| Small Subunit | ||||
| Helices Lost 2 | Deletion 3 | Gap Distance (Å) | Sequence Length 4 | PMove 5 |
|---|---|---|---|---|
| SH5-14 | 51-82, 87-364 | 86, 80 | None | 1.0 |
| (4nt loop) 6 | ||||
| SH16-17 | 408-499 | 17 | 3nt | 0.3 |
| SH21-22 | 588-672, 736-760 | 65, 43 | None | 1.0 |
| (690 region) | ||||
| SH25-26a | 814-863, 867-879 | 35, 36 | None | 1.0 |
| (3nt loop) | ||||
| SH33 & SH35 | 996-1045 | 16 | NA | 1.0 |
| SH37 | 1084-1089, 1096-1102 | 25, 17 | None | 1.0 |
| (6nt loop) | ||||
| SH39 & SH40 | 1113-1163, 1174-1191 | 35, 35 | 1nt | 1.0 |
| (end of SH40) | ||||
| SH41 | 1243-1265, 1269-1294 | 35, 29 | None | 1.0 |
| (3nt loop) | ||||
| LH44 | 1416-1449, 1453-1484 | 83, 97 | None | 1.0 |
| (3nt loop) | ||||
| Anti-Shine-Delgarno | 1536-1542 | ? | None | ---- |
| Large Subunit | ||||
| Helices Lost | Deletion | Gap Distance (Å) | Sequence Length2 | PMove3 |
| LH1-25 | 1-562 | NA | 22nts (5' end) | ---- |
| LH28-31 | 595-662 | Loop 7 | 4nt | ---- |
| LH34 | 698-713, 717-763 | 26, 26 | None | 1.0 |
| (3nt loop) | ||||
| LH37-42 & LH45 | 818-1050, 1109-1185 | 91, 100 | 35nt, 13nt | 1.0 |
| (GTPase region) | ||||
| LH46 | 1206-1222, 1227-1240 | 36, 19 | None | 1.0 |
| (4nt loop) | ||||
| LH47-61 | 1276-1656 | 27 | 29nt | 0.2 |
| LH62-63 | 1668-1761 | 30 | None | 1.0 |
| LH66 | 1798-1806, 1811-1821 | 26, 30 | None | 1.0 |
| (4nt loop) | ||||
| LH68 | 1844-1868, 1872-1896 | 51, 60 | None | 1.0 |
| (3nt loop) | ||||
| LH76-79 | 2092-2227 | Loop 7 | 4nts | ---- |
| LH81-88 | 2259-2421 | 26 | 24nts | 0.2 |
| LH94 | 2627-2645 | 43 | 8nts | 1.0 |
| (connects to SRL) | ||||
| LH96 | 2679-2728 | Loop 7 | 5nts | ---- |
| LH97-101 | 2732-2904 | NA | 20nts (3' end) | ---- |
1 Deletions of 5 nt or less are not included.
2 SH and LH are used to represent small subunit helices and large subunit helices respectively.
3 The residues that are deleted from the C. elegans sequence are listed with E. coli numbering.
4 Sequence length represents the unassigned sequence from the C. elegans structure that is not represented by a homologous region in the E. coli secondary structure and is therefore available to close the gap.
5 Probability that movement would be required to compensate for the deletion (see text for explanation).
6 The identity shown in red is the region that would need to move to compensate for the deletion.
7 Gap distance is not important because the deletion is at the end of a helix and can easily be closed by a new loop.
