Last modified on 18 April 2012.
Table 7: Comparison of All-Atom RMSDs between the Final Structures of 100 ns Simulated-Annealing Simulations to Their Native Structures
| PDB ID | rmsd (ang) without restraints | rmsd (ang) with restraints | number of restrained pairs |
|---|---|---|---|
| MIN/AVGa | MIN/AVG | ||
| 157D | 6.6/7.2 | 5.2/5.5 | 5 |
| 1AL5 | 6.4/8.4 | 5.2/5.8 | 5 |
| 1DQF | 4.2/5.7 | 4.8/5.3 | 4 |
| 1F5G | 5.2/7.0 | 5.8/5.9 | 5 |
| 1I9X | 6.8/8.4 | 3.0/4.7 | 5 |
| 1KD3 | 8.0/9.1 | 5.3/5.6 | 5 |
| 1L2X | 9.7/10.4 | 5.0/5.2 | 5 |
| 1LNT | 6.5/7.7 | 5.0/5.6 | 5 |
| 1QCU | 6.0/8.8 | 4.0/4.4 | 5 |
| 1ZIH | 3.8/4.7 | 3.6/5.0 | 3 |
| 2AO5 | 5.1/6.5 | 2.8/4.6 | 5 |
| 2JXQ | 4.1/6.4 | 3.0/4.8 | 5 |
| 2K7E | 5.9/7.8 | 5.0/5.1 | 5 |
| 353D | 4.8/6.0 | 4.0/5.5 | 5 |
| 472D | 4.6/6.9 | 4.7/5.5 | 3 |
a The minimum and average rmsd value among all repeats (the restrained pairs shown in the last column on average correspond to ~40% of each RNA).
