Last modified on 29 August 2011.
NOTE: This section is under development.
Data Categories:
Sequence-Level Data: [Back to Top]
- FUTURE: sequences
- Current Sequence Metadata
- FUTURE: intron sites
- Nucleotide Modifications
Alignment-Level Data: [Back to Top]
- Sequence Alignments:
- FUTURE: alignment metadata
- FUTURE: intron sites
- Sequence Conservation Diagrams
- Nucleotide Frequency
- Structural Statistics
- Signature Nucleotides
- RNA2DMap
Structure-Level Data: [Back to Top]
- Reference Structure Diagrams
- Secondary Structure (Covariation) Model Diagrams:
- rRNA Structure/Basepair Information
- FUTURE: 3D structures
- Structural Statistics
- Comparison of Secondary Structure Model to 3D Structure
- RNA2DMap
- Structure Motif Data
Gutell Lab Manuscript Links: [Back to Top]
- The Accuracy of Ribosomal RNA Comparative Structure Models
- Modeling a Minimal Ribosome Based on Comparative Sequence Analysis
- Distribution of rRNA Introns in the Three-Dimensional Structure of the Ribosome
- The Exon Context and Distribution of Euascomycetes rRNA Spliceosomal Introns
- Fragmentation of Ribosomal RNA Genes in Oyster Mitochondrial Genomes
- Predicting U-turns in Ribosomal RNA with Comparative Sequence Analysis
- A Story: Unpaired Adenosines in Ribosomal RNAs
- AA.AG@Helix.Ends: A:A and A:G Base-pairs at the Ends of 16 S and 23 S rRNA Helices
- The Lonepair Triloop: A New Motif in RNA Structure
- Diversity of Basepair Conformations and Their Occurrence in rRNA Structure and RNA Structural Motifs
- The UAA/GAN Internal Loop Motif: A New RNA Structural Element That Forms a Cross-strand AAA Stack and Long-range Tertiary Interactions
- An Analysis of Large rRNA Sequences Folded by a Thermodynamic Method
- Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction
- Phylogenetic Analysis of Molluscan Mitochondrial LSU rDNA Sequences and Secondary Structures
- Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae)