Galaxaura marginata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Phylogenesis of pit-plug associated features in the Rhodophyta: inferences from molecular systematic data JOURNAL Can. J. Bot. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF006090 LOCUS AF006090 1772 bp DNA PLN 11-JUN-1997 DEFINITION Galaxaura marginata small-subunit ribosomal RNA gene, complete sequence. ACCESSION AF006090 NID g2183328 KEYWORDS . SOURCE Galaxaura marginata. ORGANISM Galaxaura marginata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodogorgonales; Galaxaura. REFERENCE 1 (bases 1 to 1772) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Phylogenesis of pit-plug associated features in the Rhodophyta: inferences from molecular systematic data JOURNAL Can. J. Bot. (1997) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (23-MAY-1997) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1772 /organism="Galaxaura marginata" primer_bind 1..20 rRNA 21..1744 /product="small-subunit ribosomal RNA" primer_bind complement(1744..1772) BASE COUNT 428 a 378 c 513 g 453 t BASE COUNT 428 a 378 c 513 g 453 t 1501 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- -uaucu-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|guuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGGa- ucgggcg-g- ggau--(--- 1921 cacgau---- -------)-- -gac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cguua-c -----(cuuu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cg| c-uu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gc-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 ucgc(--gag a-)gcgcu-u ccuaauccc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gau-uguug- cg-a-ucg-g 3061 u-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cg -cug----gc cg-ca----- aua-agaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS (6)-Liagor 3273 bp RNA RNA 24-JAN-191 DEFINITION Liagoraceae. ACCESSION No information KEYWORDS No information. SOURCE Liagoraceae. ORGANISM Liagoraceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 --.....-.. .......... .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Nem.helmin 3273 bp RNA RNA 30-JUN-1994 DEFINITION Nemalion helminthoides. ACCESSION No information KEYWORDS No information. SOURCE Nemalion helminthoides. ORGANISM Nemalion helminthoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26196 LOCUS NMLFRA 1769 bp DNA PLN 30-JUN-1994 DEFINITION Nemalion helminthoides DNA fragment. ACCESSION L26196 NID g507786 KEYWORDS PCR amplified. SOURCE Nemalion helminthoides DNA. ORGANISM Nemalion helminthoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Nemaliales; Liagoraceae; Nemalion. REFERENCE 1 (bases 1 to 1769) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1769 /organism="Nemalion helminthoides" /db_xref="taxon:35200" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1769 /standard_name="PCR primer" /note="putative" BASE COUNT 437 a 379 c 508 g 445 t BASE COUNT 437 a 379 c 508 g 445 t 1504 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|guuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGGa- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-Aggg-gc --|cguua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-cu-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gc-uC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA GGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGC ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug aga-auuugg gau-uguug- cg-a-ucg-g 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cg -cug----gc cg-ca----- aca-aaaa|c uuauucgaac 3181 cauaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---GA~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Palmar 3273 bp RNA RNA 24-JAN-191 DEFINITION Palmariales. ACCESSION No information KEYWORDS No information. SOURCE Palmariales. ORGANISM Palmariales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Hal.glandi 3273 bp RNA RNA 24-JAN-191 DEFINITION Halosaccion glandiforme. ACCESSION No information KEYWORDS No information. SOURCE Halosaccion glandiforme. ORGANISM Halosaccion glandiforme. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26193 HALOSACCION GLANDIFORME, red algae sequence from M.Ragan. LOCUS HCCFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Halosaccion glandiforme DNA fragment. ACCESSION L26193 KEYWORDS PCR amplified. SOURCE Halosaccion glandiforme DNA. ORGANISM Halosaccion glandiforme Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Palmariales; Palmariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507249 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" source 1..1771 /organism="Halosaccion glandiforme" /sequenced_mol="DNA" BASE COUNT 430 a 385 c 515 g 441 t BASE COUNT 430 a 385 c 515 g 441 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GC|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GAUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGGa- ucgggca-g- gcau--(--- 1921 --uacg---- -------)-a ugac-cuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-uu------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------c| gc-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAG-AUCA-- ---GAAU~~~ ~~~~~~~~|| ||| // LOCUS Mei.spetsb 3273 bp RNA RNA 24-JAN-191 DEFINITION Meiodiscus spetsbergensis. ACCESSION No information KEYWORDS No information. SOURCE Meiodiscus spetsbergensis. ORGANISM Meiodiscus spetsbergensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23814 LOCUS MSU23814 1771 bp DNA PLN 06-SEP-1995 DEFINITION Meiodiscus spetsbergensis 18S ribosomal RNA gene, complete sequence. ACCESSION U23814 KEYWORDS . SOURCE Meiodiscus spetsbergensis. ORGANISM Meiodiscus spetsbergensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Palmariales; Rhodophysemataceae; Meiodiscus. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975282 FEATURES Location/Qualifiers source 1..1771 /isolate="culture GWS9124" /organism="Meiodiscus spetsbergensis" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 425 a 385 c 520 g 441 t ORIGIN BASE COUNT 425 a 385 c 520 g 441 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GC|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GAUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGGa- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gu-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Pal.palmat 3273 bp RNA RNA 24-JAN-191 DEFINITION Palmaria palmata. ACCESSION No information KEYWORDS No information. SOURCE Palmaria palmata. ORGANISM Palmaria palmata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Z14142 ID PP18SRRNG standard; DNA; PLN; 1771 BP. XX AC Z14142; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE P.palmata gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Palmaria palmata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Palmariales; Palmariaceae. XX RN [1] RP 1-1771 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1771 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1771 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note= "PCR_primer" /citation= ([1]) FT misc_feature 1745..1771 FT /note= "PCR_primer" /citation= ([1]) XX SQ Sequence 1771 BP; 428 A; 385 C; 518 G; 440 T; 0 other; BASE COUNT 428 a 385 c 518 g 440 t 1502 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAGCGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GC|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GAUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGGa- ucgggca-g- gcau--(--- 1921 --uacg---- -------)-a ugac-cuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gc-cC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGA-CA-- ---GAAU~~~ ~~~~~~~~|| ||| // LOCUS Rho.elegan 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodophysema elegans. ACCESSION No information KEYWORDS No information. SOURCE Rhodophysema elegans. ORGANISM Rhodophysema elegans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23817 LOCUS REU23817 1771 bp DNA PLN 06-SEP-1995 DEFINITION Rhodophysema elegans 18S ribosomal RNA gene, complete sequence. ACCESSION U23817 KEYWORDS . SOURCE Rhodophysema elegans. ORGANISM Rhodophysema elegans Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Palmariales; Rhodophysemataceae; Rhodophysema. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975284 FEATURES Location/Qualifiers source 1..1771 /isolate="culture GWS1113" /organism="Rhodophysema elegans" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 428 a 383 c 516 g 444 t ORIGIN BASE COUNT 428 a 383 c 516 g 444 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUUCU-G(- aca)CAGAG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GC|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GAUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGGa- ucgggca-g- gcau--(--- 1921 --uacg---- -------)-a ugac-cuguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gc-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Rho.florid 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodothamniella floridula. ACCESSION No information KEYWORDS No information. SOURCE Rhodothamniella floridula. ORGANISM Rhodothamniella floridula. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23818 LOCUS RFU23818 1771 bp DNA PLN 06-SEP-1995 DEFINITION Rhodothamniella floridula 18S ribosomal RNA gene, complete sequence. ACCESSION U23818 KEYWORDS . SOURCE Rhodothamniella floridula. ORGANISM Rhodothamniella floridula Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Palmariales; Rhodothamniellaceae; Rhodothamniella. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975285 FEATURES Location/Qualifiers source 1..1771 /isolate="culture CCAP1360/6" /organism="Rhodothamniella floridula" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 426 a 384 c 517 g 444 t ORIGIN BASE COUNT 426 a 384 c 517 g 444 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ auaaguaa-u uu-------- 121 ---uu-a-cg acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugg<-- --uacc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aua)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCGU(-u uau)ACGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGAAC |UG|-GGGa- ucgggcg-g- gcau--(--- 1921 --uacg---- -------)-a ugac-ccguc cggaacccu- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGGg-gc --|cgcua-c -----(cauu g-u------- 2401 ---------- ---------- -----)---- g-ua-g-cu| g-uu-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| gc-UC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AGCGGA---- ---------- ----(----) [cc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 acgc(--gag a-)gcguu-u cccaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAG)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGAUCCggug agg-cuuugg gac-ugccg- cg-g-uug-a 3061 g-gcg----- ---------- ---------- --(uuca--- -)-------- ---------- 3121 ---------- -----cg-cc -cug----gc cg-ca----- gug-ggaa|c uuauccgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS (5)-Plocam 3273 bp RNA RNA 24-JAN-191 DEFINITION Plocamiales. ACCESSION No information KEYWORDS No information. SOURCE Plocamiales. ORGANISM Plocamiales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Plo.cart.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Plocamium cartilagineum. ACCESSION No information KEYWORDS No information. SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09619 LOCUS PCU09619 1768 bp DNA PLN 07-DEC-1994 DEFINITION Plocamium cartilagineum small-subunit rRNA gene. ACCESSION U09619 KEYWORDS ribosomal RNA small subunit. SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamium. REFERENCE 1 (bases 1 to 1768) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1768) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595311 FEATURES Location/Qualifiers source 1..1768 /organism="Plocamium cartilagineum" /isolate="VOUCHER GWS-G0002" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1768 /product="small-subunit rRNA" primer_bind complement(1741..1768) /note="PCR 3' end primer" BASE COUNT 444 a 365 c 504 g 455 t ORIGIN BASE COUNT 444 a 365 c 504 g 455 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugu<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GU- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAGa- ucgggug-a- gacu--(--- 1921 -guuuuu--- -------)-- -ggc-ucacc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uacua-c ca---(cua- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg ggg-ggcua- ga-u-gaa-c 3061 u-gug----- ---------- ---------- --(cua---- -)-------- ---------- 3121 ---------- -----ca-ca -gau----uu uc-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Plo.cart.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Plocamium cartilagineum. ACCESSION No information KEYWORDS No information. SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43551 LOCUS PCU43551 1776 bp DNA PLN 25-JAN-1996 DEFINITION Plocamium cartilagineum small subunit rRNA gene, complete sequence. ACCESSION U43551 NID g1165234 KEYWORDS . SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamium. REFERENCE 1 (bases 1 to 1776) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1776) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165234 FEATURES Location/Qualifiers source 1..1776 /organism="Plocamium cartilagineum" /isolate="Santa Cruz Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1776 /product="small subunit rRNA" primer_bind complement(1745..>1776) /note="PCR primer" BASE COUNT 447 a 364 c 506 g 459 t ORIGIN BASE COUNT 447 a 364 c 506 g 459 t 1497 others ORIGIN 1 |~~~~~CAAC CUGGU(-GA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugu<-- ----ua-ca- c-u>ACUCGG -AUAACCGUA G(U-AAAU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GU- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAGa- ucgggug-a- gacu--(--- 1921 -guuuuu--- -------)-- -ggc-ucacc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uacua-c ca---(cua- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-gaa-c 3061 u-gug----- ---------- ---------- --(cua---- -)-------- ---------- 3121 ---------- -----ca-ca -gau----uu uu-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUAGUA GU~~~~~~|| ||| // LOCUS Plo.pulv.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Plocamiocolax pulvinata. ACCESSION No information KEYWORDS No information. SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09618 LOCUS PPU09618 1771 bp DNA PLN 07-DEC-1994 DEFINITION Plocamiocolax pulvinata small-subunit rRNA gene. ACCESSION U09618 KEYWORDS ribosomal RNA small subunit. SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamiocolax. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595310 FEATURES Location/Qualifiers source 1..1771 /organism="Plocamiocolax pulvinata" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1771 /product="small-subunit rRNA" primer_bind complement(1744..1771) /note="PCR 3' end primer" BASE COUNT 446 a 365 c 504 g 456 t ORIGIN BASE COUNT 446 a 365 c 504 g 456 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugu<-- ----ua-ca- c-u>AC-CGG -AUAACCGUA G(U-AAAU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-AUCAU|G G-UCG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GU- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAGa- ucgggug-a- gacu--(--- 1921 -guuuuu--- -------)-- -ggc-ucacc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uacua-c ca---(cua- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-gaa-c 3061 u-gug----- ---------- ---------- --(cua---- -)-------- ---------- 3121 ---------- -----ca-ca -gau----uu uu-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Plo.pulv.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Plocamiocolax pulvinata. ACCESSION No information KEYWORDS No information. SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U43552 LOCUS PPU43552 1777 bp DNA PLN 25-JAN-1996 DEFINITION Plocamiocolax pulvinata small subunit rRNA gene, complete sequence. ACCESSION U43552 NID g1165235 KEYWORDS . SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamiocolax. REFERENCE 1 (bases 1 to 1777) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1777) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165235 FEATURES Location/Qualifiers source 1..1777 /organism="Plocamiocolax pulvinata" /isolate="Santa Cruz Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1777 /product="small subunit rRNA" primer_bind complement(1745..>1777) /note="PCR primer" BASE COUNT 448 a 364 c 506 g 459 t ORIGIN BASE COUNT 448 a 364 c 506 g 459 t 1496 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-u uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgaugu<-- ----ua-ca- c-u>ACUCGG -AUAACCGUA G(U-AAAU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GU- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGGCAUU| UGU-AUUCCG -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 G-CGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAGa- ucgggug-a- gacu--(--- 1921 -guuuuu--- -------)-- -ggc-ucacc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAG CU-AGGc-gc --|uacua-c ca---(cua- ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ua| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-gaa-c 3061 u-gug----- ---------- ---------- --(cua---- -)-------- ---------- 3121 ---------- -----ca-ca -gau----uu uu-ug----- gcc-cgaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCU-- ---AGUAGUA GU~~~~~~|| ||| // LOCUS (5)-Rhodog 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodogorgonales. ACCESSION No information KEYWORDS No information. SOURCE Rhodogorgonales. ORGANISM Rhodogorgonales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Rho.carrie 3273 bp RNA RNA 11-JUN-1997 DEFINITION Rhodogorgon carriebowensis.. ACCESSION No information KEYWORDS No information. SOURCE Rhodogorgon carriebowensis. ORGANISM Rhodogorgon carriebowensis. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Phylogenesis of pit-plug associated features in the Rhodophyta: inferences from molecular systematic data JOURNAL Can. J. Bot. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF006089 LOCUS AF006089 1841 bp DNA PLN 11-JUN-1997 DEFINITION Rhodogorgon carriebowensis small-subunit ribosomal RNA gene, complete sequence. ACCESSION AF006089 NID g2183327 KEYWORDS . SOURCE Rhodogorgon carriebowensis. ORGANISM Rhodogorgon carriebowensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodogorgonales; Rhodogorgonaceae; Rhodogorgon. REFERENCE 1 (bases 1 to 1841) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Phylogenesis of pit-plug associated features in the Rhodophyta: inferences from molecular systematic data JOURNAL Can. J. Bot. (1997) In press REFERENCE 2 (bases 1 to 1841) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (23-MAY-1997) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1841 /organism="Rhodogorgon carriebowensis" primer_bind 1..20 rRNA 21..1813 /product="small-subunit ribosomal RNA" primer_bind complement(1814..1841) BASE COUNT 439 a 391 c 547 g 464 t BASE COUNT 439 a 391 c 547 g 464 t 1432 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ auaaguga-u uc-------- 121 ---ug-a-ug acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aauuucu ucgaugg<-- -uaacu-ua- c-u>AUUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUC-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UGG-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAC U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- acu)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GG GG-ACCC(-- gau)GGGUGC -C-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGCACU| UGU-AUUCCG -GCG--CU-A GA-G(GU-GA AA---)UUCU -UAGA-U-UG 1741 C-CGG-AAG- A-CAA-A-CC GCUGC(-GAA A)GC|GUCUG CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GGGa- ucgggcgug- gaau--(--- 1921 -ugcgau--- -------)-- -gac-ccgcc cggcacccu- -ccGG(-GAA A)CCA--AAG 1981 UU-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGGg-gc --|uauua-c cg---(cuuu u-uu------ 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-ga-gcuuu uuu------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- --------g| ac-CC-CUUC 2581 UUAGACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-agcggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u ccuaauccc- -caaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUAGAGG GU(UGCAAUU C)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCGU-GGG( UCAUCAU)CC CGCGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gau-ugucg- ug-a-ggg-g 3061 a-gcg----- ---------- ---------- --(uuug--- -)-------- ---------- 3121 ---------- -----cg-cu -cgu----uu cg-ug----- aag-aaaa|c uuggucgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS (5)-Rhodym 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodymeniales. ACCESSION No information KEYWORDS No information. SOURCE Rhodymeniales. ORGANISM Rhodymeniales. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (6)-Champi 3273 bp RNA RNA 24-JAN-191 DEFINITION Champiaceae. ACCESSION No information KEYWORDS No information. SOURCE Champiaceae. ORGANISM Champiaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Cha.affini 3273 bp RNA RNA 24-JAN-191 DEFINITION Champia affinis. ACCESSION No information KEYWORDS No information. SOURCE Champia affinis. ORGANISM Champia affinis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23951 LOCUS CAU23951 1773 bp rRNA PLN 24-DEC-1995 DEFINITION Champia affinis small subunit ribosomal RNA gene. ACCESSION U23951 NID g1134900 KEYWORDS . SOURCE Champia affinis. ORGANISM Champia affinis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Champiaceae; Champia. REFERENCE 1 (bases 1 to 1773) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134900 FEATURES Location/Qualifiers source 1..1773 /organism="Champia affinis" /isolate="Voucher G0106" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1773 /product="small subunit ribosomal RNA" primer_bind complement(1746..1773) /note="3' PCR primer" BASE COUNT 457 a 359 c 491 g 466 t ORIGIN BASE COUNT 457 a 359 c 491 g 466 t 1500 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGAGGAC |UG|-gaga- ucgggug-g- gaau--(--a 1921 ccuauau--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|uagua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-c-ua| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| uu-gC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-AC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 guac(--gaa a-)guauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-gacua- gg-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ug cc-ca----- guc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Chy.vertic 3273 bp RNA RNA 01-SEP-1999 DEFINITION Chylocladia verticillata.. ACCESSION No information KEYWORDS No information. SOURCE Chylocladia verticillata. ORGANISM Chylocladia verticillata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085263 LOCUS AF085263 1770 bp DNA PLN 01-SEP-1999 DEFINITION Chylocladia verticillata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085263 NID g5813886 VERSION AF085263.1 GI:5813886 KEYWORDS . SOURCE Chylocladia verticillata. ORGANISM Chylocladia verticillata Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Champiaceae; Chylocladia. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Chylocladia verticillata" /db_xref="taxon:81594" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 463 a 357 c 485 g 465 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augagugauc cu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UAUAUG---- ----(----) ---------- -------(-- --)--|---- 301 --CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UAU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-UAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGAGGAC |UG|-gaga- ucgggcg-g- aacu--(--- 1921 auuauau--- -------)-- -ggu-cugcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [agg-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|uacua-c cc---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ug-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-AC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-g 2821 gugc(--gaa a-)gcauu-g ccuaaucuc- -uaaa]---- ---------- ------uucg 2881 cuc-guGAUU GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ag-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gau----cg cc-ga----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Dic.saltat 3273 bp RNA RNA 01-SEP-1999 DEFINITION Dictyothamnion saltatum.. ACCESSION No information KEYWORDS No information. SOURCE Dictyothamnion saltatum. ORGANISM Dictyothamnion saltatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085264 LOCUS AF085264 1770 bp DNA PLN 01-SEP-1999 DEFINITION Dictyothamnion saltatum small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085264 NID g5813887 VERSION AF085264.1 GI:5813887 KEYWORDS . SOURCE Dictyothamnion saltatum. ORGANISM Dictyothamnion saltatum Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Champiaceae; Dictyothamnion. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Dictyothamnion saltatum" /db_xref="taxon:81598" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 447 a 368 c 496 g 459 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguguuu cu-------- 121 --uau-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gcu)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 C-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- gacc--(--- 1921 gu-auuu--- -------)-- -ggc-ucgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [agg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c ac---(cuuu ---------- 2401 ---------- ---------- -----)--uc g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ug-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-AC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gaa a-)guacu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-gga-u 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cu ac-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Gas.ovatum 3273 bp RNA RNA 01-SEP-1999 DEFINITION Gastroclonium ovatum.. ACCESSION No information KEYWORDS No information. SOURCE Gastroclonium ovatum. ORGANISM Gastroclonium ovatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085265 LOCUS AF085265 1769 bp DNA PLN 01-SEP-1999 DEFINITION Gastroclonium ovatum small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085265 NID g5813888 VERSION AF085265.1 GI:5813888 KEYWORDS . SOURCE Gastroclonium ovatum. ORGANISM Gastroclonium ovatum Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Champiaceae; Gastroclonium. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Gastroclonium ovatum" /db_xref="taxon:81587" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1769 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 464 a 359 c 483 g 463 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU CU-AAGU|-- -----|---- ---(----)[ augagugauc cu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UAUAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucga uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(C-UA 961 AACA)GCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UAU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-UAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CUAUGAGGAC |UG|-gaga- ucgggug-g- aacu--(--- 1921 auuauau--- -------)-- -ggu-ccgcc cggcacccu- -ucGG(-GAA A)CCA--AAG 1981 UA-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [agg-acau- aauaaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|uacua-c cc---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ug-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-AC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----ggu-u 2821 gugc(--gaa a-)gcauu-g ccuaaucuc- -uaaa]---- ---------- ------uucg 2881 cuc-guGAUU GGGAUAGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ag-u-gga-c 3061 u-gug----- ---------- ---------- --(uuu---- -)-------- ---------- 3121 ---------- -----ca-ca -gau----cg cc-ga----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS Cep.leucob 3273 bp RNA RNA 24-JAN-191 DEFINITION Cephalocystis leucobotrys. ACCESSION No information KEYWORDS No information. SOURCE Cephalocystis leucobotrys. ORGANISM Cephalocystis leucobotrys. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23950 LOCUS CSU23950 1770 bp rRNA PLN 24-DEC-1995 DEFINITION Cephalocystis luecobotrys small subunit ribosomal RNA gene. ACCESSION U23950 NID g1134903 KEYWORDS . SOURCE Cephalocystis leucobotrys. ORGANISM Cephalocystis leucobotrys Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Cephalocystis. REFERENCE 1 (bases 1 to 1770) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134903 FEATURES Location/Qualifiers source 1..1770 /organism="Cephalocystis leucobotrys" /isolate="Voucher G0195" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 439 a 370 c 509 g 452 t ORIGIN BASE COUNT 439 a 370 c 509 g 452 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUUUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- acg)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gaa)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|gauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-gC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-c-gua-g 3061 u-gug----- ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- -----ca-ca -ugu----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCU~~~ ~~~~~~~~|| ||| // LOCUS (6)-Erythr 3273 bp RNA RNA 24-JAN-191 DEFINITION Erythrymenia. ACCESSION No information KEYWORDS No information. SOURCE Erythrymenia. ORGANISM Erythrymenia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Ery.minuta 3273 bp RNA RNA 01-SEP-1999 DEFINITION Erythrymenia minuta.. ACCESSION No information KEYWORDS No information. SOURCE Erythrymenia minuta. ORGANISM Erythrymenia minuta. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085272 LOCUS AF085272 1766 bp DNA PLN 01-SEP-1999 DEFINITION Erythrymenia minuta small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085272 NID g5813895 VERSION AF085272.1 GI:5813895 KEYWORDS . SOURCE Erythrymenia minuta. ORGANISM Erythrymenia minuta Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Erythrymenia. REFERENCE 1 (bases 1 to 1766) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1766) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Erythrymenia minuta" /db_xref="taxon:81600" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1766 /product="small subunit ribosomal RNA" primer_bind complement(1739..1766) /note="3' PCR primer" BASE COUNT 440 a 366 c 502 g 458 t 1507 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagu-a-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----uu-uu- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGCCAUU| UGU-AUUCUA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG GCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- gacu--(--- 1921 gauauuucu- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGAu-gc --|uugua-u cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug a-ua-c-uc| ---g-u---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -a-au-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----AUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcguu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-gga-c 3061 c-gug----- ---------- ---------- --(uca---- -)-------- ---------- 3121 ---------- -----ua-cg -gac----ug uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (6)-Fauche 3273 bp RNA RNA 24-JAN-191 DEFINITION Faucheaceae. ACCESSION No information KEYWORDS No information. SOURCE Faucheaceae. ORGANISM Faucheaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... ....-..... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Fau.lacini 3273 bp RNA RNA 01-SEP-1999 DEFINITION Fauchea laciniata.. ACCESSION No information KEYWORDS No information. SOURCE Fauchea laciniata. ORGANISM Fauchea laciniata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085266 LOCUS AF085266 1765 bp DNA PLN 01-SEP-1999 DEFINITION Fauchea laciniata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085266 NID g5813889 VERSION AF085266.1 GI:5813889 KEYWORDS . SOURCE Fauchea laciniata. ORGANISM Fauchea laciniata Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Faucheaceae; Fauchea. REFERENCE 1 (bases 1 to 1765) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1765) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Fauchea laciniata" /db_xref="taxon:42799" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1765 /product="small subunit ribosomal RNA" primer_bind complement(1738..1765) /note="3' PCR primer" BASE COUNT 442 a 369 c 494 g 460 t 1508 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagugu-g uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugu<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggacg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccguu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGu-uc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| --ua-g---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| au-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CU(--- ---------- ----guCUA- 2641 )AGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ag-c-gga-c 3061 u-gu------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gac----cg uu-ua----- guc-ugaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Fau.repens 3273 bp RNA RNA 01-SEP-1999 DEFINITION Fauchea repens.. ACCESSION No information KEYWORDS No information. SOURCE Fauchea repens. ORGANISM Fauchea repens. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085267 LOCUS AF085267 1767 bp DNA PLN 01-SEP-1999 DEFINITION Fauchea repens small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085267 NID g5813890 VERSION AF085267.1 GI:5813890 KEYWORDS . SOURCE Fauchea repens. ORGANISM Fauchea repens Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Faucheaceae; Fauchea. REFERENCE 1 (bases 1 to 1767) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1767) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1767 /organism="Fauchea repens" /db_xref="taxon:81586" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1767 /product="small subunit ribosomal RNA" primer_bind complement(1740..1767) /note="3' PCR primer" BASE COUNT 445 a 365 c 494 g 463 t 1506 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagugu-g uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugu<-- ---uca-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggacg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccguu cggcauccc- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGu-uc --|cauua-c cg---(auuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| --ua-g---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| au-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CU(--- ---------- ----guCUA- 2641 )AGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ag-c-gga-c 3061 u-gu------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gac----cg uu-ua----- guc-uaaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Fau.corona 3273 bp RNA RNA 01-SEP-1999 DEFINITION Faucheopsis coronata.. ACCESSION No information KEYWORDS No information. SOURCE Faucheopsis coronata. ORGANISM Faucheopsis coronata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085268 LOCUS AF085268 1766 bp DNA PLN 01-SEP-1999 DEFINITION Faucheopsis coronata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085268 NID g5813891 VERSION AF085268.1 GI:5813891 KEYWORDS . SOURCE Faucheopsis coronata. ORGANISM Faucheopsis coronata Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Faucheaceae; Faucheopsis. REFERENCE 1 (bases 1 to 1766) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1766) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Faucheopsis coronata" /db_xref="taxon:81603" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1766 /product="small subunit ribosomal RNA" primer_bind complement(1739..1766) /note="3' PCR primer" BASE COUNT 443 a 372 c 489 g 462 t 1507 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagugu-c uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugu<-- ---uuc-ua- c-u>agUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAUCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCCG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggacg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccguu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGu-uc --|cauua-c cg---(ucuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| --ua-g---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| au-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CC(--- ---------- ----GUCUA- 2641 )GGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gaa a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUCGAA UGCUAAggug agg-ccguag gag-gguua- ag-c-gga-c 3061 u-gu------ ---------- ---------- --(auuc--- -)-------- ---------- 3121 ---------- ------a-ca -gac----cg uu-ua----- guc-uaaa|u uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Web.splach 3273 bp RNA RNA 01-SEP-1999 DEFINITION Webervanbossea splachnoides.. ACCESSION No information KEYWORDS No information. SOURCE Webervanbossea splachnoides. ORGANISM Webervanbossea splachnoides. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Faucheaceae fam. nov JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085269 LOCUS AF085269 1768 bp DNA PLN 01-SEP-1999 DEFINITION Webervanbossea splachnoides small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085269 NID g5813892 VERSION AF085269.1 GI:5813892 KEYWORDS . SOURCE Webervanbossea splachnoides. ORGANISM Webervanbossea splachnoides Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Faucheaceae; Webervanbossea. REFERENCE 1 (bases 1 to 1768) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1768) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Webervanbossea splachnoides" /db_xref="taxon:81619" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1768 /product="small subunit ribosomal RNA" primer_bind complement(1741..1768) /note="3' PCR primer" BASE COUNT 446 a 372 c 496 g 454 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagugu-c uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugu<-- ---uaa-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggacg-g- ggcu--(--- 1921 -guacuu--- -------)-- -ggc-ccguu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG AU-AGGc-uc --|cauua-c c----(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| c-ua-g---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| au-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CU(--- ---------- ----GUCUA- 2641 )AGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-gacua- ga-u-gga-c 3061 u-gug----- ---------- ---------- --(guua--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ug cc-ug----- guc-uaaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (6)-Fryeel 3273 bp RNA RNA 24-JAN-191 DEFINITION Fryeella. ACCESSION No information KEYWORDS No information. SOURCE Fryeella. ORGANISM Fryeella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... ....-..... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Fry.gardne 3273 bp RNA RNA 01-SEP-1999 DEFINITION Fryeella gardneri.. ACCESSION No information KEYWORDS No information. SOURCE Fryeella gardneri. ORGANISM Fryeella gardneri. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085273 LOCUS AF085273 1769 bp DNA PLN 01-SEP-1999 DEFINITION Fryeella gardneri small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085273 NID g5813896 VERSION AF085273.1 GI:5813896 KEYWORDS . SOURCE Fryeella gardneri. ORGANISM Fryeella gardneri Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Fryeella. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Fryeella gardneri" /db_xref="taxon:81605" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1769 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 443 a 362 c 499 g 465 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AAUA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCUA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)guauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggcg agg-ccuugg gag-ggcua- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(ucuu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cu uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (6)-Loment 3273 bp RNA RNA 24-JAN-191 DEFINITION Lomentariaceae. ACCESSION No information KEYWORDS No information. SOURCE Lomentariaceae. ORGANISM Lomentariaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Gel.variab 3273 bp RNA RNA 01-SEP-1999 DEFINITION Gelidiopsis variabilis.. ACCESSION No information KEYWORDS No information. SOURCE Gelidiopsis variabilis. ORGANISM Gelidiopsis variabilis. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085270 LOCUS AF085270 1771 bp DNA PLN 01-SEP-1999 DEFINITION Gelidiopsis variabilis small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085270 NID g5813893 VERSION AF085270.1 GI:5813893 KEYWORDS . SOURCE Gelidiopsis variabilis. ORGANISM Gelidiopsis variabilis Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Lomentariaceae; Gelidiopsis. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Gelidiopsis variabilis" /db_xref="taxon:81607" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1771 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 442 a 359 c 496 g 474 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaggaaga uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugc<-- --uauu-ua- c-u>uuACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUa---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-A(- aau)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggacg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccguu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGAa-au --|gacua-c -a---(cuuu g--------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -c-uu-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CC(--- ---------- ----GUCUA- 2641 )GGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- ga-u-ggu-c 3061 u-gu------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gac----ug uc-ug----- guc-uaaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Lom.bailey 3273 bp RNA RNA 24-JAN-191 DEFINITION Lomentaria baileyana. ACCESSION No information KEYWORDS No information. SOURCE Lomentaria baileyana. ORGANISM Lomentaria baileyana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L26194 LOCUS LMTFRA 1761 bp ds-DNA PLN 30-JUN-1994 DEFINITION Lomentaria baileyanam DNA fragment. ACCESSION L26194 KEYWORDS PCR amplified. SOURCE Lomentaria baileyana DNA. ORGANISM Lomentaria baileyana Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Rhodymeniales; Lomentariaceae. REFERENCE 1 (bases 1 to 1761) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507276 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1735..1761 /standard_name="PCR primer" /note="putative" source 1..1761 /organism="Lomentaria baileyana" /sequenced_mol="DNA" BASE COUNT 448 a 361 c 484 g 468 t BASE COUNT 448 a 361 c 484 g 468 t 1512 others ORIGIN 1 |~~~~~CAAC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaggaaua uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugc<-- ---uau-ua- c-u>UUACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUA---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-A(- aau)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucggacg-g- ggcu--(--- 1921 -uuauuu--- -------)-- -ggc-ccgcu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCU-GG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGAa-au --|cauua-c -----(acuu u--------- 2401 ---------- ---------- -----)-gug g-ua-g-ug| a-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -c-uu-cuUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CC(--- ---------- ----GUCUA- 2641 )GGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-u-ggc-c 3061 u-gu------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gac----ua uc-ug----- guc-uaaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCAUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Lom.austra 3273 bp RNA RNA 26-JUL-1996 DEFINITION Lomentaria australis.. ACCESSION No information KEYWORDS No information. SOURCE Lomentaria australis. ORGANISM Lomentaria australis. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U33134 LOCUS LAU33134 1762 bp DNA PLN 26-JUL-1996 DEFINITION Lomentaria australis 18S ribosomal RNA gene, complete sequence. ACCESSION U33134 NID g1463114 KEYWORDS . SOURCE Lomentaria australis. ORGANISM Lomentaria australis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Lomentariaceae; Lomentaria. REFERENCE 1 (bases 1 to 1762) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1762) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1762 /organism="Lomentaria australis" /note="isolate G0090" rRNA 1..1762 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1735..1762) /note="3' PCR primer" BASE COUNT 444 a 363 c 486 g 469 t BASE COUNT 444 a 363 c 486 g 469 t 1511 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaggaaua uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugc<-- ---uau-ua- c-u>UCACGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUA---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCG-A(- aau)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-C- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAC-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-GAga- ucggacg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccguu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGAa-au --|cauua-c -a---(cuu- ---------- 2401 ---------- ---------- -----)ugug g-ua-g-ug| a-u------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- )--------- 2521 ---------- ---------- ---------- ---------- ---------| -c-uu-cuUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CC(--- ---------- ----GUCUA- 2641 )GGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-gUGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-u-ggc-c 3061 u-gu------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gac----ug uc-ug----- guc-uaaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Sem.minuta 3273 bp RNA RNA 01-SEP-1999 DEFINITION Semnocarpa minuta.. ACCESSION No information KEYWORDS No information. SOURCE Semnocarpa minuta. ORGANISM Semnocarpa minuta. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085271 LOCUS AF085271 1768 bp DNA PLN 01-SEP-1999 DEFINITION Semnocarpa minuta small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085271 NID g5813894 VERSION AF085271.1 GI:5813894 KEYWORDS . SOURCE Semnocarpa minuta. ORGANISM Semnocarpa minuta Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Lomentariaceae; Semnocarpa. REFERENCE 1 (bases 1 to 1768) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1768) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Semnocarpa minuta" /db_xref="taxon:81615" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1768 /product="small subunit ribosomal RNA" primer_bind complement(1741..1768) /note="3' PCR primer" BASE COUNT 441 a 358 c 493 g 476 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaggaaua uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagca 181 au-aauuucu ucgaugc<-- ---uau-uu- a-u>uuaCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUa---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-U AUGGUAAG-( GUAGUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGGU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AACUUACCC- AAUCCU-A(- aag)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-ACCC(-- aau)GGGUCU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)UCU|U -AUCGA-GG- AUC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CU GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucggacg-g- ggcu--(--- 1921 -guuuuu--- -------)-- -ggc-ccguu cggcauccc- -ccGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGG)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGAa-au --|uguua-c ua---(cuuu u--------- 2401 ---------- ---------- -----)--ug g-ua-g-cg| a-u------- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| -c-uu-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-CC(--- ---------- ----GUCUA- 2641 )GGCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gcgc(--gag a-)gcguu-u ccuaaccuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGAUG GGGAUUGAGG CU(UGCAAUU U)UCCC-UCA UGAACGAGGA AUACCUUGUA 2941 GGCAC-GGG( UCAUCAU)CC CGUGC-CGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-gauugg gag-gacug- ga-u-ggu-c 3061 u-ga------ ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- ------a-ca -gac----ug uc-ug----- guc-ugaa|c uuucucgaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (6)-Rhodym 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodymeniaceae. ACCESSION No information KEYWORDS No information. SOURCE Rhodymeniaceae. ORGANISM Rhodymeniaceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Ast.peltat 3273 bp RNA RNA 01-SEP-1999 DEFINITION Asteromenia peltata.. ACCESSION No information KEYWORDS No information. SOURCE Asteromenia peltata. ORGANISM Asteromenia peltata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Faucheaceae fam. nov The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085253 LOCUS AF085253 1769 bp DNA PLN 01-SEP-1999 DEFINITION Asteromenia peltata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085253 NID g5813876 VERSION AF085253.1 GI:5813876 KEYWORDS . SOURCE Asteromenia peltata. ORGANISM Asteromenia peltata Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Asteromenia. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Asteromenia peltata" /db_xref="taxon:81590" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1769 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 436 a 374 c 506 g 453 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-a aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggcg agg-ccuugg gag-ggcug- aa-c-gaa-c 3061 u-gug----- ---------- ---------- --(uuac--- -)-------- ---------- 3121 ---------- -----ca-ca -gau----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bot.ebrios 3273 bp RNA RNA 01-SEP-1999 DEFINITION Botryocladia ebriosa.. ACCESSION No information KEYWORDS No information. SOURCE Botryocladia ebriosa. ORGANISM Botryocladia ebriosa. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085255 LOCUS AF085255 1770 bp DNA PLN 01-SEP-1999 DEFINITION Botryocladia ebriosa small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085255 NID g5813878 VERSION AF085255.1 GI:5813878 KEYWORDS . SOURCE Botryocladia ebriosa. ORGANISM Botryocladia ebriosa Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Botryocladia. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Botryocladia ebriosa" /db_xref="taxon:81584" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 439 a 369 c 506 g 456 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cc---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uua------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u cccaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ug uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Bot.sonder 3273 bp RNA RNA 01-SEP-1999 DEFINITION Botryocladia sonderi.. ACCESSION No information KEYWORDS No information. SOURCE Botryocladia sonderi. ORGANISM Botryocladia sonderi. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Faucheaceae fam. nov JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085256 LOCUS AF085256 1769 bp DNA PLN 01-SEP-1999 DEFINITION Botryocladia sonderi small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085256 NID g5813879 VERSION AF085256.1 GI:5813879 KEYWORDS . SOURCE Botryocladia sonderi. ORGANISM Botryocladia sonderi Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Botryocladia. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Botryocladia sonderi" /db_xref="taxon:81585" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1769 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 440 a 370 c 504 g 455 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cc---(uuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| u--GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uaa------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----ua uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cep.furcel 3273 bp RNA RNA 24-JAN-191 DEFINITION Cephalocystis furcellata. ACCESSION No information KEYWORDS No information. SOURCE Cephalocystis furcellata. ORGANISM Cephalocystis furcellata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23949 LOCUS CFU23949 1770 bp rRNA PLN 24-DEC-1995 DEFINITION Cephalocystis furcellata small subunit ribosomal RNA gene. ACCESSION U23949 NID g1134902 KEYWORDS . SOURCE Cephalocystis furcellata. ORGANISM Cephalocystis furcellata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Cephalocystis. REFERENCE 1 (bases 1 to 1770) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134902 FEATURES Location/Qualifiers source 1..1770 /organism="Cephalocystis furcellata" /isolate="Voucher G0133" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 438 a 369 c 510 g 453 t ORIGIN BASE COUNT 438 a 369 c 510 g 453 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUUUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- acg)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|gauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-gC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-c-gua-g 3061 u-gug----- ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- -----ca-ca -ugu----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Chr.ornata 3273 bp RNA RNA 01-SEP-1999 DEFINITION Chrysymenia ornata.. ACCESSION No information KEYWORDS No information. SOURCE Chrysymenia ornata. ORGANISM Chrysymenia ornata. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Faucheaceae fam. nov JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085257 LOCUS AF085257 1771 bp DNA PLN 01-SEP-1999 DEFINITION Chrysymenia ornata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085257 NID g5813880 VERSION AF085257.1 GI:5813880 KEYWORDS . SOURCE Chrysymenia ornata. ORGANISM Chrysymenia ornata Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Chrysymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Chrysymenia ornata" /db_xref="taxon:81592" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1771 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 444 a 367 c 506 g 454 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ug- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(auuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ag-a-gaa-c 3061 u-gug----- ---------- ---------- --(ucuc--- -)-------- ---------- 3121 ---------- -----ca-cg -gau----cu uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Coe.opunti 3273 bp RNA RNA 01-SEP-1999 DEFINITION Coelarthrum opuntia.. ACCESSION No information KEYWORDS No information. SOURCE Coelarthrum opuntia. ORGANISM Coelarthrum opuntia. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085258 LOCUS AF085258 1770 bp DNA PLN 01-SEP-1999 DEFINITION Coelarthrum opuntia small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085258 NID g5813881 VERSION AF085258.1 GI:5813881 KEYWORDS . SOURCE Coelarthrum opuntia. ORGANISM Coelarthrum opuntia Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Coelarthrum. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Coelarthrum opuntia" /db_xref="taxon:81596" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 439 a 373 c 509 g 449 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagaga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- aa-c-gaa-c 3061 u-gug----- ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- -----ca-ca -gau----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Cor.erecta 3273 bp RNA RNA 24-JAN-191 DEFINITION Cordylecladia erecta. ACCESSION No information KEYWORDS No information. SOURCE Cordylecladia erecta. ORGANISM Cordylecladia erecta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23952 LOCUS CEU23952 1771 bp rRNA PLN 24-DEC-1995 DEFINITION Cordylecladia erecta small subunit ribosomal RNA gene. ACCESSION U23952 NID g1134901 KEYWORDS . SOURCE Cordylecladia erecta. ORGANISM Cordylecladia erecta Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Cordylecladia. REFERENCE 1 (bases 1 to 1771) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134901 FEATURES Location/Qualifiers source 1..1771 /organism="Cordylecladia erecta" /isolate="Voucher G0206" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1771 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 436 a 372 c 510 g 453 t ORIGIN BASE COUNT 436 a 372 c 510 g 453 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(uuua--- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Ery.podagr 3273 bp RNA RNA 24-JAN-191 DEFINITION Erythrocolon podagricum. ACCESSION No information KEYWORDS No information. SOURCE Erythrocolon podagricum. ORGANISM Erythrocolon podagricum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U23953 LOCUS EPU23953 1772 bp rRNA PLN 24-DEC-1995 DEFINITION Erythrocolon podagricum small subunit ribosomal RNA gene. ACCESSION U23953 NID g1134904 KEYWORDS . SOURCE Erythrocolon podagricum. ORGANISM Erythrocolon podagricum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Erythrocolon. REFERENCE 1 (bases 1 to 1772) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134904 FEATURES Location/Qualifiers source 1..1772 /organism="Erythrocolon podagricum" /isolate="Voucher G0202" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1772 /product="small subunit ribosomal RNA" primer_bind complement(1745..1772) /note="3' PCR primer" BASE COUNT 440 a 373 c 510 g 449 t ORIGIN BASE COUNT 440 a 373 c 510 g 449 t 1501 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 -auac-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAGC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- aau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- gacu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-cacugg gag-ggcug- aa-c-gaa-c 3061 u-gug----- ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- -----ca-cg -gau----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Glo.browni 3273 bp RNA RNA 01-SEP-1999 DEFINITION Gloiosaccion brownii.. ACCESSION No information KEYWORDS No information. SOURCE Gloiosaccion brownii. ORGANISM Gloiosaccion brownii. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Faucheaceae fam. nov JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085259 LOCUS AF085259 1770 bp DNA PLN 01-SEP-1999 DEFINITION Gloiosaccion brownii small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085259 NID g5813882 VERSION AF085259.1 GI:5813882 KEYWORDS . SOURCE Gloiosaccion brownii. ORGANISM Gloiosaccion brownii Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Gloiosaccion. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Gloiosaccion brownii" /db_xref="taxon:81609" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 445 a 368 c 504 g 453 t 1503 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ug- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGA---- ---------- ----(----) [uc-aacggg 2761 -uca------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ag-a-gaa-c 3061 u-gug----- ---------- ---------- --(uuuc--- -)-------- ---------- 3121 ---------- -----ca-cg -gau----cu uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Hym.crusti 3273 bp RNA RNA 01-SEP-1999 DEFINITION Hymenocladiopsis crustigena.. ACCESSION No information KEYWORDS No information. SOURCE Hymenocladiopsis crustigena. ORGANISM Hymenocladiopsis crustigena. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085274 LOCUS AF085274 1768 bp DNA PLN 01-SEP-1999 DEFINITION Hymenocladiopsis crustigena small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085274 NID g5813897 VERSION AF085274.1 GI:5813897 KEYWORDS . SOURCE Hymenocladiopsis crustigena. ORGANISM Hymenocladiopsis crustigena Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Hymenocladiopsis. REFERENCE 1 (bases 1 to 1768) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1768) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Hymenocladiopsis crustigena" /db_xref="taxon:38333" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1768 /product="small subunit ribosomal RNA" primer_bind complement(1741..1768) /note="3' PCR primer" BASE COUNT 440 a 364 c 503 g 461 t 1505 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCUA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gu-uuuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg------ ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GUCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gaa a-)gcguu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(uuuu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cu uc-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Irv.ardrea 3273 bp RNA RNA 01-SEP-1999 DEFINITION Irvinea ardreana.. ACCESSION No information KEYWORDS No information. SOURCE Irvinea ardreana. ORGANISM Irvinea ardreana. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085254 LOCUS AF085254 1769 bp DNA PLN 01-SEP-1999 DEFINITION Irvinea ardreana small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085254 NID g5813877 VERSION AF085254.1 GI:5813877 KEYWORDS . SOURCE Irvinea ardreana. ORGANISM Irvinea ardreana Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Irvinea. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Irvinea ardreana" /db_xref="taxon:81611" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1769 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 433 a 371 c 513 g 452 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ug- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcguu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ag-u-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-ca -gac----cg uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Lept.rosea 3273 bp RNA RNA 01-SEP-1999 DEFINITION Leptosomia rosea.. ACCESSION No information KEYWORDS No information. SOURCE Leptosomia rosea. ORGANISM Leptosomia rosea. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085260 LOCUS AF085260 1777 bp DNA PLN 01-SEP-1999 DEFINITION Leptosomia rosea small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085260 NID g5813883 VERSION AF085260.1 GI:5813883 KEYWORDS . SOURCE Leptosomia rosea. ORGANISM Leptosomia rosea Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Leptosomia. REFERENCE 1 (bases 1 to 1777) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1777) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1777 /organism="Leptosomia rosea" /db_xref="taxon:81613" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1777 /product="small subunit ribosomal RNA" primer_bind complement(1750..1777) /note="3' PCR primer" BASE COUNT 443 a 379 c 506 g 449 t 1496 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augagucu-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ug- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 --CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-gucca- aa-cggaa-c 3061 u-gug----- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- -----ca-ca -gaa----cg uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Rho.leptop 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhodymenia leptophylla. ACCESSION No information KEYWORDS No information. SOURCE Rhodymenia leptophylla. ORGANISM Rhodymenia leptophylla. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U09621 LOCUS RLU09621 1771 bp DNA PLN 08-OCT-1999 DEFINITION Rhodymenia leptophylla small-subunit ribosomal RNA gene, complete sequence. ACCESSION U09621 NID g595313 VERSION U09621.1 GI:595313 KEYWORDS ribosomal RNA small subunit. SOURCE Rhodymenia leptophylla. ORGANISM Rhodymenia leptophylla Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Rhodymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia FEATURES Location/Qualifiers source 1..1771 /organism="Rhodymenia leptophylla" /isolate="VOUCHER GWS-G0001" /db_xref="taxon:105598" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1771 /product="small-subunit ribosomal RNA" primer_bind complement(1744..1771) /note="PCR 3' end primer" BASE COUNT 435 a 375 c 510 g 451 t BASE COUNT 435 a 375 c 510 g 451 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccaaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uu-ug----- gcc-caaa|c uuggccaagc 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Rho.stenog 3273 bp RNA RNA 01-SEP-1999 DEFINITION Rhodymenia stenoglossa.. ACCESSION No information KEYWORDS No information. SOURCE Rhodymenia stenoglossa. ORGANISM Rhodymenia stenoglossa. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Faucheaceae fam. nov JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085262 LOCUS AF085262 1771 bp DNA PLN 01-SEP-1999 DEFINITION Rhodymenia stenoglossa small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085262 NID g5813885 VERSION AF085262.1 GI:5813885 KEYWORDS . SOURCE Rhodymenia stenoglossa. ORGANISM Rhodymenia stenoglossa Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Rhodymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Rhodymenia stenoglossa" /db_xref="taxon:81588" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1771 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 434 a 374 c 512 g 451 t 1502 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---gu-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -cga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 gugc(--gag a-)gcauu-u ccaaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAC-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcua- aa-u-gga-c 3061 u-gug----- ---------- ---------- --(uucu--- -)-------- ---------- 3121 ---------- -----ca-cg -gac----cg uu-ug----- gcc-caaa|c uuggccaagc 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS Spa.pertus 3273 bp RNA RNA 01-SEP-1999 DEFINITION Sparlingia pertusa.. ACCESSION No information KEYWORDS No information. SOURCE Sparlingia pertusa. ORGANISM Sparlingia pertusa. REFERENCE 1 (bases 1 to 1694) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE molecular-systematic investigation with a description of JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF085261 LOCUS AF085261 1769 bp DNA PLN 01-SEP-1999 DEFINITION Sparlingia pertusa small subunit ribosomal RNA gene, complete sequence. ACCESSION AF085261 NID g5813884 VERSION AF085261.1 GI:5813884 KEYWORDS . SOURCE Sparlingia pertusa. ORGANISM Sparlingia pertusa Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Sparlingia. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov JOURNAL Unpublished REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (19-AUG-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Sparlingia pertusa" /db_xref="taxon:81617" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1769 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 441 a 369 c 507 g 452 t 1504 others ORIGIN 1 |~~~~~C-AC CUGGU(UGA) UCCU|GCCAG UGGU-A-UAU GCUUGUCUCA AG|GACUAAG 61 CCAUGCAAGU GU-AAGU|-- -----|---- ---(----)[ augaguga-a uu-------- 121 ---au-a-ca acga-a]--- --------|- --ACU|-GCG AAUGGCUCGG UAAAAcagcu 181 au-aguuucu ucgauga<-- ----ua-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucgu uc-aa|auuu cuga|CCUAU 601 CAACUUUG-G AUGGUAAG-( GUAUUGU)-C UU-ACCAU|G G-UUU-UGAC |GGGUAACGG 661 A|CCG-U(GG GU)GCGGGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCG-G(- aca)CCGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCAAUA-GA GG-GCCC(-- gau)GGGUUU -U-CU-AAUU GGAAUGAGA| ACAAG(G-UA 961 AACA)GCU|U -AUCGA-GG- AGC>CAGCAG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CUGUAAGCGU A|UACCAA-A GUUG--UUGC AG|UUAAAAC 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UGGU-U- 1681 GGGGGCAUU| UGU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UG 1741 U-UGG-AAG- A-CAA-A-CA GCUGC(-GAA A)GC|GUCUG CCAA|G-GAC AUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAAGGGGAU CGAA--GAC- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUUU -ACU-AUAAA CGAUGAGGAC |UG|-gaga- ucgggcg-g- ggcu--(--- 1921 gucauuu--- -------)-- -ggc-ccgcc cggcauccu- -ucGG(-GAA A)CCA--AAG 1981 UG-uuugCUU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGG AGGGCAUCAC -CGGGUGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [cgg-acau- agugaggauu gac-aga(uu -gagag-c)u 2161 cuuucuugau ucuauggu]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UCU GUCUGG(UUA AUU)CCGUUA ACGAGCGAGA CCUGGG|--- ---------- 2341 ----(----- )[CGUGUUAG CU-AGGc-gc --|cauua-c cg---(cuuu ---------- 2401 ---------- ---------- -----)--ug g-ua-g-ug| a-gg-c---- ---------- 2461 ---------- ---------- ---------- ---------- ------((-- -)-------- 2521 ---------- ---------- ---------- ---------- ---------| ua-GC-CUUC 2581 CUAAACG]-- -|-------- -----GACUG CGG-GC(--- ---------- ----GUCUA- 2641 )GCCCGCGGA AGCUCCAGGC AAUAACAGGU CUGAGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGUG -CUA-CACUG AGCGGG---- ---------- ----(----) [uc-aacggg 2761 -uga------ -|-------- ----(----- --)------- ---------- |----gga-u 2821 augc(--gag a-)gcauu-u ccuaaucuc- -uaaa]---- ---------- ------uccg 2881 cuc-guGCUG GGGAUCGAGG CU(UGCAAUU U)UCCC-UCU UGAACGAGGA AUACCUUGUA 2941 AGCAU-GGG( UCAUCAU)CC CGUGC-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCUCCU ACCGAUUGAG UGGUCCggug agg-ccuugg gag-ggcug- ga-u-gga-c 3061 u-guu----- ---------- ---------- --(uu-u--- -)-------- ---------- 3121 ---------- -----aa-ca -gac----ca uu-ug----- gcc-caaa|c uuggucaaac 3181 cuuaucacuu agAGGAAGGA GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGCu~~~ ~~~~~~~~|| ||| // LOCUS (3)-strame 3273 bp RNA RNA 13-JAN-1999 DEFINITION stramenopiles. ACCESSION No information KEYWORDS No information. SOURCE stramenopiles. ORGANISM stramenopiles. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS (4)-Bacill 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bacillariophyta. ACCESSION No information KEYWORDS No information. SOURCE Bacillariophyta. ORGANISM Bacillariophyta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Act.curvat 3273 bp RNA RNA 30-JUN-1996 DEFINITION Actinocyclus curvatulus.. ACCESSION No information KEYWORDS No information. SOURCE Actinocyclus curvatulus. ORGANISM Actinocyclus curvatulus. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE rRNAs Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85401 LOCUS ACRNAR18S 1800 bp DNA PLN 30-JUN-1996 DEFINITION A.curvatulus 18S rRNA gene. ACCESSION X85401 NID g1418297 VERSION X85401.1 GI:1418297 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Actinocyclus curvatulus. ORGANISM Actinocyclus curvatulus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Hemidiscaceae; Actinocyclus. REFERENCE 1 (bases 1 to 1800) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1800) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1800 /organism="Actinocyclus curvatulus" /strain="AWI 85" /db_xref="taxon:49231" rRNA 1..1800 /product="18S ribosomal RNA" BASE COUNT 517 a 322 c 432 g 529 t BASE COUNT 517 a 322 c 432 g 529 t 1473 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ ACAAGA-AUU UU-------- 121 -----AC-UC U-AA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCGGCU 181 UU-AACUUAU UUGAUAA<-- -UUACU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---AAAUCAU UC-AU|guUU ccgC|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UUAC |GGGUGACGG 661 A|GGG-U(UA GG)GCUUGAC C-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- AUA)CAGGG- 781 A-GGU|A|-G UGACGAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CU GG-GGCA(-U UUu)GC-UCU -G-GC-AAUU GGAAUGAGA| ACCAU(U-UA 961 AAUC)UCA|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)u UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCcCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCCA -AUG--UU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAAGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCAAC |UA|-GGGA- UGGGUGG-u- Ugu---(--g 1921 caaaca---- -------)-- --ac-accUu CCGCACCUU- -CCGA(-GAA A)UCA--AAG 1981 UU-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGAUGU|G GAGCAUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-U)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (UUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGCu--- --|aauau-a aug-U(uugu ---------- 2401 ---------- ---------- -----)ucau u-gu-u-uu| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----AACUU UUC-GU(--- ---------- ----gacua- 2641 )ACGAAaGGA AGUUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGAC 2701 GGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACAAG 2761 -UAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 AGCC(--GAG AC)GGUU--G GGUAAUCUUA UAAAU]---- ---------- ------GUGC 2881 GUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUAUCUAGUA 2941 AGUGC-GCU( UCAUCAA)AG CGUGC-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAA-ACCUGG GAu-auuag- au-a-ugu-g 3061 c-u------- ---------- ---------- --(guuuua- -)-------- ---------- 3121 ---------- --------gg -uau----gu gu-uu----- agu-agaa|C UCGUUUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Bac.paxill 3273 bp RNA RNA 24-JAN-191 DEFINITION Bacillaria paxillifer. ACCESSION No information KEYWORDS No information. SOURCE Bacillaria paxillifer. ORGANISM Bacillaria paxillifer. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87325 LOCUS BLLRRNAA 1790 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Bacillaria paxillifer 16S-like ribosomal RNA, complete. ACCESSION M87325 KEYWORDS 16S-like ribosomal RNA; Protist; small subunit ribosomal RNA. SOURCE Bacillaria paxillifer (sub_species Mull Hend.) rRNA. ORGANISM Bacillaria paxillifer Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1790) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1790 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 467 a 345 c 473 g 505 t ORIGIN BASE COUNT 467 a 345 c 473 g 505 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-CUU UU-------- 121 -----AC-UU U-GA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUU-GG AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u ugu)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGCGG-A- -gucu-(--- 1921 cguuuug--- -------)-- --uc-uccgu cagcaccuu- -AUGA(-GAA A)UCAC-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGcu--- --|uaccg-a gug-a(augu ---------- 2401 ---------- ---------- -----)ucac u-gg-g-ug| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-CUUC 2581 UUAGAGG]-- -|-------- -----GACGU gca-uu(--- ---------- ---cuauua- 2641 )GAUGCAGGA AGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [UC-AACGAG 2761 -UUU------ -|-------- ----(----- --)------- ---------- |--AACCU-U 2821 GGCU(--GAG A-)AGCCU-G GGCAAUCUUU UGAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-ugugg- cg-a-guu-c 3061 c-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gg -gag----uu ug-uc----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Cyl.closte 3273 bp RNA RNA 24-JAN-191 DEFINITION Cylindrotheca closterium subsp. misentered Cylindrotheca closteriva. ACCESSION No information KEYWORDS No information. SOURCE Cylindrotheca closterium subsp. misentered Cylindrotheca closteriva. ORGANISM Cylindrotheca closterium. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87326 LOCUS CYLRRNAA 1788 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Cylindrotheca closteriva 16S-like ribosomal RNA, complete. ACCESSION M87326 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Cylindrotheca closterium (sub_species Reim and Lewin) rRNA. ORGANISM Cylindrotheca closterium Eukaryota; Fungi; Chromophycota; Bacillariophyceae; Pennales; Araphidineae; Diatomaceae. REFERENCE 1 (bases 1 to 1788) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 28..1761 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 470 a 346 c 468 g 504 t ORIGIN BASE COUNT 470 a 346 c 468 g 504 t 1485 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-AUC UU-------- 121 -----AC-UU U-GA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u ugu)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGUGG-A- -guuu-(--- 1921 cguuaug--- -------)-- --uc-uccau cagcaccuu- -AUGA(-GAA A)UCAC-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-AGgu--- --|ugccu-a gug-a(auu- ---------- 2401 ---------- ---------- -----)ucac u-gg-g-ug| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---au-CUUC 2581 UUAGAGG]-- -|-------- -----GACGU GCA-UU(--- ---------- ---cuauua- 2641 )GAUGCAGGA AGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -UUC------ -|-------- ---------- ---------- ---------- |--UACCU-U 2821 GGCC(--GAG A-)GGCU--G GGCAAUCUUU UGAAC]---- ---------- ------CUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-ugugg- cg-a-guu-c 3061 c-c------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------gg -gag----uu ug-uc----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Cha.didymu 3273 bp RNA RNA 30-JUN-1996 DEFINITION Chaetoceros didymus.. ACCESSION No information KEYWORDS No information. SOURCE Chaetoceros didymus. ORGANISM Chaetoceros didymus. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85392 LOCUS CDRNAR18S 1790 bp DNA PLN 30-JUN-1996 DEFINITION C.didymus 18S rRNA gene. ACCESSION X85392 NID g1418414 VERSION X85392.1 GI:1418414 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Chaetoceros didymus. ORGANISM Chaetoceros didymus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 1 (bases 1 to 1790) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1790) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1790 /organism="Chaetoceros didymus" /db_xref="taxon:49238" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 494 a 340 c 444 g 511 t 1 others BASE COUNT 494 a 340 c 444 g 511 t 1484 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUGA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ ACAAAU-CUU UU-------- 121 -----ac-UU U-AA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 UU-AACCAAA CCGAGAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGCUCGG UC-GG|AAUU cugC|CCUAU 601 CAGCUUUG-G AAGGUAGU-( GUAUUGG)-A CU-ACCUU|G G-CUU-UAAC |GGGUAACGG 661 G|G-A-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCAU(-U UAU)UUGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-URGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAG -UAU--UC-A GU-G(GU-GA AA---)UACU -UAGA-U-CU 1741 A-CGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUAUGGGGAU CGAA--GAU- G(A-UCAG-A -UAC)C-AUC 1861 GUAGU|CUAU -ACC-AUAAA CUAUGCCGAC |UC|-AGGA- UGGGCAA-g- -au---(--G 1921 CUUUUG---- -------)-- --gu-cuugu CUGCACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G CUC(GCAA)G GGU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAAC-UGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUAUCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCAG|--- ---------- 2341 ---------- -[GCUgCAAA aU-AGGa--- --|acauc-u aua--(auuu ---------- 2401 ---------- ---------- -----)-uau a-gu-u-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---uc-uuUC 2581 UUUGAGC]-- -|-------- -----GACAU GUA-GU(--- ---------- ---Uucuaa- 2641 )GCUACaGGA AGAAUGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGAAC 2701 CGCACGCGUG -UUA-CACUG ACGUAU---- ---------- ---------- [UC-AACGAG 2761 -CUU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUG UUAAC]---- ---------- ------GUAC 2881 GUC-GUGAUA GGGAUCGAUU CU(UGCAAUU A)UUAA-UCG UGAAGCAGGA AUUCCUAGUA 2941 AACGC-AGU( UCAUCAA)AC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGUUCCGGUG AAA-UCUUGG GAg-ugugg- uu-u-guu-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -auc----uu -a-cc----- gua-uaaa|C AUGCUUAAAC 3181 CUUAACGUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Cha.rostra 3273 bp RNA RNA 30-JUN-1996 DEFINITION Chaetoceros rostratus.. ACCESSION No information KEYWORDS No information. SOURCE Chaetoceros rostratus. ORGANISM Chaetoceros rostratus. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85391 LOCUS CRRNAR18S 1799 bp DNA PLN 30-JUN-1996 DEFINITION C.rostratus 18S rRNA gene. ACCESSION X85391 NID g1418672 VERSION X85391.1 GI:1418672 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Chaetoceros rostratus. ORGANISM Chaetoceros rostratus Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 1 (bases 1 to 1799) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1799 /organism="Chaetoceros rostratus" /db_xref="taxon:49239" rRNA 1..1799 /product="18S ribosomal RNA" BASE COUNT 489 a 338 c 455 g 513 t 4 others BASE COUNT 489 a 338 c 455 g 513 t 1478 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUGA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-CUU UU-------- 121 -----ac-UU U-GA-A]--- --------|- --ACU|-GCA RAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACuGUA G(U-AAUU)C 241 UAGaGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U CUA)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCG-UAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| UGU-AUUCAG -UAU--UC-A GU-G(GU-GA AA---)UACU -UAGA-C-CU 1741 A-CGG-AAG- A-CAA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUAUGGGGAU CGAA--GAU- G(A-UCAG-A -UAC)C-GUC 1861 GUAGU|CUAU -ACC-AUAAA CUAUACCGAC |UC|-AGGA- UGGGAGG-g- gCGU--(--G 1921 UUUUU----- -------)-- -gcc-cucuu CUGCACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAAC-UGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUAUCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AAUg--- --|guguu-a aug-a(aucu ---------- 2401 ---------- ---------- -----)ucau u-gg-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ca-uuUC 2581 UUAGAGG]-- -|-------- -----GACAU GUA-GU(--- ---------- ----auaaa- 2641 )ACUACaGGA AGAUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGAAC 2701 CGCACGCGUG -UUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -CUU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUG UUAAC]---- ---------- ------GUGC 2881 GUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGA GAu-ugugg- uu-g-ggu-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -agc----cu ga-cu----- gug-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Chaeto.sp. 3273 bp RNA RNA 30-JUN-1996 DEFINITION Chaetoceros sp.. ACCESSION No information KEYWORDS No information. SOURCE Chaetoceros sp. ORGANISM Chaetoceros sp. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85390 LOCUS CRNAR18S 1791 bp DNA PLN 30-JUN-1996 DEFINITION Chaetoceros sp. 18S rRNA gene. ACCESSION X85390 NID g1418671 VERSION X85390.1 GI:1418671 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Chaetoceros sp. ORGANISM Chaetoceros sp. Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotaceae; Chaetoceros. REFERENCE 1 (bases 1 to 1791) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1791) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1791 /organism="Chaetoceros sp." /db_xref="taxon:49240" rRNA 1..1791 /product="18S ribosomal RNA" BASE COUNT 484 a 339 c 454 g 512 t 2 others BASE COUNT 484 a 339 c 454 g 512 t 1484 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AUAAAU-CUU UU-------- 121 -----ac-UU U-GA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGGUAG<-- -UCCCU-UA- C-U>AUUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGACCAU UC-AA|guuU cugC|CCUAU 601 CAGCUUU--G ACGGUAGU-( GUAUUGG)-A CU-ACCGU|G G-CUU-UAAC |GGGUAACGG 661 A|GGA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCC(-U UUC)GGGUCU -G-GC-UUUU GGAAUGAGA| GAAUU(U-UA 961 GAAU)CCA|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 C-CGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUAUGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUAU -ACC-AUAAA CUAUGCCGAC |UC|-AGGA- UGGGCGG-g- Ugca--(--- 1921 -UUUU----- -------)-- -ugc-cucgu CUGCACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAACCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUAUCAGGUC [CAG-ACAU- AGUGAGGAUu GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUcAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCAG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AAUc--- --|acacu-a aug-a(cuuu ---------- 2401 ---------- ---------- -----)ucau u-gg-u-ga| uu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gg-uuUC 2581 UUAGAGG]-- -|-------- -----GACAU GUA-GU(--- ---------- ----auaaa- 2641 )ACUACaGGA AGAUUGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGAAC 2701 CGCACGCGUG -UUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -CU------- -|-------- ---------- ---------- ---------- |-UCACCU-U 2821 GGCC(--GAG A-)GGCU--G GGAAAUCUUU UUAGC]---- ---------- ------AUGC 2881 AUC-GUGAUA GGGAUUGAUU AU(UGCAAUU A)UUAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAG UGGUCCGGUG AAG-ACUCGG GAu-ugugg- -c-a-auc-u 3061 a-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gc -agu----uu gu-cc----- acg-agaa|C UUGUCUAAAC 3181 CUUAUCACUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Cor.crioph 3273 bp RNA RNA 30-JUN-1996 DEFINITION Corethron criophilum.. ACCESSION No information KEYWORDS No information. SOURCE Corethron criophilum. ORGANISM Corethron criophilum. REFERENCE 1 (bases 1 to 1694) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85400 LOCUS CCRNAR18S 1798 bp DNA PLN 30-JUN-1996 DEFINITION C.criophylum 18S rRNA gene. ACCESSION X85400 NID g1418411 VERSION X85400.1 GI:1418411 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Corethron criophilum. ORGANISM Corethron criophilum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Corethraceae; Corethron. REFERENCE 1 (bases 1 to 1798) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1798 /organism="Corethron criophilum" /db_xref="taxon:49243" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 491 a 338 c 455 g 510 t 4 others BASE COUNT 491 a 338 c 455 g 510 t 1479 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGYCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAGC-Auu au-------- 121 -----ac-AG U-GA-A]--- --------|- --ACU|-GUG AAUGGCUCAU UAAAUCAGUC 181 AU-UAUcUAC AUGAUAA<-- -UUCC--UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---AGAUCAU UC-GA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-A UAC)AGGUCU -G-GC-UUUU GGAAUGAGA| GCAAG(U-UA 961 AAUC)GAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAgU-U- 1681 GGGGGUAUU| UGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGG-AAG- A-CAA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|A-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-a- auugu-(--- 1921 AUUAC----- -------)-- acaa-uccau CGGCACCUU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAACCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (UUGA)-UUU GUCUGC(UUA AUU)GCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGuc--- --|cagug-a aug-a(uuac ---------- 2401 ---------- ---------- -----)ucau u-ga-c-ug| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gU-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACUAAaGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGRU G-UCCUGGGC 2701 CGCACGCGCG -UUA-CACUG AUGCGU---- ---------- ---------- [UC-AGAAAG 2761 -UAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUU UGAAU]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUCGAUU AU(UGCAAUU A)UUAA-UCG UGAACGAGGA AUUCCUAGUA 2941 AACGC-ACG( UCAUCAA)CG UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-CCUCGG GAu-ugugg- uc-u-uuu-u 3061 c--------- ---------- ---------- --(UUAAUU- -)-------- ---------- 3121 ---------- ---------g -gaa----cu ga-cc----- gug-agaa|C UUGUCCAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Dit.bright 3273 bp RNA RNA 30-JUN-1996 DEFINITION Ditylum brightwelli.. ACCESSION No information KEYWORDS No information. SOURCE Ditylum brightwelli. ORGANISM Ditylum brightwelli. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85386 LOCUS DBRNAR18S 1800 bp DNA PLN 30-JUN-1996 DEFINITION D.brightwelli 18S rRNA gene. ACCESSION X85386 NID g1418685 VERSION X85386.1 GI:1418685 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Ditylum brightwelli. ORGANISM Ditylum brightwelli Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Lithodesmiaceae; Ditylum. REFERENCE 1 (bases 1 to 1800) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1800) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1800 /organism="Ditylum brightwelli" /strain="CCAP 1022/2" /db_xref="taxon:49249" rRNA 1..1800 /product="18S ribosomal RNA" BASE COUNT 472 a 361 c 474 g 490 t 3 others BASE COUNT 472 a 361 c 474 g 490 t 1476 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-AUu uu-------- 121 -----ac-UG U-GA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|UUG-U(UA GG)GCAAGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UCU)AGGUCU -G-GC-AAUU GGAAUGAGA| ACGAU(U-UA 961 AAUC)CCC|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGUC |UA|-GGGA- UCGGCGG-uc uguc--(--- 1921 -UUau----- -------)-- -gac-accgu CGGCACCUU- -ACGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AUUg--- --|cCGGC-a auC-a(ucu- ---------- 2401 ---------- ---------- -----)guau u-gc-u-gc| ug-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cg-auUC 2581 UUAGAGG]-- -|-------- -----GACGU USC-CC(--- ---------- ----cacaa- 2641 )GGCGAAGGA AGAUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ---------- [UC-AACGAG 2761 -CUU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAA A-)---CU-G GGCAAUCUUG UUAAC]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUG AU(UGUAAUU A)UUCA-UCU UGAACRAGGA AUUCCUAGUA 2941 AUCGC-AGA( UCAUCAA)UC UGCAG-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGMACCU ACCGAUUGAA UGGUCCGGUG AGG-AGUCGA GAu-ugugg- cu-u-ggu-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -gac----uu gg-cc----- gcg-aaaa|C UUUUCCGAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Euc.antarc 3273 bp RNA RNA 30-JUN-1996 DEFINITION Eucampia antarctica.. ACCESSION No information KEYWORDS No information. SOURCE Eucampia antarctica. ORGANISM Eucampia antarctica. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85389 LOCUS EARNAR18S 1798 bp DNA PLN 30-JUN-1996 DEFINITION E.antartica 18S rRNA gene. ACCESSION X85389 NID g1418693 VERSION X85389.1 GI:1418693 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Eucampia antarctica. ORGANISM Eucampia antarctica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Hemiaulaceae; Eucampia. REFERENCE 1 (bases 1 to 1798) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1798 /organism="Eucampia antarctica" /strain="3/a" /db_xref="taxon:49252" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 487 a 341 c 457 g 513 t BASE COUNT 487 a 341 c 457 g 513 t 1475 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-AUu uu-------- 121 ----uac-UU U-GA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAA<-- UUCCCU-UA- C-U>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCuUU--G AUGGUAAG-( GUAUUGG)-C UU-ACCAU|u G-CUA-UAAC |GGGUAACGG 661 A|GGA-U(CA GG)GUUUGAU U-CCG|GAGA GGGGGCU(UG AG-AAUU)GG CCACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-A UCU)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCG-UAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| UGU-AUUCCA -UAG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CAA-A-CU AAUGC(-GAA A)GC|AUCUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUGUGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUAC -ACC-AUAAA CCAUGCCGAC |UC|-AGGG- UUGACCG-g- cguu--(--- 1921 aUCAu----- -------)-- -gac-cuggu CAGAACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAA- AAGGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UUUUUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGuc--- --|C-GGa-u ugu-a(cuu- ---------- 2401 ---------- ---------- -----)uaca g-uc-u-ag| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gg-cuUC 2581 UUAGAGG]-- -|-------- -----GACAC CGA-GU(--- ---------- ---uaccaa- 2641 )GCUCGgGGA AGUUUGUGGC GAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUG UUAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGU( UCAUCAA)AC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-ugcgg- uu-u-agu-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -uac----uu ga-cu----- gug-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Lau.boreal 3273 bp RNA RNA 30-JUN-1996 DEFINITION Lauderia borealis.. ACCESSION No information KEYWORDS No information. SOURCE Lauderia borealis. ORGANISM Lauderia borealis. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85399 LOCUS LBRNAR18S 1808 bp DNA PLN 30-JUN-1996 DEFINITION L.borealis 18S rRNA gene. ACCESSION X85399 NID g1418977 VERSION X85399.1 GI:1418977 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Lauderia borealis. ORGANISM Lauderia borealis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Lauderiaceae; Lauderia. REFERENCE 1 (bases 1 to 1808) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1808) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1808 /organism="Lauderia borealis" /strain="CCAP 1044/1" /db_xref="taxon:49255" rRNA 1..1808 /product="18S ribosomal RNA" BASE COUNT 498 a 350 c 445 g 514 t 1 others BASE COUNT 498 a 350 c 445 g 514 t 1466 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-CCu uu-------- 121 -----ac-UU U-AA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AAUUUGU UUGAUAA<-- -UCCCU-UA- C-U>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UG-AA|guUU cugC|CCUAU 601 UAACUCCG-G ACGGUAUG-( GUAUUGG)-C UU-ACCGU|G G-UCG-UAAU |GGGUAACGA 661 A|AAG-U(UA GG)GCUUGAU U-UCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUACU-G(- ACA)CAGUG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-GC GG-GUCU(-C UAG)AGAUCU -G-CC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCAA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCG-UAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GcUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-C- 1681 GGGCAUAUU| UGU-AUUUCG -UUG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-CGA-AAG- A-CAA-A-CU ACUGC(-GAA A)GC|AUCUA UGAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAG CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UUGGaCG-U- uguu--(--- 1921 -UUUU----- -------)-- -gac-UcgCc CAGCACCGU- -GUGG(-GAA A)CCAU-UAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G ACU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UCACCAGGUC [CAG-ACAU- AAUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UUUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGUu--- --|cgaUG-a auc-a(uucu ---------- 2401 ---------- ---------- -----)ugau u-ca-a-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACgU CCA-UU(--- ---------- ---cuacaa- 2641 )GAUGGagGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -UAU------ -|-------- ---------- ---------- ---------- |ACAACCU-U 2821 GACC(--GAG A-)GGCCC-G GGUAAUCUUU UUAAU]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGUAAUU A)UUAA-UCU UAAACGAGGA AUUUCUAGUA 2941 AACGU-AUA( UCAUCAG)UA UACAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAG CGGUCCGAUA AAG-GCUCGG GAa-arguc- cu-c-guu-u 3061 c-c------- ---------- ---------- --(UUCACU- -)-------- ---------- 3121 ---------- --------gg -aga----cu ug-aa----- uuu-ugaa|C CUGUCUAAAU 3181 CUUAUCGCUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Nit.apicul 3273 bp RNA RNA 24-JAN-191 DEFINITION Nitzschia apiculata. ACCESSION No information KEYWORDS No information. SOURCE Nitzschia apiculata. ORGANISM Nitzschia apiculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87334 LOCUS NIZRRNAA 1789 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Nitzchi apiculata 16S-like ribosomal RNA, complete. ACCESSION M87334 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Nitzschia apiculata (sub_species Greg) rRNA. ORGANISM Nitzschia apiculata Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1789) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1762 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 469 a 346 c 468 g 506 t ORIGIN BASE COUNT 469 a 346 c 468 g 506 t 1484 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ Auaaau-auc uu-------- 121 -----ac-UU U-GA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG AAUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|GUUU CUGC|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u ugu)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GUGGGUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGCGG-A- -guu--(--u 1921 cauuuu---- -------)-- -guc-uccgc CAGCACCUU- -AUGA(-GAA A)UCAC-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-AGcu--- --|ugcau-a gug-a(auuu ---------- 2401 ---------- ---------- -----)ucac u-gu-g-ug| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-CUUC 2581 UUAGAGG]-- -|-------- -----GACGU GCA-UU(--- ---------- ---cuauua- 2641 )GAUGCAGGA AGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGUAU---- ---------- ---------- [uc-aacgag 2761 -uuu------ -|-------- ---------- ---------- ---------- |--UACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUU UGAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-ugugg- cg-a-guu-c 3061 c-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gg -aag----uu ug-uc----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Mel.varian 3273 bp RNA RNA 30-JUN-1996 DEFINITION Melosira varians.. ACCESSION No information KEYWORDS No information. SOURCE Melosira varians. ORGANISM Melosira varians. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85402 LOCUS MVRNAR18S 1779 bp DNA PLN 30-JUN-1996 DEFINITION M.varians 18S rRNA gene. ACCESSION X85402 NID g1419086 VERSION X85402.1 GI:1419086 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Melosira varians. ORGANISM Melosira varians Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Coscinodiscophycidae; Melosirales; Melosiraceae; Melosira. REFERENCE 1 (bases 1 to 1779) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1779) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1779 /organism="Melosira varians" /db_xref="taxon:49256" rRNA 1..1779 /product="18S ribosomal RNA" BASE COUNT 513 a 313 c 429 g 524 t BASE COUNT 513 a 313 c 429 g 524 t 1494 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGCGA-UAC GCUCGUAUUA AA|GAUUAAG 61 CCAUGCAUGU GU-CAGU|-- -----|---- ---(----)[ AUaaAA-C-u u--------- 121 -----uu-gu U-GA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAACAGUU 181 AU-AGUUUAU UUGACGU<-- --UCUU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---AAGUCAU AU-AA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUUG)-C CU-ACCAU|G G-CAC-UCAC |GGGUAACGG 661 G|AGA-U(UA GG)GUUUGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-A(- AUA)CAGGG- 781 A-GGU|A|-G UAACGAUGAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-UC GG-GCCU(-U UUC)AGGUCU -G-AC-AaUU GGAAUGAGA| ACGAU(G-UA 961 AACA)UCC|U -AUCAA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUaC aG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG AA|CAGU-U- 1681 GGGGGUAUU| UGU-AUUCCA -GUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGG-AAG- A-CAA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCACUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCAAC |UA|-GGGA- UCAUCAG-u- uguu--(--a 1921 UUUAu----- -------)-- -gac-acugg UGGCACCUU- -AUGA(-GAG A)UCA--AAG 1981 UC-UUUGGGU |-U|CuGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAAAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGG--AAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGUu--- --|acACu-a aug--(uuu- ---------- 2401 ---------- ---------- -----)-uau u-ug-u-gu| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAaGGA AGAUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AuGCAU---- ---------- ---------- [UC-AAUAAG 2761 -UCU------ -|-------- ---------- ---------- ---------- |--UUCCU-U 2821 GGCC(--GAG A-)GGCUUAG GGUAAACUUU U-AAU]---- ---------- ------AUGU 2881 uUC-GUGAUA GGGAUUGAAU CU(UGUAAUU A)UUAU-UCA UGAACGAGGA AUUCCUAGUA 2941 ACCGC-AGA( UCAUUAA)UC UGCAG-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUCCGGUG AGG-ACUGGA GAu-uaagg- ca-a-ucu-u 3061 u-c------- ---------- ---------- --(UUCACU- -)-------- ---------- 3121 ---------- --------gg -aag----ug cg-cc----- aug-agaa|C UUGUCCAAAU 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Pap.elegan 3273 bp RNA RNA 30-JUN-1996 DEFINITION Papiliocellulus elegans.. ACCESSION No information KEYWORDS No information. SOURCE Papiliocellulus elegans. ORGANISM Papiliocellulus elegans. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85388 LOCUS PERNAR18S 1802 bp DNA PLN 30-JUN-1996 DEFINITION P.elegans 18S rRNA gene. ACCESSION X85388 NID g1419147 VERSION X85388.1 GI:1419147 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Papiliocellulus elegans. ORGANISM Papiliocellulus elegans Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Cymatosiraceae; Papiliocellulus. REFERENCE 1 (bases 1 to 1802) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1802 /organism="Papiliocellulus elegans" /db_xref="taxon:49258" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 475 a 361 c 474 g 489 t 3 others BASE COUNT 475 a 361 c 474 g 489 t 1474 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-AAGU|-- -----|---- ---(----)[ AUaaAU-ACu uu-------- 121 -----ac-UU U-GA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCuUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|UAA-U(UA GG)GUUAGAU U-CCG|GAGA GGGGGCC(UG AG-AGAU)GG CCACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UCU)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCauUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UUGGCGG-a- cguu--(--C 1921 GUUUU----- -------)-- -gac-uccgu CAGCACCGU- -AUGU(-GAA A)ACA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCUG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGUu--- --|cCGCg-a guc-u(cuuu ---------- 2401 ---------- ---------- -----)agac u-gg-c-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACAU GGG-UU(--- ---------- ----auuaa- 2641 )AAUCCaGGA AGAUAGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -CUU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUG UUAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGAAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGGA UGGUCCGGUG AAG-CCUCGG GAu-ugugg- uu-g-ugc-u 3061 g-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gu -ggu----gc ga-cc----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUCU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.glacia 3273 bp RNA RNA 30-JUN-1996 DEFINITION Porosira glacialis.. ACCESSION No information KEYWORDS No information. SOURCE Porosira glacialis. ORGANISM Porosira glacialis. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85398 LOCUS PGRNAR18S 1800 bp DNA PLN 30-JUN-1996 DEFINITION P.glacialis 18S rRNA gene. ACCESSION X85398 NID g1419150 VERSION X85398.1 GI:1419150 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Porosira glacialis. ORGANISM Porosira glacialis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Porosira. REFERENCE 1 (bases 1 to 1800) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1800) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1800 /organism="Porosira glacialis" /strain="R.M.C. 22" /db_xref="taxon:49260" rRNA 1..1800 /product="18S ribosomal RNA" BASE COUNT 505 a 332 c 438 g 523 t 2 others BASE COUNT 505 a 332 c 438 g 523 t 1475 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUaaAU-AUu uu-------- 121 -----ac-UU U-AA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AAUUUAU UUGAUAA<-- -UCCCU-UA- C-U>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 UAACUUCG-G ACGGUAUG-( GUAUUGG)-C UU-ACCGU|G G-UCA-UAAU |GGGUAACGA 661 A|UAG-U(UA GG)GCUAGAU U-UCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUACU-G(- ACA)CAGUG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-GU GG-GUUU(-U UAC)AAAUCU -G-CC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCG-UAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGCGUAUU| CGU-AUUUCG -UUG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-CGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CGAA|G-GAU GUUUUCauUa 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UUGGGCG-U- uguu--(--- 1921 -UUUU----- -------)-- -gac-Ucguc CAGCACCGU- -AUGG(-GAA A)CCAU-UAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G ACU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCUgGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AAUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UUUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGUu--- --|cCGUg-a auc-a(uuuu ---------- 2401 ---------- ---------- -----)ugau u-ga-u-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACgU CCA-UU(--- ---------- ---cuacaa- 2641 )GAUGGagGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -UCU------ -|-------- ---------- ---------- ---------- |AAAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUU UUAAU]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGU-AUA( UCAUCAG)UA UACAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGGUCCGAUG AAC-ACCCGA GCg-cggac- uu-u-guu-u 3061 c-c------- ---------- ---------- --(UUCAUU- -)-------- ---------- 3121 ---------- --------gg -aga----uu aa-ga----- ccg-u-aa|C C-GUGUAAAU 3181 CUUAUCGGUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Pn.multis 3273 bp RNA RNA 24-JAN-191 DEFINITION Pseudo-nitzschia multiseries subsp. was Nitzschia pungens f. multiseries. ACCESSION No information KEYWORDS No information. SOURCE Pseudo-nitzschia multiseries subsp. was Nitzschia pungens f. multiseries. ORGANISM Pseudo-nitzschia multiseries. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U18241 LOCUS NPU18241 2044 bp DNA PLN 02-FEB-1995 DEFINITION Nitzschia pungens f. multiseries small subunit rRNA and 5.8S rRNA genes, partial sequence. ACCESSION U18241 KEYWORDS . SOURCE Nitzschia pungens f. multiseries. ORGANISM Nitzschia pungens f. multiseries Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia. REFERENCE 1 (bases 1 to 2044) AUTHORS Manhart,J.R., Fryxell,G.A., Villac,C.M. and Segura,L.Y. TITLE Pseudo-nitzschia pungens and P. multiseries (Bacillariophyceae): nuclear rDNAs and species boundaries JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2044) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (07-DEC-1994) James R. Manhart, Biology, Texas A&M University, Department of Biology, College Station, TX 77843-3258, USA STANDARD full automatic COMMENT NCBI gi: 642528 FEATURES Location/Qualifiers source 1..2044 /organism="Nitzschia pungens f. multiseries" /isolate="tka2" rRNA <1..1773 /product="small subunit ribosomal RNA" misc_RNA 1774..2000 /note="ITS1" /product="internal transcribed spacer" rRNA 2001..>2044 /product="5.8S rRNA" BASE COUNT 539 a 398 c 516 g 591 t ORIGIN BASE COUNT 465 a 334 c 460 g 517 t 1497 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~CAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ Auaaau-auu uu-------- 121 -----ac-uu u-ga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u cuu)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| UGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CAA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGUGG-A- -guu--(--u 1921 cguuuc---- -------)-- -guc-uccau cagcaccuu- -GUGA(-GAA A)UCAU-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-agca--- --|cgcau-a gug-u(uua- ---------- 2401 ---------- ---------- -----)ucac u-gu-g-ua| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ug-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU GCG-UU(--- ---------- ---cuauua- 2641 )GACGCAGGA AGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [uc-aacgag 2761 -uuc------ -|-------- ---------- ---------- ---------- |--UACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUU UGAAC]---- ---------- ------UUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-uguga- uu-a-guu-u 3061 c-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gg -aag----uu ug-uc----- acg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUA~~~~ ~~~~~~~~|| ||| // LOCUS Pn.pungens 3273 bp RNA RNA 24-JAN-191 DEFINITION Pseudo-nitzschia pungens subsp. was Nitzschia pungens f. pungens. ACCESSION No information KEYWORDS No information. SOURCE Pseudo-nitzschia pungens subsp. was Nitzschia pungens f. pungens. ORGANISM Pseudo-nitzschia pungens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U18240 LOCUS NPU18240 2075 bp DNA PLN 02-FEB-1995 DEFINITION Nitzschia pungens f. pungens small subunit rRNA and 5.8S rRNA genes, partial sequence. ACCESSION U18240 KEYWORDS . SOURCE Nitzschia pungens f. pungens. ORGANISM Nitzschia pungens f. pungens Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia. REFERENCE 1 (bases 1 to 2075) AUTHORS Manhart,J.R., Fryxell,G.A., Vilac,C.M. and Segura,L.Y. TITLE Pseudo-nitzschia pungens and P. multiseries (Bacillariophyceae): nuclear rDNAs and species boundaries JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2075) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (07-DEC-1994) James R. Manhart, Biology, Texas A&M University, Department of Biology, College Station, TX 77843-3258, USA STANDARD full automatic COMMENT NCBI gi: 642527 FEATURES Location/Qualifiers source 1..2075 /organism="Nitzschia pungens f. pungens" /isolate="F310" rRNA <1..1772 /product="small subunit ribosomal RNA" misc_RNA 1773..2031 /note="ITS1" /product="internal transcribed spacer 1" rRNA 2032..>2075 /product="5.8S rRNA" BASE COUNT 549 a 412 c 518 g 596 t ORIGIN BASE COUNT 464 a 338 c 459 g 514 t 1498 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~CAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ Auaaau-auu uu-------- 121 -----ac-uu u-ga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u cuu)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| UGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CAA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGCGG-A- -guc--(--u 1921 cguuuc---- -------)-- -guc-uccgu cagcaccuu- -GUGA(-GAA A)UCAU-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-agca--- --|aacau-a gug-u(uua- ---------- 2401 ---------- ---------- -----)ucac u-gu-g-ua| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ug-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU GCG-UU(--- ---------- ---cuauua- 2641 )GACGCAGGA AGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [uc-aacgag 2761 -uuc------ -|-------- ---------- ---------- ---------- |--UACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUU UGAAC]---- ---------- ------CUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-uguga- uu-a-guu-u 3061 c-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gg -aag----uu ug-uc----- acg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUA~~~~ ~~~~~~~~|| ||| // LOCUS Aul.ambigu 3273 bp RNA RNA 30-JUN-1996 DEFINITION Aulacoseira ambigua.. ACCESSION No information KEYWORDS No information. SOURCE Aulacoseira ambigua. ORGANISM Aulacoseira ambigua. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85404 LOCUS AARNAR18S 1847 bp DNA PLN 30-JUN-1996 DEFINITION A.ambigua 18S rRNA gene. ACCESSION X85404 NID g1418294 VERSION X85404.1 GI:1418294 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Aulacoseira ambigua. ORGANISM Aulacoseira ambigua Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Aulacoseiraceae; Aulacoseira. REFERENCE 1 (bases 1 to 1847) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1847) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1847 /organism="Aulacoseira ambigua" /db_xref="taxon:49234" rRNA 1..1847 /product="18S ribosomal RNA" BASE COUNT 483 a 358 c 498 g 505 t 3 others BASE COUNT 466 a 354 c 487 g 491 t 1475 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUGA-UAC GCUGUCAUU- AA|GACUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AuAAGA-Agu ---------- 121 -----ac--U C-GA-G]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU GU-AA|guUC cugC|CCUAU 601 CAGCUUCG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|AGA-U(CA GG)GUUUGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACGAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UCU)AGGUCU -G-GC-AAUU GGAAUGAGA| ACGAU(G-CA 961 AASA)CCC|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGUUU- 1681 GGGGAUAUU| CSU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGG-AAG- A-CGA-A-CG ACUGC(-GAA A)GC|AUUUA UCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CCAUGCCGAC |UA|-GGGA- UUUGCGG-U- uguu--(--C 1921 UUGUA----- -------)-- -gac-Uccgu aagCaccuU- -AUGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGRG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ---------- -[CCUGCUAA AU-agUc--- --|cgguG-a aug-a(guuu ---------- 2401 ---------- ---------- -----)ucau u-ga-c-cu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gU-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----GACUA- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-AUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -UCU------ -|-------- ---------- ---------- ---------- |AGAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UGAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUUGAAU AU(UGCAAUU A)UUAU-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAU-ugcgg- uc-c--gu-u 3061 c-c------- ---------- ---------- --(UUUACU- -)-------- ---------- 3121 ---------- --------gg -gau----gu gg-cu----- gug-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Aul.distan 3273 bp RNA RNA 30-JUN-1996 DEFINITION Aulacoseira distans.. ACCESSION No information KEYWORDS No information. SOURCE Aulacoseira distans. ORGANISM Aulacoseira distans. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85403 LOCUS ADRNAR18S 1802 bp DNA PLN 30-JUN-1996 DEFINITION A.distans 18S rRNA gene. ACCESSION X85403 NID g1418298 VERSION X85403.1 GI:1418298 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Aulacoseira distans. ORGANISM Aulacoseira distans Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Aulacoseiraceae; Aulacoseira. REFERENCE 1 (bases 1 to 1802) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1802 /organism="Aulacoseira distans" /db_xref="taxon:49235" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 471 a 347 c 488 g 494 t 2 others BASE COUNT 471 a 347 c 488 g 494 t 1473 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUGA-UAC GCUGUCAUUA AG|GACUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AuAAGA-A-a u--------- 121 -----ac--U C-GA-G]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU GU-AA|guUC cugC|CCUAU 601 CAGCUUCG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|AGA-U(CA GG)GUUUGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACGAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UGU)AGGUCU -G-GC-AAUU GGAAUGAGA| ACGAU(G-UA 961 AACA)CCC|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGUUU- 1681 GGGGAUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGG-AAG- A-CGA-A-CG ACUGC(-GAA A)GC|AUUUA UCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CCAUGCCGAC |UA|-GGGA- UUUGCGG-u- uguu--(--C 1921 UUGUA----- -------)-- -gac-accgu AAGCACCUU- -AUGA(-GAA A)UCA--AAG 1981 UG-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAR 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ---------- -[CYUgCUAA aU-AGuc--- --|cGGUg-a aug-a(uucu ---------- 2401 ---------- ---------- -----)ucau u-ga-c-cu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gU-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-AUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -UUU------ -|-------- ---------- ---------- ---------- |AGAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UGAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUUGAAU AU(UGCAAUU A)UUAU-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUUGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-ugcgg- uc-c--gu-u 3061 c-c------- ---------- ---------- --(UUGAUU- -)-------- ---------- 3121 ---------- --------gg -gau----gu gg-cu----- gug-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Cos.radiat 3273 bp RNA RNA 24-JAN-191 DEFINITION Coscinodiscus radiatus. ACCESSION No information KEYWORDS No information. SOURCE Coscinodiscus radiatus. ORGANISM Coscinodiscus radiatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X77705 LOCUS CR18SRR 1811 bp DNA PLN 22-FEB-1994 DEFINITION C.radiatus (CCMP 309) 18S rRNA gene. ACCESSION X77705 KEYWORDS 18S ribosomal RNA. SOURCE Coscinodiscus radiatus ORGANISM Coscinodiscus radiatus Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1811) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1811) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456329 FEATURES Location/Qualifiers source 1..1811 /organism="Coscinodiscus radiatus" /strain="CCMP 309" rRNA 1..1811 /product="18S ribosomal RNA" BASE COUNT 503 a 330 c 453 g 523 t 2 others ORIGIN BASE COUNT 503 a 330 c 453 g 523 t 1464 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ cuaauugga- ---------- 121 -auugac-ua uuga-a]--- --------|- --ACU|-GUG AACUGCUCAA UAAAUCGGUU 181 AU-AAUUUAC UUGAUGA<-- -UUUUU-UG- C-U>ACUUGG -AUAACUGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---ACAUCAU CC-AA|guuu ccgc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUGACGG 661 A|UGG-U(UA GG)GCUGGAC C-CCG|GAGA GsGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUACA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GU-GCCC(-u cau)GGGUAU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCAA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCG-UAA)U UCCA-G-|CU CCAAUAGCAU A|UAUUAA-A GUUG--UUGU AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GUGGGUAUU| UGU-AUUGCG -AUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-CGC-AAG- A-CAG-A-CA ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UUGGCAG-G- aguu--(--- 1921 aauau----- -------)-- -gac-ccugu cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G UCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUUAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |AGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-aguu--- --|acaug-a aug-a(uuuu ---------- 2401 ---------- ---------- -----)ucau u-ca-u-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---au-cuUC 2581 UUAGAGG]-- -|-------- -----GACuU UUG-GU(--- ---------- ----gacua- 2641 )ACCAAAGGA AGUUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGUG -CUA-CACUG AUGCAU---- ---------- ---------- [uc-aacaag 2761 -cau------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGUC(--GAA U-)GGCCU-G GGCAAUCUUG UAAAC]---- ---------- ------GUGC 2881 AUC-AUGAUA GGGAUAGAUU AU(UGAAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-AGA( UCAUCAA)UC UGUGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-ACUCGG GAc-cgugu- uu-g-gau-g 3061 u-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------ga -ugu----cu ga-uu----- aug-ggaa|C UUGUcuGAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Ste.brosch 3273 bp RNA RNA 24-JAN-191 DEFINITION Stephanopyxis cf. broschii. ACCESSION No information KEYWORDS No information. SOURCE Stephanopyxis cf. broschii. ORGANISM Stephanopyxis cf. broschii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87330 LOCUS SYXRRNAA 1805 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Stephanopyxis cf. broschii 16S-like ribosomal RNA, complete. ACCESSION M87330 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Stephanopyxis broschii (sub_species Grun) rRNA. ORGANISM Stephanopyxis broschii Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1805) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1778 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 480 a 351 c 474 g 500 t ORIGIN BASE COUNT 480 a 351 c 474 g 500 t 1468 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUGA-UAC GCUCGCAUUU AA|GAUUAAG 61 CCAUGCAUGU GU-CAGU|-- -----|---- ---(----)[ Uuaaaaau-- ---------- 121 -----uu-au uuga-g]--- --------|- --ACU|-GUG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- UUCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---AGAUCAU AU-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|AGA-U(CA GG)GUUUGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACGAUUAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u uuc)AGGUCU -G-GC-AAUU GGAAUGAGA| ACGAU(G-UA 961 AACA)CCC|U -AUCGA-GG- ACC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUGGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUCA -ACC-AUAAA CUAUGCCAAC |UA|-GGGA- UUAGCGG-U- cguu--(--u 1921 auuagu---- -------)-- -gac-uccgu uagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|- GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ---------- -[CCUGCUAA AU-AGuc--- --|cugug-a aug-a(auuu ---------- 2401 ---------- ---------- -----)ucau u-ga-c-aa| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CUUAG-AU G-UCCUGGGC 2701 GGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [uc-aacaag 2761 -cau------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUU GAAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUCCGGUG AGG-ACUCGG GAu-ugaug- uu-a-gcu-u 3061 c-c------- ---------- ---------- --(uuuguu- -)-------- ---------- 3121 ---------- --------gg -gac----uu ga-ua----- aug-cgaa|C UCGUCCAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Cym.belgic 3273 bp RNA RNA 24-JAN-191 DEFINITION Cymatosira belgica. ACCESSION No information KEYWORDS No information. SOURCE Cymatosira belgica. ORGANISM Cymatosira belgica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85387 LOCUS CBRNAR18S 2317 bp DNA PLN 30-JUN-1996 DEFINITION C.belgica 18S rRNA gene. ACCESSION X85387 NID g1418410 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Cymatosira belgica. ORGANISM Cymatosira belgica Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae; Centrales; Cymatosiraceae; Cymatosira. REFERENCE 1 (bases 1 to 2317) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 2317) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG BASE COUNT 480 a 356 c 470 g 496 t 1471 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUaaAU-AUu uu-------- 121 -----ac-UU U-GA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAA<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAC U-CCG|GAGA GGGGGCC(UG AG-AGAU)GG CCACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UCU)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGAUAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|RUUUA UCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UUGGCGG-aC -guu--(--- 1921 cuuau----- -------)-- -gac-uucgu cagCaccgU- -AUGU(-GAA A)ACA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-aguu--- --|ccgug-a gug-a(uuuc ---------- 2401 ---------- ---------- -----)ucac u-ga-c-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACAU GGG-UU(--- ---------- ----AUAAA- 2641 )AAUCCAGGA AGAUAGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [UC-AACGAG 2761 -CUU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGCAAUCUUG UUAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGAAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGGA UGGUCCGGUG AAG-CCUCGG GAU-ugugg- uu-u-ggc-u 3061 g-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gu -ggc----cg ua-cc----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUCU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Rhi.setige 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhizosolenia setigera. ACCESSION No information KEYWORDS No information. SOURCE Rhizosolenia setigera. ORGANISM Rhizosolenia setigera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87329 LOCUS RIZRRNAA 1800 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Rhizosolenia setigera 16S-like ribosomal RNA, complete. ACCESSION M87329 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Rhizosolenia setigera (sub_species Brightw) rRNA. ORGANISM Rhizosolenia setigera Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1800) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1773 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 503 a 341 c 450 g 506 t ORIGIN BASE COUNT 503 a 341 c 450 g 506 t 1473 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AUAAAUAU-U uu-------- 121 -----au-AG U-AA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAUCAGUA 181 UU-AAUUUAC AUGAUAA<-- --UCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---AGAUCAU UC-AA|guuu cugc|CCUAU 601 UAGAUUUG-G AUGGCUGU-( GUAUUGG)-A CA-GCCAU|G U-CUU-UGAU |GGGUAACGG 661 A|GAA-U(UA GG)GUCCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GUCU(-a cua)AGAUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAAGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCAAC |UA|-GAGA- UCGGCAG-U- uguu--(--- 1921 aauau----- -------)-- -gac-acugu cggcaucuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGC-UGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (UUGA)-UUU GUCUGC(UUA AUU)GCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ---------- -[CCUGCUAA AU-AAuc--- --|acgug-a aug-a(auua ---------- 2401 ---------- ---------- -----)ucau u-ga-u-ga| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gg-UUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCAAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ---------- [uc-aacgag 2761 -cuu------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCU--G GGCAAUCUUU UAAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-CCUCGG GAu-ugugg- uc-u-ggu-u 3061 g-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gg -aac----cu ga-cu----- gug-agaa|C CUGUCCAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Ske.cost.1 3273 bp RNA RNA 30-JUN-1996 DEFINITION Skeletonema costatum.. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema costatum. ORGANISM Skeletonema costatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE rRNAs Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85395 LOCUS SCRNAR18S 1798 bp DNA PLN 30-JUN-1996 DEFINITION S.costatum 18S rRNA gene. ACCESSION X85395 NID g1419238 VERSION X85395.1 GI:1419238 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Skeletonema costatum. ORGANISM Skeletonema costatum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 1 (bases 1 to 1798) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1798 /organism="Skeletonema costatum" /strain="CCAP 1077/3" /db_xref="taxon:2843" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 490 a 344 c 458 g 506 t BASE COUNT 490 a 344 c 458 g 506 t 1475 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AUAAGAUACU UU-------- 121 -----a---U C-GA-A]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAA<-- -UCCCU-CA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UAUAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUGG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CUU-UAAC |GGGUAACGA 661 A|UUG-U(UA GG)GCAAGAU U-UCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UAC)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-AGGA- UUGGCGG-U- Uguu--(--- 1921 -uuuu----- -------)-- -gac-uccgu CAGCACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAACCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-U)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGac--- --|ccgcg-a aua-g(cuuu ---------- 2401 ---------- ---------- -----)uuau u-gg-c-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU UCA-UU(--- ---------- ---cuacaa- 2641 )GAUGAAGGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -UUA-CACUG AUGCAC---- ---------- ----(----) [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UUAAC]---- ---------- ------UUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AUCGC-AGU( UCAUCAA)AC UGCAA-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-AGUCGA GAu-ugugg- au-u-agc-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -ggc----uu au-cc----- gcg-agaa|C CUCUCCAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Ske.cost.2 3273 bp RNA RNA 26-FEB-1991 DEFINITION Skeletonema costatum. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema costatum. ORGANISM Skeletonema costatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Medlin,L., Elwood,H.J., Stickel,S. and Sogin,M.L. TITLE The characterization of enzymatically amplified eukaryotic JOURNAL Gene 71, 491-499 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M54988 X52006 LOCUS SKERG16SL 1798 bp DNA PLN 26-FEB-1991 DEFINITION Skeletonema costatum small subunit ribosomal RNA (16S-like rRNA) gene. ACCESSION M54988 NID g169893 KEYWORDS protist; ribosomal RNA small subunit. SOURCE Skeletonema costatum pacifica (isolate Univ. of British Columbia culture # 18/C) DNA. ORGANISM Skeletonema costatum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Sceletonemataceae; Sceletonema. REFERENCE 1 (bases 1 to 1798) AUTHORS Medlin,L., Elwood,H.J., Stickel,S. and Sogin,M.L. TITLE The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding JOURNAL Gene 71, 491-499 (1988) MEDLINE 89138025 BASE COUNT 491 a 343 c 457 g 504 t 1478 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AUAAGAUACU UU-------- 121 -----a---U C-GA-A]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAA<-- -UCYCU-CA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UAUAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUGG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CUU-UAAC |GGGUAACGA 661 A|UUG-U(UA GG)GCAAGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UAC)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-AGGA- UUGGCGG-U- Uguu--(--- 1921 -uuuu----- -------)-- -gac-uccgu CAGUACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAACCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-U)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGac--- --|ccgcg-a aua-g(cuuu ---------- 2401 ---------- ---------- -----)uuau u-gg-c-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU UCA-UU(--- ---------- ---cuacaa- 2641 )GAUGAAGGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -UUA-CACUG AUGCAC---- ---------- ----(----) [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UUAAC]---- ---------- ------UUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AUCGC-AGU( UCAUCAA)AC UGCAA-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-AGUCGA GAu-ugugg- au-u-agc-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -ggc----uu au-cc----- gcg-agaa|C CUCUCCAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Ske.pseu.1 3273 bp RNA RNA 30-JUN-1996 DEFINITION Skeletonema pseudocostatum. str. CCMP 1077/6. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema pseudocostatum. str. CCMP 1077/6. ORGANISM Skeletonema pseudocostatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE rRNAs Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit JOURNAL Unpublished STANDARD No information COMMENTS Organism information Culture collection: CCM P 1077 Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85393 LOCUS SPRNAR18S 1798 bp DNA PLN 30-JUN-1996 DEFINITION S.pseudocostatum (strain CCMP 1077/6) 18S rRNA gene. ACCESSION X85393 NID g1419262 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Sceletonemataceae; Sceletonema. REFERENCE 1 (bases 1 to 1798) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1798 /organism="Skeletonema pseudocostatum" /strain="CCAP 1077/6" /db_xref="taxon:41457" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 490 a 345 c 456 g 506 t 1 others BASE COUNT 490 a 345 c 456 g 506 t 1476 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|RCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AUAAGAUACU UU-------- 121 -----a---U C-GA-A]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAA<-- -UCCCU-CA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UAUAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUGG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CUU-UAAC |GGGUAACGA 661 A|UUG-U(UA GG)GCAAGAU U-UCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UAC)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-AGGA- UUGGCGG-U- Uguu--(--- 1921 -uuuu----- -------)-- -gac-uccgu CAGCACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAACCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-U)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGac--- --|ccgcg-a aug-g(cuuu ---------- 2401 ---------- ---------- -----)ucau u-gg-c-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU UCA-UU(--- ---------- ---cuacaa- 2641 )GAUGAAGGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -UUA-CACUG AUGCAC---- ---------- ----(----) [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UUAAC]---- ---------- ------UUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AUCGC-AGU( UCAUCAA)AC UGCAG-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-AGUCGA GAu-ugugg- au-u-agc-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -ggc----uu uu-cc----- gcg-agaa|C CUCUCCAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Ske.pseu.2 3273 bp RNA RNA 30-JUN-1996 DEFINITION Skeletonema pseudocostatum. str. CCMP 1077/7. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema pseudocostatum. str. CCMP 1077/7. ORGANISM Skeletonema pseudocostatum. REFERENCE 1 (bases 1 to 1694) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE rRNAs Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit JOURNAL Unpublished STANDARD No information COMMENTS Organism information Culture collection: CCM P 1077 Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85394 LOCUS SPRNA18SR 1798 bp DNA PLN 30-JUN-1996 DEFINITION S.pseudocostatum (strain CCMP 1077/7) 18S rRNA gene. ACCESSION X85394 NID g1419261 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Sceletonemataceae; Sceletonema. REFERENCE 1 (bases 1 to 1798) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1798) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1798 /organism="Skeletonema pseudocostatum" /strain="CCAP 1077/7" /db_xref="taxon:41457" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 490 a 345 c 457 g 506 t BASE COUNT 490 a 345 c 457 g 506 t 1475 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ AUAAGAUACU UU-------- 121 -----a---U C-GA-A]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAA<-- -UCCCU-CA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UAUAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUGG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CUU-UAAC |GGGUAACGA 661 A|UUG-U(UA GG)GCAAGAU U-UCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UAC)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-AGGA- UUGGCGG-U- Uguu--(--- 1921 -uuuu----- -------)-- -gac-uccgu CAGCACUGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAACCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-U)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGac--- --|ccgcg-a aug-g(cuuu ---------- 2401 ---------- ---------- -----)ucau u-gg-c-ga| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU UCA-UU(--- ---------- ---cuacaa- 2641 )GAUGAAGGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -UUA-CACUG AUGCAC---- ---------- ----(----) [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UUAAC]---- ---------- ------UUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AUCGC-AGU( UCAUCAA)AC UGCAG-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-AGUCGA GAu-ugugg- au-u-agc-u 3061 c-c------- ---------- ---------- --(UUUAUU- -)-------- ---------- 3121 ---------- --------gg -ggc----uu uu-cc----- gcg-agaa|C CUCUCCAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Str.thames 3273 bp RNA RNA 30-JUN-1996 DEFINITION Streptotheca thamesis.. ACCESSION No information KEYWORDS No information. SOURCE Streptotheca thamesis. ORGANISM Streptotheca thamesis. REFERENCE 1 (bases 1 to 1694) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE rRNAs Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85385 LOCUS STRNAR18S 1802 bp DNA PLN 30-JUN-1996 DEFINITION S.thamesis 18S rRNA gene. ACCESSION X85385 NID g1419302 VERSION X85385.1 GI:1419302 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Streptotheca thamesis. ORGANISM Streptotheca thamesis Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Streptothecaceae; Streptotheca. REFERENCE 1 (bases 1 to 1802) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1802 /organism="Streptotheca thamesis" /strain="CCAP 1076/1" /db_xref="taxon:49264" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 473 a 365 c 478 g 486 t BASE COUNT 473 a 365 c 478 g 486 t 1471 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-AUU UU-------- 121 -----AC-UG U-GA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|UUG-U(UA GG)GCAAGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UCU)AGGUCU -G-GC-AAUU GGAAUGAGA| ACGAU(U-UA 961 AAUC)CCC|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCauUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGuC |UA|-GGGA- UCGGCGG-u- Cgcu--(--- 1921 CUUAU----- -------)-- -gac-accgu CGGCACCUU- -ACGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AAUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UUUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AUCg--- --|cCGGa-a auc-a(cuuu ---------- 2401 ---------- ---------- -----)ugau u-ac-u-gc| ug-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cg-auUC 2581 UUAGAGG]-- -|-------- -----GACUU CUG-CC(--- ---------- ---cuacaa- 2641 )GGCGGaGGA AGACGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAA A-)GGCCU-G GGCAAUCUUG UUAAC]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUG CU(UGAAAUU A)UUCA-UCU UGAACGAGGA AUUCCUAGUA 2941 AUCGC-AGA( UCAUCAA)UC UGCAG-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-ACUCGG GAu-ugugg- cu-U-ggu-u 3061 c-c------- ---------- ---------- --(UUCAUU- -)-------- ---------- 3121 ---------- --------gg -gac----uu gg-cu----- gug-aaaa|C UUGUCCGAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Tha.eccent 3273 bp RNA RNA 30-JUN-1996 DEFINITION Thalassiosira eccentrica.. ACCESSION No information KEYWORDS No information. SOURCE Thalassiosira eccentrica. ORGANISM Thalassiosira eccentrica. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85396 LOCUS TERNAR18S 1802 bp DNA PLN 30-JUN-1996 DEFINITION T.eccentrica 18S rRNA gene. ACCESSION X85396 NID g1419322 VERSION X85396.1 GI:1419322 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Thalassiosira eccentrica. ORGANISM Thalassiosira eccentrica Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 1 (bases 1 to 1802) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1802 /organism="Thalassiosira eccentrica" /db_xref="taxon:49261" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 480 a 351 c 461 g 508 t 2 others BASE COUNT 480 a 351 c 461 g 508 t 1473 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAACU-CUU UU-------- 121 -----AC-UU UGAA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CUU-UAAC |GGGUAACGA 661 A|UUG-U(UA GG)GCAAGAU U-UCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UAC)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UCGGUGG-UC Uguu--(--- 1921 -UUUU----- -------)-- -gac-Uccau cggCaccgU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGu|G GAAC-UGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-U)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ---------- -[CCUGCUAA AU-aguu--- --|cuacu-a aug-g(uuuu ---------- 2401 ---------- ---------- -----)ucau u-gg-u-aa| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU UCA-UU(--- ---------- ---CUACAA- 2641 )GAUGAAGGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -UUA-CACUG AUGCAC---- ---------- ----(----) [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UUAAC]---- ---------- ------AUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AUCGC-GGU( UCAUCAA)AC CGCAA-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-ACUCGG GAU-ugkgg- uu-U-ggc-u 3061 c-c------- ---------- ---------- --(UUCAUU- -)-------- ---------- 3121 ---------- --------gg -ggc----cu ga-cc----- gcg-agaa|C UUGUCCGAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Tha.rotula 3273 bp RNA RNA 30-JUN-1996 DEFINITION Thalassiosira rotula.. ACCESSION No information KEYWORDS No information. SOURCE Thalassiosira rotula. ORGANISM Thalassiosira rotula. REFERENCE 1 (bases 1 to 1694) AUTHORS Wellbrock,U. Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and TITLE the fossil record and from nuclear-encoded small-subunit rRNAs Evolution of the diatoms (Bacillariophyta):Implications from JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X85397 LOCUS TRRNAR18S 1802 bp DNA PLN 30-JUN-1996 DEFINITION T.rotula 18S rRNA gene. ACCESSION X85397 NID g1419339 VERSION X85397.1 GI:1419339 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Thalassiosira rotula. ORGANISM Thalassiosira rotula Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 1 (bases 1 to 1802) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 1802) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG FEATURES Location/Qualifiers source 1..1802 /organism="Thalassiosira rotula" /strain="CCAP 1085/4" /db_xref="taxon:49265" rRNA 1..1802 /product="18S ribosomal RNA" BASE COUNT 479 a 352 c 460 g 509 t 2 others BASE COUNT 479 a 352 c 460 g 509 t 1473 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAACU-CUU UU-------- 121 -----AC-UU UGAA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guUU cugC|CCUAU 601 CAGCUUUG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CUU-UAAC |GGGUAACGA 661 A|UUG-U(UA GG)GCAAGAU U-UCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-U UAC)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GU- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGYC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUCG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-CGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCauUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UCGGAGG-U- Uguu--(--- 1921 -UUUU----- -------)-- -gac-Uccuu CGGCACCGU- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)C GGU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAAC-UGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-U)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |uGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCGCCG|--- ---------- 2341 ---------- -[CCUgCUAA aU-AGUu--- --|cUACU-a auc-g(uuuu ---------- 2401 ---------- ---------- -----)ugau u-gg-u-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACgU UCA-UU(--- ---------- ---cuacaa- 2641 )GAUGAagGA AGAUGGCGGC AAUAACAGGU CUGUGA|UGC C|CU-UUGAU G-UCCUGGGC 2701 CGCACGCGCG -UUA-CACUG AUGCAc---- ---------- ----(----) [UC-AACGAG 2761 -CAU------ -|-------- ---------- ---------- ---------- |AUAACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGUAAUCUUG UUAAC]---- ---------- ------UUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AUCGC-GGU( UCAUCAA)AC CGCAA-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AGG-ACUCGG GAu-ugugg- cu-U-ggc-u 3061 c-c------- ---------- ---------- --(UUCAUU- -)-------- ---------- 3121 ---------- --------gg -ggc----cu ga-cc----- gcg-agaa|C UUGUCCGAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Ast.glacia 3273 bp RNA RNA 24-JAN-191 DEFINITION Asterionellopsis glacilia. ACCESSION No information KEYWORDS No information. SOURCE Asterionellopsis glacilia. ORGANISM Asterionellopsis glacilia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X77701 LOCUS AG16SRR 1795 bp DNA PLN 22-FEB-1994 DEFINITION A.glacialis (CCAP 1009/1) 18S rRNA gene. ACCESSION X77701 KEYWORDS 18S ribosomal RNA. SOURCE Asterionellopsis glacilia ORGANISM Asterionellopsis glacilia Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1795) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1795) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456315 FEATURES Location/Qualifiers source 1..1795 /organism="Asterionellopsis glacilia" /strain="CCAP 1009/1" /note="Cast" rRNA 1..1795 /product="18S ribosomal RNA" BASE COUNT 472 a 341 c 466 g 516 t ORIGIN BASE COUNT 472 a 341 c 466 g 516 t 1478 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-CUU uu-------- 121 -----AC-UU U-GA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AAUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCA(-u uuu)UGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGCGG-U- uguu--(--c 1921 guuuu----- -------)-- -gac-uccgu cagcaccuu- -AUGA(-GAA A)UCAC-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-aguu--- --|gggug-a aug-a(cucg u--------- 2401 ---------- ---------- -----)ucau u-ga-c-ua| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU GCA-UG(--- ---------- ---uuucaa- 2641 )AAUGCAGGA GGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuuU----- -|-------- ---------- ---------- ---------- |UGUUCCU-U 2821 GGCC(--GAG A-)GGCUG-G GG-AAUCUUG UUAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-uguga- cu-g-uuc-u 3061 g-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gu --gg----uc gg-uu----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Fra.striat 3273 bp RNA RNA 24-JAN-191 DEFINITION Fragilaria striatula. ACCESSION No information KEYWORDS No information. SOURCE Fragilaria striatula. ORGANISM Fragilaria striatula. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X77704 LOCUS FS18SRR 1789 bp DNA PLN 22-FEB-1994 DEFINITION F.striatula (CCAP 1029/18) 18S rRNA gene. ACCESSION X77704 KEYWORDS 18S ribosomal RNA. SOURCE Fragilaria striatula ORGANISM Fragilaria striatula Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1789) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1789) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456331 FEATURES Location/Qualifiers source 1..1789 /organism="Fragilaria striatula" /strain="CCAP 1029/18" /note="Lyngb" rRNA 1..1789 /product="18S ribosomal RNA" BASE COUNT 476 a 339 c 471 g 502 t 1 others ORIGIN BASE COUNT 476 a 339 c 471 g 502 t 1485 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-CUU uu-------- 121 -----AC-UU U-GA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAyUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u uau)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- ACC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-AAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGCGG-U- cguu--(--- 1921 guauu----- -------)-- -gac-uccgu cagcaccuu- -AUGA(-GAA A)UCAC-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCGUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-aguc--- --|ggguu-a aug-a(auuu ---------- 2401 ---------- ---------- -----)ucau u-gg-c-ua| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU GCG-UU(--- ---------- ---uuauaa- 2641 )AACGCAGGA AGAUACGGGC AAAAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuu------ -|-------- ---------- ---------- ---------- |---ACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGAAAUCU-G UGAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAG)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-uguga- ug-a-guu-u 3061 c-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gg -gga----uu ug-uc----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Rha.belgic 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhaphoneis belgicae. ACCESSION No information KEYWORDS No information. SOURCE Rhaphoneis belgicae. ORGANISM Rhaphoneis belgicae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X77703 LOCUS RB18SRR 1790 bp DNA PLN 22-FEB-1994 DEFINITION R.belgica (Grun.) 18S rRNA gene. ACCESSION X77703 KEYWORDS 18S ribosomal RNA. SOURCE Rhaphoneis belgicae ORGANISM Rhaphoneis belgicae Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1790) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1790) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456357 FEATURES Location/Qualifiers source 1..1790 /organism="Rhaphoneis belgicae" /note="(Grun.) Grun" rRNA 1..1790 /product="18 S ribosomal RNA" BASE COUNT 469 a 348 c 470 g 501 t 2 others ORIGIN BASE COUNT 469 a 348 c 470 g 501 t 1485 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-CUC au-------- 121 -----AC-UU U-GA-A]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- CACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGCAACGG 661 A|GGA-U(UA GG)GUUCGGU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUS 721 (-CAAG-)GA A-GGCAGCA| GGU--CC-GC AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u ugu)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUUSA-GG- AUC>AAUUGG AG|GGCAA-G UC-UUGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU U|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGCGG-G- cguu--(--c 1921 guuuu----- -------)-- -gac-uccgu cagcaccuu- -AUGA(-GAA A)UCAC-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUGU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)UCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-aguu--- --|gggcg-a aug-a(uuu- ---------- 2401 ---------- ---------- -----)ucau u-gg-u-ua| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU GCA-UU(--- ---------- ---ucauaa- 2641 )GAUGCAGGA GGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -ucc------ -|-------- ---------- ---------- ---------- |--UUCCU-U 2821 GGCC(--GAG A-)GGCCU-G GGGAAUCUUU UUAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-AGA( UCAUCAA)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-uguga- cc-a-auu-c 3061 c-c------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- --------gg -gga----uu gg-uc----- acg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Tha.nitzsc 3273 bp RNA RNA 24-JAN-191 DEFINITION Thalassionema nitzschioides. ACCESSION No information KEYWORDS No information. SOURCE Thalassionema nitzschioides. ORGANISM Thalassionema nitzschioides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X77702 LOCUS TN18SRR 1782 bp DNA PLN 22-FEB-1994 DEFINITION T.nitzschioides (CCAP 1084/1) 18S rRNA gene. ACCESSION X77702 KEYWORDS 18S ribosomal RNA. SOURCE Thalassionema nitzschioides ORGANISM Thalassionema nitzschioides Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1782) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1782) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456372 FEATURES Location/Qualifiers source 1..1782 /organism="Thalassionema nitzschioides" /strain="CCAP 1084/1" /note="(Grun.). V.H" rRNA 1..1782 /product="18S ribosomal RNA" BASE COUNT 472 a 338 c 468 g 504 t ORIGIN BASE COUNT 472 a 338 c 468 g 504 t 1491 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ AUAAAU-CUC uu-------- 121 -----AC-CU U-UA-A]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUCAGUU 181 AU-AAUUUAU UUGAUAG<-- -UCCCU-UA- C-U>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---GGAUCAU UC-AA|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|AAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- ---------- ---------- ---------| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CC GG-GCCU(-u ugu)AGGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AACC)CCU|U -AUCGA-GG- ACC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCG-UAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- ---------- ---------- ---------- ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCCA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |AA|-GGGA- UUGGCGG-U- cguu--(--- 1921 guauu----- -------)-- -gac-cccgu cagcaccuu- -AUGA(-GAA A)UCAC-AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- ---------- ---------- 2221 ---------- ---------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ---------- -[CCUGCUAA AU-aguu--- --|uugcu-a aug-a(uuuu ---------- 2401 ---------- ---------- -----)ucau u-gg-u-au| cgu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-cuUC 2581 UUAGAGG]-- -|-------- -----GACGU GCG-UU(--- ---------- ---cuauua- 2641 )GACGCAGGA AGAUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -ugu------ -|-------- ---------- ---------- ---------- |---ACCU-U 2821 GGCC(--GAG A-)GGCCU-G GGAAAUCU-G UGAAC]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AGA( UCAUCAG)UC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-CCUCGG GAu-uguga- ug-a-guu-u 3061 c-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- --------gg -gga----uu ug-uc----- gcg-agaa|C UUGUCUAAAC 3181 CUUAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Bicoso 3273 bp RNA RNA 13-JAN-1999 DEFINITION Bicosoecida. ACCESSION No information KEYWORDS No information. SOURCE Bicosoecida. ORGANISM Bicosoecida. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Caf.roenbe 3273 bp RNA RNA 24-JAN-191 DEFINITION Cafeteria roenbergensis. ACCESSION No information KEYWORDS No information. SOURCE Cafeteria roenbergensis. ORGANISM Cafeteria roenbergensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L27633 LOCUS CFTDLRRNA 1718 bp ss-rRNA RNA 22-MAR-1994 DEFINITION Cafeteria roenbergensis 16S-like ribosomal RNA (16S-like rRNA). ACCESSION L27633 KEYWORDS 16S-like rRNA; 16S-like ribosomal RNA. SOURCE Cafeteria roenbergensis rRNA. ORGANISM Cafeteria roenbergensis Eukaryota; Protista; Bicosoecea. REFERENCE 1 (bases 1 to 1718) AUTHORS Leipe,D.D., Wainright,P.O., Gunderson,J.H., Porter,D., Patterson,D.J., Valois,F., Himmerich,S. and Sogin,M.L. TITLE The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis JOURNAL Phycologia (1994) In press STANDARD full automatic COMMENT NCBI gi: 463044 FEATURES Location/Qualifiers primer_bind 1..21 /note="residues correspond to 5' amplification primer and were not determined from coding region" primer_bind 1695..1718 /note="residues correspond to 3' amplification primer and were not determined from coding region" source 1..1718 /organism="Cafeteria roenbergensis" /sequenced_mol="rRNA" BASE COUNT 459 a 349 c 451 g 444 t 15 others ORIGIN BASE COUNT 459 a 349 c 451 g 444 t 1570 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgaaa gc-------- 121 ---------- --ga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- ---uuu-uc- c-u>AUAUGG -AUAACCGUR G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- ---------- ---------- 301 ---gguucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-A(- aag)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 ---accg-ac gg-guga(-c uua)aug-uc -g-cC-CAUU GGAAUGAGG| ACAAU(U-UA 961 AAAC)CCU|U -ACCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA-U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 A-UUA-AAG- A-UGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUCAGGGGAU CGAA--GAG- G(A-UUAG-A -UAC)C-CUC 1861 GUAGU|CUUG -ACC-AUAAA CUAUGCCGAC |UC|-AGGA- UUGGCAC-C- cuuu------ 1921 uuuaa----- ---------- -cag-ggugu cagcacugu- -AUGA(-AAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- GGUGAGGAUU GAC-AGA(UU -GAAAG-G)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGAUA ACGAACGAGA CCUCCG|--- ---------- 2341 ---------- -[ccuacuag ucuagau--- --|--guu-u cgu-c(ugcg ---------- 2401 ---------- ---------- -----)gacg g-ua-r-y-| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-cuUC 2581 CUAGAGG]-- -|-------- -----GACUA UGG-UC(--- ---------- ----guuua- 2641 )GGCCAUGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCUGGU---- ---------- ----(----) [gc-aacaag 2761 -uguc----- -|-------- ---------- ---------- ---------- |uacacgu-u 2821 ggcc(ucgag a-)ggccu-g cgcaaucuug -gaac]---- ---------- ------GCCA 2881 GCC-GUGAUG GGGAUAGGUU CU(UGCAAUU U)UUAA-UCU UCAACGAGGA AUUCCUAGUA 2941 AACGC-AAR( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGGA UGGUCCGGUG AAG-CCCUCG GAu-cggcc- uu-g--ac-c 3061 ---------- ---------- ---------- --(ucc---- -)-------- ---------- 3121 ---------- ---------- -ggu----ga ua-gg----- acg-agaa|g uaggcuaaac 3181 cuuACCAUCU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A------ --------|| ||| // LOCUS (4)-Chryso 3273 bp RNA RNA 13-JAN-1999 DEFINITION Chrysophyceae. ACCESSION No information KEYWORDS No information. SOURCE Chrysophyceae. ORGANISM Chrysophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Chr.chromo 3273 bp RNA RNA 24-JAN-191 DEFINITION Chromulina chromophila. ACCESSION No information KEYWORDS No information. SOURCE Chromulina chromophila. ORGANISM Chromulina chromophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87332 LOCUS CMIRRNAA 1783 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Chromulina chromophila 16S-like ribosomal RNA, complete. ACCESSION M87332 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Chromulina chromophila (sub_species Stein) rRNA. ORGANISM Chromulina chromophila Eukaryota; Fungi; Chromophycota; Chrysophyceae. REFERENCE 1 (bases 1 to 1783) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1756 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 488 a 343 c 455 g 497 t ORIGIN BASE COUNT 488 a 343 c 455 g 497 t 1490 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAG-CA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgu-- -u-------- 121 ---au-a-ca guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaugg<-- --uccu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UCAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GA-GCCU(-c uaa)AGGUUU -G-GC-ACUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UUGGUGG-A- cguu--(--- 1921 uguaac---- -------)-- -gac-uccau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCA|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUU--- --|ggauc-a aug-c(uuu- ---------- 2401 ---------- ---------- -----)gcau u-gg-u-uu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ag-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCAAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ----(----- --)------- ---------- |---uccu-u 2821 gucc(--gaa a-)ggucc-g gguaaucuug uaaau]---- ---------- ------GUGU 2881 GUC-GUGAUU GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-GGG( UCAUCAG)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAA-CUUUCA GAc-cgaca- ug-a-aga-c 3061 a-cc------ ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ------g-gu -gac----uu ug-ua----- uug-ggaa|g uuauuuaaac 3181 cuaAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Hib.magna 3273 bp RNA RNA 24-JAN-191 DEFINITION Hibberdia magna. ACCESSION No information KEYWORDS No information. SOURCE Hibberdia magna. ORGANISM Hibberdia magna. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87331 LOCUS HIBRRNAA 1785 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Hibberdia magna 16S-like ribosomal RNA, complete. ACCESSION M87331 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Hibberdia magna (sub_species Anderson) rRNA. ORGANISM Hibberdia magna Eukaryota; Fungi; Chromophycota; Chrysophyceae. REFERENCE 1 (bases 1 to 1785) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1758 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 480 a 341 c 467 g 497 t ORIGIN BASE COUNT 480 a 341 c 467 g 497 t 1488 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAG-CA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacagau cu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaugg<-- --uccu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUA(-u uu-)UAGUCU -G-GC-ACUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GAGA- UCGGUGG-A- ccuc--(--- 1921 guaau----- -------)-- -gag-uucau cggcaucuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUC--- --|acgug-a aug-c(uua- ---------- 2401 ---------- ---------- -----)gcau u-gu-c-gu| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gg-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ----(----- --)------- ---------- |---uccu-u 2821 gucc(--gaa a-)ggucc-g gggaaucuug --aau]---- ---------- ------GUGU 2881 GUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-GGG( UCAUCAG)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCGGUG AAA-CUUUCG GAc-uguga- ca-g-gga-c 3061 g-cc------ ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- ------g-gc -gau----cu ug-uu----- gug-ggaa|g uuauuuaaac 3181 cucAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Och.danica 3273 bp RNA RNA 24-JAN-191 DEFINITION Ochromonas danica. ACCESSION No information KEYWORDS No information. SOURCE Ochromonas danica. ORGANISM Ochromonas danica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M32704 LOCUS OCHAB 1789 bp ds-DNA PLN 15-JUN-1990 DEFINITION O.danica small subunit rRNA gene. ACCESSION M32704 J02950 KEYWORDS ribosomal RNA small subunit. SOURCE O.danica DNA. ORGANISM Ochromonas danica Eukaryota; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales. REFERENCE 1 (bases 1 to 1789) AUTHORS Gunderson,J.H., Elwood,H., Ingold,A., Kindle,K. and Sogin,M.L. TITLE Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84, 5823-5827 (1987) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1789 /note="small subunit ribosomal RNA" BASE COUNT 479 a 341 c 464 g 505 t ORIGIN BASE COUNT 479 a 341 c 464 g 505 t 1484 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UUCU|GCCAG UAG-CA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcaa-u cu-------- 121 ---ua-u-ac guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuucu uugaugg<-- --uccu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGUCAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UU GG-GCC-(-u ucg)-GGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UUGGUGG-A- cguu--(--- 1921 guaauu---- -------)-- -gac-uccau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ----(----- )[CCUGCUAA CU-AGUC--- --|gucug-a aug-c(cuag ---------- 2401 ---------- ---------- -----)gcau u-ga-g-au| cc-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCAAAGGA AGUUAGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACACAU---- ---------- ----(----) [gc-agcgag 2761 -uuc------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 gucc(--gaa a-)ggucu-g gguaaucuug ucaau]---- ---------- ------GUGU 2881 GUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-GGG( UCAUCAG)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAA-CUUUCG GAc-cgugg- uu-c-uug-c 3061 c-ac------ ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- ------g-ug -gug----ag aa-uc----- gug-gaaa|g uuauuuaaac 3181 cucAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUA~~~~ ~~~~~~~~|| ||| // LOCUS Par.vestit 3273 bp RNA RNA 24-JAN-191 DEFINITION Paraphysomonas vestita. ACCESSION No information KEYWORDS No information. SOURCE Paraphysomonas vestita. ORGANISM Paraphysomonas vestita. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: Z28335 LOCUS PV18SRRNA 1745 bp DNA PLN 01-NOV-1994 DEFINITION P.vestita (SOTON 1) gene for 18S ribosomal RNA. ACCESSION Z28335 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Paraphysomonas vestita. ORGANISM Paraphysomonas vestita Eukaryota; Plantae; Thallobionta; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales; Paraphysomonadaceae. REFERENCE 1 (bases 1 to 1745) AUTHORS Rice,J. JOURNAL Thesis (1993) Biology, Southampton University STANDARD full automatic REFERENCE 2 (bases 1 to 1745) AUTHORS Rice,J. TITLE Direct Submission JOURNAL Submitted (05-NOV-1993) to the EMBL/GenBank/DDBJ databases. Rice J., Southampton University, Biology, Bassett Crescent East, Southampton, Hampshire, England, SO9 3TU STANDARD full automatic COMMENT NCBI gi: 563613 FEATURES Location/Qualifiers source 1..1745 /organism="Paraphysomonas vestita" /strain="SOTON 1" /clone="(Sequence deduced from rRNA gene frags. amplified by PCR)" rRNA 1..1745 /partial /gene="18S ribosomal RNA" misc_feature 31..63 /note="variable loop 1" misc_feature 106..266 /note="variable loop 2" misc_feature 454..514 /note="variable loop 3" misc_feature 616..848 /note="variable loop 4" misc_feature 1032..1070 /note="variable loop 5" misc_feature 1327..1383 /note="variable loop 7" misc_feature 1468..1537 /note="variable loop 8" misc_feature 1648..1745 /note="variable loop 9" BASE COUNT 502 a 293 c 403 g 547 t ORIGIN BASE COUNT 502 a 293 c 403 g 547 t 1528 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~A-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaaau cu-------- 121 --au--a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaugg<-- --uuuu-ug- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ---------- ---------- ---------- ---------- 301 ---gcaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACAAUG-CU GG-GCUU(-U UUA)AAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCAAC |UA|-GGGA- UUGGUGA-U- uguu--(--- 1921 uguuau---- -------)-- -gac-aucau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUU--- --|auaag-a aug-u(uuuu ---------- 2401 ---------- ---------- -----)ucau u-cu-u-uu| cau------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU---- ---------- ----gacua- 2641 )AUCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CAAUG AUACAC---- ---------- ----(----) [ac-aacgag 2761 -uuguuu--- -|-------- ---------- ---------- ---------- |uucaccu-u 2821 gucc(--gaa a-)gguccug gguaaucuug uaaau]---- ---------- ------GUGU 2881 AUC-GUGUUA GGGAUAGAUU UU(UGCAAUU C)UGAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-AAG( UCAUCAG)CU UGUGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAA-AUUUCG GAc-uguga- ua-u-uua-u 3061 a-cu------ ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- ------g-gu -auu----uu ua-uc----- gua-gaaa|g uuauuuaaac 3181 cucAUCAUUU AG~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mal.papill 3273 bp RNA RNA 24-JAN-191 DEFINITION Mallomonas papillosa. ACCESSION No information KEYWORDS No information. SOURCE Mallomonas papillosa. ORGANISM Mallomonas papillosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M55285 LOCUS MALRR16S 1790 bp ss-rRNA PLN 05-FEB-1991 DEFINITION Mallomonas papillosa 16S ribosomal (small subunit) RNA. ACCESSION M55285 KEYWORDS 16S ribosomal RNA; protist. SOURCE Mallomonas papillosa (strain CCMP A3807) ribosomal RNA. ORGANISM Mallomonas papillosa Eukaryota; Plantae; Thallobionta; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales; Synuraceae. REFERENCE 1 (sites) AUTHORS Ariztia,E.V., Andersen,R.A. and Sogin,M.L. TITLE A new phylogeny for chromophyte algae using 16S-like rRNA sequences from Mallomonas papillosa (Synurophyceae) and Tribonema aequale (Xanthophyceae) JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 1 to 1790) AUTHORS Bacher,N., Zisman,Y., Berent,E. and Livneh,E. TITLE Isolation and characterization of PKC-L, a new member of the protein kinase C-related gene family specifically expressed in lung, skin, and heart JOURNAL Mol. Cell. Biol. 11, 126-133 (1991) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1790 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 476 a 348 c 462 g 504 t ORIGIN BASE COUNT 476 a 348 c 462 g 504 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAG-CA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacga-u uu-------- 121 ---uu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaugg<-- --uucu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCGAUG-CC GG-GCUU(-u uuu)AAGUUU -G-GC-ACUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|A-UAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UUGGUGG-G- cguu--(--- 1921 cguaau---- -------)-- -gac-uccau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUC--- --|uuauc-a aug-c(uua- ---------- 2401 ---------- ---------- -----)gcau u-ga-u-gu| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACACAC---- ---------- ----(----) [gc-aacgag 2761 -uac------ -|-------- ----(----- --)------- ---------- |--uuccu-u 2821 ggcc(--gaa a-)ggucc-g gguaaucuug uaaau]---- ---------- ------GUGU 2881 GUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-GAG( UCAUCAG)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAA-AUUCCG GAc-ugugg- cu-c-gga-c 3061 g-cc------ ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ------g-gc -gac----uu ug-uc----- gua-ggaa|g uuauuuaaac 3181 cucAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AG~~~~~ ~~~~~~~~|| ||| // LOCUS Mal.striat 3273 bp RNA RNA 24-JAN-191 DEFINITION Mallomonas striata. ACCESSION No information KEYWORDS No information. SOURCE Mallomonas striata. ORGANISM Mallomonas striata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87333 LOCUS MALRRNAA 1784 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Synura spinosa 16S-like ribosomal RNA, complete. ACCESSION M87333 M87335 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Mallomonas striata (sub_species Asmund) rRNA. ORGANISM Mallomonas striata Eukaryota; Fungi; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales; Synuraceae. REFERENCE 1 (bases 1 to 1784) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1757 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 482 a 341 c 453 g 507 t 1 others ORIGIN BASE COUNT 482 a 341 c 453 g 507 t 1490 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAG-CA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcuauu ua-------- 121 ---ua-c-ga guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaugg<-- --uacu-ua- c-u>AUAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uuu)AAGUUU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|A-UAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UUGGUGG-A- cguu--(--- 1921 uguuac---- -------)-- -gac-uccau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G G--------| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAUAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUC--- --|auauu-a aug-u(agu- ---------- 2401 ---------- ---------- -----)acau u-ga-u-cu| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gg-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CURUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ----(----- --)------- ---------- |---uccu-u 2821 gucc(--gaa a-)ggucc-g gguaaucuug uaaau]---- ---------- ------GUGU 2881 GUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGC-GAG( UCAUCAG)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAA-AUUCCG GAc-ugugg- cu-c-gaa-c 3061 g-cc------ ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- ------g-gc -gau----cu ug-cu----- gua-gaaa|g uuauuuaaac 3181 cucAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Syn.spinos 3273 bp RNA RNA 24-JAN-191 DEFINITION Synura spinosa. ACCESSION No information KEYWORDS No information. SOURCE Synura spinosa. ORGANISM Synura spinosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87336 LOCUS SYURRNAA 1792 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Synura spinosa 16S-like ribosomal RNA, complete. ACCESSION M87336 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Synura spinosa (sub_species Korsh) rRNA. ORGANISM Synura spinosa Eukaryota; Fungi; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales; Synuraceae. REFERENCE 1 (bases 1 to 1792) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1765 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 474 a 350 c 465 g 498 t 5 others ORIGIN BASE COUNT 474 a 350 c 465 g 498 t 1486 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAG-CA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgacu uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugaugg<-- --uucu-uc- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gcaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-u uuu)AAGUUU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|A-UAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UUGGUGG-A- cgyu--(--- 1921 uguuac---- -------)-- -gac-uccau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGRGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUC--- --|uugcg-a aug-c(cua- ---------- 2401 ---------- ---------- -----)gcau u-cg-u-gu| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gg-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACACAC---- ---------- ----(----) [gc-accgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |---uccu-u 2821 gucc(--gaa a-)ggucc-g gguaaucuua uaaau]---- ---------- ------gugu 2881 guc-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AAUGU-GAG( UCAUCAG)CU CGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAA-AUUUUG GAc-ugugg- cu-a-aga-c 3061 g-cc------ ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ------g-gc -gac----uu ug-cu----- gug-ggaa|g ucauuuaaac 3181 cucAUCAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCRUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Dictyo 3273 bp RNA RNA 13-JAN-1999 DEFINITION Dictyochophyceae. ACCESSION No information KEYWORDS No information. SOURCE Dictyochophyceae. ORGANISM Dictyochophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Dic.specul 3273 bp RNA RNA 24-JAN-191 DEFINITION Dictyocha speculum. ACCESSION No information KEYWORDS No information. SOURCE Dictyocha speculum. ORGANISM Dictyocha speculum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U14385 LOCUS DSU14385 1818 bp DNA PLN 07-DEC-1994 DEFINITION Dictyocha speculum 18S small-subunit rRNA gene. ACCESSION U14385 KEYWORDS . SOURCE Dictyocha speculum. ORGANISM Dictyocha speculum Eukaryotae; Hyperchondria; Eukaryote crown group; Stramenopiles; Dictyochales; Dictyocha. REFERENCE 1 (bases 1 to 1818) AUTHORS Saunders,G.W., Potter,D., Paskind,M.P. and Andersen,R.A. TITLE Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1818) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (05-SEP-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595803 FEATURES Location/Qualifiers source 1..1818 /organism="Dictyocha speculum" /isolate="CCMP1381" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1818 /product="18S small-subunit rRNA" primer_bind complement(1792..1818) /note="PCR 3' end primer" BASE COUNT 478 a 364 c 489 g 487 t ORIGIN BASE COUNT 478 a 364 c 489 g 487 t 1455 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgac- --------uu 121 ua--u-a-cu guga-a]--- --------|- --ACU|-GCG UACAGCUCAU UAAACCAGUU 181 AU-AGUUUAU UUGAUAU<-- -uccuc-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---GGAUCAU UC-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aua)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-U UUU)AAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AG|CAGU-U- 1681 GGGGAUGUC| CGU-AUUCGA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UUG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUCA UCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAA- G(A-UUAG-A -UAC)C-UUC 1861 GUAGU|CUUA uACC-AUAAA CUAUGCCGAC |UA|-GGGA- UUGGCGG-U- cgcu--(--- 1921 uguuca---- -------)-- -ggc-uccgu cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCUUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUG--- --|acggg-a aug-c(---- -uuu------ 2401 ---------- ---------- -----)gcau u-gc-u-gg| auc------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ua-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gacua- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 UGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuu------ -|-------- ---------- ---------- ---------- |agaaccu-u 2821 ggcu(--gag a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUUGAUG AU(UGCAACU A)UUCA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGU-GAG( UCAUCAG)CU CACAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGCUCGGUG AGG-CCUCAG GAu-ucugg- uc-u-gac-a 3061 c-c------- ---------- ---------- --(cuaaca- -)-------- ---------- 3121 ---------- --------gg -agu----cu ga-ug----- aga-agaa|u cuguccaaac 3181 cucgucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUA- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Ape.radian 3273 bp RNA RNA 24-JAN-191 DEFINITION Apedinella radians. ACCESSION No information KEYWORDS No information. SOURCE Apedinella radians. ORGANISM Apedinella radians. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U14384 LOCUS ARU14384 1808 bp DNA PLN 07-DEC-1994 DEFINITION Apedinella radians 18S small-subunit rRNA gene. ACCESSION U14384 KEYWORDS . SOURCE Apedinella radians. ORGANISM Apedinella radians Eukaryotae; Hyperchondria; Eukaryote crown group; Stramenopiles; Pedinellates; Apedinella. REFERENCE 1 (bases 1 to 1808) AUTHORS Saunders,G.W., Potter,D., Paskind,M.P. and Andersen,R.A. TITLE Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1808) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (05-SEP-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, 3052, Australia STANDARD full automatic COMMENT NCBI gi: 595802 FEATURES Location/Qualifiers source 1..1808 /organism="Apedinella radians" /isolate="MUCC204" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1808 /product="18S small-subunit rRNA" primer_bind complement(1782..1808) /note="PCR 3' end primer" BASE COUNT 473 a 360 c 474 g 501 t ORIGIN BASE COUNT 473 a 360 c 474 g 501 t 1465 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgaau ---------c 121 ua--u-a-cu guga-a]--- --------|- --ACU|-GCG UACGGCUCAU UAAACcaguu 181 au-aguuuau uugauau<-- -ucccc-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACUUAG-UC GG-GCCG(-u uuu)CGGUCU -G-AC-UUUA GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AG|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UAG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAA- G(A-UUAG-A -UAC)C-UUC 1861 GUAGU|CCUA -ACC-AUAAA CGAUGCCGAC |UC|-GGGA- UUGGCGG-U- cgau--(--- 1921 ucuuuuauc- -------)-- -guc-uccgu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUU AUU)CCGUUA ACGAACGAGA CCCCUG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCG--- --|ccggg-a aug-c(---- -uuc------ 2401 ---------- ---------- -----)gcau u-gc-c-gg| au-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UAU-GG(--- ---------- ----gacua- 2641 )CCAUACGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGU---- ---------- ----(----) [gc-aacaag 2761 -uuu------ -|-------- ---------- ---------- ---------- |agaaccu-u 2821 ggcc(--gag a-)ggccu-g gguaaucuu- ugaac]---- ---------- ------GCGU 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUCGAA GGUAAUGAUG AGC-CGUCAG GAc-cgucg- gu-u-ugg-c 3061 c-u------- ---------- ---------- --(uaac--- -)-------- ---------- 3121 ---------- --------gg -guc----uu uu-cg----- acu-gaaa|u uucugcaaau 3181 ccuuaccUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUA- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Cil.infusi 3273 bp RNA RNA 24-JAN-191 DEFINITION Ciliophrys infusionum. ACCESSION No information KEYWORDS No information. SOURCE Ciliophrys infusionum. ORGANISM Ciliophrys infusionum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L37205 LOCUS YPCRRO 1863 bp ss-rRNA RNA 01-FEB-1995 DEFINITION Ciliophrys infusionum ribosomal RNA (rRNA). ACCESSION L37205 KEYWORDS ribosomal RNA. SOURCE Ciliophrys infusionum rRNA. ORGANISM Ciliophrys infusionum Eukaryota; Protista; Pedinellales. REFERENCE 1 (bases 1 to 1863) AUTHORS Cavalier-Smith,T., Chao,E.E. and Allsopp,M.T.E.P. TITLE Pedinellids are related to Pelagomonas: rRNA evidence for chloroplast loss within Heterokonta JOURNAL Unpublished (1995) STANDARD full automatic COMMENT Author supplied classification: Pedinellea, Heterokonta, Chromista. NCBI gi: 642675 FEATURES Location/Qualifiers source 1..1863 /organism="Ciliophrys infusionum" /sequenced_mol="rRNA" rRNA 1..1863 BASE COUNT 482 a 376 c 504 g 501 t ORIGIN BASE COUNT 482 a 376 c 504 g 501 t 1410 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---------[ auaagcaau- ---------- 121 --uau-a-ca gcga-a]--- --------|- --ACU|-GCG UACGGCUCAU UAAACcaguu 181 au-uguuucu uugauag<-- -uuccc-ua- c-u>ACUCGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- ---------- ---------- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUACG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGCGCGC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACGUAG-UC GG-GCCC(au uuu)GGGUCU -G-AC-UUUC GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UU-AAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AG|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UAG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAU|G-GAC GCGUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAA- G(A-UUAG-A -UAC)C-UUC 1861 GUAGU|CCUA -ACC-AUAAA CGAUGCCGAC |UC|-GGGA- UUGGCGG-U- cguu--(gga 1921 auucacaaga uucaaaa)-- -gac-uccgu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCG--- --|cacug-a aug-c(---- -cua------ 2401 ---------- ---------- -----)gcau u-ga-g-ug| auuuu----- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UCG-GU(--- ---------- ----gacua- 2641 )AUCGACGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuucacu a|-------- ---------- ---------- ---------- |gugaccu-u 2821 ggcc(--gga a-)ggcuu-g ggaaaucu-g ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUUGAUU UU(UGCAAUU C)UGAA-UCA UAAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCU-|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUCGAA GGUAAUGAUG AGC-CCUUAG GAu-uguca- uu-c-uug-a 3061 c-ac------ ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- ------g-ug -uug----gg ag-ag----- gcg-agaa|u uugugcaaau 3181 cccuaccUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUA- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pse.elasti 3273 bp RNA RNA 24-JAN-191 DEFINITION Pseudopedinella elastica. ACCESSION No information KEYWORDS No information. SOURCE Pseudopedinella elastica. ORGANISM Pseudopedinella elastica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U14387 LOCUS PEU14387 1810 bp DNA PLN 07-DEC-1994 DEFINITION Pseudopedinella elastica 18S small-subunit rRNA gene. ACCESSION U14387 KEYWORDS . SOURCE Pseudopedinella elastica. ORGANISM Pseudopedinella elastica Eukaryotae; Hyperchondria; Eukaryote crown group; Stramenopiles; Pedinellates; Pseudopedinella. REFERENCE 1 (bases 1 to 1810) AUTHORS Saunders,G.W., Potter,D., Paskind,M.P. and Andersen,R.A. TITLE Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1810) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (05-SEP-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, 3052, Australia STANDARD full automatic COMMENT NCBI gi: 595805 FEATURES Location/Qualifiers source 1..1810 /organism="Pseudopedinella elastica" /isolate="CCMP716" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1810 /product="18S small-subunit rRNA" primer_bind complement(1784..1810) /note="PCR 3' end primer" BASE COUNT 468 a 365 c 480 g 497 t ORIGIN BASE COUNT 468 a 365 c 480 g 497 t 1463 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgac- ---------- 121 ucuau-a-cu guga-a]--- --------|- --ACU|-GCG UACGGCUCAU UAAACcaguu 181 au-aguuuau uugauau<-- -ucccc-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACUUAG-UC GG-GCCG(-u uuu)CGGUCU -G-AC-UUUA GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AG|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UAG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAA- G(A-UUAG-A -UAC)C-UUC 1861 GUAGU|CCUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UUGGCGG-U- cguu--(--u 1921 uuuuacc--- -------)-- -gac-uccgu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUG--- --|cuggg-a aug-c(---- -uuc------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| au-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU CGU-GU(--- ---------- ----gacua- 2641 )ACACGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuu------ -|-------- ---------- ---------- ---------- |acaaccu-u 2821 ggcc(--ggg a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAACAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUCGAA GGUAAUGAUG AGC-CCUCAG GAc-agucg- au-u-ggc-g 3061 c-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gg -uac----cu uu-ug----- guu-gaaa|u uugugcaaau 3181 ccuuaccUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUA- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Pte.danica 3273 bp RNA RNA 24-JAN-191 DEFINITION Pteridomonas danica. ACCESSION No information KEYWORDS No information. SOURCE Pteridomonas danica. ORGANISM Pteridomonas danica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L37204 LOCUS TPERRO 1809 bp ss-rRNA RNA 01-FEB-1995 DEFINITION Pteridomonas danica ribosomal RNA (rRNA). ACCESSION L37204 KEYWORDS ribosomal RNA. SOURCE Pteridomonas danica (strain CCAP 1969/1) rRNA. ORGANISM Pteridomonas danica Eukaryota; Protista; Pedinellales. REFERENCE 1 (bases 1 to 1809) AUTHORS Cavalier-Smith,T., Chao,E.E. and Allsopp,M.T.E.P. TITLE Pedinellids are related to Pelagomonas: rRNA evidence for chloroplast loss within Heterokonta JOURNAL Unpublished (1995) STANDARD full automatic COMMENT Author supplied classification: Pedinellea, Heterokonta, Chromista. NCBI gi: 642668 FEATURES Location/Qualifiers source 1..1809 /organism="Pteridomonas danica" /strain="CCAP 1969/1" /sequenced_mol="rRNA" rRNA 1..1809 BASE COUNT 478 a 358 c 470 g 502 t 1 others ORIGIN BASE COUNT 478 a 358 c 470 g 502 t 1465 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---------[ auaaacgaa- ---------- 121 ucuau-a-cu guga-a]--- --------|- --ACU|-GCG UACGGCUCAU UAAACcaguu 181 au-aguuuau uugauau<-- -ucccc-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCCUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-K(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACU)CAGGG- 781 A-GGU|A|-G UGACAAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- ---------- ---------- ---------- ---------< 901 AACUUAG-UC GA-GCCG(-u uuu)CGGUUU -G-AC-UUUA GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AG|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UAG-AAG- A-CGA-A-GU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAA- G(A-UUAG-A -UAC)C-UUC 1861 GUAGU|CCUA -ACC-AUAAA CCAUGCCGAC |UC|-GGGA- UUGGCGG-U- cguu--(--- 1921 acuuuuuauc -------)-- -gac-uccgu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUG--- --|ccauu-a aug-c(---- -uuc------ 2401 ---------- ---------- -----)gcau u-gg-u-gg| au-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UAU-GA(--- ---------- ----gacua- 2641 )UCAUACGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGU---- ---------- ----(----) [gc-aacaag 2761 -uaua----- -|-------- ---------- ---------- ---------- |agaaccu-u 2821 ggcc(--ggg a-)ggccu-g gguaaucuu- ugaac]---- ---------- ------GCGU 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUCGAA GGUAAUGAUG AGC-CCGCAG GAc-cgcug- au-u-uag-c 3061 c-u------- ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- --------gg -gcu----uu uu-cg----- guu-gaaa|u uucugcaaau 3181 ccuugccUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUA- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Rhi.marina 3273 bp RNA RNA 24-JAN-191 DEFINITION Rhizochromulina cf. marina. ACCESSION No information KEYWORDS No information. SOURCE Rhizochromulina cf. marina. ORGANISM Rhizochromulina cf. marina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U14388 LOCUS RMU14388 1839 bp DNA PLN 07-DEC-1994 DEFINITION Rhizochromulina cf marina 18S small-subunit rRNA gene. ACCESSION U14388 KEYWORDS . SOURCE Rhizochromulina cf marina. ORGANISM Rhizochromulina cf marina Eukaryotae; Hyperchondria; Eukaryote crown group; Stramenopiles; Chrysophyta; Rhizochromulina. REFERENCE 1 (bases 1 to 1839) AUTHORS Saunders,G.W., Potter,D., Paskind,M.P. and Andersen,R.A. TITLE Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1839) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (05-SEP-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595806 FEATURES Location/Qualifiers source 1..1839 /organism="Rhizochromulina cf marina" /isolate="CCMP237" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1839 /product="18S small-subunit rRNA" primer_bind complement(1813..1839) /note="PCR 3' end primer" BASE COUNT 471 a 376 c 497 g 495 t ORIGIN BASE COUNT 471 a 376 c 497 g 495 t 1434 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgauu ---------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG UACGGCUCAU UAAACcaguu 181 au-aguuuau uugauau<-- -uuccc-ua- c-u>ACUCGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUACG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACUUAG-UC GG-GCCU(-u uac)GGGUCU -G-AC-UUUA GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AG|CAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UAG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAA- G(A-UUAG-A -UAC)C-UUC 1861 GUAGU|CCUA -ACC-AUAAA CGAUGCCGAC |UC|-GGGA- UUGGCGG-U- cguug-(gaa 1921 ugcaaauuca a-----a)-- ugac-uccgu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCG--- --|caggg-a aug-c(---- -auc------ 2401 ---------- ---------- -----)gcau u-gc-c-ug| guu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cg-cuUC 2581 UUAGAGG]-- -|-------- -----GACUG UCA-GU(--- ---------- ----gacua- 2641 )ACUGACGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuu--- -|-------- ---------- ---------- ---------- |uuuuccu-u 2821 ggcu(--gga a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUCGAA GGUAAUGAUG AGC-CCUUAG GAu-ugugg- cu-u-ggg-a 3061 c-gg------ ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- ------c-cg -acc----cu cg-cc----- gcg-agaa|u uugugcaaau 3181 cccuaccUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUA- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Eustig 3273 bp RNA RNA 13-JAN-1999 DEFINITION Eustigmatophyceae. ACCESSION No information KEYWORDS No information. SOURCE Eustigmatophyceae. ORGANISM Eustigmatophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Eust.magna 3273 bp RNA RNA 24-JAN-191 DEFINITION Eustigmatos magna. ACCESSION No information KEYWORDS No information. SOURCE Eustigmatos magna. ORGANISM Eustigmatos magna. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U41051 LOCUS EMU41051 1796 bp DNA PLN 02-MAR-1998 DEFINITION Eustigmatos magna 18S ribosomal RNA gene, complete sequence. ACCESSION U41051 VERSION U41051.1 GI:2921621 KEYWORDS . SOURCE Eustigmatos magna. ORGANISM Eustigmatos magna Eukaryota; stramenopiles; Eustigmatophyceae; Eustigmatos. REFERENCE 1 (bases 1 to 1796) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rRNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1796) AUTHORS Brett,R.W., Potter,D. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1796 /organism="Eustigmatos magna" /strain="CCMP 387" /db_xref="taxon:44428" rRNA 1..1796 /product="18S ribosomal RNA" BASE COUNT 458 a 369 c 494 g 475 t BASE COUNT 458 a 369 c 494 g 475 t 1477 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagggu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-UGUUUAU UUGAUAG<-- -u-guu--c- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(gu uaa)-GCUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-U- ugcu--(--- 1921 aucucaa--- -------)-- -ggc-uccau cggcaccua- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA CU-AGUA--- --|ccgga-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-gg| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gguua- 2641 )GCCGAAGGA AGAUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--ggc a-)ggacu-g gguaaucuu- gaaac]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU CU(UGCAACU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUUCGGUG AAG-CUUUCG GAc-cgcgc- cg-u-ugg-c 3061 ---------- ---------- ---------- --(uucua-- -)-------- ---------- 3121 ---------- ---------- -gcc----gg ca-gu----- gcg-ggaa|g uuaucuaaac 3181 cucaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mon.subter 3273 bp RNA RNA 24-JAN-191 DEFINITION Monodopsis subterranea. ACCESSION No information KEYWORDS No information. SOURCE Monodopsis subterranea. ORGANISM Monodopsis subterranea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U41054 LOCUS MSU41054 1793 bp DNA PLN 02-MAR-1998 DEFINITION Monodopsis subterranea 18S ribosomal RNA gene, complete sequence. ACCESSION U41054 VERSION U41054.1 GI:2921622 KEYWORDS . SOURCE Monodopsis subterranea. ORGANISM Monodopsis subterranea Eukaryota; stramenopiles; Eustigmatophyceae; Monodopsis. REFERENCE 1 (bases 1 to 1793) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rRNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1793) AUTHORS Brett,R.W., Potter,D. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1793 /organism="Monodopsis subterranea" /strain="UTEX 151" /db_xref="taxon:44434" rRNA 1..1793 /product="18S ribosomal RNA" BASE COUNT 471 a 360 c 483 g 478 t 1 others BASE COUNT 471 a 360 c 483 g 478 t 1481 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -ucccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- cua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- cgca--(--- 1921 -uuuuaa--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 guuc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAc-cgugc- ca-c-uag-c 3061 ---------- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- ---------- -gcu----gg cg-gc----- gug-ggaa|g uuaucvaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Na.CCMP505 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis CCMP505. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis CCMP505. ORGANISM Nannochloropsis CCMP505. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U41050 LOCUS NCU41050 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis CCMP505 18S ribosomal RNA gene, complete sequence. ACCESSION U41050 VERSION U41050.1 GI:2921623 KEYWORDS . SOURCE Nannochloropsis CCMP505. ORGANISM Nannochloropsis CCMP505 Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rRNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Brett,R.W., Potter,D. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis CCMP505" /strain="CCMP 505" /db_xref="taxon:44426" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 472 a 358 c 479 g 483 t BASE COUNT 472 a 358 c 479 g 483 t 1481 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUU-GGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- guaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Na.CCMP531 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis CCMP531. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis CCMP531. ORGANISM Nannochloropsis CCMP531. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U41094 LOCUS NCU41094 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis CCMP531 18S ribosomal RNA gene, complete sequence. ACCESSION U41094 VERSION U41094.1 GI:2921620 KEYWORDS . SOURCE Nannochloropsis CCMP531. ORGANISM Nannochloropsis CCMP531 Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rRNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Brett,R.W., Potter,D. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) Daniel Potter, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis CCMP531" /strain="CCMP 531" /db_xref="taxon:44425" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 473 a 355 c 480 g 482 t 2 others BASE COUNT 473 a 355 c 480 g 482 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)SS|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuguaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gadi.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis gaditana. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045036 LOCUS AF045036 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis gaditana CCAP849/5 18S ribosomal RNA gene, complete sequence. ACCESSION AF045036 VERSION AF045036.1 GI:2921784 KEYWORDS . SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis gaditana" /strain="CCAP849/5" /db_xref="taxon:72520" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 475 a 357 c 478 g 480 t BASE COUNT 475 a 357 c 478 g 480 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuua--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gadi.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis gaditana. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045037 LOCUS AF045037 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis gaditana CCMP526 18S ribosomal RNA gene, complete sequence. ACCESSION AF045037 VERSION AF045037.1 GI:2921785 KEYWORDS . SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis gaditana" /strain="CCMP526" /db_xref="taxon:72520" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 475 a 357 c 478 g 480 t BASE COUNT 475 a 357 c 478 g 480 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuua--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gadi.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis gaditana. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045038 LOCUS AF045038 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis gaditana CCMP527 18S ribosomal RNA gene, complete sequence. ACCESSION AF045038 VERSION AF045038.1 GI:2921786 KEYWORDS . SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis gaditana" /strain="CCMP527" /db_xref="taxon:72520" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 475 a 357 c 478 g 480 t BASE COUNT 475 a 357 c 478 g 480 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuua--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gadi.4 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis gaditana. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045039 LOCUS AF045039 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis gaditana CCMP532 18S ribosomal RNA gene, complete sequence. ACCESSION AF045039 VERSION AF045039.1 GI:2921787 KEYWORDS . SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis gaditana" /strain="CCMP532" /db_xref="taxon:72520" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 475 a 357 c 478 g 480 t BASE COUNT 475 a 357 c 478 g 480 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuua--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gadi.5 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis gaditana. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045040 LOCUS AF045040 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis gaditana CCMP536 18S ribosomal RNA gene, complete sequence. ACCESSION AF045040 VERSION AF045040.1 GI:2921788 KEYWORDS . SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis gaditana" /strain="CCMP536" /db_xref="taxon:72520" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 475 a 357 c 478 g 480 t BASE COUNT 475 a 357 c 478 g 480 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuua--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gadi.6 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis gaditana. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF067957 LOCUS AF067957 1797 bp DNA PLN 01-FEB-1999 DEFINITION Nannochloropsis gaditana 18S ribosomal RNA gene, complete sequence. ACCESSION AF067957 VERSION AF067957.1 GI:4206068 KEYWORDS . SOURCE Nannochloropsis gaditana. ORGANISM Nannochloropsis gaditana Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1797) AUTHORS Sukenik,A., Douek,J. and Livne,A. TITLE Molecular characterization of members of the Nannochloropsis genus (monodopsidacea, eustigmatophyceae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1797) AUTHORS Sukenik,A. and Livne,A. TITLE Direct Submission JOURNAL Submitted (24-MAY-1998) Marine Biology, IOLR, P.O. Box 8030, Haifa 31080, Israel FEATURES Location/Qualifiers source 1..1797 /organism="Nannochloropsis gaditana" /strain="#B-3 (Instiotuto de ciencias marinas de Andalucia); CCAP 849/5; CCMP1775" /db_xref="taxon:72520" /note="isolated by L.M. Lubian country: Spain: Cadiz Bay" rRNA 1..1797 /product="18S ribosomal RNA" BASE COUNT 477 a 361 c 479 g 480 t BASE COUNT 477 a 361 c 479 g 480 t 1476 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU CUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuua--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gran.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis granulata. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045041 LOCUS AF045041 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis granulata CCMP1662 18S ribosomal RNA gene, complete sequence. ACCESSION AF045041 VERSION AF045041.1 GI:2921789 KEYWORDS . SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis granulata" /strain="CCMP1662" /db_xref="taxon:43926" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 473 a 359 c 481 g 479 t BASE COUNT 473 a 359 c 481 g 479 t 1481 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gran.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis granulata. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045042 LOCUS AF045042 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis granulata CCMP534 18S ribosomal RNA gene, complete sequence. ACCESSION AF045042 VERSION AF045042.1 GI:2921790 KEYWORDS . SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis granulata" /strain="CCMP534" /db_xref="taxon:43926" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 473 a 359 c 481 g 479 t BASE COUNT 473 a 359 c 481 g 479 t 1481 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gran.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis granulata. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045043 LOCUS AF045043 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis granulata CCMP535 18S ribosomal RNA gene, complete sequence. ACCESSION AF045043 VERSION AF045043.1 GI:2921791 KEYWORDS . SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis granulata" /strain="CCMP535" /db_xref="taxon:43926" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 473 a 359 c 481 g 479 t BASE COUNT 473 a 359 c 481 g 479 t 1481 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.gran.4 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis granulata. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U41092 LOCUS NCU41092 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis CCMP529 18S ribosomal RNA gene, complete sequence. ACCESSION U41092 VERSION U41092.1 GI:2921618 KEYWORDS . SOURCE Nannochloropsis granulata. ORGANISM Nannochloropsis granulata Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rRNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Brett,R.W., Potter,D. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) Daniel Potter, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis granulata" /strain="CCMP 529" /db_xref="taxon:43926" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 473 a 359 c 481 g 479 t BASE COUNT 473 a 359 c 481 g 479 t 1481 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.limnet 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis limnetica. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis limnetica. ORGANISM Nannochloropsis limnetica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF251496 LOCUS AF251496 1783 bp DNA PLN 17-APR-2000 DEFINITION Nannochloropsis limnetica 18S ribosomal RNA gene, partial sequence. ACCESSION AF251496 VERSION AF251496.1 GI:7579067 KEYWORDS . SOURCE Nannochloropsis limnetica. ORGANISM Nannochloropsis limnetica Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1783) AUTHORS Krienitz,L., Hepperle,D., Stich,H.-B. and Weiler,W. TITLE Nannochloropsis limnetica sp. nov. (Eustigmatophyceae), a new picoplanktont from small freshwater bodies JOURNAL Phycologia (2000) In press REFERENCE 2 (bases 1 to 1783) AUTHORS Hepperle,D. TITLE Direct Submission JOURNAL Submitted (03-APR-2000) Dept. Stratified Lakes, Inst. of Freshwater Ecology & Inland Fisheries, Alte Fischerhuette 2, Stechlin 16775, Germany FEATURES Location/Qualifiers source 1..1783 /organism="Nannochloropsis limnetica" /strain="SAG 18.99" /db_xref="taxon:120807" rRNA <1..>1783 /product="18S ribosomal RNA" BASE COUNT 470 a 355 c 477 g 481 t BASE COUNT 470 a 355 c 477 g 481 t 1490 others ORIGIN 1 |~~~~~~~~~ ~~~~~(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- guaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAG~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.ocul.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis oculata. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis oculata. ORGANISM Nannochloropsis oculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045044 LOCUS AF045044 1791 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis oculata CCMP525 18S ribosomal RNA gene, complete sequence. ACCESSION AF045044 VERSION AF045044.1 GI:2921792 KEYWORDS . SOURCE Nannochloropsis oculata. ORGANISM Nannochloropsis oculata Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1791) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1791) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1791 /organism="Nannochloropsis oculata" /strain="CCMP525" /db_xref="taxon:43925" rRNA 1..1791 /product="18S ribosomal RNA" BASE COUNT 472 a 355 c 480 g 484 t BASE COUNT 472 a 355 c 480 g 484 t 1482 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.ocul.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis oculata. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis oculata. ORGANISM Nannochloropsis oculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045045 LOCUS AF045045 1791 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis oculata CCMP533 18S ribosomal RNA gene, complete sequence. ACCESSION AF045045 VERSION AF045045.1 GI:2921793 KEYWORDS . SOURCE Nannochloropsis oculata. ORGANISM Nannochloropsis oculata Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1791) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1791) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1791 /organism="Nannochloropsis oculata" /strain="CCMP533" /db_xref="taxon:43925" rRNA 1..1791 /product="18S ribosomal RNA" BASE COUNT 472 a 355 c 480 g 484 t BASE COUNT 472 a 355 c 480 g 484 t 1482 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.sali.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M87328 LOCUS NACRRNAA 1797 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Nannochloropsis salina 16S-like ribosomal RNA, complete. ACCESSION M87328 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Nannochloropsis salina rRNA. ORGANISM Nannochloropsis salina Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Phytomastigophora; Eustigmatida; Eustigmatophyceae. REFERENCE 1 (bases 1 to 1797) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1770 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 477 a 359 c 480 g 481 t ORIGIN BASE COUNT 477 a 359 c 480 g 481 t 1476 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuua--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Nan.sali.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045046 LOCUS AF045046 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis salina CCAP849/2 18S ribosomal RNA gene, complete sequence. ACCESSION AF045046 VERSION AF045046.1 GI:2921794 KEYWORDS . SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis salina" /strain="CCAP849/2" /db_xref="taxon:5749" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 476 a 357 c 478 g 479 t BASE COUNT 476 a 357 c 478 g 479 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.sali.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045047 LOCUS AF045047 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis salina CCAP849/3 18S ribosomal RNA gene, complete sequence. ACCESSION AF045047 VERSION AF045047.1 GI:2921795 KEYWORDS . SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis salina" /strain="CCAP849/3" /db_xref="taxon:5749" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 476 a 357 c 478 g 479 t BASE COUNT 476 a 357 c 478 g 479 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.sali.4 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045048 LOCUS AF045048 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis salina CCAP849/4 18S ribosomal RNA gene, complete sequence. ACCESSION AF045048 VERSION AF045048.1 GI:2921796 KEYWORDS . SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis salina" /strain="CCAP849/4" /db_xref="taxon:5749" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 476 a 357 c 478 g 479 t BASE COUNT 476 a 357 c 478 g 479 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.sali.5 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045049 LOCUS AF045049 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis salina CCMP537 18S ribosomal RNA gene, complete sequence. ACCESSION AF045049 VERSION AF045049.1 GI:2921797 KEYWORDS . SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis salina" /strain="CCMP537" /db_xref="taxon:5749" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 476 a 357 c 478 g 479 t BASE COUNT 476 a 357 c 478 g 479 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.sali.6 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045050 LOCUS AF045050 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis salina CCMP538 18S ribosomal RNA gene, complete sequence. ACCESSION AF045050 VERSION AF045050.1 GI:2921798 KEYWORDS . SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis salina" /strain="CCMP538" /db_xref="taxon:5749" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 476 a 357 c 478 g 479 t BASE COUNT 476 a 357 c 478 g 479 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nan.sali.7 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U41093 LOCUS NCU41093 1790 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis CCMP369 18S ribosomal RNA gene, complete sequence. ACCESSION U41093 VERSION U41093.1 GI:2921619 KEYWORDS . SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1790) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rRNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Brett,R.W., Potter,D. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) Daniel Potter, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1790 /organism="Nannochloropsis salina" /strain="CCMP 369" /db_xref="taxon:5749" rRNA 1..1790 /product="18S ribosomal RNA" BASE COUNT 476 a 357 c 478 g 479 t BASE COUNT 476 a 357 c 478 g 479 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-UAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuuuaa--- -------)-- -ggc-cucau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gu-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-uacgc- ca-u-cag-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -gcc----ga cg-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nanno.sp.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis sp. CCAP211/46. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis sp. CCAP211/46. ORGANISM Nannochloropsis sp. CCAP211/46. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045034 LOCUS AF045034 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis sp. CCAP211/46 18S ribosomal RNA gene, complete sequence. ACCESSION AF045034 VERSION AF045034.1 GI:2921782 KEYWORDS . SOURCE Nannochloropsis sp. CCAP211/46. ORGANISM Nannochloropsis sp. CCAP211/46 Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis sp. CCAP211/46" /strain="CCAP211/46" /db_xref="taxon:72522" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 473 a 355 c 480 g 482 t 2 others BASE COUNT 473 a 355 c 480 g 482 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)SS|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuguaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nanno.sp.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis sp. CCAP211/78. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis sp. CCAP211/78. ORGANISM Nannochloropsis sp. CCAP211/78. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045035 LOCUS AF045035 1792 bp DNA PLN 02-MAR-1998 DEFINITION Nannochloropsis sp. CCAP211/78 18S ribosomal RNA gene, complete sequence. ACCESSION AF045035 VERSION AF045035.1 GI:2921783 KEYWORDS . SOURCE Nannochloropsis sp. CCAP211/78. ORGANISM Nannochloropsis sp. CCAP211/78 Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1792) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Nannochloropsis sp. CCAP211/78" /strain="CCAP211/78" /db_xref="taxon:72521" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 473 a 355 c 480 g 482 t 2 others BASE COUNT 473 a 355 c 480 g 482 t 1483 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)SS|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuguaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nanno.sp.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Nannochloropsis sp. strain IOLR. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis sp. strain IOLR. ORGANISM Nannochloropsis sp. strain IOLR. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF067956 LOCUS AF067956 1799 bp DNA PLN 01-FEB-1999 DEFINITION Nannochloropsis sp. strain IOLR 18S ribosomal RNA gene, complete sequence. ACCESSION AF067956 VERSION AF067956.1 GI:4206067 KEYWORDS . SOURCE Nannochloropsis sp. strain IOLR. ORGANISM Nannochloropsis sp. strain IOLR Eukaryota; stramenopiles; Eustigmatophyceae; Nannochloropsis. REFERENCE 1 (bases 1 to 1799) AUTHORS Sukenik,A., Douek,J. and Livne,A. TITLE Molecular characterization of members of the Nannochloropsis genus (monodopsidacea, eustigmatophyceae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Sukenik,A. and Livne,A. TITLE Direct Submission JOURNAL Submitted (24-MAY-1998) Marine Biology, IOLR, P.O. Box 8030, Haifa 31080, Israel FEATURES Location/Qualifiers source 1..1799 /organism="Nannochloropsis sp. strain IOLR" /strain="IOLR" /db_xref="taxon:86508" rRNA 1..1799 /product="18S ribosomal RNA" BASE COUNT 476 a 360 c 482 g 481 t BASE COUNT 476 a 360 c 482 g 481 t 1474 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagagu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -uccuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(-- uua)-ACUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugca--(--- 1921 -uuguaa--- -------)-- -ggc-cccau cggcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|cuggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GC(--- ---------- ----gcuag- 2641 )GCCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--gga a-)ggacc-g gguaaucuu- gaaau]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAACU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGC ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAAUCGGUG AAG-CUUUCG GAu-ugcgc- ca-c-ugg-c 3061 ---------- ---------- ---------- --(cucg--- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-agaa|g uuaucuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Pse.minuta 3273 bp RNA RNA 24-JAN-191 DEFINITION Pseudocharaciopsis minuta. ACCESSION No information KEYWORDS No information. SOURCE Pseudocharaciopsis minuta. ORGANISM Pseudocharaciopsis minuta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U41052 LOCUS PTU41052 1798 bp DNA PLN 02-MAR-1998 DEFINITION Pseudocharaciopsis minuta 18S ribosomal RNA gene, complete sequence. ACCESSION U41052 VERSION U41052.1 GI:2921624 KEYWORDS . SOURCE Pseudocharaciopsis minuta. ORGANISM Pseudocharaciopsis minuta Eukaryota; stramenopiles; Eustigmatophyceae; Pseudocharaciopsis. REFERENCE 1 (bases 1 to 1798) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rRNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1798) AUTHORS Brett,R.W., Potter,D. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1798 /organism="Pseudocharaciopsis minuta" /strain="UTEX 2113" /db_xref="taxon:44430" rRNA 1..1798 /product="18S ribosomal RNA" BASE COUNT 459 a 370 c 497 g 472 t BASE COUNT 459 a 370 c 497 g 472 t 1475 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagggu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-AGUUUAU UUGAUAG<-- -ucccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G ACGGUAGG-( GUAUUGG)-C CU-ACCGU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(gu uaa)-GCUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-G- ugcu--(--- 1921 aucaaaa--- -------)-- -ggc-cccau cggcaccua- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA CU-AGUA--- --|ccggg-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-gg| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gguua- 2641 )GCCGAAG-A AGAUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--ggc a-)ggacc-g gguaaucuu- ggaac]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU CU(UGCAACU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUUCGGUG AAG-CUUUCG GAccugcgc- cg-c-ugg-c 3061 ---------- ---------- ---------- --(uucua-- -)-------- ---------- 3121 ---------- ---------- -guc----gg ca-gc----- gug-ggaa|g uuaucuaaac 3181 cucaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Vis.helvet 3273 bp RNA RNA 24-JAN-191 DEFINITION Vischeria helvetica. ACCESSION No information KEYWORDS No information. SOURCE Vischeria helvetica. ORGANISM Vischeria helvetica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF045051 LOCUS AF045051 1796 bp DNA PLN 02-MAR-1998 DEFINITION Vischeria helvetica UTEX49 18S ribosomal RNA gene, complete sequence. ACCESSION AF045051 VERSION AF045051.1 GI:2921799 KEYWORDS . SOURCE Vischeria helvetica. ORGANISM Vischeria helvetica Eukaryota; stramenopiles; Eustigmatophyceae; Vischeria. REFERENCE 1 (bases 1 to 1796) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis JOURNAL Protist 149, 61-74 (1998) REFERENCE 2 (bases 1 to 1796) AUTHORS Andersen,R.A., Brett,R.W., Potter,D. and Sexton,J.P. TITLE Direct Submission JOURNAL Submitted (29-JAN-1998) CCMP, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1796 /organism="Vischeria helvetica" /strain="UTEX49" /db_xref="taxon:44432" rRNA 1..1796 /product="18S ribosomal RNA" BASE COUNT 458 a 368 c 494 g 476 t BASE COUNT 458 a 368 c 494 g 476 t 1477 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCACGU CU-GAGA|-- -----|---- ---(----)[ auaaagggu- ---------- 121 ---uu-u-cu cuga-a]--- --------|- --UCU|-GCG AAUGGCUCAU UAUAUCAGUU 181 AU-UGUUUAU UUGAUAG<-- -u-guu--c- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUC-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GGU-(gu uaa)-GCUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-GGGA- UCGGUGG-U- ugcu--(--- 1921 aucucaa--- -------)-- -ggc-uccau cggcaccua- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA CU-AGUA--- --|ccgga-a aug-c(---- -uua------ 2401 ---------- ---------- -----)gcau u-gc-c-gg| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gguua- 2641 )GCCGAAGGA AGAU-GGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gucc(--ggc a-)ggacu-g gguaaucuu- gaaac]---- ---------- ------GCGC 2881 AUC-GUGAUA GGGAUAGAUU CU(UGCAACU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUUCGGUG AAG-CUUUCG GAc-cgcgc- cg-u-ugg-c 3061 ---------- ---------- ---------- --(uucua-- -)-------- ---------- 3121 ---------- ---------- -gcc----gg ca-gu----- gcg-ggaa|g uuaucuaaac 3181 cucaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Hyphoc 3273 bp RNA RNA 13-JAN-1999 DEFINITION Hyphochytriomycetes. ACCESSION No information KEYWORDS No information. SOURCE Hyphochytriomycetes. ORGANISM Hyphochytriomycetes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Hyp.cateno 3273 bp RNA RNA 26-JUL-1995 DEFINITION Hyphochytrium catenoides.; 18S ribosomal RNA. ACCESSION X80344 KEYWORDS 18S ribosomal RNA. SOURCE Hyphochytrium catenoides. ORGANISM Hyphochytrium catenoides. REFERENCE 1 (bases 1 to 1815) AUTHORS Van der Auwera,G., De Baere,R., Van de Peer,Y., De Rijk,P., Van Den Broeck,I. and De Wachter,R. TITLE The phylogeny of the Hyphochytriomycota as deduced from ribosomal RNA sequences of Hyphochytrium catenoides JOURNAL Mol. Biol. Evol. 12, 671-678 (1995) STANDARD No information REFERENCE 2 (bases 1 to 1815) AUTHORS Van Der Auwera,G.J.J. TITLE Direct Submission JOURNAL Submitted (15-JUL-1994) to the EMBL/GenBank/DDBJ databases. G.J.J. Van Der Auwera, Universitaire Instellung Antwerpen, Universiteitsplein 1, 2610 Wilrijk, Antwerpen, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X80344 NCBI gi: 927412 BASE COUNT 476 a 352 c 481 g 506 t 1458 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaacu cu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -uaucu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-U UAC)AAGUCU -G-GC-AAUU GGAAUGAGU| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-GGGA- UUGGCGG-G- cguu--(--- 1921 cuuuugau-- -------)-- -gac-uccgu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CCUGCUAA UU-AGUU--- --|gcgc--u aau-g(---- -cuuug---- 2401 ---------- ---------- -----)cauu g--g-u--u| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ----uu-gc| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCAAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ---------- ---------- ---------- |uucaccu-u 2821 ggcu(--gaa g-)agccu-g gguaaucuuu ugaaa]---- ---------- ------GUGC 2881 AUC-GUGCUA GGGAUAGACC AU(UGCAAUU A)UUGG-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAuUCGGUG AAA-AUUCCG GAc-cgcgg- uc-g-acu-g 3061 c-c------- ---------- ---------- --(cuug--- -)-------- ---------- 3121 ---------- --------gg -uga----uu ga-cc----- gug-ggaa|g uuauuuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUAc~~~ ~~~~~~~~|| ||| // LOCUS (4)-Labyri 3273 bp RNA RNA 13-JAN-1999 DEFINITION Labyrinthulida. ACCESSION No information KEYWORDS No information. SOURCE Labyrinthulida. ORGANISM Labyrinthulida. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Lab.sp.Nak 3273 bp RNA RNA 16-JUL-1999 DEFINITION Labyrinthula sp. Nakagiri.. ACCESSION No information KEYWORDS No information. SOURCE Labyrinthula sp. Nakagiri. ORGANISM Labyrinthula sp. Nakagiri. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022105 LOCUS AB022105 1621 bp DNA PLN 16-JUL-1999 DEFINITION Labyrinthula sp. Nakagiri gene for 18S rRNA. ACCESSION AB022105 NID g5509884 VERSION AB022105.1 GI:5509884 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Labyrinthula sp. Nakagiri (strain:Nakagiri) DNA. ORGANISM Labyrinthula sp. Nakagiri Eukaryota; stramenopiles; Labyrinthulida; Labyrinthulidae; Labyrinthula. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1621) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1621 /organism="Labyrinthula sp. Nakagiri" /strain="Nakagiri" /db_xref="taxon:87094" rRNA 1..1621 /product="18S rRNA" BASE COUNT 456 a 312 c 417 g 436 t BASE COUNT 456 a 312 c 417 g 436 t 1652 others ORIGIN 1 |~~~~~~~~~ CUGG-(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ acaagcac-- uu-------- 121 ---gu-a-uu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAAAAcaguu 181 au-aguuuau uugauaa<-- ----au-uu- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cuga|CCUAU 601 CAGCUGUA-G AUGGUAGA-( GUAUUGG)-C CU-ACCAU|G G-CGU-UCAC |GGGUAACGG 661 A|GAA-U(UA GG)GUUCGGU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- aca)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-CG AA-ACC-(ac uu-)-GGUUU -U-GU-AAUU GGAAUGAGU| ACAAU(G-UA 961 AAAC)CUU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CUGU-C- 1681 GUGGGUAUU| CGU-AUGAGC -AUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-GAU-CAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uugguga-a- cgu---(--- 1921 -agaauaa-- -------)-- --ac-gucau caguaccuc- -GCGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CUGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- GAGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCAUGAU UUUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUG AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGG---- --|cagc--g cau-u(cuug ---------- 2401 ---------- ---------- -----)aaug u--g-a-ug| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ----g-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCC-GG(--- ---------- ----gucua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CAAUG ACAGAG---- ---------- ----(----) [uc-agcgag 2761 -cuc------ -|-------- ----(----- --)------- ---------- |---uccu-g 2821 uauc(--gaa a-)gguau-g gggaaucuuu ucagu]---- ---------- ------CUCU 2881 GUC-GUGAUG GGGCUAGACC CU(UGUAAUU A)UUGG-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AGG( UCAUUAA)CC UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAG-UCU~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Apl.kergue 3273 bp RNA RNA 16-JUL-1999 DEFINITION Aplanochytrium kerguelense.. ACCESSION No information KEYWORDS No information. SOURCE Aplanochytrium kerguelense. ORGANISM Aplanochytrium kerguelense. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022103 LOCUS AB022103 1787 bp DNA PLN 16-JUL-1999 DEFINITION Aplanochytrium kerguelense gene for 18S rRNA. ACCESSION AB022103 NID g5509882 VERSION AB022103.1 GI:5509882 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Aplanochytrium kerguelense (strain:KMPB N-BA-107) DNA. ORGANISM Aplanochytrium kerguelense Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Aplanochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1787) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1787 /organism="Aplanochytrium kerguelense" /strain="KMPB N-BA-107" /db_xref="taxon:87111" rRNA 1..1787 /product="18S rRNA" BASE COUNT 484 a 347 c 458 g 498 t BASE COUNT 484 a 347 c 458 g 498 t 1486 others ORIGIN 1 |~~~~~~~~~ ~~GG-(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ gcaagcac-- uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -augcc-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aua)CGGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-CG GG-GCCC(-a uc-)GGGUCU -U-GU-AAUU GGAAUGAGU| ACAAU(C-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CA CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CAGU-U- 1681 GAGGAUAUU| CGU-AUGAAC -AUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-GAU-CAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA UCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-a- cguu--(--- 1921 guuuaauu-- -------)-- -gac-uccgc cagcaccuc- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G G-G-CUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUG--- --|ugcg--u auu-c(gaaa ---------- 2401 ---------- ---------- -----)gaau g--c-g-uu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CAAUG AUGAAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gguu(--gaa a-)agccu-g gguaaucuuu ugaac]---- ---------- ------UUUC 2881 GUC-GUGAUG GGGCUAGACC CU(UGCAAUU A)UUGG-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-UAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAA-UCUUCG GAc-cguga- cu-u-uga-u 3061 u-ug------ ---------- ---------- --(uucacu- -)-------- ---------- 3121 ---------- ---------- caaaa--cgc ug-uu----- aug-ggaa|g uugauuaaac 3181 cuuaccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAG-(UG AA)CCUGCA~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lab.minuta 3273 bp RNA RNA 24-JAN-191 DEFINITION Labyrinthuloides minuta. ACCESSION No information KEYWORDS No information. SOURCE Labyrinthuloides minuta. ORGANISM Labyrinthuloides minuta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L27634 LOCUS LADDLRRNA 1802 bp ss-rRNA RNA 22-MAR-1994 DEFINITION Labyrinthuloides minuta 16S-like ribosomal RNA (16S-like rRNA). ACCESSION L27634 KEYWORDS 16S-like rRNA; 16S-like ribosomal RNA. SOURCE Labyrinthuloides minuta rRNA. ORGANISM Labyrinthuloides minuta Eukaryota; Protista; Thraustochytridae. REFERENCE 1 (bases 1 to 1802) AUTHORS Leipe,D.D., Wainright,P.O., Gunderson,J.H., Porter,D., Patterson,D.J., Valois,F., Himmerich,S. and Sogin,M.L. TITLE The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis JOURNAL Phycologia (1994) In press STANDARD full automatic COMMENT NCBI gi: 463127 FEATURES Location/Qualifiers primer_bind 1..21 /note="these residues correspond to the 5' amplification primer and were not determined from the coding region" primer_bind 1779..1802 /note="these residues correspond to the 3' amplification primer and were not determined from the coding region" source 1..1802 /organism="Labyrinthuloides minuta" /sequenced_mol="rRNA" BASE COUNT 497 a 340 c 453 g 512 t ORIGIN BASE COUNT 497 a 340 c 453 g 512 t 1471 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ gcaagcac-- uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -auuuc-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aua)CGGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-CG GG-GCCC(-a uc-)GGGUCU -U-GU-AAUU GGAAUGAGU| ACAAU(C-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CAGU-UU 1681 GAGGAUAUU| CGU-AUGAAC -AUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-GAU-CAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA UCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-a- cguu--(--- 1921 gucuauau-- -------)-- -gac-uccgc cagcaccuc- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUG--- --|ugca--u auu-c(gaaa ---------- 2401 ---------- ---------- -----)gaau g--u-g-uu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CAAUG AUGAAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gguu(--gaa a-)agccu-g gguaaucuuu ugaac]---- ---------- ------UUUC 2881 GUC-GUGAUG GGGCUAGACC CU(UGCAAUU A)UUGG-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAA-UCUUCG GAu-ugaga- cu-u-uga-u 3061 u-ucu----- ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ---------g gaaaa--cgc ug-uu----- uua-aaaa|g uugauuaaac 3181 cuuaccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Sch.minutu 3273 bp RNA RNA 16-JUL-1999 DEFINITION Schizochytrium minutum.. ACCESSION No information KEYWORDS No information. SOURCE Schizochytrium minutum. ORGANISM Schizochytrium minutum. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022108 LOCUS AB022108 1794 bp DNA PLN 16-JUL-1999 DEFINITION Schizochytrium minutum gene for 18S rRNA. ACCESSION AB022108 NID g5509887 VERSION AB022108.1 GI:5509887 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Schizochytrium minutum (strain:KMPB N-BA-77) DNA. ORGANISM Schizochytrium minutum Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Schizochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1794) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1794 /organism="Schizochytrium minutum" /strain="KMPB N-BA-77" /db_xref="taxon:87103" rRNA 1..1794 /product="18S rRNA" BASE COUNT 486 a 330 c 463 g 515 t BASE COUNT 486 a 330 c 463 g 515 t 1479 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-- cu-------- 121 --uau-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -uaacu-uu- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-A(- aua)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-CG GG-GCC-(-u au-)-GGUCU -U-GU-AAUU GGAAUGAGU| ACAAU(C-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-UUAAA CCAUGCCGAC |UA|-ggga- uuggugg-a- cguu--(--- 1921 -aauugaac- -------)-- -gac-uucau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|ugcg--c uuu-c(uuug ---------- 2401 ---------- ---------- -----)gaaa g--c-g-ua| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGAAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGAAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 ggcu(--gag a-)agccugg gguaaucuuu uaaac]---- ---------- ------GUUC 2881 AUC-GUGAUG GGGCUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUAGUA 2941 CACGC-AAG( UCAUCAG)CU UGCAU-GGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACUU ACCGAUUGAA UGGUCCGGUG AAA-ACUUUG GAc-cguga- cu-u-ugc-c 3061 u-uucu---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- --------gg aaag---cgu ug-uc----- gug-ggaa|g uuguuuaaac 3181 cuuaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAG-(UG AA)CCUGC~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.multir 3273 bp RNA RNA 16-JUL-1999 DEFINITION Thraustochytrium multirudimentale.. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytrium multirudimentale. ORGANISM Thraustochytrium multirudimentale. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022111 LOCUS AB022111 1796 bp DNA PLN 16-JUL-1999 DEFINITION Thraustochytrium multirudimentale gene for 18S rRNA. ACCESSION AB022111 NID g5509890 VERSION AB022111.1 GI:5509890 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Thraustochytrium multirudimentale (strain:KMPB N-BA-113) DNA. ORGANISM Thraustochytrium multirudimentale Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Thraustochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1796) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1796 /organism="Thraustochytrium multirudimentale" /strain="KMPB N-BA-113" /db_xref="taxon:87105" rRNA 1..1796 /product="18S rRNA" BASE COUNT 483 a 335 c 461 g 517 t BASE COUNT 483 a 335 c 461 g 517 t 1477 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ uuaagcaa-- uu-------- 121 --uaa-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -uacuu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-CG GG-GCCA(-u uu-)UGGUCU -U-GU-AAUU GGAAUGAGU| ACAAU(A-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggugg-a- cguu--(--- 1921 -auuugaac- -------)-- -gac-uucau cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-- GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|ugcc--u uuu-c(ucac ---------- 2401 ---------- ---------- -----)gaaa g--g-g-ua| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| --uga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGAAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 ggcu(--gag a-)agccu-g gguaaucuuu uaaau]---- ---------- ------GUUC 2881 AUC-GUGAUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAA-UCUUUG GAc-cguga- cu-u-ugu-c 3061 u-ugcu---- ---------- ---------- --(uucg--- -)-------- ---------- 3121 ---------- --------gg cgaga--cgc ug-uu----- gug-ggaa|g uugauuaaac 3181 cuuaccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAG~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.aggreg 3273 bp RNA RNA 16-JUL-1999 DEFINITION Thraustochytrium aggregatum.. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytrium aggregatum. ORGANISM Thraustochytrium aggregatum. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022109 LOCUS AB022109 1681 bp DNA PLN 16-JUL-1999 DEFINITION Thraustochytrium aggregatum gene for 18S rRNA. ACCESSION AB022109 NID g5509888 VERSION AB022109.1 GI:5509888 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Thraustochytrium aggregatum (strain:KMPB N-BA-110) DNA. ORGANISM Thraustochytrium aggregatum Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Thraustochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1681) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1681 /organism="Thraustochytrium aggregatum" /strain="KMPB N-BA-110" /db_xref="taxon:87104" rRNA 1..1681 /product="18S rRNA" BASE COUNT 433 a 290 c 413 g 471 t 74 others BASE COUNT 433 a 290 c 413 g 471 t 1666 others ORIGIN 1 |~~~~~~~~~ ~~~GU(UGA) UCCU|GCCAG CUGUCA-UUU GCUCGUCUAA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacua-- au-------- 121 --uau-a-cg guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUcaguu 181 au-aguuucu uugauagAUUUGG -AUAACUGUG G(C-AAUU)C 241 UAGAGCUAA- CACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCCAU 601 CAGCUGUC-G AUGGUACG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UCAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGACGCU(UG AG-AGAC)GG CGACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUGGG-G(- acu)CCCCG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AAAAAUG-AG GA-GCGC(-u uu-)GCGUUU -U-UC-AAUU UGAAUGAGA| GAAUC(G-UA 961 CAAU)CCU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)C UCCA-G-|CU CCAAUAGCAA A|UAUUAG-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAAU-C- 1681 GGGGGUAUU| CGA-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-AGA-AAG- U-CGA-A-CU ACUGC(-GAA G)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|AA-AGAA CGAAA----- GUUAGGGGnn nnnn--nnn- n(n-nnnn-n -nnn)n-nnn 1861 nnnnn|nnnn -nnn-nnnnn nnnnnnnnnn |nn|-nnnn- nnnnnnn-n- ------(--n 1921 nnnnnnnnn- -------)-- -----cuggg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UU-UUUGG-U |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGC-UGCG| GCUUAAUUCG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAAGACAU- AGUAAGGAUU GACCAGA(UU GGAGAG-C)U 2161 CUUUCUGGAU -CUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GG-G CAUG|GC--| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUG--- --|gugc--a uau-u(guga ---------- 2401 ---------- ---------- -----)gaua u--g-u-ga| uuuga----- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| --ucg-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CC-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CAAUG ACAGAU---- ---------- ----(----) [uc-aacaag 2761 -ucc------ -|-----ggu agug(ggcuc ug)ugccua- uu-------- |-auuacu-u 2821 uucc(--gag a-)ggaau-g guuaaucuuc uaaau]---- ---------- ------GUCU 2881 GUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACCGCCGU 3001 CGCACUACCG AUUGAACGGU cuau-----G AAA--UUUCG GAu~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.pachyd 3273 bp RNA RNA 16-JUL-1999 DEFINITION Thraustochytrium pachydermum.. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytrium pachydermum. ORGANISM Thraustochytrium pachydermum. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022113 LOCUS AB022113 1795 bp DNA PLN 16-JUL-1999 DEFINITION Thraustochytrium pachydermum gene for 18S rRNA. ACCESSION AB022113 NID g5509892 VERSION AB022113.1 GI:5509892 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Thraustochytrium pachydermum (strain:KMPB N-BA-114) DNA. ORGANISM Thraustochytrium pachydermum Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Thraustochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1795) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1795 /organism="Thraustochytrium pachydermum" /strain="KMPB N-BA-114" /db_xref="taxon:87107" rRNA 1..1795 /product="18S rRNA" BASE COUNT 521 a 299 c 426 g 549 t BASE COUNT 521 a 299 c 426 g 549 t 1478 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~GA) UCCU|GCCAG UAGUCA-UAC GCUCAGGUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ auaaacua-- au-------- 121 --uau-a-cg guaa-a]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUcaguu 181 ag-auuuucu augguaa<-- uguaau-ua- auu>AGGUGG -AUAACCGAG G(U-AAUU)C 241 UUUGGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ----aaaccu ug-aa|cuuu cugc|CCUAU 601 CAGUUGUC-G AUUGUAGG-( GUAGUGG)-C CU-ACAAU|G A-CUU-UAAC |GGGUGACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGAGGCC(UU AG-AGAC)GG CCACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUGGU-G(- gaa)UGCCG- 781 A-GGU|A|-G UGACAAUUAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUUAUCG-CA GA-GCCA(-a uuu)UGGUUU -U-GU-U-AU GAAAUGAGU| GCAAU(U-UA 961 AAAC)UCU|C -AACGA-GG- AUC>AAUUGA AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU UCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUACAAA 1081 GC-CGUAGUU U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CU ACUGC(-GAA G)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACU-AUAAA CUAUGCCGAC |UU|-gcga- uuguuua-a- uggu--(--- 1921 guuuuu-ug- -------)-- -gcc-auaaa cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-- GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACC--GUC [CAG-ACAU- GAGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UUUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUA--- --|auau--u uua-a(gcaa ---------- 2401 ---------- ---------- -----)uuaa g--g-u-au| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGGAU---- ---------- ----(----) [uc-aacaag 2761 -uuu------ -|---uauuu aaaa(--uuu au)uuuaua- aauu------ |uuuuccu-u 2821 gauc(--gga a-)ggucu-g gguaaucuuu uaaau]---- ---------- ------GUCU 2881 AUC-GUGAUG GGGCUAGAUU --(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAA-UCUUCG GAu-uuugc- ac-a-uau-u 3061 g-a------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ---------- -ucau--uuu ga-gc----- aga-aaaa|g uugaguaaac 3181 cuuaccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAG-(UG AA)CCUGCA~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sch.aggreg 3273 bp RNA RNA 16-JUL-1999 DEFINITION Schizochytrium aggregatum.. ACCESSION No information KEYWORDS No information. SOURCE Schizochytrium aggregatum. ORGANISM Schizochytrium aggregatum. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Organism information Culture collection: ATCC 28209 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022106 LOCUS AB022106 1677 bp DNA PLN 16-JUL-1999 DEFINITION Schizochytrium aggregatum gene for 18S rRNA. ACCESSION AB022106 NID g5509885 VERSION AB022106.1 GI:5509885 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Schizochytrium aggregatum (strain:ATCC 28209) DNA. ORGANISM Schizochytrium aggregatum Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Schizochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1677) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1677 /organism="Schizochytrium aggregatum" /strain="ATCC 28209" /db_xref="taxon:4773" rRNA 1..1677 /product="18S rRNA" BASE COUNT 415 a 345 c 500 g 417 t BASE COUNT 415 a 345 c 500 g 417 t 1596 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~A AA|GAUUAAG 61 CCAUGCAUGC GA-UAGU|-- -----|---- ---(----)[ aua-guug-- gu-------- 121 ---aa-u-ca gcga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUcuguu 181 au-aauuccc augauug<-- ugcguu-gu- g-u>AGACGG -AUACAUGUG G(C-AAAU)C 241 UAGAAUCAA- UACGUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cagc|CCCAU 601 CAGUUGUC-G ACGGGAGG-( GUAUUGG)-C CU-CCCGU|G A-CCG-UUAC |GGGUGACGG 661 G|GAA-U(UA GG)GUUCGAG U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACUG- CAAGUU-C(u aca)GAACG- 781 A-AGU|A|-G UGACGAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUG-AG UG-CGCU(-g ug-)CGUAAU -C-UC-GACU GAAAUGAGA| GCAAU(U-UA 961 AAAC)CCC|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |CCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGA-AUUCUA -GUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UA 1741 C-UAG-AAG- G-CGA-A-CG ACUGC(-GAA A)-C|AUUUA CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAUGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CCAU -ACC-GUAAA CGAUGCCGAC |UC|-gcga- u-ggucc-c- cug---(--g 1921 cucuagugg- -------)-- --cg-ggggg cggca-cgc- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCCACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCCC| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUG AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUG--- --|cgcg--u ugu-g(gcga ---------- 2401 ---------- ---------- -----)caca g--u-g-ag| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| --gca-CUUC 2581 UUAGAGG]-- -|-------- -----GACAC UUU-GG(--- ---------- ----guuua- 2641 )CCAGAGGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACUGGG---- ---------- ----(----) [gg-agcacg 2761 -uug------ -|-----cuu uguc(---gu ac)gac-aa- ---------- |-cguccu-g 2821 ggcc(--gga a-)gguuu-g gguaaucgug ugaau]---- ---------- ------ACCA 2881 GUC-GUGAUG GGGCUAGAUC UU(UGCAAUU A)UUGA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU --ACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGUUCCGGUG AGA-CUUCGG AGg-gcacg- au-g-uuc-c 3061 u-g------- ---------- ---------- --(gcga--- -)-------- ---------- 3121 ---------- ---------- -cagg--acg ug~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.aureum 3273 bp RNA RNA 16-JUL-1999 DEFINITION Thraustochytrium aureum.. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytrium aureum. ORGANISM Thraustochytrium aureum. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Organism information Culture collection: ATCC 34304 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022110 LOCUS AB022110 1807 bp DNA PLN 16-JUL-1999 DEFINITION Thraustochytrium aureum gene for 18S rRNA. ACCESSION AB022110 NID g5509889 VERSION AB022110.1 GI:5509889 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Thraustochytrium aureum (strain:ATCC 34304) DNA. ORGANISM Thraustochytrium aureum Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Thraustochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1807) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1807 /organism="Thraustochytrium aureum" /strain="ATCC 34304" /db_xref="taxon:42467" rRNA 1..1807 /product="18S rRNA" BASE COUNT 456 a 356 c 501 g 494 t BASE COUNT 456 a 356 c 501 g 494 t 1466 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUAUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaaggc-- uu-------- 121 ---au-a-cu cuga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUcaguu 181 au-aguuucu uugauag<-- uguuuu-uu- c-u>ACAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAACAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uucaa|guuu cugc|CCCAU 601 CAGCUGUC-G AUGGUAGG-( GUAUAGG)-C CU-ACCAU|G G-CUG-UCAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACUC- AAUGUU-G(- acu)CGACG- 781 A-AGU|A|-G UGACGAGAAU U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CG GA-GCGC(-u ca-)GCGUUU -U-GC-AAUU GGAAUGAGA| GCAAU(G-UA 961 AAAG)CCU|C -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAG -AUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 U-CGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-GUAAA CUAUGCCGAC |UU|-gcga- uuguccg-g- cgucg-(--- 1921 -cuuuuaga- -------)-- ugac-cuggg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUG--- --|gccg--u uau-g(gcga ---------- 2401 ---------- ---------- -----)caua g--c-g-gu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guaua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUCGGU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|uuguuuuu uucu(c-auu uu)ggg-ag- gggg-cag-- |-aguccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------GCCG 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 GACGC-AAG( UCAUCAG)CU UGCAU-CGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUCCGGUG AGA-CCUUGG GAu-ucugu- ug-u-ggc-u 3061 g-a------- ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ---------- -uugg--cug cg-au----- ggg-agaa|c uugagcaaac 3181 cuuaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAG-(UG AA)CCUGC~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sch.limaci 3273 bp RNA RNA 16-JUL-1999 DEFINITION Schizochytrium limacinum.. ACCESSION No information KEYWORDS No information. SOURCE Schizochytrium limacinum. ORGANISM Schizochytrium limacinum. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022107 LOCUS AB022107 1678 bp DNA PLN 16-JUL-1999 DEFINITION Schizochytrium limacinum gene for 18S rRNA. ACCESSION AB022107 NID g5509886 VERSION AB022107.1 GI:5509886 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Schizochytrium limacinum (strain:NIBH SR21) DNA. ORGANISM Schizochytrium limacinum Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Schizochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1678) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1678 /organism="Schizochytrium limacinum" /strain="NIBH SR21" /db_xref="taxon:87102" rRNA 1..1678 /product="18S rRNA" BASE COUNT 398 a 287 c 403 g 443 t 147 others BASE COUNT 398 a 287 c 403 g 443 t 1742 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~CCU|-CCAG UAGUCA-UAU GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ auaagcga-- uu-------- 121 ---gu-a-cu guga-g]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUcagua 181 au-aauuucu ucgguag<-- --uuuc-uu- u-u>AUAUGG -AUACCUGCA G(U-AAUU)C 241 UGGAAAUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucgu uu-ga|guuu cugc|CCCAU 601 CAGUUGUC-G ACGGUAGU-( GUAUUGG)-A CU-ACGGU|G A-CUA-UAAC |GGGUGACGG 661 A|GAG-U(UA GG)GCUCGAC U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCAUAUC 721 (-CAAG-)GA U-AGCAGCA| GGC--GC-GU AAAUUACCC- ACUGUG-G(- acu)CCACG- 781 A-GGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCGAUG-CG AA-GUGG(-u au-)GCGUUU -U-GC-UAUC GGAAUGAGA| GCAAU(G-UA 961 AAAC)CCU|C -AUCGA-GG- AUC>AACUGG AG|GGCAA-G UC-UGGU-G( CCA-CAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAGAAGCAU A|UGCUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAG -GAG--CU-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 C-CGA-AAG- A-CGA-A-CU AGAGC(-GAA G)GC|AUUUA CCAA|G-CAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUCUGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUAG -ACC-GUAAA CGAUGCCGAC |UU|-gcga- uugu-ug-g- gugc------ 1921 -uuuuuaua- ---------- -ggg-nnnnn nnnnnnnnc- -AUNN(-GAA A)NNA--AA- 1981 CU-UUUGGGU |-U|CCGGGG -GNNNNNN-N NNN(NNAA)G NNN-N-AAA- --UUAAAGGA 2041 UUU-|--GGA AGGNNNCCNC -Cnnnggn|n GGGCCUGGC| GUUAAAUUUA (nCCCAACn) 2101 GGGN-NAAAC UUNNNNNNNN [NNN-NNNN- NNNNNNNNNN NNN-NNN(NN -NNNNN-N)N 2161 NNNNNNNNNN NNNNNNNN]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |NNNN-NNNN NNNN|NNN-| NN-NNNNN|N NNNNN|NNN- 2281 (NNNN)-NNN NNCUGG(UUA AUU)CCGUUA ACGAACGANA CCUCGG|--- ---------- 2341 ----(----- )[nnUACUAA AU-AGUG--- --|cgug--g uau-g(gcaa ---------- 2401 ---------- ---------- -----)caua g--u-a-cg| uu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| --uua-CUUC 2581 UUA-AGG]-- -|-------- -----GACAG UCC-G-(--- ---------- ----guu-a- 2641 )-CGGCAGG- AGUUCA--GC AAUAACA-GU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGGGU---- ---------- ----(----) [uc-aucggg 2761 -uuu------ -|----uaau ucau(----u uu)aug-gaa uug------- |-agugcu-u 2821 gguc(--gga a-)ggccu-g gcuaauccuu ggaac]---- ---------- ------GCUC 2881 AUC-GUGCUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAA UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGGUCCGAUG AAA-CCAUGG GAu-guuuc- ug-u-uug-g 3061 a--------- ---------- ---------- --(uuaauu- -)-------- ---------- 3121 ---------- ---------- --uuu--gga ca-ga----- ggc-agaa|c ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.striat 3273 bp RNA RNA 16-JUL-1999 DEFINITION Thraustochytrium striatum.. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytrium striatum. ORGANISM Thraustochytrium striatum. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Organism information Culture collection: ATCC 24473 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022112 LOCUS AB022112 1749 bp DNA PLN 16-JUL-1999 DEFINITION Thraustochytrium striatum gene for 18S rRNA. ACCESSION AB022112 NID g5509891 VERSION AB022112.1 GI:5509891 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Thraustochytrium striatum (strain:ATCC 24473) DNA. ORGANISM Thraustochytrium striatum Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Thraustochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1749) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1749 /organism="Thraustochytrium striatum" /strain="ATCC 24473" /db_xref="taxon:87106" rRNA 1..1749 /product="18S rRNA" BASE COUNT 457 a 323 c 454 g 515 t BASE COUNT 457 a 323 c 454 g 515 t 1524 others ORIGIN 1 |~~~~~~~~~ ~~~~~(UGA) UCCU|GCCAG UAAUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-- uu-------- 121 --uau-a-cu guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUcaguu 181 au-aguuucu uugauag<-- uguuu--uu- u-->AGAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAACAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCCAU 601 CAGCUGUC-G ACGGUAGU-( GUAUUGG)-A CU-ACCGU|G G-CCA-UCAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACUC- AAUGUU-G(- acu)CGACG- 781 A-AGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 ACACAUG-CG GU-GCAC(-u ca-)GUGUAU -U-GC-AAUG UGAAUGAGA| GCAAU(G-UA 961 AAAG)CCU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCAU A|UAUUAA-C GUUG--UUGC AG|UUGAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UG--AAG- A-CGA-A-CG ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-GUAAA CUAUGCCGAC |UU|-gcga- uuguccg-a- uguu--(--- 1921 --cguaaug- -------)-- -gac-uuggg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUU--- --|uagu--g uau-c(gcaa ---------- 2401 ---------- ---------- -----)gaua c-ug-u-uu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| --ugg-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 C-CACGCGCG -CUA-CACUG AUGAAU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|---uuuug uuuc(---uu ug)gaa-au- aaaa------ |-uguccu-u 2821 gauc(--gga a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------GUUU 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGGUCCGGUG AAA-UCUUGG GAu-uuguc- gu-a-ugu-g 3061 g-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ---------- -gucu--ugu au-ga----- cga-agaa|c uugaguaaac 3181 cuuaccgUUU AGA~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lab.haliot 3273 bp RNA RNA 24-JAN-191 DEFINITION Labyrinthuloides haliotidis. ACCESSION No information KEYWORDS No information. SOURCE Labyrinthuloides haliotidis. ORGANISM Labyrinthuloides haliotidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U21338 LOCUS LHU21338 1846 bp rRNA PLN 12-JUN-1995 DEFINITION Labyrinthuloides haliotidis 18S ribosomal RNA, partial sequence. ACCESSION U21338 KEYWORDS . SOURCE Labyrinthuloides haliotidis. ORGANISM Labyrinthuloides haliotidis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Labyrinthulida; Thraustochytriidae; Labyrinthuloides. REFERENCE 1 (bases 1 to 1846) AUTHORS Leipe,D.D., Goggin,C.L., Tong,S., Gunderson,J.H. and Sogin,M.L. TITLE Stramenopiles and heterokontophyte algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1846) AUTHORS Goggin,C.L. TITLE Direct Submission JOURNAL Submitted (21-FEB-1995) Carolyn L. Goggin, Parasitology, University of Queensland, Brisbane, Queensland, 4072, Australia COMMENT NCBI gi: 857458 FEATURES Location/Qualifiers source 1..1846 /organism="Labyrinthuloides haliotidis" /specific_host="Haliotis kamtschatkana and Haliotis rufescens" rRNA <1..>1846 /product="18S ribosomal RNA" BASE COUNT 508 a 353 c 467 g 518 t ORIGIN BASE COUNT 508 a 353 c 467 g 518 t 1427 others ORIGIN 1 |~~~~ccAAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-CAGU|-- -----|---- ---(----)[ auaagcua-- uu-------- 121 --aau-a-cg guga-a]--- --------|- --ACU|-GCG UACGGCUCAU UACAAcagua 181 au-aauauac augauau<-- uuaacu-au- c-u>ACAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAACAA- AACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-ga|guuu cugc|CCCAU 601 CAGUUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G A-CUG-UAAC |GGGUGACGG 661 A|GAA-U(CA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACUC- AAUGUC-A(- auu)CGACG- 781 A-AGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACCAUG-GG GA-GCCC(-u uc-)GGGUUU -C-CC-AAUG GGAAUGAGA| GCAAU(G-UA 961 AAUA)CCU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UACUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAG -AUG--UC-A GA-G(GU-GA AA---)UUCU -UAGA-U-UU 1741 U-CGA-AAG- A-CGA-A-CU ACUGC(-GAA G)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-GUAAA CUAUGCCGAC |UU|-gcga- uuguccg-a- uguu--(--- 1921 uauuuuaua- -------)-- agac-acggg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -AAGCGAU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- GGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACGG|--- ---------- 2341 ----(----- )[CCUAUUAA AU-AGUA--- --|cgac--u uau-g(guaa ---------- 2401 ---------- ---------- -----)caua g--g-u-ug| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUCGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUCGUU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------u ucau(---cu ug)aug-aa- ---------- |-uauccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuuu uaaau]---- ---------- ------GACG 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUCCCUAGUA 2941 AAUGC-AAG( UCAUCAA)CU UGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUCCGGUG AGA-CCUUUG GAu-ucugu- au-u-cga-a 3061 c-uuuuauua gaacuuauac ggaagaaauu gagcaaaccu -uaacauuua gaggaaggug 3121 aagucguaca ggguuuc-cg -aac----uu au-ac----- gga-agaa|a uugagcaaac 3181 cuuaacaUUU AGAGGAAGGU GAAG-UCGUA -CAGGGUUU- CCGnnnn(nn nn)nnnnnnn 3241 nnnnnnnn-- ---nnn~~~~ ~~~~~~~~|| ||| // LOCUS Japono.sp. 3273 bp RNA RNA 16-JUL-1999 DEFINITION Japonochytrium sp. ATCC 28207.. ACCESSION No information KEYWORDS No information. SOURCE Japonochytrium sp. ATCC 28207. ORGANISM Japonochytrium sp. ATCC 28207. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Organism information Culture collection: ATCC 28207 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022104 LOCUS AB022104 1760 bp DNA PLN 16-JUL-1999 DEFINITION Japonochytrium sp. ATCC 28207 gene for 18S rRNA. ACCESSION AB022104 NID g5509883 VERSION AB022104.1 GI:5509883 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Japonochytrium sp. ATCC 28207 (strain:ATCC 28207) DNA. ORGANISM Japonochytrium sp. ATCC 28207 Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Japonochytrium. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1760) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1760 /organism="Japonochytrium sp. ATCC 28207" /strain="ATCC 28207" /db_xref="taxon:87093" rRNA 1..1760 /product="18S rRNA" BASE COUNT 464 a 316 c 476 g 504 t BASE COUNT 464 a 316 c 476 g 504 t 1513 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-- uu-------- 121 --uau-a-cg guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAAAAcaguu 181 au-aguuucu uugaaaa<-- uguuu--ga- u-u>AGAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAAUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---g-uucau uc-aa|guuu cugc|CCCAU 601 CAAUUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G A-UUG-UUAC |GGGUGACGG 661 A|GAA-U(CA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACUC- AAUGUC-A(- auu)CGACG- 781 A-AGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUG-GG GU-GGGC(-u aa-)GCCUAC -U-CU-UUCU GUAAUGAGA| GCAAU(C-UA 961 AAAC)CCU|C -AUCGA-GG- AUC>AACUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)C UCCA-G-|CU CCGGUAGCGU G|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUGG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CAA-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA --CC-GUAAA CGAUGCC-AC |UU|-gcga- uuguccg-a- uguuu-(--- 1921 uuuuuuaau- -------)-- agac-uuggg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AA-- -CUUAAAGGA 2041 AUU-|ACGGA AGGGCACCAC -CAGGAGU|G G-GCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCU--|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUA--- --|cgug--c uau-g(guga ---------- 2401 ---------- ---------- -----)caua g--u-ggcg| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGGAU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|guguuguu uguu(---ua ac)gau-ga- auga-c---- |-gguccu-a 2821 gaca(--gga a-)ugucc-g ggcaaucuuu uaaau]---- ---------- ------GUCC 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU C)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 ---------( GCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUCCGGUG AAA-UCUUCG GAu-ccugu- ug-u-uuu-g 3061 c-g------- ---------- ---------- --(uuuguu- -)-------- ---------- 3121 ---------- ---------- -cgug--uga ug-ac----- ggg-aaaa|g uugaguaaac 3181 cuuaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAG-(UG A-)CCUGCA~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS par.QPX.1 3273 bp RNA RNA 24-JAN-191 DEFINITION labyrinthulid quahog parasite QPX. ACCESSION No information KEYWORDS No information. SOURCE labyrinthulid quahog parasite QPX. ORGANISM labyrinthulid quahog parasite QPX. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF261664 LOCUS AF261664 1794 bp DNA PLN 09-AUG-2000 DEFINITION Labyrinthulid quahog parasite QPX small subunit ribosomal RNA gene, complete sequence. ACCESSION AF261664 VERSION AF261664.1 GI:9755031 KEYWORDS . SOURCE labyrinthulid quahog parasite QPX. ORGANISM labyrinthulid quahog parasite QPX Eukaryota; stramenopiles; Labyrinthulida; unclassified Labyrinthulida. REFERENCE 1 (bases 1 to 1794) AUTHORS Ragan,M.A., MacCallum,G.S., Murphy,C.A., Cannone,J.J., Gutell,R.R. and McGladdery,S.E. TITLE Protistan parasite QPX of hard-shell clam Mercenaria mercenaria is a member of Labyrinthulomycota JOURNAL Unpublished REFERENCE 2 (bases 1 to 1794) AUTHORS Ragan,M.A., MacCallum,G.S., Murphy,C.A., Cannone,J.J., Gutell,R.R. and McGladdery,S.E. TITLE Direct Submission JOURNAL Submitted (27-APR-2000) NRC Institute for Marine Biosciences, 1411 Oxford St., Halifax, NS B3H 3Z1, Canada FEATURES Location/Qualifiers source 1..1794 /organism="labyrinthulid quahog parasite QPX" /db_xref="taxon:96639" rRNA 1..1794 /product="small subunit ribosomal RNA" BASE COUNT 475 a 335 c 460 g 524 t BASE COUNT 475 a 335 c 460 g 524 t 1479 others ORIGIN 1 |~~~~~~UAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCAAGUCA AA|GAUUAAC 61 CCAUGCAUGU GC-AAGU|-- -----|---- ---(----)[ auaaacau-- uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUcagcu 181 au-agucuau uugguaa<-- uguc---ua- c-u>ACUUGG -AUACUCGUA G(U-AAUU)C 241 UAGGGUCAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaccau uc-ga|guuu cugc|CCUAU 601 CAGUUGUC-G UAGGUAGU-( GUAUUGG)-A CU-ACCUA|G A-CCU-UUAC |GGGUGACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA AGAAGCC(UG AG-AGAC)GG CUACUACAUC 721 (-CAAG-)GA A-GGCAGCA| GGG--GC-GC AAAUUACCC- AAUGGU-G(- aca)CGCCG- 781 A-GGU|A|-G UGACAACCAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AUCGUUG-CG GA-GCCC(-u uau)GGGUUU -U-GC-U-AU GAAAUGAGU| GCAAU(C-UA 961 AAAU)ACU|C -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCGUUAGCGU A|UAUUAA-A UUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CU ACUGC(-GAA G)GC|AUUUA CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAUGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUAU -ACU-UCAAA CUAUGCCGAC |UU|-gcga- uugucug-g- uggu--(--- 1921 guuuuu-ug- -------)-- -gcc-ccagg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G AUU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUA--- --|cugc--u uuu-c(gcaa ---------- 2401 ---------- ---------- -----)gaaa g--g-u-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGGAU---- ---------- ----(----) [uc-aacaag 2761 -uuu------ -|-------a cuau(----u uu)aua-gu- ---------- |-uguccu-u 2821 gguc(--gga a-)ggccu-g gguaaucuuu uaaau]---- ---------- ------GUCU 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CUAACGAGGA AUUCCUAGUA 2941 AGCGC-AAG( UCAUCAA)CU UGCAC-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAA-UCUUCG GAu-ucugc- au-u-uug-u 3061 u-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ---------- -gggc--agu uu-gc----- gga-aaaa|g uugagugaac 3181 cuuaccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 CAGGAUCA-- ---UUG~~~~ ~~~~~~~~|| ||| // LOCUS par.QPX.2 3273 bp RNA RNA 24-JAN-191 DEFINITION labyrinthulid quahog parasite QPX. ACCESSION No information KEYWORDS No information. SOURCE labyrinthulid quahog parasite QPX. ORGANISM labyrinthulid quahog parasite QPX. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF155209 LOCUS AF155209 1744 bp DNA PLN 01-DEC-1999 DEFINITION Labyrinthulid quahog parasite QPX 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION AF155209 VERSION AF155209.1 GI:6492308 KEYWORDS . SOURCE labyrinthulid quahog parasite QPX. ORGANISM labyrinthulid quahog parasite QPX Eukaryota; stramenopiles; Labyrinthulida; unclassified Labyrinthulida. REFERENCE 1 (bases 1 to 1744) AUTHORS Maas,P.A.Y., Kleinschuster,S.J., Dykstra,M.J., Smolowitz,R. and Parent,J. TITLE Molecular characterization of QPX (Quahog Parasite Unknown), a pathogen of Mercenaria mercenaria JOURNAL J. Shellfish Res. (1999) In press REFERENCE 2 (bases 1 to 1744) AUTHORS Maas,P.A.Y. TITLE Direct Submission JOURNAL Submitted (29-MAY-1999) C.T.A.G., Rutgers University, 71 Dudley Road, New Brunswick, NJ 08901-8521, USA FEATURES Location/Qualifiers source 1..1744 /organism="labyrinthulid quahog parasite QPX" /db_xref="taxon:96639" /note="most of the sequence determined by sequencing both strands" rRNA <1..>1744 /product="18S small subunit ribosomal RNA" BASE COUNT 463 a 324 c 446 g 511 t BASE COUNT 463 a 324 c 446 g 511 t 1529 others ORIGIN 1 |~~~~~~~~~ ~~~GU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCAAGUCA AA|GAUUAAC 61 CCAUGCAUGU GC-AAGU|-- -----|---- ---(----)[ auaaacau-- uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAUAUcagcu 181 au-agucuau uugguaa<-- uguc---ua- c-u>ACUugg -AUACUCGUA G(U-AAUU)C 241 UAGGGUCAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaccau uc-ga|guuu cugc|CCUAU 601 CAGUUGUC-G UAGGUAGU-( GUAUUGG)-A CU-ACCUA|G A-CCU-UUAC |GGGUGACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA AGAAGCC(UG AG-AGAC)GG CUACUACAUC 721 (-CAAG-)GA A-GGCAGCA| GGG--GC-GC AAAUUACCC- AAUGGU-G(- aca)CGCCG- 781 A-GGU|A|-G UGACAACCAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 aucguug-cg ga-gccc(-u uau)ggguuu -u-gc-uau- gaAAUGAGU| GCAAU(C-UA 961 AAAU)ACU|C -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCGUUAGCGU A|UAUUAA-A UUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CU ACUGC(-GAA G)GC|AUUUA CCAA|G-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUAUGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUAU -ACU-UCAAA CUAUGCCGAC |UU|-gcga- uugucug-g- uggu--(--- 1921 guuuuu-ug- -------)-- -gcc-ccagg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G ACU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUA--- --|cugc--u uuu-c(gcaa ---------- 2401 ---------- ---------- -----)gaaa g--g-u-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACau uuc-gg(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGGAU---- ---------- ----(----) [uc-aacaag 2761 -uuu------ -|-------a cuau(----u uu)aua-gu- ---------- |-uguccu-u 2821 gguc(--gga a-)ggccu-g gguaaucuuu uaaau]---- ---------- ------GUCU 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CUAACGAGGA AUUCCUAGUA 2941 AGCGC-AAG( UCAUCAA)CU UGCAC-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCGGUG AAA-UCUUCG GAu-ucugc- au-u-uug-u 3061 u-c------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ---------- --gggcaguu ugc------- gga-aaaa|g uugagugaac 3181 cuuaccaUUU AGAGGAAGGU GAA~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ulkeni.sp. 3273 bp RNA RNA 24-JAN-191 DEFINITION Ulkenia sp. HUBOL-1. ACCESSION No information KEYWORDS No information. SOURCE Ulkenia sp. HUBOL-1. ORGANISM Ulkenia sp. HUBOL-1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB019134 LOCUS AB019134 564 bp DNA PLN 08-JAN-2000 DEFINITION Ulkenia sp. HUBOL-1 gene for 18S rRNA, partial sequence. ACCESSION AB019134 VERSION AB019134.1 GI:3869155 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Ulkenia sp. HUBOL-1 (isolate:HUBOL-1) DNA. ORGANISM Ulkenia sp. HUBOL-1 Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Ulkenia. REFERENCE 1 (sites) AUTHORS Kimura,H., Fukuba,T. and Naganuma,T. TITLE Biomass of thraustochytrid protoctists in coastal water JOURNAL Mar. Ecol. Prog. Ser. 189, 27-33 (1999) REFERENCE 2 (bases 1 to 564) AUTHORS Kimura,H. and Naganuma,T. TITLE Direct Submission JOURNAL Submitted (22-OCT-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Kimura, Hiroshima University, Faculty of Applied Biological Science; 1-4-4 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8528, Japan (E-mail:hirok@ipc.hiroshima-u.ac.jp, Tel:81-824-24-7986, Fax:81-824-22-7059) FEATURES Location/Qualifiers source 1..564 /organism="Ulkenia sp. HUBOL-1" /isolate="HUBOL-1" /db_xref="taxon:83855" rRNA <1..>564 /product="18S rRNA" BASE COUNT 157 a 121 c 124 g 158 t 4 others BASE COUNT 157 a 121 c 124 g 158 t 2713 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAAU|-- -----|---- ---(----)[ auaagcga-- au-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUcaguu 181 au-aguuucu uugauaa<-- uguc---uu- u-u>AAUUGG -AUAAUUGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-ga|guuu cugc|CCCAU 601 CAGCUGUC-G AUGAUUAU-( GUAUUGG)-C UA-AUCCU|G G-CCA-UCAC |GGGUAACGG 661 A|NAA-U(UA GG)GUUUGAU CCCCG|GAGA AGANGCC(UG AAAAUAC)GG CCGCCACAUC 721 (CCAAA-)GA A-GGCAGCA| GGC--GCCUU AAAUUACCU- CAUCCA-C(- acu)CUGCG- 781 AAGGU|A|-G UGACGAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 aacaucg-ca ga-acac(-c uu-)guguuu -uggc-UUUU GAAAUGAGU| GC-AU(G-UA 961 CACU)-CU|C -AACGA-UG- AUC>AAUUGG GA|GGGCn-n UC-UGGU-G( CCA-CCACC- 1021 |GCG~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1801 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~)~~~~~ 1861 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1921 ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 1981 ~~~~~~~~~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~| ~~~~~~~~~~ (~~~~~~~~) 2101 ~~~~~~~~~~ ~~~~~~~~~~ [~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~)~ 2161 ~~~~~~~~~~ ~~~~~~~~]~ ~~~~~~~|~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 2221 (~~~~)~~~~ |~~~~~~~~~ |~~~~~~~~~ ~~~~|~~~~| ~~~~~~~~|~ ~~~~~|~~~~ 2281 (~~~~)~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 2341 ~~~~(~~~~~ )[~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~-~ ~~~~~(~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~-~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~-~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~| ~~~~~~~~~~ 2581 ~~~~~~~]~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) [~~~~~~~~~ 2761 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2821 ~~~~(--~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~]~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ulk.prof.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Ulkenia profunda. ACCESSION No information KEYWORDS No information. SOURCE Ulkenia profunda. ORGANISM Ulkenia profunda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L34054 LOCUS ULKRRE 1815 bp ss-rRNA RNA 29-OCT-1994 DEFINITION Ulkenia profunda 18S ribosomal RNA (18S rRNA). ACCESSION L34054 KEYWORDS 18S ribosomal RNA. SOURCE Ulkenia profunda (tissue library: N3077a) rRNA. ORGANISM Ulkenia profunda Eukaryota; Protozoa. REFERENCE 1 (bases 1 to 1815) AUTHORS Cavalier-Smith,T., Allsopp,M.T.E. and Chao,E.E. TITLE Thraustochytrids are chromists, not fungi: 18s rRNA signatures of Heterokonta JOURNAL Philos. Trans. R. Soc. Lond., B, Biol. Sci. (1994) In press STANDARD full automatic COMMENT Author supplied classification: Chromista, Heterokonta, Labyrinthulea. NCBI gi: 561884 FEATURES Location/Qualifiers source 1..1815 /organism="Ulkenia profunda" /sequenced_mol="rRNA" /tissue_lib="N3077a" rRNA 1..1815 /gene="18S rRNA" BASE COUNT 489 a 335 c 475 g 516 t ORIGIN BASE COUNT 489 a 335 c 475 g 516 t 1458 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAAUCG-CAC GCUGGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ uuaagcaa-- uu-------- 121 ---aa-a-cg guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAAAUcaguu 181 au-aguuccu uugaaaa<-- uguuuu-ca- uuu>AGGUGG -AUACUUGUG G(C-AAAU)C 241 UAGAACUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ----guucau uc-aa|guuu cugc|CCCAU 601 CAAUUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G A-UUG-UUAC |GGGUGACGG 661 A|GAA-U(CA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACUC- AAUGUC-A(- auu)CGACG- 781 A-AGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUG-GG GU-GGGC(-u uc-)GCCUAC -U-CU-UUCU GUAAUGAGA| GCAAU(C-UA 961 AAAA)CCU|C -AUCGA-GG- AUC>AACUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)C UCCA-G-|CU CCGGUAGCGU G|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUGG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CAA-AAG- A-CGA-A-CA ACUGC(-GAA G)-C|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-GUAAA CGAUGCCGAC |UU|-gcga- uuguccg-a- uguu--(--- 1921 uguuauaa-- -------)-- -gac-uuggg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| -CUCAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUA--- --|cgcg--u uau-g(guaa ---------- 2401 ---------- ---------- -----)caua g--cag-ug| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGGAU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|uguucuau gcuu(---uu cg)gag-ug- uggg-a---- |-uguccu-g 2821 ggca(--gga a-)ugucu-g gguaaucuuu uaaau]---- ---------- ------GUCC 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUCCGGUG AAA-UCUUCG GAu-ucugu- ca-u-guu-g 3061 c-cu------ ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ---------- -agug--gua ug-ac----- ggg-aaaa|g uugaguaaac 3181 cuuaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ulk.prof.2 3273 bp RNA RNA 16-JUL-1999 DEFINITION Ulkenia profunda.. ACCESSION No information KEYWORDS No information. SOURCE Ulkenia profunda. ORGANISM Ulkenia profunda. REFERENCE 1 (bases 1 to 1815) AUTHORS and Schaumann,K. Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. TITLE based on the sequencing of 18S ribosomal RNA gene Molecular phylogeny of labyrinthulids and thraustochytrids JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022114 LOCUS AB022114 1707 bp DNA PLN 16-JUL-1999 DEFINITION Ulkenia profunda gene for 18S rRNA. ACCESSION AB022114 NID g5509893 VERSION AB022114.1 GI:5509893 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Ulkenia profunda (strain:Raghukumar 29) DNA. ORGANISM Ulkenia profunda Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Ulkenia. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1707) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1707 /organism="Ulkenia profunda" /strain="Raghukumar 29" /db_xref="taxon:37095" rRNA 1..1707 /product="18S rRNA" BASE COUNT 460 a 299 c 455 g 493 t BASE COUNT 460 a 299 c 455 g 493 t 1566 others ORIGIN 1 |~~~~~~~~~ CUGGU(UGA) UCCU|GCCAG UAAUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ auaaagga-u uu-------- 121 --aau-a-c- -uga-g]--- --------|- --ACU|-GCG AACGGCUCAA GACAAcaguu 181 au-cguuucu uugauag<-- uguuu--ug- u-u>AGAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAACAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCCAU 601 CAGUUGUC-G ACGGUAGU-( GUAUUGG)-A CU-ACCGU|G A-CAG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACUC- AAUGUC-A(- auu)CGACG- 781 A-AGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-AG GA-GCGC(-a uc-)GCGUUU -C-UC-GAUU GGAAUGAGA| GCAAU(U-UA 961 AAAA)CCU|C -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAG -AUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA---UU 1741 U-CGA-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU G-UUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-GUAAA CUAUGCCGAC |UG|-gcga- uugucuc-u- uuau--(--- 1921 --cuuauaa- -------)-- -gag-ggagg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGCG--- --|uugu--g aau-g(guga ---------- 2401 ---------- ---------- -----)cauu c--a-u-ga| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| --gag-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUCGGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|--uucuug uucu(---uu ua)gga-au- gaga-a---- |--guccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuuu ugaac]---- ---------- ------GCCG 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUCCGGUG AGA-CCUUGG GAu-ucuau- gu-u-gau-u 3061 g-a------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ---------- -uuga--uug au-g~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ulk.radiat 3273 bp RNA RNA 16-JUL-1999 DEFINITION Ulkenia radiata.. ACCESSION No information KEYWORDS No information. SOURCE Ulkenia radiata. ORGANISM Ulkenia radiata. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022115 LOCUS AB022115 1691 bp DNA PLN 16-JUL-1999 DEFINITION Ulkenia radiata gene for 18S rRNA. ACCESSION AB022115 NID g5509894 VERSION AB022115.1 GI:5509894 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Ulkenia radiata (strain:Raghukumar 16) DNA. ORGANISM Ulkenia radiata Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Ulkenia. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1691) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1691 /organism="Ulkenia radiata" /strain="Raghukumar 16" /db_xref="taxon:87108" rRNA 1..1691 /product="18S rRNA" BASE COUNT 452 a 293 c 446 g 482 t 18 others BASE COUNT 452 a 293 c 446 g 482 t 1600 others ORIGIN 1 |~~~~~~~~~ ~UGGU(UGA) UCCU|GCCAG UAAUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ auaaagga-u uu-------- 121 --aau-a-c- -uga-g]--- --------|- --ACU|-GCG AACGGCUCAA GACAAcaguu 181 au-cguuucu uugauag<-- uguuu--ug- u-u>AGAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAACAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCCAU 601 CAGUUGUC-G ACGGUAGU-( GUAUUGG)-A CU-ACCGU|G A-CAG-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACUC- AAUGUC-A(- auu)CGACG- 781 A-AGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-AG GA-GCGC(-a uc-)GGUUUU -C-UC-GAUU GGAAUGAGA| GCAAU(U-UA 961 AAAA)CCU|C -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ----G GA|CAGU-U- 1681 GGGG-UA-U| CGU-AUU-AG -A-G--UC-A GA-G(UG-NN NN---)NNNN -NNNN-N-NN 1741 N-NNA-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-GUAAA CUAUGCCGAC |UU|-gcga- uugucuc-u- uuau--(--- 1921 --cuuaua-- -------)-- -gag-ggagg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGCG--- --|uugu--g aau-g(guga ---------- 2401 ---------- ---------- -----)cauu c--a-u-ga| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| --gag-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----guuua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUCGGU---- ---------- ----(----) [uc-aacgag 2761 -uua------ -|--uucuug uucu(---uu ua)gga-au- gaga-a---- |--guccu-u 2821 ggcc(--gga a-)ggucu-g gguaaucuuu ugaac]---- ---------- ------GCCG 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU A)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUC-G)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU A-ACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUCCGGUG AGA-CCUUGG GAu-ucuau- gu-u-gau-u 3061 g-a------- ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ---------- -uuga--uug au-gu~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ulk.visurg 3273 bp RNA RNA 16-JUL-1999 DEFINITION Ulkenia visurgensis.. ACCESSION No information KEYWORDS No information. SOURCE Ulkenia visurgensis. ORGANISM Ulkenia visurgensis. REFERENCE 1 (bases 1 to 1815) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press STANDARD No information COMMENTS Organism information Culture collection: ATCC 28208 Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB022116 LOCUS AB022116 1812 bp DNA PLN 16-JUL-1999 DEFINITION Ulkenia visurgensis gene for 18S rRNA. ACCESSION AB022116 NID g5509895 VERSION AB022116.1 GI:5509895 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Ulkenia visurgensis (strain:ATCC 28208) DNA. ORGANISM Ulkenia visurgensis Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae; Ulkenia. REFERENCE 1 (sites) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A. and Schaumann,K. TITLE Molecular phylogeny of labyrinthulids and thraustochytrids based on the sequencing of 18S ribosomal RNA gene JOURNAL J. Eukaryot. Microbiol. (1999) In press REFERENCE 2 (bases 1 to 1812) AUTHORS Honda,D., Yokochi,T., Nakahara,T., Raghukumar,S., Nakagiri,A., Schaumann,K. and Higashihara,T. TITLE Direct Submission JOURNAL Submitted (08-JAN-1999) to the DDBJ/EMBL/GenBank databases. Daiske Honda, National Institute of Bioscience and Human-Technology, Applied Microbiology Department; Higashi 1-1, Tsukuba, Ibaraki 305-0046, Japan (E-mail:daiske.honda@kamaishi.mbio.co.jp, Tel:81-298-54-6162, Fax:81-298-54-6172) FEATURES Location/Qualifiers source 1..1812 /organism="Ulkenia visurgensis" /strain="ATCC 28208" /db_xref="taxon:87109" rRNA 1..1812 /product="18S rRNA" BASE COUNT 480 a 329 c 488 g 515 t BASE COUNT 480 a 329 c 488 g 515 t 1461 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UAAUCG-CAC GCUUGUCUCA AA|GACUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-- uu-------- 121 --uau-a-cg guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAAAAcaguu 181 au-aguuucu uugaaaa<-- uguuu--ga- u-u>AGAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAAUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---g-uucau uc-aa|guuu cugc|CCCAU 601 CAAUUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G A-UUG-UUAC |GGGUGACGG 661 A|GAA-U(CA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACUC- AAUGUC-A(- auu)CGACG- 781 A-AGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAGUG-GG GU-GGGC(-u aa-)GCCUAC -U-CU-UUCU GUAAUGAGA| GCAAU(C-UA 961 AAAC)CCU|C -AUCGA-GG- AUC>AACUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)C UCCA-G-|CU CCGGUAGCGU G|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUGG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CAA-AAG- A-CGA-A-CA ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-GUAAA CGAUGCCGA- -UU|-gcga- uuguccg-a- uguuu-(-uu 1921 uuauugaau- -------)-- agac-uuggg cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUA--- --|cgug--c uau-g(guga ---------- 2401 ---------- ---------- -----)caua g--u-ggcg| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 C-CACGCGCG -CUA-CACUG AuGGAU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|guguuguu uguu(---ua ac)gau-ga- auga-c---- |-gguccu-a 2821 gaca(--gga a-)ugcc--g ggcaaucuuu uaaau]---- ---------- ------GUCC 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU C)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGAUCCGGUG AAA-UCUUCG GAu-ccugu- ug-u-uuu-g 3061 c-g------- ---------- ---------- --(uuuguu- -)-------- ---------- 3121 ---------- ---------- -cgug--uga ug-ac----- ggg-aaaa|g uugaguaaac 3181 cuuaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAG-(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.kinnei 3273 bp RNA RNA 24-JAN-191 DEFINITION Thraustochytrium kinnei. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytrium kinnei. ORGANISM Thraustochytrium kinnei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L34668 LOCUS TUKRRE 1821 bp ss-rRNA RNA 29-OCT-1994 DEFINITION Thraustochytrium kinnei 18S ribosomal RNA (18S rRNA). ACCESSION L34668 KEYWORDS 18S ribosomal RNA. SOURCE Thraustochytrium kinnei (strain 1694d) rRNA. ORGANISM Thraustochytrium kinnei Eukaryota; Protozoa. REFERENCE 1 (bases 1 to 1821) AUTHORS Cavalier-Smith,T., Allsopp,M.T.E. and Chao,E.E. TITLE Thraustochytrids are chromists, not fungi: 18s rRNA signatures of Heterokonta JOURNAL Philos. Trans. R. Soc. Lond., B, Biol. Sci. (1994) In press STANDARD full automatic COMMENT Author supplied classification: Chromista, Heterokonta, Labyrinthulea. NCBI gi: 561883 FEATURES Location/Qualifiers source 1..1821 /organism="Thraustochytrium kinnei" /strain="1694d" /sequenced_mol="rRNA" rRNA 1..1821 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 457 a 347 c 498 g 519 t ORIGIN BASE COUNT 457 a 347 c 498 g 519 t 1452 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCG-UAC GCUUGUUUCA AA|GGUUAAG 61 CCAUGCAUGU CU-CAGU|-- -----|---- ---(----)[ guaaacuc-a uu-------- 121 ---gc-a-ca guga-a]--- --------|- --ACU|-GCG AACGGCUCAU UAAAUcgguu 181 cu-agucucc agagugg<-- uguuuucaau c-u>AAAUGG -AUACUUGUG G(C-AAAU)C 241 UAGAAACAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ----gacuuu au-ga|gguu cugc|CCUAU 601 CAGG-cuu-- UGCAACGG-( GUAUUGU)-C CU-UUGCA|A C-CGG-UCAC |GGGUGACGG 661 A|GAA-U(CA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACUC- UAUGCC-A(- acg)CGGCG- 781 A-AGU|A|-G UGACGAAAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGGACUG-GG UA-GCGC(-u uu-)GCGUUA -U-CU-UUGU CCAAUGAGA| GCAAU(G-UA 961 AAAG)CCU|C -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|CACUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUC U|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAAU-U- 1681 GGGGGUAUU| CGU-AUUUAC -AUG--UC-A GA-G(GU-GG AA---)UUCU -UGGA-U-UU 1741 U-GGA-AAG- A-CGA-A-CU AAUGC(-GAA A)GC|AUCUA CCAA|A-GAU GUUUUCAUUG 1801 AU|CA-AGAA CGAAA----- GUUUGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUAA -ACC-AUAAA CUAUGCCGAC |UU|-gcga- uuguuuu-g- uguc--(--- 1921 -auuuaau-- -------)-- -gag-cagag cagcagcac- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GCGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCACAG|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGUG--- --|gugu--c uau-g(gcga ---------- 2401 ---------- ---------- -----)caua g--g-u-ga| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---uG-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGUGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGAUU---- ---------- ----(----) [uc-aacgag 2761 -uug------ -|uuuauguu gcug(---uu uu)ugg-ca- aua------- |-uuuccu-u 2821 gucc(--guu a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------GGUC 2881 AUC-GUGAUG GGGCUAGAUU UU(UGCAAUU U)UUAA-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGUUCCGGUG AGA-CCUUUG GAu-cugcu- ga-u-gug-g 3061 g-gc------ ---------- ---------- --(gcaa--- -)-------- ---------- 3121 ---------- ------g-cc -uug---uug uu-gg----- cgg-agaa|a uugagcaaac 3181 cuuaacgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.sp.BS1 3273 bp RNA RNA 24-JAN-191 DEFINITION Thraustochytriidae sp. BS1. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytriidae sp. BS1. ORGANISM Thraustochytriidae sp. BS1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF257314 LOCUS AF257314 1619 bp DNA PLN 30-APR-2000 DEFINITION Thraustochytriidae sp. BS1 18S ribosomal RNA gene, partial sequence. ACCESSION AF257314 VERSION AF257314.1 GI:7671243 KEYWORDS . SOURCE Thraustochytriidae sp. BS1. ORGANISM Thraustochytriidae sp. BS1 Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae. REFERENCE 1 (bases 1 to 1619) AUTHORS Mo,C., Jacob,D. and Baruch,R. TITLE Development of a PCR strategy for thraustochytrids identification based on the sequence of 18S ribosomal RNA gene JOURNAL Unpublished REFERENCE 2 (bases 1 to 1619) AUTHORS Mo,C., Claudette,R. and Baruch,R. TITLE Thraustochytrids isolated from Botryllus schlosseri cell culture and its molecular phylogenetic location based on 18S ribosomal RNA gene sequence JOURNAL Unpublished REFERENCE 3 (bases 1 to 1619) AUTHORS Mo,C. TITLE Direct Submission JOURNAL Submitted (18-APR-2000) Minerva Center for Marine Invertebrate, Immunology and Developmental Biology, National Institute of Oceanography, Tel-Shikmona, Haifa 31080, Israel FEATURES Location/Qualifiers source 1..1619 /organism="Thraustochytriidae sp. BS1" /db_xref="taxon:122205" rRNA <1..>1619 /product="18S ribosomal RNA" BASE COUNT 445 a 310 c 405 g 455 t 4 others BASE COUNT 445 a 310 c 405 g 455 t 1658 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~A AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcaa-- uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUcagaa 181 au-aauuuau ucaguag<-- ugu----uu- u-c>A-UUGG -AUACCUGCG G(U-AAUU)C 241 UGGAAUUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaacugu uc-aa|guuu cugc|CCCAU 601 CAAGUUUA-G UUGGUAGG-( GUAUUGG)-C CU-ACCAA|G C-UUA-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-UAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGAAAUG-CA GA-GCCA(-a uu-)UGGUUU -U-GC-UAUU UCAAUGAGA| GAAAU(C-UA 961 AAAA)CCU|C -AACGA-GG- AUC>AACUGG AG|GGCAA-G CC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAGAAGCGN A|UACUAA-C GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAAU-U- 1681 GGGGGUAUU| CGU-AUUUAG -UUG--UC-A GA-G(GU-GA AA---)U-C- -UGGA-U-U- 1741 A-CGA-AAG- A-CGA-A-CA ACUGC(-GAA G)GC|AUUAU NNA-|--GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAAcgaaa GUCAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACA-GUAAA CUAUGCCGAC |UU|-gcaa- uuguccc-a- uguu--(--- 1921 -gcuuuau-- -------)-- -gac-ggggg cagcggcac- -AUGA(CAAC A)UCA--AAG 1981 UCUUUUGGGC |UU|CCCCCC -GGAGUAC-C CCC(GCAA)- UGC-C-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- UGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCAAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CCUAUUAA AU-AGUA--- --|cugg--g uau-g(guaa ---------- 2401 ---------- ---------- -----)caua c--c-u-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gA-CUUC 2581 UUAGAGG]-- -|-------- -----GACAG UUC-GG(--- ---------- ----guuua- 2641 )CCGGAUGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGAGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------a ccac(---au uu)gug-gu- ---------- |-ucuccu-u 2821 uugc(--gga a-)gcaac-g ggugaucuuu uaaac]---- ---------- ------GCUU 2881 AUC-GUGAUG GGGCUAGAGC UU(UGCAAUU A)UUGC-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.sp.BS2 3273 bp RNA RNA 24-JAN-191 DEFINITION Thraustochytriidae sp. BS2. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytriidae sp. BS2. ORGANISM Thraustochytriidae sp. BS2. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF257315 LOCUS AF257315 1618 bp DNA PLN 30-APR-2000 DEFINITION Thraustochytriidae sp. BS2 18S ribosomal RNA gene, partial sequence. ACCESSION AF257315 VERSION AF257315.1 GI:7671244 KEYWORDS . SOURCE Thraustochytriidae sp. BS2. ORGANISM Thraustochytriidae sp. BS2 Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae. REFERENCE 1 (bases 1 to 1618) AUTHORS Mo,C., Jacob,D. and Baruch,R. TITLE Development of a PCR strategy for thraustochytrids identification based on the sequence of 18S ribosomal RNA gene JOURNAL Unpublished REFERENCE 2 (bases 1 to 1618) AUTHORS Mo,C., Claudette,R. and Baruch,R. TITLE Thraustochytrids isolated from Botryllus schlosseri cell culture and its molecular phylogenetic location based on 18S ribosomal RNA gene sequence JOURNAL Unpublished REFERENCE 3 (bases 1 to 1618) AUTHORS Mo,C. TITLE Direct Submission JOURNAL Submitted (18-APR-2000) Minerva Center for Marine Invertebrate, Immunology and Developmental Biology, National Institute of Oceanography, Tel-Shikmona, Haifa 31080, Israel FEATURES Location/Qualifiers source 1..1618 /organism="Thraustochytriidae sp. BS2" /db_xref="taxon:122206" rRNA <1..>1618 /product="18S ribosomal RNA" BASE COUNT 446 a 296 c 411 g 457 t 8 others BASE COUNT 446 a 296 c 411 g 457 t 1663 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~A AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcaa-- uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG GACGGCUCAU UAUAUcagaa 181 au-aauuuau ucaguag<-- ugu----uu- u-c>A-UUGG -AUACCUGCG G(U-AAUU)C 241 UGGAAUUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaacugu uc-aa|guuu cugc|CCCAU 601 CAAGUUUA-G UUGGUAGG-( GUAUUGG)-C CU-ACCAA|G C-UUA-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-UAAG-)GA A-GGCAGCA| GGC--GC-GC AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACGAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AGAAAUG-CA GA-GCCA(-a uu-)UGGUUU -U-GC-UAUU UCAAUGAGA| GAAAU(C-UA 961 AAAA)CCU|C -AACGA-GG- AUC>AACUGG AG|GGCAA-G CC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAGAAGCGU A|UACUAACC GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAAU-UG 1681 GGGGGUAUU| CGU-AUUUAG -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-CGA-AAG- A-CGA-A-CA ACUGC(-GAA G)GC|AUUUA UCAA|A-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GNAGU|CUUA -ACA-GNAAA CUAUGCCGAC |UU|-gcaa- uuggccc-a- uguu--(--- 1921 -guuuau--- -------)-- -gac-ggggg cagcggcac- -AUGA(-NAA A)UCA--AAG 1981 UC-UUUGGGG |-U|UCCGGG -GGGAGAU-G GNC(NNAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- UGGAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCAAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CCUAUUAA AU-AGUA--- --|cugg--g uau-g(guaa ---------- 2401 ---------- ---------- -----)caua c--c-u-ag| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gA-CUUC 2581 UUAGAGG]-- -|-------- -----GACAG UUC-GG(--- ---------- ----guuua- 2641 )CCGGAUGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGAGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------a ccac(---au uu)gug-gu- ---------- |-ucuccu-u 2821 uugc(--gga a-)gcaac-g gguaaucuuu uaaac]---- ---------- ------GCUU 2881 AUC-GUGAUG GGGCUAGAGC UU(UGCAAUU A)UUGC-UCU CCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.sp.7-5 3273 bp RNA RNA 24-JAN-191 DEFINITION Thraustochytriidae sp. 7-5. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytriidae sp. 7-5. ORGANISM Thraustochytriidae sp. 7-5. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF257316 LOCUS AF257316 1635 bp DNA PLN 30-APR-2000 DEFINITION Thraustochytriidae sp. 7-5 18S ribosomal RNA gene, partial sequence. ACCESSION AF257316 VERSION AF257316.1 GI:7671245 KEYWORDS . SOURCE Thraustochytriidae sp. 7-5. ORGANISM Thraustochytriidae sp. 7-5 Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae. REFERENCE 1 (bases 1 to 1635) AUTHORS Mo,C., Jacob,D. and Baruch,R. TITLE Development of a PCR strategy for thraustochytrids identification based on the sequence of 18S ribosomal RNA gene JOURNAL Unpublished REFERENCE 2 (bases 1 to 1635) AUTHORS Mo,C. TITLE Direct Submission JOURNAL Submitted (18-APR-2000) Minerva Center for Marine Invertebrate, Immunology and Developmental Biology, National Institute of Oceanography, Tel-Shikmona, Haifa 31080, Israel FEATURES Location/Qualifiers source 1..1635 /organism="Thraustochytriidae sp. 7-5" /db_xref="taxon:122207" rRNA <1..>1635 /product="18S ribosomal RNA" BASE COUNT 446 a 309 c 417 g 457 t 6 others BASE COUNT 446 a 309 c 417 g 457 t 1644 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~A AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcaa-c uu-------- 121 ---au-a-cu gcga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -uacuu-uu- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-A(- aca)CGGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUA-CG GG-GCC-(-u uu-)-GGUCU -U-GU-AAUU GGAAUGAGU| ACAAU(C-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGN-N- 1681 GGGGGUAUU| -------UAA -UUG--CA-U AA-G(G--GA AA---)U-C- -UGGA-U-U- 1741 A--GA-AAG- A-CGA-A-CU AUCGC(UGAA A)GC|A-UUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUA-GGGGAU CGAA--GAUU G(A-UUAGCA UUAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGNC-AC |UA|-ggga- uuggcga-u- cguu--(auu 1921 uauncguacc ucguca-)-- -gac-cucgu cagcaccuu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GNU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCNC CCAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCACCA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|ugcg--u uuu-c(ucac ---------- 2401 ---------- ---------- -----)gaaa g--c-g-ua| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gA-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGAAU---- ---------- ----(----) [uc-aacgag 2761 -cuu------ -|-------- ---------- ---------- ---------- |-uaaccu-u 2821 ggcu(--gag a-)agccu-g gguaaucuuu ugaac]---- ---------- ------GUUC 2881 AUCGGUGAUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Thr.sp.8-7 3273 bp RNA RNA 24-JAN-191 DEFINITION Thraustochytriidae sp. 8-7. ACCESSION No information KEYWORDS No information. SOURCE Thraustochytriidae sp. 8-7. ORGANISM Thraustochytriidae sp. 8-7. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF257317 LOCUS AF257317 1657 bp DNA PLN 30-APR-2000 DEFINITION Thraustochytriidae sp. 8-7 18S ribosomal RNA gene, partial sequence. ACCESSION AF257317 VERSION AF257317.1 GI:7671246 KEYWORDS . SOURCE Thraustochytriidae sp. 8-7. ORGANISM Thraustochytriidae sp. 8-7 Eukaryota; stramenopiles; Labyrinthulida; Thraustochytriidae. REFERENCE 1 (bases 1 to 1657) AUTHORS Mo,C., Jacob,D. and Baruch,R. TITLE Development of a PCR strategy for thraustochytrids identification based on the sequence of 18S ribosomal RNA gene JOURNAL Unpublished REFERENCE 2 (bases 1 to 1657) AUTHORS Mo,C. TITLE Direct Submission JOURNAL Submitted (18-APR-2000) Minerva Center for Marine Invertebrate, Immunology and Developmental Biology, National Institute of Oceanography, Tel-Shikmona, Haifa 31080, Israel FEATURES Location/Qualifiers source 1..1657 /organism="Thraustochytriidae sp. 8-7" /db_xref="taxon:122208" rRNA <1..>1657 /product="18S ribosomal RNA" BASE COUNT 440 a 324 c 421 g 457 t 15 others BASE COUNT 440 a 324 c 421 g 457 t 1631 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~A AA|GAUUAAG 61 CCAUGCAUGU CU-AGGU|-- -----|---- ---(----)[ aunngcaac- uu-------- 121 ---au-a-cu gcga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -uacuu-uu- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gaaucau uc-aa|guuu cugc|CCUAU 601 CAGCUGUC-G AUGGUAGGG( GUAUUGG)CC CU-ACCAU|G GGCGU-UAAC |GGGUGACGG 661 A|GAA-U(UA GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GCCGU AAAUUACCC- AAUCCU-A(- aca)CGGGG- 781 A-GGU|n|GG UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CG GGGGCC-(-u uug)-GGUCU -U-GUnAUUU GGAAUGAGU| ACAAU(C-UA 961 AnUn)CCU|U -AACGA-GNG AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCCC 1021 |GGGGNAA)U UCCA-G-|CU CCAAUAGCGG A|UAUUAAnG GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CGU-AUUUAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGA-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(ACUUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACCCAUAAA CUAUGCCGAC |UC|Aggga- uuggcga-u- cguu--(--- 1921 auuuauac-- -------)-- -gac-cucgu cagcaccuu- -AUGA(-CAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGC -GGAGUACnn CUC(GCAA)G GCUCGCACAC ACUCCCnCGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAAA CCUCAG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUA--- --|ugcg--u uuu-c(ucac c--------- 2401 ---------- ---------- -----)gaaa g--c-g-ua| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gA-CUUC 2581 UUAGAGG]-- -|-------- -----GACAU UUC-GG(--- ---------- ----uuuua- 2641 )CCGGAAGGA AGUUUGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGAAU---- ---------- ----(----) [uc-aacgag 2761 -cuu------ -|-------- ---------- ---------- ---------- |-uaaccu-u 2821 ggcu(--gag a-)agccu-g gguaaucuuu ugaac]---- ---------- ------GCUC 2881 AUC-GUGAUG GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UCAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUG~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Oomyce 3273 bp RNA RNA 13-JAN-1999 DEFINITION Oomycetes. ACCESSION No information KEYWORDS No information. SOURCE Oomycetes. ORGANISM Oomycetes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Lag.gigant 3273 bp RNA RNA 24-JAN-191 DEFINITION Lagenidium giganteum. ACCESSION No information KEYWORDS No information. SOURCE Lagenidium giganteum. ORGANISM Lagenidium giganteum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M54939 X54266 LOCUS LAGRG16SL 1822 bp DNA PLN 29-JAN-1991 DEFINITION Lagenidium giganteum ribosomal RNA small subunit (16S-like) gene. ACCESSION M54939 NID g168280 KEYWORDS ribosomal RNA small subunit. SOURCE L.giganteum (strain ATCC 52675) DNA. ORGANISM Lagenidium giganteum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Oomycetes; Lagenidales; Lagenidiaceae; Lagenidium. REFERENCE 1 (bases 1 to 1822) AUTHORS Forster,H., Coffey,M.D., Elwood,H. and Sogin,M.L. TITLE Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution JOURNAL Mycologia 82, 306-312 (1990) BASE COUNT 486 a 338 c 469 g 529 t 1451 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaacu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac ucgauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucga uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUGCUC UG-GCUC(-u uc-)GAGUCG -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 aauuuuaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcu-- --|cgcu--u aca-a(uuuu ---------- 2401 ---------- ---------- -----)uugu a--g-g-uu| uuga------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUGGGU(--- ---------- ----aaucaa 2641 )ACCAAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ----(----- --)------- ---------- |acaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------GCGC 2881 AUC-GUGCUA GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-uguga- ac-u-cgu-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-cg -aau----ga gu-uu----- gug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Phy.megasp 3273 bp RNA RNA 24-JAN-191 DEFINITION Phytophthora megasperma subsp. same as GB - M54938. ACCESSION No information KEYWORDS No information. SOURCE Phytophthora megasperma subsp. same as GB - M54938. ORGANISM Phytophthora megasperma. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X54265 ID PME16S standard; DNA; FUN; 1827 BP. XX AC X54265; XX DT 04-OCT-1990 (annotation) XX DE Phytophtora megasperma 16S ribosomal RNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Phytophtora megasperma OC Eukaryota; Planta; Mycophyta; Mastigomycotina; Oomycetes. XX RN [1] (bases 1-1827) RA Foerster H., Coffey M.D., Elwood H., Sogin M.L.; RT "Sequence analysis of the small subunit ribosomal RNAs of three RT zoosporic fungi and implications for fungal evolution"; RL Mycologia 82:306-312(1990). XX CC *source: strain=glycinea. XX FH Key From To Description FH FT RRNA 1 1827 16S rRNA XX XX SQ Sequence 1827 BP; 476 A; 346 C; 479 G; 526 T; 0 other; BASE COUNT 476 a 346 c 479 g 526 t 1446 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacacuu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac ucgauag<-- -uaccu-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucga uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUGCUC UG-GCUC(-u uc-)GAGUCG -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 C-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 acuuuaaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|cgcu--u acc-a(uuuu ---------- 2401 ---------- ---------- -----)uggu a--g-g-uu| ugug------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUGGGU(--- ---------- ----aaucaa 2641 )ACCAAAGGA AGUUGGAGGC AAUAAC-GGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |acaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuug ugaau]---- ---------- ------GCGC 2881 AUC-GUGCUA GGGAUAGACU GU(UGCAAUU U)UCAG-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gau-cguga- gu-c-cgu-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-cg -agu----gg au-ug----- aug-agaa|c uuuuuuaaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUA~~~~ ~~~~~~~~|| ||| // LOCUS Pyt.insidi 3273 bp RNA RNA 24-JAN-191 DEFINITION Pythium insidiosum. ACCESSION No information KEYWORDS No information. SOURCE Pythium insidiosum. ORGANISM Pythium insidiosum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF289981 LOCUS AF289981 1790 bp DNA PLN 17-AUG-2000 DEFINITION Pythium insidiosum 18S ribosomal RNA gene, partial sequence. ACCESSION AF289981 VERSION AF289981.1 GI:9837548 KEYWORDS . SOURCE Pythium insidiosum. ORGANISM Pythium insidiosum Eukaryota; stramenopiles; Oomycetes; Pythiales; Pythiaceae; Pythium. REFERENCE 1 (bases 1 to 1790) AUTHORS Chesebro,J.E., Herr,R.A. and Mendoza,L. TITLE Pythium insidiosum 18S ssu rDNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 1790) AUTHORS Chesebro,J.E., Herr,R.A. and Mendoza,L. TITLE Direct Submission JOURNAL Submitted (25-JUL-2000) Medical Technology Program, Michigan State University, 322 N. Kedzie Lab., East Lansing, MI 48824-1031, USA FEATURES Location/Qualifiers source 1..1790 /organism="Pythium insidiosum" /strain="ATCC 58643" /db_xref="taxon:114742" /db_xref="ATCC:58643" rRNA <1..>1790 /product="18S ribosomal RNA" BASE COUNT 474 a 336 c 464 g 516 t BASE COUNT 474 a 336 c 464 g 516 t 1483 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~G UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaacu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac ucgauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucga uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUGCUC UG-GCUC(-u uc-)GAGUCG -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUCCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 C-UGG-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--- 1921 -uuuuaaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|cgcu--u aca-a(uuuu ---------- 2401 ---------- ---------- -----)uugu a--g-g-ua| gug------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ga-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUGGGU(--- ---------- ----aaucaa 2641 )ACCAAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ---------- ---------- ---------- |acaaccu-u 2821 guuc(--gau a-)ggacu-g gguaaucuug ugaau]---- ---------- ------GCGC 2881 AUC-GUGCUA GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aga-aaucgg gac-cguga- au-c-cgu-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-cg -aau----gg ac-uu----- aug-ggaa|c uuuuucuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUUGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pyt.monosp 3273 bp RNA RNA 24-JAN-191 DEFINITION Pythium monospermum. ACCESSION No information KEYWORDS No information. SOURCE Pythium monospermum. ORGANISM Pythium monospermum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238653 LOCUS PMO238653 1795 bp DNA PLN 01-JUL-1999 DEFINITION Pythium monospermum 18S rRNA gene, partial. ACCESSION AJ238653 VERSION AJ238653.1 GI:5327224 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Pythium monospermum. ORGANISM Pythium monospermum Eukaryota; stramenopiles; Oomycetes; Peronosporales; Pythiaceae; Pythium. REFERENCE 1 (bases 1 to 1795) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1795) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1795 /organism="Pythium monospermum" /db_xref="taxon:92964" /country="United Kingdom:Berkshire" rRNA <1..>1795 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1795 /gene="18S rRNA" BASE COUNT 467 a 334 c 466 g 528 t BASE COUNT 467 a 334 c 466 g 528 t 1478 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~UCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac ucgauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGUUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucga uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUGCUC UG-GCUC(-u uc-)GAGUCG -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 CAUC)CCU|U -AACGA-GG- AUC>AAUUGG AC|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 C-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--- 1921 uauuuuaaa- -------)-- -uga-ccuug ucagcaccg- -UAUG(-AGA A)AUC--AAA 1981 GU-CUUUGGG |UU|CCGGGG -GGAGUAU-G UGC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|CCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA CU-AGUuc-- --|cgcu--u aca-a(uuuu ---------- 2401 ---------- ---------- -----)uugu a--g-g-uu| uuugg----- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUGGGU(--- ---------- ----aaucaa 2641 )ACCAAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |acaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------GCGC 2881 AUC-GUGCUA GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-uguga- gc-c-ugu-u 3061 u-gc------ ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ------g-cg -agu----gg gu-uu----- gug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Phy.undula 3273 bp RNA RNA 24-JAN-191 DEFINITION Phytophthora undulata. ACCESSION No information KEYWORDS No information. SOURCE Phytophthora undulata. ORGANISM Phytophthora undulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238654 LOCUS PUN238654 1788 bp DNA PLN 01-JUL-1999 DEFINITION Phytophthora undulata 18S rRNA gene, partial. ACCESSION AJ238654 VERSION AJ238654.1 GI:5327235 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Phytophthora undulata. ORGANISM Phytophthora undulata Eukaryota; stramenopiles; Oomycetes; Peronosporales; Pythiaceae; Phytophthora. REFERENCE 1 (bases 1 to 1788) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1788) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1788 /organism="Phytophthora undulata" /db_xref="taxon:92965" /country="United Kingdom:Berkshire" rRNA <1..>1788 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1788 /gene="18S rRNA" BASE COUNT 476 a 333 c 460 g 519 t BASE COUNT 476 a 333 c 460 g 519 t 1485 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~UA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaacu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac ucgauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucga uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUGCUC UG-GCUC(-u uc-)GAGUCG -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 C-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--- 1921 -uuucaaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G UUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|cgcu--u aca-a(uuuu ---------- 2401 ---------- ---------- -----)uugu a--g-g-ua| gug------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUGGGU(--- ---------- ----aaucaa 2641 )ACCAAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-agcgag 2761 -uau------ -|-------- ---------- ---------- ---------- |acaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuug ugaau]---- ---------- ------GCGC 2881 AUC-GUGCUA GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aga-aaucgg gac-cguga- au-c-ugu-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-cg -agu----gg ac-uu----- aug-ggaa|c uuuuucuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AA~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Apo.brachy 3273 bp RNA RNA 24-JAN-191 DEFINITION Apodachlya brachynema. ACCESSION No information KEYWORDS No information. SOURCE Apodachlya brachynema. ORGANISM Apodachlya brachynema. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238663 LOCUS ABR238663 1795 bp DNA PLN 30-JUN-1999 DEFINITION Apodachlya brachynema 18S rRNA gene, partial. ACCESSION AJ238663 VERSION AJ238663.1 GI:5326563 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Apodachlya brachynema. ORGANISM Apodachlya brachynema Eukaryota; stramenopiles; Oomycetes; Leptomitales; Apodachlya. REFERENCE 1 (bases 1 to 1795) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1795) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1795 /organism="Apodachlya brachynema" /isolate="5001a" /db_xref="taxon:92981" /country="United Kingdom:Blelham Tarn" rRNA <1..>1795 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1795 /gene="18S rRNA" BASE COUNT 487 a 323 c 457 g 528 t BASE COUNT 487 a 323 c 457 g 528 t 1478 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~UCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uu-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -GCG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 aauuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|cgcu--u aca-a(uuuu ---------- 2401 ---------- ---------- -----)uugu a--g-g-uu| uuugg----- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUGGGU(--- ---------- ----aaucaa 2641 )ACCAAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCGU---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |acaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-uguug- au-a-ugc-u 3061 u-uc------ ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ------g-ag -agc----aa au-cg----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AA~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sap.ferax 3273 bp RNA RNA 24-JAN-191 DEFINITION Saprolegnia ferax. ACCESSION No information KEYWORDS No information. SOURCE Saprolegnia ferax. ORGANISM Saprolegnia ferax. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238655 LOCUS SFE238655 1781 bp DNA PLN 01-JUL-1999 DEFINITION Saprolegnia ferax 18S rRNA gene, partial. ACCESSION AJ238655 VERSION AJ238655.1 GI:5327236 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Saprolegnia ferax. ORGANISM Saprolegnia ferax Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Saprolegnia. REFERENCE 1 (bases 1 to 1781) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1781) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1781 /organism="Saprolegnia ferax" /isolate="2004b" /db_xref="taxon:4770" /country="United Kingdom:Widermere" rRNA <1..>1781 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1781 /gene="18S rRNA" BASE COUNT 475 a 331 c 459 g 516 t BASE COUNT 475 a 331 c 459 g 516 t 1492 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~AU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uuggcag<-- -uaccu-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aagucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-u uu-)AAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUACUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aag-uauugg gac-uguga- au-u-ugu-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-ca -uuc----aa gu-uu----- gug-ggaa|c uuuccuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUACG(UG AA)CCUGCGG 3241 AAGGAUCA~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pyt.cymosa 3273 bp RNA RNA 24-JAN-191 DEFINITION Pythiopsis cymosa. ACCESSION No information KEYWORDS No information. SOURCE Pythiopsis cymosa. ORGANISM Pythiopsis cymosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238657 LOCUS PCY238657 1775 bp DNA PLN 01-JUL-1999 DEFINITION Pythiopsis cymosa 18S rRNA gene, partial. ACCESSION AJ238657 VERSION AJ238657.1 GI:5327222 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Pythiopsis cymosa. ORGANISM Pythiopsis cymosa Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Pythiopsis. REFERENCE 1 (bases 1 to 1775) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1775) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1775 /organism="Pythiopsis cymosa" /isolate="3601j" /db_xref="taxon:92969" /country="United Kingdom:SU 738 718" rRNA <1..>1775 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1775 /gene="18S rRNA" BASE COUNT 480 a 323 c 456 g 516 t BASE COUNT 480 a 323 c 456 g 516 t 1498 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~UUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aagucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uu-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguug- au-u-cgc-c 3061 c-ac------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-ug -agc----aa au-ug----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAU~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Apl.terres 3273 bp RNA RNA 24-JAN-191 DEFINITION Aplanopsis terrestris. ACCESSION No information KEYWORDS No information. SOURCE Aplanopsis terrestris. ORGANISM Aplanopsis terrestris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238658 LOCUS ATE238658 1780 bp DNA PLN 30-JUN-1999 DEFINITION Aplanopsis terrestris 18S rRNA gene, partial. ACCESSION AJ238658 VERSION AJ238658.1 GI:5326935 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Aplanopsis terrestris. ORGANISM Aplanopsis terrestris Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Aplanopsis. REFERENCE 1 (bases 1 to 1780) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1780) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1780 /organism="Aplanopsis terrestris" /isolate="3102b" /db_xref="taxon:92972" /country="United Kingdom:SU 737 716" rRNA <1..>1780 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1780 /gene="18S rRNA" BASE COUNT 482 a 326 c 454 g 518 t BASE COUNT 482 a 326 c 454 g 518 t 1493 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~AUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aagucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uu-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 CAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AA|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguug- au-u-cgc-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-ug -agc----aa au-ug----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGG~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.caudat 3273 bp RNA RNA 24-JAN-191 DEFINITION Leptolegnia caudata. ACCESSION No information KEYWORDS No information. SOURCE Leptolegnia caudata. ORGANISM Leptolegnia caudata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238659 LOCUS LCA238659 1752 bp DNA PLN 01-JUL-1999 DEFINITION Leptolegnia caudata 18S rRNA gene, partial. ACCESSION AJ238659 VERSION AJ238659.1 GI:5327100 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Leptolegnia caudata. ORGANISM Leptolegnia caudata Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Leptolegnia. REFERENCE 1 (bases 1 to 1752) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1752) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1752 /organism="Leptolegnia caudata" /isolate="3501b" /db_xref="taxon:92976" /country="India:Naini Tal" rRNA <1..>1752 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1752 /gene="18S rRNA" BASE COUNT 475 a 316 c 449 g 512 t BASE COUNT 475 a 316 c 449 g 512 t 1521 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~UUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaaau uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UGGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uc-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguug- au-u-cgu-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-ug -agu----ga au-ug----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGC~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.chap.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Leptolegnia chapmanii. ACCESSION No information KEYWORDS No information. SOURCE Leptolegnia chapmanii. ORGANISM Leptolegnia chapmanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238660 LOCUS LCH238660 1778 bp DNA PLN 01-JUL-1999 DEFINITION Leptolegnia chapmanii 18S rRNA gene, partial. ACCESSION AJ238660 VERSION AJ238660.1 GI:5327101 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Leptolegnia chapmanii. ORGANISM Leptolegnia chapmanii Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Leptolegnia. REFERENCE 1 (bases 1 to 1778) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1778) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1778 /organism="Leptolegnia chapmanii" /isolate="3506a" /db_xref="taxon:92984" /country="USA:Florida" rRNA <1..>1778 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1778 /gene="18S rRNA" BASE COUNT 482 a 322 c 458 g 516 t BASE COUNT 482 a 322 c 458 g 516 t 1495 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaagu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugacag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aagucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uc-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguug- ac-u-cgu-u 3061 u-gc------ ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ------g-ug -agu----ga gu-ug----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.chap.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Leptolegnia chapmanii. ACCESSION No information KEYWORDS No information. SOURCE Leptolegnia chapmanii. ORGANISM Leptolegnia chapmanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238661 LOCUS LCH238661 1787 bp DNA PLN 01-JUL-1999 DEFINITION Leptolegnia chapmanii 18S rRNA gene, partial. ACCESSION AJ238661 VERSION AJ238661.1 GI:5327102 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Leptolegnia chapmanii. ORGANISM Leptolegnia chapmanii Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Leptolegnia. REFERENCE 1 (bases 1 to 1787) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1787) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1787 /organism="Leptolegnia chapmanii" /isolate="3506b" /db_xref="taxon:92984" /country="Argentina" rRNA <1..>1787 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1787 /gene="18S rRNA" BASE COUNT 488 a 321 c 461 g 517 t BASE COUNT 488 a 321 c 461 g 517 t 1486 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAU GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaagu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugacag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aagucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uc-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUuc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUGUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gaa a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguug- ac-u-cgu-u 3061 u-gc------ ---------- ---------- --(uuuauu- -)-------- ---------- 3121 ---------- ------g-ug -agu----ga gu-ug----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---AA~~~~~ ~~~~~~~~|| ||| // LOCUS Leptol.sp. 3273 bp RNA RNA 24-JAN-191 DEFINITION Leptolegnia sp.. ACCESSION No information KEYWORDS No information. SOURCE Leptolegnia sp. ORGANISM Leptolegnia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238662 LOCUS LSP238662 1747 bp DNA PLN 01-JUL-1999 DEFINITION Leptolegnia sp. 18S rRNA gene, partial. ACCESSION AJ238662 VERSION AJ238662.1 GI:5327103 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Leptolegnia sp. ORGANISM Leptolegnia sp. Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Leptolegnia. REFERENCE 1 (bases 1 to 1747) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1747) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1747 /organism="Leptolegnia sp." /db_xref="taxon:92985" /country="United Kingdom:SU 623 622" rRNA <1..>1747 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1747 /gene="18S rRNA" BASE COUNT 472 a 314 c 453 g 507 t 1 others BASE COUNT 472 a 314 c 453 g 507 t 1527 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~GU CU-AAGU|-- -----|---- ---(----)[ auaaacaacu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugauag<-- -uaccu-ua- u-a>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGUUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---aaaucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uu-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUcc-- --|ugcu--u acc-a(aug- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCWCCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguug- au-u-cgc-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-ug -agc----aa au-ug----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAG~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ach.apicul 3273 bp RNA RNA 24-JAN-191 DEFINITION Achlya apiculata. ACCESSION No information KEYWORDS No information. SOURCE Achlya apiculata. ORGANISM Achlya apiculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AJ238656 LOCUS AAP238656 1774 bp DNA PLN 30-JUN-1999 DEFINITION Achlya apiculata 18S rRNA gene, partial. ACCESSION AJ238656 VERSION AJ238656.1 GI:5326524 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Achlya apiculata. ORGANISM Achlya apiculata Eukaryota; stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Achlya. REFERENCE 1 (bases 1 to 1774) AUTHORS Dick,M.W., Vick,M.C., Gibbings,J.G., Hedderson,T.A. and Lopez Lastra,C.C. TITLE 18s rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1774) AUTHORS Hedderson,T.A.J. TITLE Direct Submission JOURNAL Submitted (26-APR-1999) Hedderson T.A.J., Department of Botany, University of Reading, School of Plant Sciences, Whiteknights, Berks. RG6 6AS, UNITED KINGDOM FEATURES Location/Qualifiers source 1..1774 /organism="Achlya apiculata" /db_xref="taxon:92966" /country="United Kingdom" rRNA <1..>1774 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..1774 /gene="18S rRNA" BASE COUNT 475 a 326 c 462 g 511 t BASE COUNT 475 a 326 c 462 g 511 t 1499 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~GUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uggaugg<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucca uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uc-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--u 1921 auuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUuc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gac a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU U)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguug- ac-u-auc-c 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-ug -ggc----aa au-cg----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUACG(UG AA)CCUGCGG 3241 AAGGA-CA~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ach.bisexu 3273 bp RNA RNA 24-JAN-191 DEFINITION Achlya bisexualis. ACCESSION No information KEYWORDS No information. SOURCE Achlya bisexualis. ORGANISM Achlya bisexualis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M32705 LOCUS ACKAC 1809 bp ds-DNA PLN 15-JUN-1990 DEFINITION A.bisexualis small subunit rRNA gene. ACCESSION M32705 J02951 KEYWORDS ribosomal RNA small subunit. SOURCE A.bisexualis. ORGANISM Achlya bisexualis Eukaryota; Fungi; Eumycota; Mastigomycotina; Oomycetes; Saprolegniales; Saprolegniaceae. REFERENCE 1 (bases 1 to 1809) AUTHORS Gunderson,J.H., Elwood,H., Ingold,A., Kindle,K. and Sogin,M.L. TITLE Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84, 5823-5827 (1987) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1809 /note="small subunit ribosomal RNA" BASE COUNT 487 a 328 c 460 g 534 t ORIGIN BASE COUNT 487 a 328 c 460 g 534 t 1464 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacaauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-agucuac uugauag<-- -uaccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---acaucaa uu-ga|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( AUAUGGG)-C CU-ACCAU|G G-CGU-UAAC |GGGUAACGG 661 G|GAA-U(UA GG)GUUUGAU U-CCG|GAGA GGGAGCC(UU AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-UC GG-GCUU(-u uu-)AAGUCU -G-AC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AACGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUUCA -ACG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-CG 1741 U-UGA-AAG- A-UGA-G-CU UAGGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UC|-ggga- uuggcag-u- cguu--(--- 1921 uuuuugaau- -------)-- -gac-cuugu cagcaccgu- -AUGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CGUGCUAA AU-AGUuc-- --|ugcu--u acc-a(auu- ---------- 2401 ---------- ---------- -----)uggu a--g-g-ua| ag-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---GA-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gacua- 2641 )ACUGAAGGA AGUUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUACGC---- ---------- ----(----) [uc-aacgag 2761 -uau------ -|-------- ----(----- --)------- ---------- |auaaccu-u 2821 gauc(--gau a-)ggucu-g gguaaucuuu ugaau]---- ---------- ------ACGU 2881 AUC-GUGCUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAcucggug aaa-aauugg gac-cguua- au-u-cuc-u 3061 u-gc------ ---------- ---------- --(uucauu- -)-------- ---------- 3121 ---------- ------g-ug -agu----ca gu-ug----- aug-ggaa|c uuuuuuuaac 3181 cucgccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUA~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Pelago 3273 bp RNA RNA 13-JAN-1999 DEFINITION Pelagophyceae. ACCESSION No information KEYWORDS No information. SOURCE Pelagophyceae. ORGANISM Pelagophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Aur.anop.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureococcus anophagefferens. ACCESSION No information KEYWORDS No information. SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U40257 LOCUS AAU40257 1813 bp DNA PLN 10-DEC-1995 DEFINITION Aureococcus anophagefferens 18S ribosomal RNA gene sequence. ACCESSION U40257 KEYWORDS . SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae; Aureococcus. REFERENCE 1 (bases 1 to 1813) AUTHORS DeYoe,H.R., Chan,A.M. and Suttle,C.A. TITLE Phylogeny of Aureococcus anophagefferens and a morphologically similar bloom-forming alga from Texas as determined by 18S ribosomal RNA sequence analysis JOURNAL J. Phycol. 31 (3), 413-418 (1995) REFERENCE 2 (bases 1 to 1813) AUTHORS DeYoe,H.R. TITLE Direct Submission JOURNAL Submitted (06-NOV-1995) Hudson R. DeYoe, University of Texas Marine Science Institute, P.O. Box 1267, Port Aransas, TX 78373, USA COMMENT NCBI gi: 1110499 FEATURES Location/Qualifiers source 1..1813 /strain="Pt-1" /organism="Aureococcus anophagefferens" /note="Hargraves et Sieburth" rRNA 1..1813 /product="18S ribosomal RNA" BASE COUNT 454 a 384 c 497 g 460 t 18 others ORIGIN BASE COUNT 454 a 384 c 497 g 460 t 1478 others ORIGIN 1 |~~~~~~AAC CYGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu gugr-a]--- --------|- --ACU|-GCG AAUGKCUCAU UAUAUcaguu 181 au-wguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUY)C 241 UAGAGCYAA- UACAYG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau yc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CY-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-U UAC)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-RAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 --uguucu-- -------)-- -cac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUB(GCAA)G GYU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCug-- --|uggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugagc]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AMCGC-GAG( UCAUCAG)CU CGCAU-UGAU YACGU-CCCU GCCCUU|UGU WCACACCGCC 3001 CGUCGCWCCU ACCGAUUGAA UGGUucggug aaa-ccuccg gac-ugggg- uu-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ua-cc----- ucg-ggaa|g uurguuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGGAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Aur.anop.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureococcus anophagefferens. ACCESSION No information KEYWORDS No information. SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117776 LOCUS AF117776 1814 bp DNA PLN 16-JUN-1999 DEFINITION Aureococcus anophagefferens strain CCMP1706 18S ribosomal RNA gene, partial sequence. ACCESSION AF117776 NID g5070281 VERSION AF117776.1 GI:5070281 KEYWORDS . SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. REFERENCE 1 (bases 1 to 1814) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and RUBISCO spacer sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1814) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (05-JAN-1999) Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1814 /organism="Aureococcus anophagefferens" /strain="CCMP1706" /db_xref="taxon:44056" rRNA <1..>1814 /product="18S ribosomal RNA" BASE COUNT 461 a 385 c 498 g 470 t BASE COUNT 461 a 385 c 498 g 470 t 1459 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCug-- --|uggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ccuccg gac-ugggg- uu-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ua-cc----- ucg-ggaa|g uugguuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Aur.anop.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureococcus anophagefferens. ACCESSION No information KEYWORDS No information. SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117777 LOCUS AF117777 1816 bp DNA PLN 16-JUN-1999 DEFINITION Aureococcus anophagefferens strain CCMP1707 18S ribosomal RNA gene, partial sequence. ACCESSION AF117777 NID g5070282 VERSION AF117777.1 GI:5070282 KEYWORDS . SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. REFERENCE 1 (bases 1 to 1816) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and RUBISCO spacer sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1816) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (05-JAN-1999) Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1816 /organism="Aureococcus anophagefferens" /strain="CCMP1707" /db_xref="taxon:44056" rRNA <1..>1816 /product="18S ribosomal RNA" BASE COUNT 461 a 386 c 499 g 470 t BASE COUNT 461 a 386 c 499 g 470 t 1457 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCug-- --|uggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ccuccg gac-ugggg- uu-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ua-cc----- ucg-ggaa|g uugguuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Aur.anop.4 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureococcus anophagefferens. ACCESSION No information KEYWORDS No information. SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117778 LOCUS AF117778 1799 bp DNA PLN 16-JUN-1999 DEFINITION Aureococcus anophagefferens strain CCMP1708 18S ribosomal RNA gene, partial sequence. ACCESSION AF117778 NID g5070283 VERSION AF117778.1 GI:5070283 KEYWORDS . SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. REFERENCE 1 (bases 1 to 1799) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and RUBISCO spacer sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (05-JAN-1999) Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1799 /organism="Aureococcus anophagefferens" /strain="CCMP1708" /db_xref="taxon:44056" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 454 a 382 c 495 g 468 t BASE COUNT 454 a 382 c 495 g 468 t 1474 others ORIGIN 1 |~~~~~~~~~ ~~~GU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCug-- --|uggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ccuccg gac-ugggg- uu-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ua-cc----- ucg-ggaa|g uugguuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Aur.anop.5 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureococcus anophagefferens. ACCESSION No information KEYWORDS No information. SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF117779 LOCUS AF117779 1802 bp DNA PLN 16-JUN-1999 DEFINITION Aureococcus anophagefferens strain CCMP1785 18S ribosomal RNA gene, partial sequence. ACCESSION AF117779 NID g5070284 VERSION AF117779.1 GI:5070284 KEYWORDS . SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. REFERENCE 1 (bases 1 to 1802) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and RUBISCO spacer sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1802) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (05-JAN-1999) Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1802 /organism="Aureococcus anophagefferens" /strain="CCMP1785" /db_xref="taxon:44056" rRNA <1..>1802 /product="18S ribosomal RNA" BASE COUNT 455 a 382 c 496 g 468 t 1 others BASE COUNT 455 a 382 c 496 g 468 t 1472 others ORIGIN 1 |~~~~~~~~~ ~~~GU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCug-- --|uggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGN AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ccuccg gac-ugggg- uu-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ua-cc----- ucg-ggaa|g uugguuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAG~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Aur.anop.6 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureococcus anophagefferens. ACCESSION No information KEYWORDS No information. SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF118443 LOCUS AF118443 1814 bp DNA PLN 16-JUN-1999 DEFINITION Aureococcus anophagefferens strain CCMP1784 18S ribosomal RNA gene, partial sequence. ACCESSION AF118443 NID g5070327 VERSION AF118443.1 GI:5070327 KEYWORDS . SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. REFERENCE 1 (bases 1 to 1814) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and rubisco spacer sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1814) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (07-JAN-1999) Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1814 /organism="Aureococcus anophagefferens" /strain="CCMP1784" /db_xref="taxon:44056" rRNA <1..>1814 /product="18S ribosomal RNA" BASE COUNT 461 a 385 c 498 g 470 t BASE COUNT 461 a 385 c 498 g 470 t 1459 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCug-- --|uggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ccuccg gac-ugggg- uu-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ua-cc----- ucg-ggaa|g uugguuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---A~~~~~~ ~~~~~~~~|| ||| // LOCUS Aur.anop.7 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureococcus anophagefferens. ACCESSION No information KEYWORDS No information. SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF119119 LOCUS AF119119 1799 bp DNA PLN 16-JUN-1999 DEFINITION Aureococcus anophagefferens 18S ribosomal RNA gene, partial sequence. ACCESSION AF119119 NID g5070338 VERSION AF119119.1 GI:5070338 KEYWORDS . SOURCE Aureococcus anophagefferens. ORGANISM Aureococcus anophagefferens Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. REFERENCE 1 (bases 1 to 1799) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and rubisco spacer sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1799) AUTHORS Bailey,J.C. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (11-JAN-1999) Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1799 /organism="Aureococcus anophagefferens" /strain="CCMP1794" /db_xref="taxon:44056" rRNA <1..>1799 /product="18S ribosomal RNA" BASE COUNT 454 a 382 c 495 g 468 t BASE COUNT 454 a 382 c 495 g 468 t 1474 others ORIGIN 1 |~~~~~~~~~ ~~~GU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgauu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCug-- --|uggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ccuccg gac-ugggg- uu-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ua-cc----- ucg-ggaa|g uugguuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUCU- CCGUAGG(UG AA)CCUGCAG 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Aur.lagune 3273 bp RNA RNA 24-JAN-191 DEFINITION Aureoumbra lagunensis. ACCESSION No information KEYWORDS No information. SOURCE Aureoumbra lagunensis. ORGANISM Aureoumbra lagunensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U40258 LOCUS ALU40258 2236 bp DNA PLN 10-DEC-1995 DEFINITION Aureomonas lagunensis 18S ribosomal RNA gene sequence. ACCESSION U40258 KEYWORDS . SOURCE Aureomonas lagunensis. ORGANISM Aureomonas lagunensis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae; Aureomonas. REFERENCE 1 (bases 1 to 2236) AUTHORS DeYoe,H.R., Chan,A.M. and Suttle,C.A. TITLE Phylogeny of Aureococcus anophagefferens and a morphologically similar bloom-forming alga from Texas as determined by 18S ribosomal RNA sequence analysis JOURNAL J. Phycol. 31 (3), 413-418 (1995) REFERENCE 2 (bases 1 to 2236) AUTHORS DeYoe,H.R. TITLE Direct Submission JOURNAL Submitted (06-NOV-1995) Hudson R. DeYoe, University of Texas Marine Science Institute, P.O. Box 1267, Port Aransas, TX 78373, USA COMMENT NCBI gi: 1110500 FEATURES Location/Qualifiers source 1..2236 /strain="TBA" /organism="Aureomonas lagunensis" /note="Stockwell et DeYoe" rRNA 1..2236 /product="18S ribosomal RNA" misc_feature 572..995 /note="insertion sequence found in this alga but not in other closely related organisms" BASE COUNT 603 a 461 c 603 g 561 t 8 others ORIGIN BASE COUNT 470 a 370 c 489 g 481 t 1463 others ORIGIN 1 |~~~~~~AAC GUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaaugacu uu-------- 121 ---gu-a-ca guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-- AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UUAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-U UUC)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAGUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCACUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-RAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgy cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG GGAGGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -AAGAUGU|G GAGCUUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCcg-- --|acgg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-gc| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCAGAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GUACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--gga a-)ggccu-g gguaaucuu- cgaac]---- ---------- ------GUGU 2881 ACC-GUGAUU GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUAUCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCWCCU ACCGAUUGAA CGAUucggug aaa-uccucg gac-uuuag- ca-c-gca-a 3061 g-cc------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ug-cc----- gag-ggaa|g uugauuaaac 3181 cucaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGGAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Cocc.pel.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Coccoid pelagophyte CCMP1410. ACCESSION No information KEYWORDS No information. SOURCE Coccoid pelagophyte CCMP1410. ORGANISM Coccoid pelagophyte CCMP1410. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U40926 LOCUS CPU40926 1807 bp DNA PLN 03-JAN-1997 DEFINITION Coccoid pelagophyte CCMP1410 nuclear 18S ribosomal RNA gene. ACCESSION U40926 NID g1762110 KEYWORDS . SOURCE Coccoid pelagophyte CCMP1410. ORGANISM Coccoid pelagophyte CCMP1410 Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae. REFERENCE 1 (bases 1 to 1807) AUTHORS Potter,D., LaJeunesse,T.C., Saunders,G.W. and Andersen,R.A. TITLE Convergent evolution masks extensive biodiversity among marine coccoid picoplankton JOURNAL Biodivers. Conserv. (1995) In press REFERENCE 2 (bases 1 to 1807) AUTHORS Potter,D., LaJeunesse,T.C., Saunders,G.W. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) Daniel Potter, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1807 /organism="Coccoid pelagophyte CCMP1410" /strain="CCMP 1410" rRNA 1..1807 /product="18S ribosomal RNA" BASE COUNT 454 a 387 c 496 g 470 t BASE COUNT 454 a 387 c 496 g 470 t 1466 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgacu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucucu-ug- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---agaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUU--G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAGUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCACUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -g-c-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCUUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAA- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUUUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCcg-- --|acgu--a aug-c(auuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-gc| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gu-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GC(--- ---------- ----gacua- 2641 )GCCAAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GUACAA---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccc-g gguaaucu-g ugaac]---- ---------- ------UUGU 2881 ACC-GUGAUU GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-cccucg gac-uuugg- ca-c-gcu-u 3061 g-cu------ ---------- ---------- --(ucgc--- -)-------- ---------- 3121 ---------- ------g-gc -gag----cg ug-cc----- gag-ggaa|g uugguuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUC~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cocc.pel.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Coccoid pelagophyte CCMP1395. ACCESSION No information KEYWORDS No information. SOURCE Coccoid pelagophyte CCMP1395. ORGANISM Coccoid pelagophyte CCMP1395. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U40927 LOCUS CPU40927 1792 bp DNA PLN 03-JAN-1997 DEFINITION Coccoid pelagophyte CCMP1395 nuclear 18S ribosomal RNA gene. ACCESSION U40927 NID g1762111 KEYWORDS . SOURCE Coccoid pelagophyte CCMP1395. ORGANISM Coccoid pelagophyte CCMP1395 Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae. REFERENCE 1 (bases 1 to 1792) AUTHORS Potter,D., LaJeunesse,T.C., Saunders,G.W. and Andersen,R.A. TITLE Convergent evolution masks extensive biodiversity among marine coccoid picoplankton JOURNAL Biodivers. Conserv. (1995) In press REFERENCE 2 (bases 1 to 1792) AUTHORS Potter,D., LaJeunesse,T.C., Saunders,G.W. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) Daniel Potter, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1792 /organism="Coccoid pelagophyte CCMP1395" /strain="CCMP 1395" rRNA 1..1792 /product="18S ribosomal RNA" BASE COUNT 457 a 379 c 494 g 462 t BASE COUNT 457 a 379 c 494 g 462 t 1481 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~CU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaa-cga-c uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGuu-- --|cggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cg| a--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ucucag gac-ugggg- ca-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ug-cc----- ucg-ggaa|u cugauuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AG~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cocc.pel.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Coccoid pelagophyte CCMP1145. ACCESSION No information KEYWORDS No information. SOURCE Coccoid pelagophyte CCMP1145. ORGANISM Coccoid pelagophyte CCMP1145. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U40928 LOCUS CPU40928 1816 bp DNA PLN 03-JAN-1997 DEFINITION Coccoid pelagophyte CCMP1145 nuclear 18S ribosomal RNA gene. ACCESSION U40928 NID g1762112 KEYWORDS . SOURCE Coccoid pelagophyte CCMP1145. ORGANISM Coccoid pelagophyte CCMP1145 Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae. REFERENCE 1 (bases 1 to 1816) AUTHORS Potter,D., LaJeunesse,T.C., Saunders,G.W. and Andersen,R.A. TITLE Convergent evolution masks extensive biodiversity among marine coccoid picoplankton JOURNAL Biodivers. Conserv. (1995) In press REFERENCE 2 (bases 1 to 1816) AUTHORS Potter,D., LaJeunesse,T.C., Saunders,G.W. and Andersen,R.A. TITLE Direct Submission JOURNAL Submitted (20-NOV-1995) Daniel Potter, Bigelow Laboratory for Ocean Sciences, McKown Point Road, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1816 /organism="Coccoid pelagophyte CCMP1145" /strain="CCMP 1145" rRNA 1..1816 /product="18S ribosomal RNA" BASE COUNT 463 a 382 c 500 g 471 t BASE COUNT 463 a 382 c 500 g 471 t 1457 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgauc uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGug-- --|cggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-ug| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ucuccg gau-uggag- ca-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ug-cu----- uug-agaa|g uugauuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Pel.subvir 3273 bp RNA RNA 24-JAN-191 DEFINITION Pelagococcus subviridis. ACCESSION No information KEYWORDS No information. SOURCE Pelagococcus subviridis. ORGANISM Pelagococcus subviridis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U14386 LOCUS PSU14386 1816 bp DNA PLN 07-DEC-1994 DEFINITION Pelagococcus subviridis 18S small-subunit rRNA gene. ACCESSION U14386 KEYWORDS . SOURCE Pelagococcus subviridis. ORGANISM Pelagococcus subviridis Eukaryotae; Hyperchondria; Eukaryote crown group; Stramenopiles; Pelagomonadales; Pelagococcus. REFERENCE 1 (bases 1 to 1816) AUTHORS Saunders,G.W., Potter,D., Paskind,M.P. and Andersen,R.A. TITLE Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1816) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (05-SEP-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595804 FEATURES Location/Qualifiers source 1..1816 /organism="Pelagococcus subviridis" /isolate="CCMP1429" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1816 /product="18S small-subunit rRNA" primer_bind complement(1790..1816) /note="PCR 3' end primer" BASE COUNT 463 a 385 c 499 g 469 t ORIGIN BASE COUNT 463 a 385 c 499 g 469 t 1457 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgauc uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGua-- --|cggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cg| u--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCggug aaa-ucucag gac-cgcgg- ca-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ug-cc----- uug-ggaa|u cugauuaaac 3181 cucacuaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Pel.calceo 3273 bp RNA RNA 24-JAN-191 DEFINITION Pelagomonas calceolata. ACCESSION No information KEYWORDS No information. SOURCE Pelagomonas calceolata. ORGANISM Pelagomonas calceolata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U14389 LOCUS PCU14389 1816 bp DNA PLN 07-DEC-1994 DEFINITION Pelagomonas calceolata 18S small-subunit rRNA gene. ACCESSION U14389 KEYWORDS . SOURCE Pelagomonas calceolata. ORGANISM Pelagomonas calceolata Eukaryotae; Hyperchondria; Eukaryote crown group; Stramenopiles; Pelagomonadales; Pelagomonas. REFERENCE 1 (bases 1 to 1816) AUTHORS Andersen,R.A., Saunders,G.W., Paskind,M.P. and Sexton,J.P. TITLE Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. et sp. nov. and the description of a new algal class, the Pelagophyceae classis nov JOURNAL J. Phycol. 29, 701-715 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1816) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (05-SEP-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, 3052, Australia STANDARD full automatic COMMENT NCBI gi: 595807 FEATURES Location/Qualifiers source 1..1816 /organism="Pelagomonas calceolata" /isolate="CCMP1214" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1816 /product="18S small-subunit rRNA" primer_bind complement(1790..1816) /note="PCR 3' end primer" BASE COUNT 463 a 382 c 500 g 471 t ORIGIN BASE COUNT 463 a 382 c 500 g 471 t 1457 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgauc uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACAUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u uac)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uuggcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu cagcacugu- -AUGA(-GAA A)UCA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUAUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGGug-- --|cggg--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--g-c-ug| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---aa-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GCACAC---- ---------- ----(----) [gc-aacgag 2761 -ucu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g ugaac]---- ---------- ------GUGU 2881 GCC-GUGAUU GGGAUUGAUU GU(UGCAAUU U)UCAA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUUCGGUG AAA-UCUCCG GAu-uggag- ca-c-gca-a 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gaa----cg ug-cu----- uug-agaa|g uugauuaaac 3181 cucACUAUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Pulvin.sp. 3273 bp RNA RNA 24-JAN-191 DEFINITION Pulvinaria sp. CCMP 292. ACCESSION No information KEYWORDS No information. SOURCE Pulvinaria sp. CCMP 292. ORGANISM Pulvinaria sp. CCMP 292. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U78032 LOCUS PSU78032 1815 bp DNA PLN 02-FEB-1997 DEFINITION Pulvinaria sp. CCMP 292 small-subunit ribosomal RNA gene, complete sequence. ACCESSION U78032 NID g1813631 KEYWORDS . SOURCE Pulvinaria sp. CCMP 292. ORGANISM Pulvinaria sp. CCMP 292 Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae; Sarcinochrysidales; Pulvinaria. REFERENCE 1 (bases 1 to 1815) AUTHORS Saunders,G.W., Potter,D. and Andersen,R.A. TITLE Phylogenetic affinities of the Sarcinochrysidales and Chrysomeridales (Heterokonta) based on analyses of molecular and combined data JOURNAL J. Phycol. (1997) In press REFERENCE 2 (bases 1 to 1815) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Biology, University of New Brunswick, Fredericton, N.B. E3B6E1, Canada FEATURES Location/Qualifiers source 1..1815 /organism="Pulvinaria sp. CCMP 292" /strain="CCMP 292" primer_bind 1..20 /note="forward PCR primer" rRNA 1..1815 /note="putative" /product="small-subunit ribosomal RNA" primer_bind complement(1789..1815) /note="reverse PCR primer" BASE COUNT 459 a 383 c 495 g 478 t BASE COUNT 459 a 383 c 495 g 478 t 1458 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgacu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUU--G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAUAG-CC GG-GCUC(-u ucu)GAGUCU -G-GU-UUUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>UAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uccgcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu gggcacugu- -AUGU(-GAA A)ACA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAA- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUUUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGAcg-- --|aauc--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--u-a-uu| c--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---gc-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCAAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GUCCAC---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g cgaac]---- ---------- ------GUGG 2881 ACC-GUGAUU GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA CGGUUCggug aga-ccuuug gac-ugugg- ua-a-gcg-a 3061 g-cc------ ---------- ---------- --(uugc--- -)-------- ---------- 3121 ---------- ------g-gc -gag----cu ua-cc----- gcg-ggaa|g uuggucaaac 3181 cucaucgUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Sar.marina 3273 bp RNA RNA 24-JAN-191 DEFINITION Sarcinochrysis marina. ACCESSION No information KEYWORDS No information. SOURCE Sarcinochrysis marina. ORGANISM Sarcinochrysis marina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U78033 LOCUS SMU78033 1815 bp DNA PLN 02-FEB-1997 DEFINITION Sarcinochrysis marina small-subunit ribosomal RNA gene, complete sequence. ACCESSION U78033 NID g1813632 KEYWORDS . SOURCE Sarcinochrysis marina. ORGANISM Sarcinochrysis marina Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae; Sarcinochrysidales; Sarcinochrysis. REFERENCE 1 (bases 1 to 1815) AUTHORS Saunders,G.W., Potter,D. and Andersen,R.A. TITLE Phylogenetic affinities of the Sarcinochrysidales and Chrysomeridales (Heterokonta) based on analyses of molecular and combined data JOURNAL J. Phycol. (1997) In press REFERENCE 2 (bases 1 to 1815) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Biology, University of New Brunswick, Fredericton, N.B. E3B6E1, Canada FEATURES Location/Qualifiers source 1..1815 /organism="Sarcinochrysis marina" /strain="CCMP 770" primer_bind 1..20 /note="forward PCR primer" rRNA 1..1815 /note="putative" /product="small-subunit ribosomal RNA" primer_bind complement(1789..1815) /note="reverse PCR primer" BASE COUNT 461 a 380 c 492 g 482 t BASE COUNT 461 a 380 c 492 g 482 t 1458 others ORIGIN 1 |~~~~~~CAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgacu uu-------- 121 ---gu-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu-ua- c-u>ACUUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---ggaucau uc-aa|guuu cugc|CCUAU 601 CAGCUUU--G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CAU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAGAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-u ucc)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>UAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-U GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|CGGU-U- 1681 GGGGUUCUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU GCUGC(-GAA A)GC|GUCGA ACAA|G-GAC GUUCUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAU |UC|-agga- uccgcgg-u- cguu--(--- 1921 -uguucuc-- -------)-- -gac-uccgu gggcacugu- -AUGU(-GAA A)ACA--AAA 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAA- AGUAAGGAUU GAC-AGA(UU -GAGAG-C)U 2161 CUUUCUUGAU UCUUUGGG]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUuu-- --|aacc--a aug-c(gcuu ---------- 2401 ---------- ---------- -----)gcau u--u-g-uu| g--------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ca-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UUG-GU(--- ---------- ----gacua- 2641 )ACCAAAGGA AGCUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG GUCCAC---- ---------- ----(----) [uc-aacgag 2761 -uuu------ -|-------- ---------- ---------- ---------- |aucaccu-u 2821 gguc(--ggc a-)ggccu-g gguaaucu-g cgaac]---- ---------- ------GUGG 2881 ACC-GUGAUU GGGAUAGAUU GU(UGCAAUU U)UCAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAG)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUUCggug aga-ccuuug gac-ugugg- uu-g-gua-a 3061 g-cu------ ---------- ---------- --(ucgc--- -)-------- ---------- 3121 ---------- ------g-gc -gag----cc ua-cc----- gug-ggaa|g uuggucaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Phaeop 3273 bp RNA RNA 13-JAN-1999 DEFINITION Phaeophyceae/Xanthophyceae group. ACCESSION No information KEYWORDS No information. SOURCE Phaeophyceae/Xanthophyceae group. ORGANISM Phaeophyceae/Xanthophyceae group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... -......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Aga.clathr 3273 bp RNA RNA 16-OCT-1999 DEFINITION Agarum clathratum.; . ACCESSION AF1235 6 KEYWORDS . SOURCE Agarum clathratum. ORGANISM Agarum clathratum. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123576 BASE COUNT 421 a 358 c 474 g 467 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cc ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ala.fistul 3273 bp RNA RNA 16-OCT-1999 DEFINITION Alaria fistulosa.; . ACCESSION AF1235 8 KEYWORDS . SOURCE Alaria fistulosa. ORGANISM Alaria fistulosa. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123578 BASE COUNT 420 a 357 c 475 g 468 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ana.japoni 3273 bp RNA RNA 24-JAN-191 DEFINITION Analipus japonicus. ACCESSION No information KEYWORDS No information. SOURCE Analipus japonicus. ORGANISM Analipus japonicus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17009 ID AJRG18S standard; DNA; PLN; 863 BP. XX AC L17009; XX DT 21-DEC-1993 (Rel. 38, Created) DT 21-DEC-1993 (Rel. 38, Last updated, Version 1) XX DE Analipus japonicus 18S ribosomal RNA (18S rRNA) gene, partial. XX KW 18S ribosomal RNA. XX OS Analipus japonicus OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae; OC Ectocarpales; Heterochordariaceae. XX RN [1] RP 1-863 RA Tan I.H., Druehl L.D.; RT "Phylogenetic relationships among the Ectocarpacean (sensu RT Gabrielson et al. 1989) families: 18S rDNA sequence analysis"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA <1..>863 FT /product="18S ribosomal RNA" FT /gene="18S rRNA" FT source 1..863 FT /organism="Analipus japonicus" FT /sequenced_mol="DNA" XX SQ Sequence 863 BP; 212 A; 186 C; 236 G; 229 T; 0 other; BASE COUNT 212 a 186 c 236 g 229 t 2410 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ---------- ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GGA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUUCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGGAAGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuc---- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-c-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Asp.bullos 3273 bp RNA RNA 24-JAN-191 DEFINITION Asperococcus bullosus. ACCESSION No information KEYWORDS No information. SOURCE Asperococcus bullosus. ORGANISM Asperococcus bullosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17013 LOCUS ASZRG18S 861 bp ds-DNA PLN 24-MAY-1993 DEFINITION Asperococcus bullosus 18S ribosomal RNA gene, partial. ACCESSION L17013 KEYWORDS 18S ribosomal RNA. SOURCE Asperococcus bullosus DNA. ORGANISM Asperococcus bullosus Eukaryota; Chromophycota; Phaeophyceae; Ectocarpales; Dictyosiphonaceae. REFERENCE 1 (bases 1 to 861) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>861 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..861 /organism="Asperococcus bullosus" /sequenced_mol="DNA" BASE COUNT 218 a 181 c 231 g 231 t ORIGIN BASE COUNT 218 a 181 c 231 g 231 t 2412 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ---------~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cag-gu(--- ---------- ----gacua- 2641 )ACCUGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucu----- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-auuccg gau-uccgu- ag-c-uua-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uu uu-ac----- gaa-aaaa|g uuauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cho.filum 3273 bp RNA RNA 16-OCT-1999 DEFINITION Chorda filum.; . ACCESSION AF1235 5 KEYWORDS . SOURCE Chorda filum. ORGANISM Chorda filum. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123585 BASE COUNT 420 a 354 c 475 g 470 t 1554 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AAUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUU-GC CGGGCUU(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)CG|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G G-GCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cg-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---uG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccu-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGUUC AU(UGCAAUU A)UUGA-ACU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-c-gcg-c 3061 g-cu------ ---------- ---------- --(uaac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cho.toment 3273 bp RNA RNA 24-JAN-191 DEFINITION Chorda tomentosa. ACCESSION No information KEYWORDS No information. SOURCE Chorda tomentosa. ORGANISM Chorda tomentosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L43056 LOCUS HCORGOS 1773 bp DNA PLN 03-JAN-1996 DEFINITION Chorda tomentosa small subunit ribosomal RNA (rRNA) gene. ACCESSION L43056 NID g1146412 KEYWORDS ribosomal RNA small subunit. SOURCE Chorda tomentosa DNA. ORGANISM Chorda tomentosa Eukaryota; Chromista; Heterokonta; Phaeophyta; Phaeophyceae; Chordariales; Chordariaceae. REFERENCE 1 (bases 1 to 1773) AUTHORS Tan,I.H. and Druehl,L.D. TITLE A ribosomal DNA phylogeny supports the close evolutionary relationships JOURNAL J. Phycol. 32 (1), 112-118 (1996) COMMENT NCBI gi: 1146412 FEATURES Location/Qualifiers source 1..1773 /organism="Chorda tomentosa" /sequenced_mol="DNA" rRNA 1..1773 /product="ribosomal RNA small subunit" BASE COUNT 435 a 371 c 486 g 481 t ORIGIN BASE COUNT 435 a 371 c 486 g 481 t 1500 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGG-UAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )ACCGAA-GA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuu---- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)gg-cc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCAUGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-c-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- ---------- ---------- 3121 ---------- ------g-gc -cgu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Col.peregr 3273 bp RNA RNA 24-JAN-191 DEFINITION Colpomenia peregrina. ACCESSION No information KEYWORDS No information. SOURCE Colpomenia peregrina. ORGANISM Colpomenia peregrina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17014 LOCUS CLGRG18S 862 bp ds-DNA PLN 24-MAY-1993 DEFINITION Colpomenia peregrina 18S ribosomal RNA gene, partial. ACCESSION L17014 KEYWORDS 18S ribosomal RNA. SOURCE Colpomenia peregrina DNA. ORGANISM Colpomenia peregrina Eukaryota; Chromophycota; Phaeophyceae; Ectocarpales; Scytosiphonaceae. REFERENCE 1 (bases 1 to 862) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>862 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..862 /organism="Colpomenia peregrina" /sequenced_mol="DNA" BASE COUNT 217 a 177 c 231 g 237 t ORIGIN BASE COUNT 217 a 177 c 231 g 237 t 2411 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ------~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuau--- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-aucucg gau-uuugu- uu-u-uua-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uc ag-ac----- gag-agaa|g uuauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cos.cost.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Costaria costata. ACCESSION No information KEYWORDS No information. SOURCE Costaria costata. ORGANISM Costaria costata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X53229 ID CC16S standard; DNA; PLN; 1799 BP. XX AC X53229; XX DT 01-MAR-1991 (Rel. 27, Last updated, Version 3) DT 13-AUG-1990 (Rel. 25, Created) XX DE Costaria costata 16S rRNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Costaria costata OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae. XX RN [1] RP 1-1799 RA Stackebrandt E.; RT ; RL Submitted (29-AUG-1989) on tape to the EMBL Data Library by: RL Stackebrandt E.. XX RN [2] RA Bhattcharya D., Druehl L.D.; RT "Phylogenetic comparison of the small-subunit ribosomal DNA RT sequence of costaria costata (Phaeophyta) with those of other RT algae, vascular plants and oomycetes"; RL J. Phycol. 24:539-543(1988). XX FH Key Location/Qualifiers FH FT rRNA 205..1799 FT /note="16S-like rRNA" XX SQ Sequence 1799 BP; 433 A; 368 C; 495 G; 503 T; 0 other; BASE COUNT 398 a 314 c 441 g 442 t 1678 others ORIGIN 1 |~~~~~~AAU CUGGU(UGA) UUCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaggcc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GG-AGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GUUA(-- uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU C-AAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)-C|GUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-uu cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)C-GUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )accgaA-GA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuu--- -|-------- ---------- ---------- ---------- |uuuuucc-u 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUC~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cos.cost.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Costaria costata. ACCESSION No information KEYWORDS No information. SOURCE Costaria costata. ORGANISM Costaria costata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M97958 LOCUS COS16SRRNA 1816 bp ds-DNA PLN 08-AUG-1992 DEFINITION Costaria costata DNA sequence. ACCESSION M97958 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Costaria costata DNA. ORGANISM Costaria costata Eukaryota; Chromophycota; Phaeophyceae; Laminariales; Laminariaceae. REFERENCE 1 (bases 1 to 1816) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,E., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Evolution (1992) In press STANDARD full staff_entry BASE COUNT 448 a 372 c 501 g 495 t ORIGIN BASE COUNT 448 a 372 c 501 g 495 t 1457 others ORIGIN 1 |~~~~~~AAU CUGGU(UGA) UUCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaggcc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GG-AGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GUUA(-- uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU C-AAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)-C|GUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)C-GUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )accgaA-GA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cc ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacauuu agAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS Des.ligu.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Desmarestia ligulata. ACCESSION No information KEYWORDS No information. SOURCE Desmarestia ligulata. ORGANISM Desmarestia ligulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17018 ID DLRG18S standard; DNA; PLN; 863 BP. XX AC L17018; XX DT 04-JAN-1994 (Rel. 38, Created) DT 04-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE Desmarestia ligulata 18S ribosomal RNA (18S rRNA) gene, partial. XX KW 18S ribosomal RNA. XX OS Desmarestia ligulata OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae; OC Desmarestiales; Desmarestiaceae. XX RN [1] RP 1-863 RA Tan I.H., Druehl L.D.; RT "Phylogenetic relationships among the Ectocarpacean (sensu RT Gabrielson et al. 1989) families: 18S rDNA sequence analysis"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA <1..>863 FT /product="18S ribosomal RNA" FT /gene="18S rRNA" FT source 1..863 FT /organism="Desmarestia ligulata" FT /sequenced_mol="DNA" XX SQ Sequence 863 BP; 215 A; 185 C; 234 G; 229 T; 0 other; BASE COUNT 215 a 185 c 234 g 229 t 2410 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- -----~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacaa- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )ACCGAA-GA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuacu---- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-u-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gccu---cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaauaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Des.ligu.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Desmarestia ligulata. ACCESSION No information KEYWORDS No information. SOURCE Desmarestia ligulata. ORGANISM Desmarestia ligulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L43060 LOCUS DMERGE 1775 bp DNA PLN 03-JAN-1996 DEFINITION Desmarestia ligulata 18S ribosomal RNA (18S rRNA) gene. ACCESSION L43060 NID g1146330 KEYWORDS 18S ribosomal RNA; small subunit ribosomal RNA. SOURCE Desmarestia ligulata DNA. ORGANISM Desmarestia ligulata Eukaryotae; mitochondrial eukaryotes; stramenopiles; Phaeophyceae/Xanthophyceae group; Phaeophyceae; Desmarestiales; Desmarestiaceae; Desmarestia. REFERENCE 1 (bases 1 to 1775) AUTHORS Tan,I.H. and Druehl,L.D. TITLE A ribosomal DNA phylogeny supports the close evolutionary relationships JOURNAL J. Phycol. 32 (1), 112-118 (1996) COMMENT NCBI gi: 1146330 FEATURES Location/Qualifiers source 1..1775 /organism="Desmarestia ligulata" /sequenced_mol="DNA" rRNA 1..1775 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 441 a 368 c 484 g 482 t ORIGIN BASE COUNT 441 a 368 c 484 g 482 t 1498 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AAUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-u uau)aagucu -g-gc-AGUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacaa- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )ACCGAA-GA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuacu---- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-u-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gccu---cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaauaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Eck.cava 3273 bp RNA RNA 16-OCT-1999 DEFINITION Ecklonia cava.; . ACCESSION AF1235 9 KEYWORDS . SOURCE Ecklonia cava. ORGANISM Ecklonia cava. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE from small subunit ribosomal DNA sequences Molecular phylogeny of Laminariales (Phaeophyceae) inferred JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123579 BASE COUNT 421 a 359 c 474 g 466 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cc ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ect.sili.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Ectocarpus siliculosus. ACCESSION No information KEYWORDS No information. SOURCE Ectocarpus siliculosus. ORGANISM Ectocarpus siliculosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17015 LOCUS ECRRG18S 861 bp ds-DNA PLN 24-MAY-1993 DEFINITION Ectocarpus siliculosus 18S ribosomal RNA gene, partial. ACCESSION L17015 KEYWORDS 18S ribosomal RNA. SOURCE Ectocarpus siliculosus DNA. ORGANISM Ectocarpus siliculosus Eukaryota; Chromophycota; Phaeophyceae; Ectocarpales; Ectocarpaceae. REFERENCE 1 (bases 1 to 861) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>861 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..861 /organism="Ectocarpus siliculosus" /sequenced_mol="DNA" BASE COUNT 217 a 180 c 232 g 232 t ORIGIN BASE COUNT 217 a 180 c 232 g 232 t 2412 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- -----~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuac--- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-aucucg gau-uuugu- ug-c-uua-c 3061 g-uu------ ---------- ---------- --(-cac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uu cg-ac----- gag-agaa|g ucauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ect.sili.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Ectocarpus siliculosus. ACCESSION No information KEYWORDS No information. SOURCE Ectocarpus siliculosus. ORGANISM Ectocarpus siliculosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L43062 LOCUS ECRRGE 1774 bp DNA PLN 03-JAN-1996 DEFINITION Ectocarpus siliculosus 18S ribosomal RNA (18S rRNA) gene. ACCESSION L43062 NID g1146341 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Ectocarpus siliculosus DNA. ORGANISM Ectocarpus siliculosus Eukaryotae; mitochondrial eukaryotes; stramenopiles; Phaeophyceae/Xanthophyceae group; Phaeophyceae; Ectocarpales; Ectocarpaceae; Ectocarpus. REFERENCE 1 (bases 1 to 1774) AUTHORS Tan,I.H. and Druehl,L.D. TITLE A ribosomal DNA phylogeny supports the close evolutionary relationships JOURNAL J. Phycol. 32 (1), 112-118 (1996) COMMENT NCBI gi: 1146341 FEATURES Location/Qualifiers source 1..1774 /organism="Ectocarpus siliculosus" /sequenced_mol="DNA" rRNA 1..1774 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 445 a 365 c 479 g 485 t ORIGIN BASE COUNT 445 a 365 c 479 g 485 t 1499 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuac--- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-aucucg gau-uuugu- ug-c-uua-c 3061 g-uu------ ---------- ---------- --(-cac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uu cg-ac----- gag-agaa|g ucauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Egr.menzie 3273 bp RNA RNA 16-OCT-1999 DEFINITION Egregia menziesii; . ACCESSION AF1235 0 KEYWORDS . SOURCE Egregia menziesii. ORGANISM Egregia menziesii. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123580 BASE COUNT 421 a 357 c 476 g 466 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuaaag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGGUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ela.fucico 3273 bp RNA RNA 24-JAN-191 DEFINITION Elachista fucicola. ACCESSION No information KEYWORDS No information. SOURCE Elachista fucicola. ORGANISM Elachista fucicola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17011 LOCUS ELHRG18S 864 bp ds-DNA PLN 24-MAY-1993 DEFINITION Elachista fucicola 18S ribosomal RNA gene, partial. ACCESSION L17011 KEYWORDS 18S ribosomal RNA. SOURCE Elachista fucicola DNA. ORGANISM Elachista fucicola Eukaryota; Chromophycota; Phaeophyceae; Ectocarpales; Elachistaceae. REFERENCE 1 (bases 1 to 864) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>864 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..864 /organism="Elachista fucicola" /sequenced_mol="DNA" BASE COUNT 217 a 181 c 232 g 234 t ORIGIN BASE COUNT 217 a 181 c 232 g 234 t 2409 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ----~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--a 1921 cucucaaag- -------)-- -aac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuucu---- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-auuccg gau-uuugu- ug-c-uua-c 3061 g-cu------ ---------- ---------- --(uuac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uu ug-ac----- gaa-agaa|g uuauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Fuc.distic 3273 bp RNA RNA 24-JAN-191 DEFINITION Fucus distichus. ACCESSION No information KEYWORDS No information. SOURCE Fucus distichus. ORGANISM Fucus distichus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M97959 LOCUS FUU16SRNAA 1817 bp ds-DNA PLN 08-AUG-1992 DEFINITION Fucus distichus DNA sequence. ACCESSION M97959 KEYWORDS 16S-like ribosomal RNA; 18S ribosomal DNA; small subunit ribosomal RNA. SOURCE Fucus distichus DNA. ORGANISM Fucus distichus Eukaryota; Chromophycota; Phaeophyceae; Fucales; Fucaceae. REFERENCE 1 (bases 1 to 1817) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,E., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Evolution (1992) In press STANDARD full staff_entry BASE COUNT 463 a 381 c 492 g 481 t ORIGIN BASE COUNT 463 a 381 c 492 g 481 t 1456 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-u uu-------- 121 ---au-a-cg guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aauuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -CUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-c uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 -auucacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGg-- --|ggcu--u acg-u(uucu ---------- 2401 ---------- ---------- -----)acgu a--g-g-ca| gcu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )accgaAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucucaa-- -|-------- ---------- ---------- ---------- |ucucccu-g 2821 ggcc(--gga a-)ggucc-g gguaaccuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU UU(UGUAAAU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cggaa- cu-u-gag-c 3061 g-cu------ ---------- ---------- --(ucgc--- -)-------- ---------- 3121 ---------- ------g-gc -gca----cu ag-cg----- aag-ggaa|g uuaucuaaac 3181 cucaacauuu agAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 Annnnnnn-- ---nnn~~~~ ~~~~~~~~|| ||| // LOCUS Fuc.gardne 3273 bp RNA RNA 24-JAN-191 DEFINITION Fucus gardneri. ACCESSION No information KEYWORDS No information. SOURCE Fucus gardneri. ORGANISM Fucus gardneri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: X53987 ID FG16SRRNA standard; DNA; PLN; 1817 BP. XX AC X53987; XX DT 29-APR-1992 (Rel. 31, Created) DT 29-APR-1992 (Rel. 31, Last updated, Version 1) XX DE F.gardneri gene for 16S ribosomal RNA small subunit XX KW 16S ribosomal RNA small subunit. XX OS Fucus gardneri OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae; OC Fucales; Fucaceae. XX RN [1] RP 1-1817 RA Sogin M.L.; RT ; RL Submitted (11-JUL-1990) on tape to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX RN [2] RA Bhattacharya D., Mayes C., Stickel S., Sogin M.L.; RT "Primary Structure of the small subunit rRNA coding region from RT the brown alga Fucus distichus"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA <1..>1817 FT /product="16S rRNA small subunit" XX SQ Sequence 1817 BP; 463 A; 381 C; 492 G; 481 T; 0 other; BASE COUNT 463 a 381 c 492 g 481 t 1456 others ORIGIN 1 |~~~~~~AAC CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcga-u uu-------- 121 ---au-a-cg guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aauuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -CUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-c uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 -auucacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGg-- --|ggcu--u acg-u(uucu ---------- 2401 ---------- ---------- -----)acgu a--g-g-ca| gcu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )accgaAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucucaa-- -|-------- ---------- ---------- ---------- |ucucccu-g 2821 ggcc(--gga a-)ggucc-g gguaaccuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU UU(UGUAAAU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cggaa- cu-u-gag-c 3061 g-cu------ ---------- ---------- --(ucgc--- -)-------- ---------- 3121 ---------- ------g-gc -gca----cu ag-cg----- aag-ggaa|g uuaucuaaac 3181 cucaacauuu agAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 Annnnnnn-- ---nnn~~~~ ~~~~~~~~|| ||| // LOCUS Hap.anders 3273 bp RNA RNA 24-JAN-191 DEFINITION Haplogloia andersonii. ACCESSION No information KEYWORDS No information. SOURCE Haplogloia andersonii. ORGANISM Haplogloia andersonii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17012 LOCUS HGORG18S 861 bp ds-DNA PLN 24-MAY-1993 DEFINITION Haplogloia andersonii 18S ribosomal RNA gene, partial. ACCESSION L17012 KEYWORDS 18S ribosomal RNA. SOURCE Haplogloia andersonii DNA. ORGANISM Haplogloia andersonii Eukaryota; Chromophycota; Phaeophyceae; Chordariales; Chordariaceae. REFERENCE 1 (bases 1 to 861) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>861 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..861 /organism="Haplogloia andersonii" /sequenced_mol="DNA" BASE COUNT 218 a 179 c 231 g 233 t ORIGIN BASE COUNT 218 a 179 c 231 g 233 t 2412 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ----~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)g-gu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUAUCACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuu----- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-auuccg gau-uccgu- ca-u-uua-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uc ug-au----- gaa-agaa|g uuauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Kje.crassi 3273 bp RNA RNA 16-OCT-1999 DEFINITION Kjellmaniella crassifolia.; . ACCESSION AF1235 7 KEYWORDS . SOURCE Kjellmaniella crassifolia. ORGANISM Kjellmaniella crassifolia. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123577 BASE COUNT 422 a 358 c 474 g 466 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cc ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lam.japoni 3273 bp RNA RNA 16-OCT-1999 DEFINITION Laminaria japonica.; . ACCESSION AF1235 5 KEYWORDS . SOURCE Laminaria japonica. ORGANISM Laminaria japonica. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123575 BASE COUNT 421 a 357 c 474 g 468 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lea.diffor 3273 bp RNA RNA 24-JAN-191 DEFINITION Leathesia difformis. ACCESSION No information KEYWORDS No information. SOURCE Leathesia difformis. ORGANISM Leathesia difformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L16915 LOCUS LTHA 861 bp ds-DNA PLN 21-MAY-1993 DEFINITION Leathesia difformis DNA sequence. ACCESSION L16915 KEYWORDS . SOURCE Leathesia difformis DNA. ORGANISM Leathesia difformis Eukaryota; Chromophycota; Phaeophyceae; Ectocarpales; Leathesiaceae. REFERENCE 1 (bases 1 to 861) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophyceae) orders as inferred from 18S rRNA gene sequence JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers source 1..861 /organism="Leathesia difformis" /sequenced_mol="DNA" BASE COUNT 218 a 179 c 230 g 234 t ORIGIN BASE COUNT 218 a 179 c 230 g 234 t 2412 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ---~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)g-gu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuuu--- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-auuccg gau-uccgu- ag-c-uua-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uu uu-ac----- gaa-aaaa|g uuauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lesson.sp. 3273 bp RNA RNA 16-OCT-1999 DEFINITION Lessonia sp. strain Ilo. str. Ilo small subunit ribosomal RNA gene, complete sequence; . ACCESSION AF1235 1 KEYWORDS . SOURCE Lessonia sp. strain Ilo. str. Ilo small subunit ribosomal RNA gene, complete sequence. ORGANISM Lessonia sp. strain Ilo. REFERENCE 1 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1720) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123581 BASE COUNT 421 a 360 c 473 g 466 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|gacu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cc ug-cc----- gug-ggaa|g uugucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pos.palmae 3273 bp RNA RNA 16-OCT-1999 DEFINITION Postelsia palmaeformis.; . ACCESSION AF1235 2 KEYWORDS . SOURCE Postelsia palmaeformis. ORGANISM Postelsia palmaeformis. REFERENCE 1 (bases 1 to 1721) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1721) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123582 BASE COUNT 422 a 357 c 474 g 467 t 1553 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-a uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uucu ---------- 2401 ---------- ---------- -----)gugu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuu-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-u 3061 g-cu------ ---------- ---------- --(uuac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cc ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGG~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pse.gracil 3273 bp RNA RNA 16-OCT-1999 DEFINITION Pseudochorda gracilis.; . ACCESSION AF1235 3 KEYWORDS . SOURCE Pseudochorda gracilis. ORGANISM Pseudochorda gracilis. REFERENCE 1 (bases 1 to 1718) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1718) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123583 BASE COUNT 420 a 357 c 476 g 465 t 1555 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)CG|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuaaag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G G-GCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CAA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuauu--- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pse.nagaii 3273 bp RNA RNA 16-OCT-1999 DEFINITION Pseudochorda nagaii.; . ACCESSION AF1235 4 KEYWORDS . SOURCE Pseudochorda nagaii. ORGANISM Pseudochorda nagaii. REFERENCE 1 (bases 1 to 1718) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Molecular phylogeny of Laminariales (Phaeophyceae) inferred from small subunit ribosomal DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1718) AUTHORS Boo,S.M., Lee,W.J., Yoon,H.S., Kato,A. and Kawai,H. TITLE Direct Submission JOURNAL Submitted (27-JAN-1999) Biology, Chungnam National University, Yousung-gu, Gung-dong, 220, Daejon 305-764, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AF123584 BASE COUNT 420 a 355 c 476 g 467 t 1555 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUCAGUC 181 AU-AGUUUAU UUGAAAG<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)CG|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuaaag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G G-GCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCg-gu(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CAA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuauu--- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-u-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----uu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pun.expans 3273 bp RNA RNA 24-JAN-191 DEFINITION Punctaria expansa. ACCESSION No information KEYWORDS No information. SOURCE Punctaria expansa. ORGANISM Punctaria expansa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17010 LOCUS PUXRG18S 861 bp ds-DNA PLN 24-MAY-1993 DEFINITION Punctaria expansa 18S ribosomal RNA gene, partial. ACCESSION L17010 KEYWORDS 18S ribosomal RNA. SOURCE Punctaria expansa DNA. ORGANISM Punctaria expansa Eukaryota; Chromophycota; Phaeophyceae; Ectocarpales; Punctariaceae. REFERENCE 1 (bases 1 to 861) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>861 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..861 /organism="Punctaria expansa" /sequenced_mol="DNA" BASE COUNT 218 a 180 c 230 g 233 t ORIGIN BASE COUNT 218 a 180 c 230 g 233 t 2412 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ---~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuu----- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-auuccg gau-uccgu- ag-c-uua-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uu uu-ac----- gaa-aaaa|g uuauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ral.fungif 3273 bp RNA RNA 24-JAN-191 DEFINITION Ralfsia fungiformis. ACCESSION No information KEYWORDS No information. SOURCE Ralfsia fungiformis. ORGANISM Ralfsia fungiformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17019 ID RFRG18S standard; DNA; PLN; 864 BP. XX AC L17019; XX DT 07-JAN-1994 (Rel. 38, Created) DT 07-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE Ralfsia fungiformis 18S ribosomao RNA (18S rRNA) gene, partial. XX KW 18S ribosomal RNA. XX OS Ralfsia fungiformis OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae; OC Ectocarpales; Ralfsiaceae. XX RN [1] RP 1-864 RA Tan I.H., Druehl L.D.; RT "Phylogenetic relationships among the Ectocarpacean (sensu RT Gabrielson et al. 1989) families: 18S rDNA sequence analysis"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA <1..>864 FT /product="18S ribosomal RNA" FT /gene="18S rRNA" FT source 1..864 FT /organism="Ralfsia fungiformis" FT /sequenced_mol="DNA" XX SQ Sequence 864 BP; 215 A; 186 C; 236 G; 227 T; 0 other; BASE COUNT 215 a 186 c 236 g 227 t 2409 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- --~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCAUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacca- 2641 )AUCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuacu---- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-c-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gccu---cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sac.polysc 3273 bp RNA RNA 24-JAN-191 DEFINITION Saccorhiza polyschides. ACCESSION No information KEYWORDS No information. SOURCE Saccorhiza polyschides. ORGANISM Saccorhiza polyschides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L43059 LOCUS SAKRGE 1773 bp DNA PLN 11-JAN-1996 DEFINITION Saccorhiza polyschides 18S ribosomal RNA (18S rRNA) gene. ACCESSION L43059 NID g1161239 KEYWORDS 18S ribosomal RNA; small subunit ribosomal RNA. SOURCE Saccorhiza polyschides DNA. ORGANISM Saccorhiza polyschides Eukaryota; Chromista; Heterokonta; Phaeophyta; Phaeophyceae; Laminariales; Laminariaceae. REFERENCE 1 (bases 1 to 1773) AUTHORS Tan,I.H. and Druehl,L.D. TITLE A ribosomal DNA phylogeny supports the close evolutionary relationships JOURNAL J. Phycol. 32 (1), 112-118 (1996) COMMENT NCBI gi: 1161239 FEATURES Location/Qualifiers source 1..1773 /organism="Saccorhiza polyschides" /sequenced_mol="DNA" rRNA 1..1773 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 440 a 372 c 484 g 477 t ORIGIN BASE COUNT 440 a 372 c 484 g 477 t 1500 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-Gcuu(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 -GGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuuacag- -------)-- -gac-uccgu caggaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuua ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-UU-C 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAA-GA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuu--- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-c-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -cgu----cu ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sph.furcig 3273 bp RNA RNA 24-JAN-191 DEFINITION Sphacelaria furcigera. ACCESSION No information KEYWORDS No information. SOURCE Sphacelaria furcigera. ORGANISM Sphacelaria furcigera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17020 LOCUS SHCRG18S 862 bp ds-DNA PLN 24-MAY-1993 DEFINITION Sphacelaria furcigera 18S ribosomal RNA (18S rRNA) gene, partial. ACCESSION L17020 KEYWORDS 18S ribosomal RNA. SOURCE Sphacelaria furcigera DNA. ORGANISM Sphacelaria furcigera Eukaryota; Chromophycota; Phaeophyceae; Sphacelariales; Sphacelariaceae. REFERENCE 1 (bases 1 to 862) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>862 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..862 /organism="Sphacelaria furcigera" /sequenced_mol="DNA" BASE COUNT 210 a 188 c 237 g 227 t ORIGIN BASE COUNT 210 a 188 c 237 g 227 t 2411 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 G-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--u 1921 ugcuucuac- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)g-gu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU ucg-gu(--- ---------- ----gacua- 2641 )ACCGAA-GA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuucau--- -|-------- ---------- ---------- ---------- |uguuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGCA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-c-gug-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcg----cc ug-cc----- ggg-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Spo.comosu 3273 bp RNA RNA 24-JAN-191 DEFINITION Sporochnus comosus. ACCESSION No information KEYWORDS No information. SOURCE Sporochnus comosus. ORGANISM Sporochnus comosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L43061 LOCUS SPKRGE 1780 bp DNA PLN 11-JAN-1996 DEFINITION Sporochnus comosus 18S ribosomal RNA (18S rRNA) gene. ACCESSION L43061 NID g1161255 KEYWORDS 18S ribosomal RNA; small subunit ribosomal RNA. SOURCE Sporochnus comosus DNA. ORGANISM Sporochnus comosus Eukaryota; Chromista; Heterokonta; Phaeophyta; Phaeophyceae; Sporochnales. REFERENCE 1 (bases 1 to 1780) AUTHORS Tan,I.H. and Druehl,L.D. TITLE A ribosomal DNA phylogeny supports the close evolutionary relationships JOURNAL J. Phycol. 32 (1), 112-118 (1996) COMMENT NCBI gi: 1161255 FEATURES Location/Qualifiers source 1..1780 /organism="Sporochnus comosus" /sequenced_mol="DNA" rRNA 1..1780 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 436 a 377 c 490 g 477 t ORIGIN BASE COUNT 436 a 377 c 490 g 477 t 1493 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUU(-U UAC)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AACC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aacuuacag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uucuuuc-- -|-------- ---------- ---------- ---------- |uuuuccu-g 2821 gguc(--gag a-)ggccc-g gguaaucugu ggaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-ugugg- cu-c-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -cgu----cc ug-cc----- aug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Scy.lome.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Scytosiphon lomentaria. ACCESSION No information KEYWORDS No information. SOURCE Scytosiphon lomentaria. ORGANISM Scytosiphon lomentaria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: D16558 LOCUS SCJRDNA 8345 bp rRNA RNA 30-JUN-1995 DEFINITION Scytosiphon lomentaria rDNA for 18S, 5.8S and 25S rRNA. ACCESSION D16558 KEYWORDS 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA. SOURCE Scytosiphon lomentaria gametophyte rRNA. ORGANISM Scytosiphon lomentaria Eukaryotae; mitochondrial eukaryotes; stramenopiles; Phaeophyceae/Xanthophyceae group; Phaeophyceae; Scytosiphonales; Scytosiphonaceae; Scytosiphon. REFERENCE 1 (bases 1 to 8345) AUTHORS Kawai,H., Muto,H., Fuji,T. and Kato,A. TITLE A 1995. A linked 5S rRNA gene in Scytosiphon lomentaria JOURNAL J. Phycol. 31, 306-311 (1995) COMMENT Submitted (28-JUN-1993) to DDBJ by: Hiroshi Kawai Department of Biology Faculty of Science Kobe University Rokkodai Nada-ku Kobe 657 Japan Phone: 078-881-4492 Email: Kawai@gradura.scitec.kobe.U.ac.jp Fax: 078-881-4492 Sequence updated (19-Jun-19959 by: Hieoahi Kawai. NCBI gi: 882099 FEATURES Location/Qualifiers source 1..8345 /organism="Scytosiphon lomentaria" /dev_stage="gametophyte" /sequenced_mol="rRNA" BASE COUNT 2017 a 2017 c 2241 g 2070 t ORIGIN BASE COUNT 456 a 371 c 488 g 503 t 1455 others ORIGIN 1 |~~~~~~AAU CUGGU(UGA) UUCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU AAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-A-GC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-Gcuu(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUGCGUUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)AG|CUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua--g- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAC 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGC-| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)ggcu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---c--CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACAGA-GGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuau--- -|-------- ---------- ---------- ---------- |uuuuccu-a 2821 gguc(--gag a-)ggccu-g gguaaucuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-aucucg gau-uuugu- uu-u-uua-c 3061 g-cu------ ---------- ---------- --(u-ac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uc ag-acc---- gag-agaa|g ucauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAG-(UG AA)CCUGCGG 3241 AAGGAUCA-- ---UUA---- --------|| ||| // LOCUS Scy.lome.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Scytosiphon lomentaria. ACCESSION No information KEYWORDS No information. SOURCE Scytosiphon lomentaria. ORGANISM Scytosiphon lomentaria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L43066 LOCUS SCJRGE 1775 bp DNA PLN 11-JAN-1996 DEFINITION Scytosiphon lomentaria 18S ribosomal RNA (18S rDNA) gene. ACCESSION L43066 NID g1161240 KEYWORDS 18S ribosomal RNA; ribosomal RNA; ribosomal RNA small subunit; small subunit. SOURCE Scytosiphon lomentaria DNA. ORGANISM Scytosiphon lomentaria Eukaryotae; mitochondrial eukaryotes; stramenopiles; Phaeophyceae/Xanthophyceae group; Phaeophyceae; Scytosiphonales; Scytosiphonaceae; Scytosiphon. REFERENCE 1 (bases 1 to 1775) AUTHORS Tan,I.H. and Druehl,L.D. TITLE A ribosomal DNA phylogeny supports the close evolutionary relationships JOURNAL J. Phycol. 32 (1), 112-118 (1996) COMMENT NCBI gi: 1161240 FEATURES Location/Qualifiers source 1..1775 /organism="Scytosiphon lomentaria" /sequenced_mol="DNA" rRNA 1..1773 /gene="18S rDNA" /note="small subunit" /product="18S Ribosomal RNA" BASE COUNT 447 a 361 c 478 g 489 t ORIGIN BASE COUNT 447 a 361 c 478 g 489 t 1498 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-u uu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguc 181 au-aguuuau uugaaag<-- -ucccu-ua- c-u>ACAUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-Gcuu(-u uac)AAGUCU -G-GC-AAUU GGAAUGAGA| GCAAU(U-UA 961 AAUC)CAU|C -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--CUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG AA|CGGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)g-gu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU GAUCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuau--- -|-------- ---------- ---------- ---------- |uuuuccu-a 2821 gguc(--gag a-)ggccu-g gg-aaucuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-aucucg gau-uuugu- uu-u-uua-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uc ag-ac----- gag-agaa|g ucauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Scy.lome.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Scytosiphon lomentaria. ACCESSION No information KEYWORDS No information. SOURCE Scytosiphon lomentaria. ORGANISM Scytosiphon lomentaria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17016 LOCUS SCJRG18S 862 bp ds-DNA PLN 24-MAY-1993 DEFINITION Scytosiphon lomentaria 18S ribosomal RNA (18S rRNA) gene, partial ACCESSION L17016 KEYWORDS 18S ribosomal RNA. SOURCE Scytosiphon lomentaria DNA. ORGANISM Scytosiphon lomentaria Eukaryota; Chromophycota; Phaeophyceae; Ectocarpales; Scytosiphonaceae. REFERENCE 1 (bases 1 to 862) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>862 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..862 /organism="Scytosiphon lomentaria" /sequenced_mol="DNA" BASE COUNT 219 a 177 c 231 g 235 t ORIGIN BASE COUNT 219 a 177 c 231 g 235 t 2411 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- --~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 aauuua-ag- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)g-gu a--g-g-ug| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU cug-gu(--- ---------- ----gacua- 2641 )ACCAGAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU GAUCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuuau--- -|-------- ---------- ---------- ---------- |uuuuccu-a 2821 gguc(--gag a-)ggccu-g gg-aaucuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UCAUucggug agg-aucucg gau-uuugu- uu-u-uua-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -guu----uc ag-ac----- gag-agaa|g ucauccaaac 3181 cucaugaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Syr.phinne 3273 bp RNA RNA 24-JAN-191 DEFINITION Syringoderma phinneyi. ACCESSION No information KEYWORDS No information. SOURCE Syringoderma phinneyi. ORGANISM Syringoderma phinneyi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17017 LOCUS SYDRG18S 862 bp ds-DNA PLN 24-MAY-1993 DEFINITION Syringoderma phinneyi 18S ribosomal RNA (18S rRNA) gene, partial. ACCESSION L17017 KEYWORDS 18S ribosomal RNA. SOURCE Syringoderma phinneyi DNA. ORGANISM Syringoderma phinneyi Eukaryota; Chromophycota; Phaeophyceae; Syringodermatales; Syringodermataceae. REFERENCE 1 (bases 1 to 862) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>862 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..862 /organism="Syringoderma phinneyi" /sequenced_mol="DNA" BASE COUNT 212 a 184 c 235 g 231 t ORIGIN BASE COUNT 212 a 184 c 235 g 231 t 2411 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- --~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 uuuuuuuac- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGu-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)gcgu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuuau---- -|-------- ---------- ---------- ---------- |uguuccu-g 2821 gcuc(--gag a-)gggcc-g gguaaucugu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC AU(UGCAAUU A)UUGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-c-gug-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gu-----cc ug-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Tao.atomar 3273 bp RNA RNA 24-JAN-191 DEFINITION Taonia atomaria. ACCESSION No information KEYWORDS No information. SOURCE Taonia atomaria. ORGANISM Taonia atomaria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: L17021 LOCUS TITRG18S 862 bp ds-DNA PLN 24-MAY-1993 DEFINITION Taonia atomaria 18S ribosomal RNA (18S rRNA) gene, partial. ACCESSION L17021 KEYWORDS 18S ribosomal RNA. SOURCE Taonia atomaria DNA. ORGANISM Taonia atomaria Eukaryota; Chromophycota; Phaeophyceae; Dictyotales. REFERENCE 1 (bases 1 to 862) AUTHORS Tan,I.H. and Druehl,L.D. TITLE Phylogeny of the Northeast Pacific brown algal (Phaeophycean) orders as inferred from 18S rRNA gene sequences JOURNAL Hydrobiologia (1993) In press STANDARD full automatic FEATURES Location/Qualifiers source 1..862 /organism="Taonia atomaria" /sequenced_mol="DNA" BASE COUNT 210 a 188 c 240 g 224 t ORIGIN BASE COUNT 210 a 188 c 240 g 224 t 2411 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~|~~~~ ~~~(~~~~)[ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~|~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ 301 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-(~~~~~ ~~~)-~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 541 ~~~~~--(~~ ~~~~~~~~)- ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~-( ~~~~~~~)-~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ 661 ~|~~~~~(~~ ~~)~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ 721 (-~~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~)~~~~~~ 781 ~~~~~|~|-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~|~~~~| 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< 901 ~~~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 961 ~~~~)~~~|~ ~~~~~~~~~~ ~~~>~~~~~~ ~~|~~~~~~~ ~~~~~~~~~( ~~~~~~~~~- 1021 |~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1081 ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~|~~~~~~~ <~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~--~~~~~~- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1261 ~~~~~-~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----~ ~~~~~~~~~~ ~~~~~~~~~- 1381 ---~~~~~~~ (~~~~~~--) ~~~~~~~~~~ ~~~~~----- --~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~|~~~~~~~ 1681 ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~UU 1741 G-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 uccuuguac- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CGG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGUGg-- --|ggcu--u acg-c(uuuu ---------- 2401 ---------- ---------- -----)g-gu a--g-g-ua| cu-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uuucga--- -|-------- ---------- ---------- ---------- |cgcuccu-g 2821 gguc(--gag a-)ggcc--g gguaaccuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUC UU(UGUAAUU A)UCGA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGUUucggug aag-auuccg gac-cgugg- cu-a-gcg-c 3061 g-cu------ ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- ------g-gc -gcu----cu gg-cc----- gug-ggaa|g uuaucuaaac 3181 cucaacaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Tri.aequal 3273 bp RNA RNA 24-JAN-191 DEFINITION Tribonema aequale. ACCESSION No information KEYWORDS No information. SOURCE Tribonema aequale. ORGANISM Tribonema aequale. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: M55286 LOCUS TBNRR16S 1829 bp ss-rRNA PLN 05-FEB-1991 DEFINITION Tribonema aequale 16S ribosomal (small subunit) RNA. ACCESSION M55286 KEYWORDS 16S ribosomal RNA; protist. SOURCE Tribonema aequale (strain UTEX 50) ribosomal RNA. ORGANISM Tribonema aequale Eukaryota; Plantae; Thallobionta; Chromophycota; Xanthophyceae; Tribonematales; Tribonemataceae. REFERENCE 1 (sites) AUTHORS Ariztia,E.V., Andersen,R.A. and Sogin,M.L. TITLE A new phylogeny for chromophyte algae using 16S-like rRNA sequences from Mallomonas papillosa (Synurophyceae) and Tribonema aequale (Xanthophyceae) JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 1 to 1829) AUTHORS Bacher,N., Zisman,Y., Berent,E. and Livneh,E. TITLE Isolation and characterization of PKC-L, a new member of the protein kinase C-related gene family specifically expressed in lung, skin, and heart JOURNAL Mol. Cell. Biol. 11, 126-133 (1991) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1829 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 455 a 395 c 504 g 474 t 1 others ORIGIN BASE COUNT 455 a 395 c 504 g 474 t 1445 others ORIGIN 1 |~~~~~~~~C CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUUGUCUCA AA|GAUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaagcgc-c uu-------- 121 ---au-a-cw guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcagua 181 au-aguuuau uugaugg<-- -ucccu-ua- c-u>ACCUGG -AUACCCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---guuucau uc-aa|guuu cugc|CCUAU 601 CAGCUUCG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 G|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AGAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- acu)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CC GG-GCUC(-- uuc)GAGUCU -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AUC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cgcc--(--- 1921 ucuguau--- -------)-- -ggc-uccgu cagcaccuu- -ucGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-AAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAGAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[CCUGCUAA AU-AGCUc-- --|cccg--c acg-c(auuu ---------- 2401 ---------- ---------- -----)gcgu g-ac-g-gg| cgg------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---cG-CUUC 2581 UUAGAGG]-- -|-------- -----GACUU UCA-GU(--- ---------- ----gauua- 2641 )ACUGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 CGCACGCGCG -CUA-CACUG ACACCU---- ---------- ----(----) [gc-aacgag 2761 -cgu------ -|-------- ---------- ---------- ---------- |agaaccu-u 2821 ggcc(--gag a-)ggccc-g gguaaucuuu ugaac]---- ---------- ------GGGU 2881 GUC-GUGAUA GGGACAGAUU AU(UGCAAUU A)UUAA-UCU CGAACGAGGA AUUCCUAGUA 2941 AACGC-GAA( UCAUCAG)UU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUucggug aag-auucgg gac-cgugc- ca-g-cuc-c 3061 g-u------- ---------- ---------- --(ucac--- -)-------- ---------- 3121 ---------- --------gc -ggc----gc ug-gc----- gug-ggaa|c uugucugaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCAG 3241 AAGGAUCA-- ---AGC~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Raphid 3273 bp RNA RNA 13-JAN-1999 DEFINITION Raphidophyceae. ACCESSION No information KEYWORDS No information. SOURCE Raphidophyceae. ORGANISM Raphidophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... .......... .......... 2401 .......... .......... .....).... .........| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Het.akashi 3273 bp RNA RNA 24-FEB-1997 DEFINITION Heterosigma akashiwo.; 18S ribosomal RNA. ACCESSION AB0012 7 KEYWORDS 18S ribosomal RNA. SOURCE Heterosigma akashiwo. ORGANISM Heterosigma akashiwo. REFERENCE 1 (bases 1 to 1741) AUTHORS Uchida,H. TITLE Direct Submission JOURNAL Hidenobu Uchida, University of Tsukuba, Institute of Biological Sciences; Tennodai 1-1-1, Tsukuba, Ibaraki 305, Japan (E-mail: huchida@sakura.cc.tsukuba.ac.jp, Tel :+81-298-53-4533, Fax: +81-298-53-6614) Submitted (19-FEB-1997) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (sites) AUTHORS Mostaert,A.S., Nakayama,T., Uchida,H., Hara,Y. and Watanabe,M.M. JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB001287 BASE COUNT 460 a 341 c 449 g 491 t 1532 others ORIGIN 1 |~~~~~~~~~ ~~~~~(~~~) ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~AUUAAG 61 CCAUGCAUGU CU-AAGU|-- -----|---- ---(----)[ auaaacgacu cu-------- 121 ---au-a-cu guga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauag<-- -ucccu--a- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 ---gguucau uc-aa|guuu cugc|CCUAU 601 CAGCUUCG-G AUGGUAGG-( GUAUUGG)-C CU-ACCAU|G G-CUU-UAAC |GGGUAACGG 661 A|GAA-U(UG GG)GUUCGAU U-CCG|GAGA GGGAGCC(UG AG-AAAC)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- ACA)UAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 AACAAUG-CU AG-GCUU(-- UUA)AAGUCC -G-GC-AAUU GGAAUGAGA| ACAAU(U-UA 961 AAUC)CCU|U -AUCGA-GG- AAC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-A GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- ---GG GA|UAGU-U- 1681 GGGGGUAUU| CGU-AUUCAA -UUG--UC-A GA-G(GU-GA AA---)UUCU -UGGA-U-UU 1741 A-UGG-AAG- A-CGA-A-CU ACUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAU- G(A-UUAG-A -UAC)C-AUC 1861 GUAGU|CUUA -ACC-AUAAA CUAUGCCGAC |UA|-ggga- uuggcgg-u- cguu--(--- 1921 -accua---- -------)-- -gac-uccgu cagcaccuu- -ccGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGAA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGUGAGGAUU GAC-AGA(UU -GAUAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(UUA AUU)CCGUUA ACGAACGAGA CCCCCG|--- ---------- 2341 ----(----- )[ccugcuaa au-agugu-- --|cggu--a aug-c(uucu ---------- 2401 ---------- ---------- -----)gcau u--g-c-cg| uuuc------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ua-cuUC 2581 UUAGAGG]-- -|-------- -----GACUU UCG-GU(--- ---------- ----gacua- 2641 )ACCGAAGGA AGUUGGGGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 UGCACGCGCG -CUA-CACUG AUGCAU---- ---------- ----(----) [gc-aacgag 2761 -uaa------ -|-------- ---------- ---------- ---------- |-cgaccu-u 2821 ugcc(--gga a-)ggcac-g gguaaucuuu ugaac]---- ---------- ------GUGC 2881 AUC-GUGAUA GGGAUAGAUU AU(UGCAAUU A)UUAA-UCU UGAACGAGGA AUUCCUAGUA 2941 AACGC-GAG( UCAUCAG)CU CGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGAUucggug aaa-aucucg gac-uuugg- c--a-uggaa 3061 c-u------- ---------- ---------- ---u-ua--- ---------- ---------- 3121 ---------- ------u-ug -uga----cu ug-cc----- gag-ggaa|g uuauuuaaac 3181 cucaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CC~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Blasto 3273 bp RNA RNA 13-JAN-1999 DEFINITION Blastocystis. ACCESSION No information KEYWORDS No information. SOURCE Blastocystis. ORGANISM Blastocystis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 3273 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .-........ ..-....... 481 .......... .......... .......... .......... .......... .......... 541 ...--..... .......... .......... .......... .......... .......... 601 .......... ........-. ........-. .......... .......... .......... 661 .......... .......... .......... .......... .......... .........- 721 .......... .......... .......... .......... .......... .......... 781 ......-... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......<.. 901 .......... .......... .......... .......... .......|.. ...(...... 961 ..)...|... .......... ..>....... .......... .......... .......-.. 1021 .......... .....|.... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .........- 1201 -......-.. .......-.. .......... .......... .......... .......-.. 1261 ...-..---- .......... .......... .......... .......... .......... 1321 .......... .......... .......... ...----... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 ...-...... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .....|.... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... ........-. .......... .......... 2161 ........]. .......... .......... .......... .......... .......... 2221 .......... .......... ........-. .......... .........- ......-... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... ..|....... (......... .......... 2401 .......... .......... .....).... .))......| .......... .......... 2461 .......... .......... .......... ......(... )......... ..-....... 2521 .......... .......... .......... .......... .........| .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .|........ .......... .......... .......... |......... 2821 .....--... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... ........|| ||| // LOCUS Bla.homi.1 3273 bp RNA RNA 24-JAN-191 DEFINITION Blastocystis hominis. ACCESSION No information KEYWORDS No information. SOURCE Blastocystis hominis. ORGANISM Blastocystis hominis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB023499 LOCUS AB023499 1740 bp DNA PLN 04-JUL-2000 DEFINITION Blastocystis hominis gene for 18S ribosomal RNA. ACCESSION AB023499 VERSION AB023499.1 GI:8918235 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Blastocystis hominis (strain:HE87) DNA. ORGANISM Blastocystis hominis Eukaryota; stramenopiles; Blastocystis. REFERENCE 1 (sites) AUTHORS Arisue,N., Hashimoto,T., Nakamura,Y., Nakamura,G., Nakamura,F., Yoshikawa,H., Kika,K. and Hasegawa,M. TITLE Phylogenetic position of Blastocystis hominis, inferred from multiple molecular sequences data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1740) AUTHORS Hashimoto,T. and Arisue,N. TITLE Direct Submission JOURNAL Submitted (09-FEB-1999) to the DDBJ/EMBL/GenBank databases. Tetsuo Hashimoto, The Institute of Statistical Mathematics; 4-6-7 Minamiazabu, Minato-ku, Tokyo 106-8569, Japan (E-mail:hasimoto@ism.ac.jp, Tel:81-3-5421-8773, Fax:81-3-3446-1695) FEATURES Location/Qualifiers source 1..1740 /organism="Blastocystis hominis" /strain="HE87" /db_xref="taxon:12968" rRNA 1..1740 /note="Phylogenetic position of this organism was determined from multiple sequences containing this sequence." /product="18S ribosomal RNA" BASE COUNT 479 a 300 c 458 g 503 t BASE COUNT 479 a 300 c 458 g 503 t 1533 others ORIGIN 1 |~~~~~~UAC UUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ guaa-aua-u ac-------- 121 ----u-a-gu uugg-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugguga<-- --agug-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGGGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 --<------- -agaaa-gu- -c---c---- ---------- ---------- -------ucu 361 gguga----- ---------- ---------- ---------- -------ggu --|GUGUUUA 421 UUAGA-AUGA A-A---acca u--------- ---------a ugc-(---uu cg-)-gcau- 481 gaua------ ---------- --g-ugagua aua-guaa-c cu--auc--| GUAUC-GC-a 541 u-gc---(-- uuaau---)- ---guaGCGA U>-gagucuu uc-aa|guuu cugc|CCUAU 601 CAGCUUUC-G AUGGUAGU-( AUAUAGG)-C CU-ACCAU|G G-CAG-UAAC |GGGUAACGA 661 A|GAA-U(UU GG)GUUCGAU U-UCG|GAGA GGGAGCC(UG AG-AGAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 CACAAUG-CG GG-ACU-(-- auc)-AGUCU -U-GC-AAUU GGAUUGAGA| ACAAU(G-UA 961 CAAC)UCU|U -AUCGA-UA- AGC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-C GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- <-aagug-ug gguggugcu- -gu--c---- -ugagua--a 1201 c--uu-c-g- guu--ag--- -uca--g--- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ----augau- cacuaccccc |--------- 1321 ----uucca- gu-------- ----auc-ca ---g------ ---------- --u---a--- 1381 ---gugggua (uucacu--) u-ac-uuac- ---------- --------ua cugug----- 1441 ------uguu gguc|--CUU UACUGUGAGA AAAU-UAGAG UGUUC-AA-A G-CAGGCG-U 1501 UU-GC--U-U GAAUAGAUUA GCAUGGAA|U AAUaauugaa gg-cuuuc-- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ----guguuc 1621 -gauu-ugau uggu-u-ugu -ucaug-gaa gca-a-ggUU AAAA>---GG AA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUCAC -UAG--UU-A GA-G(GU-GA AA---)UUCU -CGGA-U-UU 1741 A-UGG-AAG- A-UGA-A-CA AGUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GCUAGGGGAU CGAA--GAG- G(A-UUAG-A -UAC)C-CUC 1861 GUAGU|CUUA -GCU-AUAAA CGAUACCGAC |UA|-gggg- uuaguag-a- gguc--(--- 1921 -aaagu---- -------)-- -guc-uuuau uaguaccuu- -auGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAUAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(CUA AUU)CCGAUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CCU-UUAA CU-AGUG--- --|acgu--g uau--(ugug ---------- 2401 ---------- ---------- -----)-aua u--g-c-gu| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ug-cuUC 2581 UUAUAGG]-- -|-------- -----GACAC UAU-AU(--- ---------- ----guaaa- 2641 )AUGUAGGGA AGCUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 UGCACGCGCG -CGA-CACUG AUCUAU---- ---------- ----(----) [uc-aacgag 2761 ---------- -|-------- ---------- ---------- ---------- |--uggcu-g 2821 gguc(--gag a-)gacuu-g gcaaaucuug ugaaa]---- ---------- ------GUAG 2881 AUC-GUGAUG GGGAUUGAUG CU(UGUAAUU G)UUCA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAA)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCggug aac-acuuug gau-uugag- au-u-ggu-u 3061 g-ucu----- ---------- ---------- --(guaaaa- -)-------- ---------- 3121 ---------- -----gg-au -ggu----ua au-cu----- ggg-agaa|g ucguguaaau 3181 cuuaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUU~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bla.homi.2 3273 bp RNA RNA 24-JAN-191 DEFINITION Blastocystis hominis. ACCESSION No information KEYWORDS No information. SOURCE Blastocystis hominis. ORGANISM Blastocystis hominis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: AB023578 LOCUS AB023578 1740 bp DNA PLN 04-JUL-2000 DEFINITION Blastocystis hominis gene for 18S ribosomal RNA. ACCESSION AB023578 VERSION AB023578.1 GI:8918236 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Blastocystis hominis (strain:HE87) DNA. ORGANISM Blastocystis hominis Eukaryota; stramenopiles; Blastocystis. REFERENCE 1 (sites) AUTHORS Arisue,N., Hashimoto,T., Nakamura,Y., Nakamura,G., Nakamura,F., Yoshikawa,H., Kika,K. and Hasegawa,M. TITLE Phylogenetic Position of Blastocystis hominis, Inferred from Multiple Molecular Sequences Data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1740) AUTHORS Hashimoto,T. and Arisue,N. TITLE Direct Submission JOURNAL Submitted (10-FEB-1999) to the DDBJ/EMBL/GenBank databases. Tetsuo Hashimoto, The Institute of Statistical Mathematics; 4-6-7 Minamiazabu, Minato-ku, Tokyo 106-8569, Japan (E-mail:hasimoto@ism.ac.jp, Tel:81-3-5421-8773, Fax:81-3-3446-1695) FEATURES Location/Qualifiers source 1..1740 /organism="Blastocystis hominis" /strain="HE87" /db_xref="taxon:12968" rRNA 1..1740 /product="18S ribosomal RNA" BASE COUNT 480 a 302 c 458 g 500 t BASE COUNT 480 a 302 c 458 g 500 t 1533 others ORIGIN 1 |~~~~~~UAC UUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GC-AAGU|-- -----|---- ---(----)[ guaa-aua-u ag-------- 121 ----u-a-gu uugg-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugguga<-- --agug-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGGGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 --<------- -agaaa-gu- -c---c---- ---------- ---------- -------ucu 361 gguga----- ---------- ---------- ---------- -------ggu --|GUGUUUA 421 UUAGA-AUGA A-A---acca c--------- ---------a ugc-(---uu cg-)-gcau- 481 gaua------ ---------- --g-ugagua aua-guaa-c cu--auc--| GUAUC-GC-a 541 u-gc---(-- uuaau---)- ---guaGCGA U>-gagucuu uc-aa|guuu cugc|CCUAU 601 CAGCUUUC-G AUGGUAGU-( AUAUGGG)-C CU-ACCAU|G G-CAG-UAAC |GGGUAACGA 661 A|GAA-U(UU GG)GUUCGAU U-UCG|GAGA GGGAGCC(UG AG-AGAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 CACAAUG-CG GG-ACU-(-- auc)-AGUCU -U-GC-AAUU GGAUUGAGA| ACAAU(G-UA 961 CAAC)UCU|U -AUCGA-UA- AGC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-C GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- <-aagug-ug gguggugcu- -gu--c---- -ugagua--a 1201 c--uu-c-g- guu--ag--- -uca--g--- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ----augau- cacuaccccc |--------- 1321 ----uucca- gu-------- ----auc-ca ---g------ ---------- --u---a--- 1381 ---gugggua (uucacu--) u-ac-uuac- ---------- --------ua cugug----- 1441 ------uguu gguc|--CUU UACUGUGAGA AAAU-UAGAG UGUUC-AA-A G-CAGGCG-U 1501 UU-GC--U-U GAAUAGAUUA GCAUGGAA|U AAUaauugaa gg-cuuuc-- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ----guguuc 1621 -gauu-ugau uggu-u-ugu -ucaug-gaa gca-a-ggUU AAAA>---GG AA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUCAC -UAG--UU-A GA-G(GU-GA AA---)UUCU -CGGA-U-UU 1741 A-UGG-AAG- A-UGA-A-CA AGUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GCUAGGGGAU CGAA--GAG- G(A-UUAG-A -UAC)C-CUC 1861 GUAGU|CUUA -GCU-AUAAA CGAUACCGAC |UA|-gggg- uuaguag-a- gguc--(--- 1921 -aaagu---- -------)-- -guc-uuuau uaguaccuu- -auGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAUAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |CGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(CUA AUU)CCGAUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CCU-UUAA CU-AGUG--- --|acgu--g uau--(ugug ---------- 2401 ---------- ---------- -----)-aua u--g-c-gu| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ug-cuUC 2581 UUAUAGG]-- -|-------- -----GACAC UAU-AU(--- ---------- ----guaaa- 2641 )AUGUAGGGA AGCUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 UACACGCGCG -CGA-CACUG AUCUAU---- ---------- ----(----) [uc-aacgaa 2761 ---------- -|-------- ---------- ---------- ---------- |--uggcu-g 2821 gguc(--gag a-)gacuu-g gcaaaucuug ugaaa]---- ---------- ------GUAG 2881 AUC-GUGAUG GGGAUUGAUG CU(UGUAAUU G)UUCA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAA)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCggug aac-acuuug gau-uugag- au-u-ggu-u 3061 g-ucu----- ---------- ---------- --(guaaaa- -)-------- ---------- 3121 ---------- -----gg-au -ggu----ua au-cu----- ggg-agaa|g ucguguaaau 3181 cuuaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUU~~ ~~~~~~~(~~ ~~)~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bla.homi.3 3273 bp RNA RNA 24-JAN-191 DEFINITION Blastocystis hominis. ACCESSION No information KEYWORDS No information. SOURCE Blastocystis hominis. ORGANISM Blastocystis hominis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U51151 LOCUS BHU51151 1770 bp DNA PLN 05-JUN-1996 DEFINITION Blastocystis hominis 16S-like ribosomal RNA gene. ACCESSION U51151 VERSION U51151.1 GI:1354277 KEYWORDS . SOURCE Blastocystis hominis strain=Nand. ORGANISM Blastocystis hominis Eukaryota; stramenopiles; Blastocystis. REFERENCE 1 (bases 1 to 1770) AUTHORS Silberman,J.D., Sogin,M.L., Leipe,D.D. and Clark,C.G. TITLE Human parasite finds taxonomic home JOURNAL Nature 380 (6573), 398 (1996) MEDLINE 96180115 REFERENCE 2 (bases 1 to 1770) AUTHORS Silberman,J.D. TITLE Direct Submission JOURNAL Submitted (11-MAR-1996) Jeffrey D. Silberman, Center for Molecular Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA FEATURES Location/Qualifiers source 1..1770 /organism="Blastocystis hominis" /strain="Nand" /specific_host="Homo sapiens" /db_xref="taxon:12968" /note="ATCC# 50177" primer_bind 1..25 /note="5' PCR amplification primer" rRNA 1..1770 /product="16S-like ribosomal RNA" primer_bind complement(1747..1770) /note="3' PCR amplification primer" BASE COUNT 484 a 308 c 470 g 508 t BASE COUNT 484 a 308 c 470 g 508 t 1503 others ORIGIN 1 |~~~GCUUAU CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ guaa-aua-u ac-------- 121 ----u-a-gu uugg-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugguga<-- --agug-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGGGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 --<------- -agaaa-gu- -c---c---- ---------- ---------- -------ucu 361 gguga----- ---------- ---------- ---------- -------ggu --|GUGUUUA 421 UUAGA-AUGA A-A---acca u--------- ---------a ugc-(---uu cg-)-gcau- 481 gaua------ ---------- --g-ugagua aua-guaa-c cu--auc--| GUAUC-GC-a 541 u-gc---(-- uuaau---)- ---guaGCGA U>-gagucuu uc-aa|guuu cugc|CCUAU 601 CAGCUUUC-G AUGGUAGU-( AUAUGGG)-C CU-ACCAU|G G-CAG-UAAC |GGGUAACGA 661 A|GAA-U(UU GG)GUUCGAU U-UCG|GAGA GGGAGCC(UG AG-AGAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)CAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 CACAAUG-CG GG-ACU-(-- auc)-AGUCU -U-GC-AAUU GGAUUGAGA| ACAAU(G-UA 961 CAAC)UCU|U -AUCGA-UA- AGC>CAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-C GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- <-aagug-ug ggugaucgcu ---guug--- -ugag----a 1201 c--uu-c-g- gu--cucucg a-ca--g--- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ------uaa- -gucaccccc |--------- 1321 ----uucca- gu-------- ----auc-ca ---g------ ---------- --u---a--- 1381 ---gugggua (uucagu--) u-ac-uuac- ---------- --------ua cugug----- 1441 ------uguu gguc|--CUU UACUGUGAGA AAAU-UAGAG UGUUC-AA-A G-CAGGCG-U 1501 UU-GC--U-U GAAUAGAUUA GCAUGGAA|U AAUaauugaa gg-cuuuc-- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ----guguuc 1621 -gauu-ugau uggu-u-ugu -ucaug-gaa gca-a-ggUU AAAA>---GG AA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUCAC -UAG--UU-A GA-G(GU-GA AA---)UUCU -CGGA-U-UU 1741 A-UGG-AAG- A-UGA-A-CA AGUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GCUAGGGGAU CGAA--GAG- G(A-UUAG-A -UAC)C-CUC 1861 GUAGU|CUUA -GCU-AUAAA CGAUACCGAC |UA|-gggg- uuaguag-a- gguc--(--- 1921 -aaagu---- -------)-- -guc-uuuau uaguaccuu- -auGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUU GAC-AGA(UU -GAUAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (GUGA)-UUU GUCUGG(CUA AUU)CCGAUA ACGAACGAGA CCUCCG|--- ---------- 2341 ----(----- )[CCU-UUAA CU-AGUG--- --|acgu--g uau--(ugug ---------- 2401 ---------- ---------- -----)-aua u--g-c-gu| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---ug-cuUC 2581 UUAUAGG]-- -|-------- -----GACAC UAU-AU(--- ---------- ----guaaa- 2641 )AUGUAGGGA AGCUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UUCUGGGC 2701 UGCACGCGCG -CGA-CACUG AUCUAU---- ---------- ----(----) [uc-aacgag 2761 ---------- -|-------- ---------- ---------- ---------- |--uggcu-g 2821 gguc(--gag a-)gacuu-g gcaaaucuug ugaaa]---- ---------- ------GUAG 2881 AUC-GUGAUG GGGAUUGAUG CU(UGUAAUU G)UUCA-UCA UGAACGAGGA AUUCCUAGUA 2941 AACGC-AAG( UCAUCAA)CU UGCAU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCggug aac-acuuug gau-uugag- au-u-ggu-u 3061 g-ucu----- ---------- ---------- --(guaaaa- -)-------- ---------- 3121 ---------- -----gg-au -ggu----ua au-cu----- ggg-agaa|g ucguguaaau 3181 cuuaucaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Blasto.sp. 3273 bp RNA RNA 24-JAN-191 DEFINITION Blastocystis sp.. ACCESSION No information KEYWORDS No information. SOURCE Blastocystis sp. ORGANISM Blastocystis sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 3273) Corresponding GenBank entry: U51152 LOCUS BSU51152 1778 bp rRNA PLN 05-JUN-1996 DEFINITION Blastocystis sp. 16S-like ribosomal RNA gene. ACCESSION U51152 VERSION U51152.1 GI:1354278 KEYWORDS . SOURCE Blastocystis sp. strain=NIH:1295:1. ORGANISM Blastocystis sp. Eukaryota; stramenopiles; Blastocystis. REFERENCE 1 (bases 1 to 1778) AUTHORS Silberman,J.D., Sogin,M.L., Leipe,D.D. and Clark,C.G. TITLE Human parasite finds taxonomic home JOURNAL Nature 380 (6573), 398 (1996) MEDLINE 96180115 REFERENCE 2 (bases 1 to 1778) AUTHORS Silberman,J.D. TITLE Direct Submission JOURNAL Submitted (11-MAR-1996) Jeffrey D. Silberman, Center for Molecular Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA FEATURES Location/Qualifiers source 1..1778 /organism="Blastocystis sp." /strain="NIH:1295:1" /specific_host="Guinea-pig" /db_xref="taxon:46767" /note="ATCC# 50578" primer_bind 1..25 /note="5' PCR amplification primer" rRNA 1..1778 /product="16S-like ribosomal RNA" primer_bind complement(1755..1778) /note="3' PCR amplification primer" BASE COUNT 527 a 290 c 432 g 529 t BASE COUNT 527 a 290 c 432 g 529 t 1495 others ORIGIN 1 |~~~GCUUAU CUGGU(UGA) UCCU|GCCAG UAGUCA-UAC GCUCGUCUCA AA|GAUUAAG 61 CCAUGCAUGU GU-AAGU|-- -----|---- ---(----)[ auaa-aua-u uu-------- 121 ----a-a-cu uuga-a]--- --------|- --ACU|-GCG AAUGGCUCAU UAUAUcaguu 181 au-aguuuau uugauga<-- --aaag-ua- c-u>ACUUGG -AUAACCGUA G(U-AAUU)C 241 UAGAGCUAA- UACAUG---- ----(----) ---------- -------(-- --)--|---- 301 --<------- -auaaa-a-- ---------- ---uccucga ---------- ------cuuu 361 gaaga----- ---------- ---------- ---------- -------ggu --|GUAUUUA 421 UUAGA-AUGA A-A---ccaa u--------- ---------a gac-(---uu cg-)-gucu- 481 guuu------ ---------- --g-ugagua aua-auaa-c ua--auc--| GUAUC-GC-a 541 u-gc---(-- uuag----)- ---guaGCGA U>-augucuu uc-aa|guuu cugc|CCUAU 601 CAGCUUUG-G AUGGUAGU-( GUAUUGG)-A CU-ACCAU|G G-CAG-UAAC |GGGUAACGA 661 A|GAA-U(UU GG)GUUCGAU U-UCG|GAGA GGGAGCC(UG AG-AGAU)GG CUACCACAUC 721 (-CAAG-)GA A-GGCAGCA| GGC--GC-GU AAAUUACCC- AAUCCU-G(- aca)UAGGG- 781 A-GGU|A|-G UGACAAUAAA U--------- -----(---- )--------- ----|----| 841 ---------- ---------- --(------- )--------- ---------- ---------< 901 CACAAUG-CG GA-ACU-(-- auu)-AGUUU -U-GC-AAUU GGAUUGAGA| ACAAU(G-UA 961 CAAA)UGU|U -AUCGA-UA- AAC>AAUUGG AG|GGCAA-G UC-UGGU-G( CCAGCAGCC- 1021 |GCGGUAA)U UCCA-G-|CU CCAAUAGCGU A|UAUUAA-C GUUG--UUGC AG|UUAAAAA 1081 GCUCGUAGUU G|-------- --|------- ---------- ---(-----) ---------- 1141 ---------- --|------- <-aauug--a agugaacuug ggu------- -ugaugugau 1201 c--uu-c-g- g--------- ---------- ---------- -------aug acaugaauca 1261 aaguug---- ---------- ---------- ---------- ---acu--cu |--------- 1321 ----uucca- aa-------- ----guc-aa ---u------ ---------- --a---c--- 1381 ---auuggua (uucauu--) u-au-cuuu- ---------- --------gu a-uug----- 1441 -----uguuu gguc|--AUU UACUGUGAGA AAAU-UAGAG UGUUC-AA-A G-CAGACG-U 1501 UU-GU--U-U GAAUACAUUA GCAUGGAA|U AAUcauauau gg-cuuuc-- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ----auguu- 1621 -gauu-ugau uggu-u-uga -auaug-gaa gca-a-gaUU AAAA>---GG GA|CAGU-U- 1681 GGGGGUAUU| CAU-AUUCAA -UAG--UC-A GA-G(GU-GA AA---)UUCU -GGGA-U-UU 1741 A-UGG-AAG- A-UGA-A-CA AGUGC(-GAA A)GC|AUUUA CCAA|G-GAU GUUUUCAUUA 1801 AU|CA-AGAA CGAAA----- GUUAGGGGAU CGAA--GAG- G(A-UUAG-A -UAC)C-CUC 1861 GUAGU|CUUA -ACU-AUAAA CGAUACCGAC |UA|-gggg- uuaguaa-u- gguc--(--- 1921 -auugu---- -------)-- -gug-uuuac uaguaccuu- -auGA(-GAA A)UCA--AAG 1981 UC-UUUGGGU |-U|CCGGGG -GGAGUAU-G GUC(GCAA)G GCU-G-AAA- -CUUAAAGGA 2041 AUUG|ACGGA AGGGCACCAC -CAGGAGU|G GAGCCUGCG| GCUUAAUUUG (ACUCAACA) 2101 CGGG-GAAAC UUACCAGGUC [CAG-ACAU- AGGAAGGAUA GAC-AGA(-a -caaAG-C)u 2161 cuuucuugau ucuauggg]- -------|-- ---------- --(----)-- ---------- 2221 (----)---- |--------- |UGGU-GGUG CAUG|GCC-| GU-UCUUA|G UUGGU|GGA- 2281 (UUGA)-UUU GUCAGG(CUA AUU)CCGAUA ACGAACGAGA CCUCCU|--- ---------- 2341 ----(----- )[CCUACUAA AU-AGAU--- --|auau--a uau-c(uuug ---------- 2401 ---------- ---------- -----)gaua u--auu-gu| ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------| ---au-cuUC 2581 UUAGAGG]-- -|-------- -----GACAC UAU-AC(--- ---------- ----acaaa- 2641 )GUGUAGGGA AGCUGGAGGC AAUAACAGGU CUGUGA|UGC C|CU-UAGAU G-UCCUGGGC 2701 UGCACGCGCG -CGA-CACUG AUUGAU---- ---------- ----(----) [uc-aacaag 2761 ---------- -|-------- ---------- ---------- ---------- |--uagcu-g 2821 gguc(--gag a-)gacuu-g gcaacucuuu ugaaa]---- ---------- ------AUCA 2881 AUC-GUGAUG GGGAUUGAUG UU(UGUAAUU A)-UCA-UCA UGAACGAGGA AUUCCUAGUA 2941 AAUGC-AAG( UCAUCAA)CU UGCGU-UGAU UACGU-CCCU GCCCUU|UGU ACACACCGCC 3001 CGUCGCACCU ACCGAUUGAA UGGUCCgaug aac-acuuug gau-uuugau au-a-gua-a 3061 u-ucu----- ---------- ---------- --(uugc--- -)-------- ---------- 3121 ---------- -----gg-aa -uua----uu cuauu----- gaa-agaa|g uuguguaaau 3181 cuuaccaUUU AGAGGAAGGU GAAG-UCGUA ACAAGGUUU- CCGUAGG(UG AA)CCUGCGG 3241 AAGGAUCA~~ ~~~~~~~~~~ ~~~~~~~~|| ||| //