Last modified on 11 May 2000.


U-Turn Pattern B A C E
16S:787-795 [H (Hairpin)] AUUAGAUAC 95.6 98.7 91.1 20.6
AUUAGAGAC 0.3 -- 6.0 3.1
AUCAGAUAC -- -- -- 73.3
gap 1.9 0.9 -- 2.9
Other 2.2 0.4 2.9 5.7
N 25 2 7 13
Seq 4861 230 168 1028
16S:1065-1067 [H (Multi-Stem)] UCA 98.1 67.2 99.4 2.4
CCA 0.3 30.3 -- 1.2
UUA 0.0 -- -- 89.1
gap 1.3 2.0 0.6 1.8
Other 0.3 0.5 -- 5.5
N 8 3 1 13
Seq 4515 201 164 1029
16S:1358-1364 [H (Hairpin)] UCAGCAU 45.4 -- 78.1 --
UCAGCAC 22.2 -- 8.3 0.7
UCAGAAU 20.7 0.5 1.2 --
UCAACAA -- 14.5 -- 0.3
UCAGAAG 0.0 9.2 -- --
UCAUCAU 0.2 8.2 -- 13.8
UCAUAAU -- 7.7 1.8 --
UCAAUAU -- 7.7 -- 0.1
UCAACAU 0.1 6.3 -- 0.1
UCACUAU 0.0 5.8 -- --
UCAACAG -- 5.8 -- 0.1
UCAUCAG -- -- -- 50.9
UCAUAAG -- 1.9 -- 11.9
UCAUCAA -- -- -- 7.1
gap 3.2 1.9 4.1 1.0
Other 8.2 30.5 6.5 14.0
N 47 23 12 34
Seq 4603 207 169 1029
23S:1951-1955 [H (Hairpin)] UAAGU 90.4 53.7 100.0 --
UAAAU 6.3 7.3 -- --
UCAGU -- 17.1 -- --
UAAUU 0.8 9.8 -- 92.3
CAGGU 0.4 7.3 --
gap 1.7 -- -- --
Other 0.4 4.8 -- 7.7
N 5 6 1 5
Seq 240 41 101 155
23S:2738-2741 [H (Internal) AUAA 97.9 31.7 52.0 15.1
GUAA -- 58.5 -- 0.7
AUUA -- -- 1.0 71.2
gap 1.7 -- 43.1 1.4
Other 0.4 9.8 3.9 11.6
N 2 4 5 14
Seq 236 41 102 139