Last modified on 11 May 2000.
U-Turn | Pattern | B | A | C | E |
---|---|---|---|---|---|
23S:215-223 [C (Multi-Stem)] | GAAAAGAAA | 43.9 | 38.9 | 84.0 | 72.7 |
GAAGAGAAA | 26.9 | 25.0 | 4.0 | 4.5 | |
GAAAAUAAA | 5.9 | -- | 3.0 | -- | |
GAGAAGAAA | 4.8 | 19.4 | -- | 11.1 | |
GAACAGAAA | 0.7 | 8.3 | -- | -- | |
GAGGAGAAA | 0.7 | 8.3 | -- | 1.0 | |
GAAUAGAAA | 0.7 | -- | 5.0 | -- | |
gap | 4.1 | -- | -- | 2.5 | |
Other | 12.6 | -- | 4.0 | 8.2 | |
N | 16 | 5 | 8 | 18 | |
Seq | 271 | 36 | 100 | 198 | |
23S:306-311 [B (Hairpin)] | UGGAAA | 69.8 | 8.3 | -- | 22.7 |
UGGGAA | 15.1 | -- | -- | 4.5 | |
UGGAAU | 1.4 | 41.7 | 5.0 | 0.5 | |
UGGAAC | 2.9 | 41.7 | 1.0 | -- | |
UGAAAU | -- | 5.6 | -- | -- | |
CGGAAG | -- | -- | -- | 19.1 | |
UUGAUG | -- | -- | -- | 10.9 | |
AGGAAU | -- | -- | -- | 7.3 | |
UUUCUU | -- | -- | -- | 5.0 | |
gap | 1.8 | -- | 92.0 | 4.1 | |
Other | 9.0 | 2.7 | 2.0 | 25.9 | |
N | 12 | 5 | 4 | 42 | |
Seq | 278 | 36 | 100 | 220 | |
23S:446-460 [I (Multi-Stem)] | GAUAGUGAACCAGUA | 48.2 | -- | -- | -- |
UAUAGUGAACCAGUA | 11.0 | -- | -- | -- | |
GAUAGUGAACAAGUA | 5.7 | 13.5 | 1.0 | 0.9 | |
GAUAGCGAACAAGUA | 2.5 | 35.1 | 3.0 | 46.9 | |
GAUAGCGAACUAGUA | -- | 18.9 | 6.0 | -- | |
GAUAGCAAACAAGUA | -- | 8.1 | -- | 18.0 | |
GAUAGCGCAAUAGUA | -- | 5.4 | -- | -- | |
GAUAGCGAAAUAGUA | -- | -- | 25.0 | -- | |
GAUAGUGAAAUAGUA | -- | -- | 14.0 | -- | |
GAUAGUGAAGUAGUA | -- | -- | 9.0 | -- | |
GAUAGCGAAGUAGUA | -- | -- | 8.0 | -- | |
GAUAGUGAAACAGUA | -- | -- | 5.0 | -- | |
gap | 10.3 | 8.1 | 11.0 | 9.6 | |
Other | 22.3 | 10.9 | 18.0 | 24.6 | |
N | 22 | 9 | 21 | 36 | |
Seq | 282 | 37 | 100 | 228 | |
23S:463-466 [A (Hairpin)] | GUGA | 94.0 | 97.3 | 44.0 | 62.3 |
GCGA | 2.5 | 2.7 | 44.0 | 23.4 | |
ACGA | -- | -- | 9.0 | 1.3 | |
GUAA | 2.5 | -- | -- | 10.4 | |
gap | 0.7 | -- | -- | 0.4 | |
Other | 0.3 | -- | 3.0 | 2.2 | |
N | 4 | 2 | 6 | 9 | |
Seq | 282 | 37 | 100 | 231 | |
23S:475-483 [C (Multi-Stem)] | UGAAAAGAA | 30.9 | 35.1 | 68.0 | 31.5 |
UGAAAAGCA | 28.4 | 37.8 | -- | 11.9 | |
CGAAAAGAA | 24.5 | -- | -- | -- | |
UGAAAAGUA | 10.6 | 13.5 | 5.0 | 3.7 | |
UGCAAAGUA | -- | 10.8 | -- | -- | |
UGAAAUGAA | -- | -- | 5.0 | -- | |
UAAAAAGAA | -- | -- | 5.0 | -- | |
UGAAAAGGA | -- | -- | -- | 16.0 | |
UUAAAAGCA | -- | -- | -- | 8.2 | |
UGAAAAGUU | -- | -- | -- | 5.0 | |
gap | 2.1 | 2.8 | -- | 18.3 | |
Other | 3.5 | -- | 17.0 | 5.4 | |
N | 9 | 4 | 13 | 12 | |
Seq | 282 | 37 | 100 | 219 | |
23S:511-515 [C (Internal)] | UGAAA | 99.3 | 97.3 | 96.0 | 91.3 |
UGAAG | -- | -- | -- | 5.0 | |
gap | -- | -- | 1.0 | -- | |
Other | 0.7 | 2.7 | 3.0 | 3.7 | |
N | 3 | 2 | 3 | 8 | |
Seq | 282 | 37 | 100 | 219 | |
23S:567-574 [E (Hairpin)] | UUUGUAGA | 29.1 | -- | -- | -- |
UUUGUAUA | 26.6 | -- | -- | -- | |
UUUGCAUG | 18.1 | -- | -- | -- | |
UUUGAAGA | 8.2 | 2.7 | -- | -- | |
UUUGCAUA | 6.4 | -- | -- | -- | |
CUUGAAAC | -- | 40.6 | -- | 95.2 | |
UUUGAAAA | -- | 18.9 | -- | -- | |
UUCGAAAA | -- | 8.1 | -- | -- | |
CUAGAAAC | -- | 8.1 | -- | -- | |
UCUGAAGA | -- | 5.4 | -- | -- | |
CCUGAAAC | -- | 5.4 | -- | -- | |
CUCGAAAC | -- | 5.4 | -- | 2.4 | |
GUUGAAGA | 1.4 | 2.7 | 95.0 | -- | |
gap | 1.8 | -- | -- | 0.5 | |
Other | 8.4 | 2.7 | 5.0 | 1.9 | |
N | 18 | 10 | 3 | 5 | |
Seq | 282 | 37 | 100 | 207 | |
23S:630-633 [A (Hairpin)] | GAAA | 97.5 | 100.0 | 96.0 | 61.9 |
GAAG | -- | -- | -- | 23.3 | |
gap | 1.8 | -- | -- | 2.5 | |
Other | 0.7 | -- | 4.0 | 12.3 | |
N | 3 | 1 | 4 | 14 | |
Seq | 282 | 37 | 100 | 202 | |
23S:714-717 [F (Hairpin)] | UAAC | 49.6 | -- | 45.0 | 0.5 |
UAAG | 23.4 | -- | 1.0 | -- | |
UAAA | 19.5 | -- | 22.0 | -- | |
GAAA | -- | 78.4 | -- | 95.6 | |
UUAC | -- | 8.1 | -- | -- | |
GCCA | -- | 5.4 | -- | -- | |
AACA | -- | 5.4 | -- | 2.0 | |
UGAA | 1.1 | -- | 13.0 | -- | |
UAAU | 4.6 | -- | 7.0 | -- | |
UGAU | -- | -- | 5.0 | -- | |
gap | -- | -- | -- | 0.5 | |
Other | 1.8 | 2.7 | 7.0 | 1.4 | |
N | 10 | 5 | 9 | 6 | |
Seq | 282 | 37 | 100 | 205 | |
23S:745-752 [B (Hairpin)] | GUUGAAAA | 78.7 | -- | 88.0 | -- |
CGUGCAAU | -- | 27.0 | -- | -- | |
UCCUACAA | -- | 16.2 | -- | -- | |
CGUGCAAA | -- | 13.5 | -- | 96.6 | |
GUCGUGCA | -- | 8.1 | -- | -- | |
ACCGCGAA | -- | 5.4 | -- | -- | |
UGUGCAAA | -- | 5.4 | -- | -- | |
GAUGUGAA | -- | 5.4 | -- | -- | |
CGUGCAAC | -- | 5.4 | -- | 0.5 | |
GUUGAAGA | -- | -- | 8.0 | -- | |
gap | -- | -- | -- | -- | |
Other | 21.3 | 13.6 | 4.0 | 2.9 | |
N | 17 | 13 | 5 | 7 | |
Seq | 282 | 37 | 100 | 205 | |
23S:780-784 [B (Hairpin)] | GAAAG | 65.9 | 59.5 | -- | 98.5 |
GAAAU | 30.1 | -- | 100.0 | -- | |
AAAAG | -- | 27.0 | -- | -- | |
GAAAA | 3.2 | 5.4 | -- | -- | |
CAAAA | -- | 5.4 | -- | -- | |
gap | 0.4 | -- | -- | 0.5 | |
Other | 0.4 | 2.7 | -- | 1.0 | |
N | 4 | 5 | 1 | 3 | |
Seq | 279 | 37 | 100 | 205 | |
23S:818-821 [C (Multi-Stem)] | GAAA | 99.2 | 56.8 | 100.0 | 10.8 |
GAAG | -- | 29.7 | -- | 87.3 | |
GAGA | -- | 5.4 | -- | -- | |
GAAU | -- | 5.4 | -- | 0.9 | |
gap | 0.8 | -- | -- | 0.5 | |
Other | -- | 2.7 | -- | 0.5 | |
N | 1 | 5 | 1 | 4 | |
Seq | 243 | 37 | 100 | 213 | |
23S:1065-1073 [E (Hairpin)] | UUAGAAGCA | 87.7 | 51.4 | 70.0 | -- |
UUAGAGGCA | 5.3 | -- | -- | -- | |
CCAGCAGCA | -- | 21.6 | -- | -- | |
CUAACAGCA | -- | 16.2 | -- | -- | |
UCAGAAGUA | -- | 5.4 | -- | -- | |
CUAGAAGCA | 1.2 | -- | 26.0 | -- | |
AUGGAAGUC | -- | -- | -- | 78.7 | |
AUGGAAGUU | -- | -- | -- | 10.4 | |
gap | 0.4 | -- | 1.0 | 0.5 | |
Other | 5.4 | 5.4 | 3.0 | 10.4 | |
N | 6 | 6 | 4 | 18 | |
Seq | 244 | 37 | 100 | 211 | |
23S:1083-1085 [D (Hairpin)] | UUA | 78.2 | 89.2 | 44.0 | 89.6 |
GGA | 13.3 | -- | 32.0 | -- | |
CCA | 4.8 | 10.8 | 9.0 | 8.1 | |
AAA | 3.2 | -- | 14.0 | -- | |
gap | -- | -- | -- | 1.4 | |
Other | 0.5 | -- | 1.0 | 0.9 | |
N | 5 | 2 | 5 | 3 | |
Seq | 248 | 37 | 100 | 211 | |
23S:1093-1098 [F (Hairpin)] | GUAAUA | 78.4 | -- | 90.0 | 0.5 |
GUAACA | 20.1 | 100.0 | 7.0 | 92.7 | |
gap | -- | -- | -- | 1.9 | |
Other | 1.5 | -- | 3.0 | 4.9 | |
N | 5 | 1 | 4 | 7 | |
Seq | 259 | 37 | 100 | 206 | |
23S:1223-1226 [A (Hairpin)] | GUAA | 32.0 | 10.8 | 45.0 | 22.2 |
GUGA | 26.3 | 48.6 | 6.0 | 35.1 | |
GGAA | 22.2 | -- | 14.0 | -- | |
GAGA | 7.1 | 24.4 | 2.0 | -- | |
GCGA | 2.3 | 10.8 | 5.0 | 24.2 | |
GAAA | 4.9 | 2.7 | 17.0 | -- | |
gap | 0.4 | -- | -- | 1.5 | |
Other | 4.8 | 2.7 | 11.0 | 9.3 | |
N | 13 | 6 | 11 | 12 | |
Seq | 266 | 37 | 100 | 194 | |
23S:1339-1342 [I (Multi-Stem)] | GUUA | 61.8 | 73.2 | 40.0 | 56.4 |
GUGA | 27.2 | 14.6 | 46.0 | 17.7 | |
GUAA | 9.1 | 2.4 | 9.0 | 2.2 | |
GUCA | 0.4 | 9.8 | 2.0 | 17.1 | |
GUUG | -- | -- | -- | 5.5 | |
gap | 1.1 | -- | -- | 1.1 | |
Other | 0.4 | -- | 3.0 | -- | |
N | 5 | 4 | 6 | 5 | |
Seq | 265 | 41 | 100 | 181 | |
23S:1352-1354 [G (Internal)] | UAA | 98.9 | 97.6 | 100.0 | 84.0 |
UGA | -- | -- | -- | 12.7 | |
gap | 0.4 | -- | -- | 0.6 | |
Other | 0.7 | 2.4 | -- | 2.7 | |
N | 3 | 2 | 1 | 4 | |
Seq | 265 | 41 | 100 | 181 | |
23S:1565-1572 [C (Internal)] | CAAGAAAA | 56.8 | -- | 62.0 | -- |
CAGGAAAA | 15.9 | -- | 9.0 | -- | |
CGAGAAAA | 14.8 | -- | 3.0 | -- | |
CAGGAAAU | 5.7 | -- | -- | -- | |
CGUGAAAA | -- | 36.6 | -- | 5.0 | |
CAUGAAAA | -- | 31.7 | -- | 3.3 | |
CUUGAAAA | -- | 26.8 | -- | 59.4 | |
CUAGAAAA | 1.1 | -- | 22.0 | 1.1 | |
CUUGAAAC | -- | -- | -- | 12.2 | |
gap | -- | 4.9 | -- | 8.9 | |
Other | 5.7 | -- | 4.0 | 10.1 | |
N | 15 | 3 | 8 | 18 | |
Seq | 264 | 41 | 100 | 180 | |
23S:1668-1681 [C (Multi-Stem)] | AACUCGGCAAAAUG | 33.6 | 2.4 | 23.8 | -- |
AACUCUGCAAAAUA | 12.2 | -- | -- | -- | |
AACUAGGCAAAAUG | 11.1 | -- | -- | -- | |
AACUCGGCAAAUUG | 10.3 | 29.3 | 7.9 | -- | |
AACUCGGCAAAUUA | 6.1 | 14.6 | 1.0 | -- | |
AAUUCGGCAAGUUA | -- | 17.1 | -- | -- | |
AAGUCGGCAAAUUG | -- | 7.3 | -- | 1.9 | |
AACUCGGCAAACUG | -- | 4.9 | 28.7 | -- | |
AACUCGGCAAAAUA | 3.4 | 4.9 | 25.7 | 0.6 | |
AACUCGGCAAACUA | -- | -- | 5.0 | -- | |
AAGUCGGCAAAAUA | -- | -- | -- | 27.0 | |
AAGUCGGCAAAAUG | -- | -- | -- | 20.8 | |
AAGUCGGCAAAUUA | -- | -- | -- | 13.8 | |
AAGUCGGCAAGCCG | -- | -- | -- | 7.5 | |
AAGUCGGCAAGUCA | -- | -- | -- | 5.7 | |
gap | 1.5 | -- | -- | 2.5 | |
Other | 21.8 | 19.5 | 7.9 | 20.2 | |
N | 22 | 12 | 12 | 24 | |
Seq | 262 | 41 | 101 | 159 | |
23S:1926-1928 [D (Hairpin)] | UAA | 99.6 | 95.1 | 99.0 | 98.8 |
gap | -- | -- | -- | 0.6 | |
Other | 0.4 | 4.9 | 1.0 | 0.6 | |
N | 2 | 2 | 2 | 2 | |
Seq | 240 | 41 | 101 | 155 | |
23S:1951-1955 [H (Hairpin)] | UAAGU | 90.4 | 53.7 | 100.0 | -- |
UAAAU | 6.3 | 7.3 | -- | -- | |
UCAGU | -- | 17.1 | -- | -- | |
UAAUU | 0.8 | 9.8 | -- | 92.3 | |
CAGGU | 0.4 | 7.3 | -- | ||
gap | 1.7 | -- | -- | -- | |
Other | 0.4 | 4.8 | -- | 7.7 | |
N | 5 | 6 | 1 | 5 | |
Seq | 240 | 41 | 101 | 155 | |
23S:2162-2173 [I (Internal)] | AUCGGUGGGAUA | 9.5 | -- | -- | -- |
GUCCUUGAAAUA | 8.3 | -- | -- | -- | |
GACCUUGAAAUA | 8.3 | -- | -- | 0.6 | |
AUCCUUGAAAUA | 6.6 | -- | -- | -- | |
GUUGUUGAAAUA | 5.0 | -- | -- | -- | |
GAAAGUGAAACA | -- | 14.6 | -- | -- | |
GCCAAUGAAACA | -- | 9.8 | -- | -- | |
GUCCCUGAAACA | -- | 9.8 | -- | -- | |
GGUCAUGAGACA | -- | 7.3 | -- | -- | |
AACAGUGAAAUA | 0.8 | 7.3 | -- | -- | |
GUCCAUGAGACA | -- | 7.3 | -- | -- | |
AUCAGUGAGAGA | -- | -- | 29.7 | -- | |
AUCAUUGAGAGA | -- | -- | 13.9 | -- | |
AUCAGUGAGAUA | -- | -- | 11.9 | -- | |
GUCAUUGAGAGA | -- | -- | 8.9 | -- | |
AACAGUGAGAGA | -- | -- | 5.0 | -- | |
GCCGGUGAAAUA | 0.8 | -- | -- | 18.7 | |
GUCCGUGAAAUA | -- | -- | -- | 12.3 | |
GCAAGUGAAAUA | -- | -- | -- | 9.7 | |
GAAAGUGAAAUA | -- | -- | -- | 8.4 | |
GCCAGUGAAAUA | -- | -- | -- | 5.2 | |
gap | 0.4 | -- | -- | 4.5 | |
Other | 60.3 | 43.9 | 30.6 | 40.6 | |
N | 57 | 18 | 26 | 42 | |
Seq | 242 | 41 | 101 | 155 | |
23S:2197-2199 [G (Multi-Stem)] | UAA | 99.6 | 48.8 | 95.1 | 6.5 |
UUA | -- | 24.4 | 1.0 | 86.5 | |
UCA | -- | 17.1 | 3.9 | 2.6 | |
CCG | -- | 9.8 | -- | -- | |
gap | -- | -- | -- | -- | |
Other | 0.4 | -- | -- | 4.4 | |
N | 2 | 4 | 3 | 5 | |
Seq | 242 | 41 | 102 | 155 | |
23S:2265-2275 [I (Hairpin)] | UAAAGAGUAAC | 23.5 | -- | 3.9 | -- |
UAAAAGGUAAC | 18.9 | -- | 48.0 | -- | |
UAAAAAGUAAC | 8.2 | -- | 7.8 | 2.6 | |
CAAAGAGUAAC | 7.8 | -- | -- | 1.9 | |
CAAAGCGUAAC | 6.2 | -- | 1.0 | -- | |
CAAAGUGUAAC | 5.3 | -- | -- | 0.6 | |
GAAAAGAUAUC | -- | 26.8 | -- | -- | |
GAAAAGAUAAC | -- | 22.0 | -- | -- | |
GAAAAGGUAUC | -- | 12.2 | -- | -- | |
GAAAGGGUAAC | -- | 9.8 | -- | -- | |
GAAAUGGUAUC | -- | 7.3 | -- | -- | |
GAAAAGGUAAC | -- | 7.3 | -- | -- | |
CAAAAGGUAAC | 2.5 | -- | 14.7 | -- | |
UAAAGCGUAAC | 2.5 | -- | 5.9 | -- | |
UAAAAGAUAAC | 0.4 | -- | -- | 32.3 | |
UACAAGACAAC | -- | -- | -- | 10.3 | |
UAAACGAUAAC | -- | -- | -- | 7.7 | |
CAAACGGUAAC | -- | -- | 1.0 | 7.1 | |
GAAACAAUAGC | -- | -- | -- | 5.2 | |
gap | 2.5 | -- | 1.0 | 5.2 | |
Other | 22.2 | 14.6 | 16.7 | 27.1 | |
N | 22 | 11 | 16 | 37 | |
Seq | 243 | 41 | 102 | 155 | |
23S:2375-2378 [A (Hairpin)] | GAAA | 97.9 | 90.2 | 96.1 | 94.9 |
GAGA | -- | 7.3 | -- | -- | |
gap | 2.1 | -- | -- | 0.6 | |
Other | -- | 2.5 | 3.9 | 4.5 | |
N | 1 | 3 | 3 | 5 | |
Seq | 242 | 41 | 102 | 156 | |
23S:2422-2433 [I (Multi-Stem)] | CUCAACGGAUAA | 76.4 | -- | 82.4 | -- |
CUCAAAGGAUAA | 5.4 | -- | -- | -- | |
CUUAACGGAUAA | 5.4 | -- | 2.9 | -- | |
gap | 0.8 | 100.0 | 4.9 | 100.0 | |
Other | 12.0 | -- | 9.8 | -- | |
N | 16 | -- | 7 | -- | |
Seq | 242 | 41 | 102 | -- | |
23S:2448-2454 [I (Multi-Stem)] | AUAACAG | 99.6 | 82.9 | 99.0 | -- |
AUAACUG | -- | 9.8 | -- | 98.6 | |
gap | -- | -- | 1.0 | 1.4 | |
Other | 0.4 | 7.3 | -- | -- | |
N | 2 | 4 | 1 | 1 | |
Seq | 242 | 7.3 | 102 | 139 | |
23S:2497-2506 [I (Multi-Stem)] | ACCUCGAUGU | 99.2 | 36.6 | 100.0 | -- |
ACAUCGAUGU | -- | 29.3 | -- | -- | |
ACUUCGAUGU | -- | 9.8 | -- | -- | |
ACCUCGCUGU | -- | 7.3 | -- | -- | |
ACCCAGACGU | -- | 7.3 | -- | -- | |
CCUUCGAUGU | -- | -- | -- | 81.3 | |
UCUUCGAUGU | -- | -- | -- | 18.0 | |
gap | 0.4 | -- | -- | 0.7 | |
Other | 0.4 | 9.7 | -- | -- | |
N | 2 | 7 | 1 | 2 | |
Seq | 242 | 41 | 102 | 139 | |
23S:2583-2587 [I (Multi-Stem)] | GUUCA | 62.4 | 17.1 | 94.1 | -- |
GUUUA | 37.2 | 82.9 | -- | 96.4 | |
gap | 0.4 | -- | 4.9 | 1.4 | |
Other | -- | -- | 1.0 | 2.2 | |
N | 2 | 2 | 2 | 3 | |
Seq | 242 | 41 | 102 | 140 | |
23S:2595-2598 [A (Hairpin)] | GUGA | 96.2 | 70.7 | 50.0 | 98.6 |
GCGA | 3.8 | 29.3 | -- | 0.7 | |
gap | -- | -- | 46.1 | 0.7 | |
Other | -- | -- | 3.9 | -- | |
N | 2 | 2 | 2 | 2 | |
Seq | 237 | 41 | 102 | 140 | |
23S:2659-2662 [A (Hairpin)] | GAGA | 99.2 | 100.0 | 56.9 | 99.3 |
gap | -- | -- | 43.1 | 0.7 | |
Other | 0.8 | -- | -- | -- | |
N | 1 | 1 | 1 | 1 | |
Seq | 237 | 41 | 102 | 140 | |
23S:2738-2741 [H (Internal)] | AUAA | 97.9 | 31.7 | 52.0 | 15.1 |
GUAA | -- | 58.5 | -- | 0.7 | |
AUUA | -- | -- | 1.0 | 71.2 | |
gap | 1.7 | -- | 43.1 | 1.4 | |
Other | 0.4 | 9.8 | 3.9 | 11.6 | |
N | 2 | 4 | 5 | 14 | |
Seq | 236 | 41 | 102 | 139 | |
23S:2857-2860 [A (Hairpin)] | GUAA | 27.9 | 17.1 | 26.0 | -- |
GCGA | 25.2 | -- | -- | -- | |
GUGA | 17.1 | -- | 12.0 | -- | |
GCAA | 14.0 | 9.8 | 12.0 | -- | |
UUCG | -- | 12.2 | -- | 0.8 | |
GUUU | -- | 9.8 | -- | -- | |
CUUA | 11 | 9.8 | -- | -- | |
GAAA | 1.8 | 7.3 | -- | -- | |
CUUU | 11 | -- | -- | 8.4 | |
gap | 10.8 | 12.2 | 50.0 | 80.7 | |
Other | 3.2 | 21.8 | -- | 10.1 | |
N | 11 | 12 | 3 | 13 | |
Seq | 222 | 41 | 100 | 119 |