Last modified on 18 April 2012.
| number | CG particle name | mass (amu) | bond connections |
|---|---|---|---|
| 1 | P | 94.970 | 2 |
| 2 | S | 97.054 | 3 |
| 3 | CG | 53.022 | 3 |
| 4 | N6 | 42.030 | 2 |
| 5 | N2 | 54.030 | 2 |
| 6 | O6 | 43.014 | 2 |
| 7 | O2 | 42.006 | 2 |
| 8 | CU | 26.016 | 3 |
| 9 | CA | 39.015 | 2 |
Comparative RNA Web Site and Project The Gutell Lab
- 1. CAR
- 1. Comparative Analysis of RNA
- 1A. Current Structure Models for Reference Organisms
- 1B. Evolution of the Noller-Woese-Gutell 16S and 23S rRNA Comparative Structure Models
- 1C. Simple RNA Secondary and Tertiary Structure Base Pair and Unpaired Nucleotide Definitions
- 1D. Methods: Structure Prediction with Comparative Sequence Analysis
- 1E. Modeling the Comparative Structure of Ribosomal RNAs in the 1980s
- 2. SAE
- 2. Structure and Evolution
- 2A. RNA Structure
- Nucleotide Frequency Data
- Base Pairs
- 16S rRNA Model (Table)
- 16S rRNA Tentative (Table)
- 16S rRNA Lousy (Table)
- 23S rRNA Model (Table)
- 23S rRNA Tentative (Table)
- 23S rRNA Lousy (Table)
- 5S rRNA Model (Table)
- 5S rRNA Tentative (Table)
- Group I Intron RNA Model (Table)
- Group IIA Intron RNA Model (Table)
- Group IIB Intron RNA Model (Table)
- tRNA Model (Table)
- Base Triples
- Single Bases
- Base Pairs
- Nucleotide Modifications
- Crystal Structure Information
- See Also: 4A: Three-Dimensional Structure
- Nucleotide Frequency Data
- 2B. Evolution of RNA
- 3. DAT
- 4. SIM
- 4. Supplementary Information for Manuscripts
- 4A. Structure
- 4B. Motifs
- 4C. Folding
- 4D. Phylogenetic Analysis of Ribosomal RNA
- 4E. Lateral Gene Transfer: Group I Introns
- 4F. Computation and Software
- rCAD: The RNA Comparative Analysis Database
- RNA2DMap: Visual Exploration of RNA Structure
- CRWAlign: Template-based Alignment Algorithm
- CRWAlign2: Two Accurate Template-based Alignment Systems
- R3D-2-MSA: Structure to Sequence Alignment Server
- RNAMotif
- CAT: Comparative Analysis Tool
- Covariation Analysis
- 5. FAM
- 0. AI
Home » 4. Supplementary Information for Manuscripts » 4C. Folding » Coarse-Grained Model for Simulation of RNA Three-Dimensional Structures »
Coarse-Grained Model for Simulation of RNA Three-Dimensional Structures: Table 1
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