Last modified on 01 August 2007.
| 1. The Tables of the Basepairs and Their Conformations, Frequencies, Nucleotide Conservations, and Associations in Structural Motifs, Triples, and Quadruples in the High-Resolution rRNA Crystal Structures | A: T. thermophilus 16S rRNA | 16S rRNA |
|---|---|---|
| B: H. marismortui 23S rRNA | 23S rRNA | |
| C: H. marismortui 5S rRNA | 5S rRNA | |
| 2. The Secondary Structure Diagrams with Secondary and Tertiary Interactions and Basepair Conformations | A: T. thermophilus 16S rRNA | small: PS | PDF large: PS | PDF |
| B: H. marismortui 23S rRNA | 5'-half small: PS | PDF large: PS | PDF 3'-half small: PS | PDF large: PS | PDF merged PS | PDF |
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| C: H. marismortui 5S rRNA | small: PS | PDF large: PS | PDF |
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| 3. The Schematic Secondary Structure Diagrams with Structural Motifs | Schematic diagrams with all motifs in the rRNA crystal structures | PS | PDF |
| 4. The Plots for Nucleotide Conservations Involved in the Basepairs in the rRNA Crystal Structures | 16S and 23S rRNAs | PS | PDF |
| 5S rRNA | PS | PDF | |
| 5. The Supplementary Data | Topological arrangements of the basepair conformations for the 10 basepair groups based on the Lee-Gutell system | PS | PDF |
| Schematic secondary structure diagrams with RNA structural motifs | PS | PDF | |
| 6. RNA2DMap (Secondary Structure Java Applet) for the Crystal Structures (About RNA2DMap) | A: T. thermophilus 16S rRNA | 16S rRNA |
| B: H. marismortui 23S rRNA | 23S rRNA | |
| C: H. marismortui 5S rRNA | 5S rRNA | |
| D: E. coli 70S ribosomal subunit | 70S (#1) | 70S (#2) (Java Applet Version) |
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| 7. Translation Tables (E. coli to Crystal Structure Organism) for the Crystal Structures (CSV format: [E. coli position #] [E. coli nt],[Crystal position #] [crystal nt], with "-----" representing non-homologous positions) | A: T. thermophilus 16S rRNA | 16S rRNA |
| B: H. marismortui 23S rRNA | 23S rRNA | |
| C: H. marismortui 5S rRNA | 5S rRNA |
One letter codes for structural motifs (for "Tables of the Basepairs..."):
- a: AA.AG@helix.ends
- t: Tandem GA's
- e: E loops
- l: E-like loops
- g: GGA/GAA motifs
- k: K-turns
- c: C loops
- h: H-turns
- 4: Tetraloops
- 3: Lonepair triloops
- u: UAA/GAA motifs
- v: Lone U:A basepairs at helix ends
