Last modified on 11 May 2000.
U-Turn | Pattern | B | A | C | E |
---|---|---|---|---|---|
16S:260-266 [F (Hairpin)] | GUAAUGG | 30.8 | 19.6 | 21.8 | 4.2 |
GUAACGG | 25.8 | 52.7 | 6.5 | 0.1 | |
GUAAAGG | 20.3 | 5.8 | 12.4 | 0.9 | |
GUAAUGU | -- | 5.4 | -- | -- | |
GCAAUAG | -- | -- | 15.9 | -- | |
GCAAUGG | -- | -- | 10.0 | -- | |
GUAUUGG | -- | -- | -- | 23.2 | |
AUAGAGG | -- | -- | -- | 16.8 | |
GUAUUGU | -- | -- | -- | 10.0 | |
GUAGUGG | 1.3 | 0.9 | -- | 7.6 | |
UUCUGCG | -- | -- | -- | 7.5 | |
AUAGUGG | -- | -- | -- | 6.3 | |
gap | 2.5 | -- | 2.4 | 1.0 | |
Other | 19.3 | 15.6 | 31.0 | 22.4 | |
N | 56 | 15 | 23 | 67 | |
Seq | 5038 | 224 | 170 | 1029 | |
16S:691-696 [F (Hairpin)] | GUGAAA | 78.1 | 60.9 | 93.5 | 95.1 |
GUGGAA | 11.8 | 1.3 | -- | 0.3 | |
GUAAAA | 5.9 | 14.6 | 0.6 | 0.3 | |
GCGAAA | 0.0 | 21.5 | -- | 0.1 | |
gap | 3.3 | 1.7 | 0.6 | 1.2 | |
Other | 0.9 | -- | 5.3 | 3.0 | |
N | 20 | 4 | 7 | 7 | |
Seq | 4873 | 233 | 169 | 1043 | |
23S:714-717 [F (Hairpin)] | UAAC | 49.6 | -- | 45.0 | 0.5 |
UAAG | 23.4 | -- | 1.0 | -- | |
UAAA | 19.5 | -- | 22.0 | -- | |
GAAA | -- | 78.4 | -- | 95.6 | |
UUAC | -- | 8.1 | -- | -- | |
GCCA | -- | 5.4 | -- | -- | |
AACA | -- | 5.4 | -- | 2.0 | |
UGAA | 1.1 | -- | 13.0 | -- | |
UAAU | 4.6 | -- | 7.0 | -- | |
UGAU | -- | -- | 5.0 | -- | |
gap | -- | -- | -- | 0.5 | |
Other | 1.8 | 2.7 | 7.0 | 1.4 | |
N | 10 | 5 | 9 | 6 | |
Seq | 282 | 37 | 100 | 205 | |
23S:1093-1098 [F (Hairpin)] | GUAAUA | 78.4 | -- | 90.0 | 0.5 |
GUAACA | 20.1 | 100.0 | 7.0 | 92.7 | |
gap | -- | -- | -- | 1.9 | |
Other | 1.5 | -- | 3.0 | 4.9 | |
N | 5 | 1 | 4 | 7 | |
Seq | 259 | 37 | 100 | 206 |