Accession Suboptimals Better Than Optimal Suboptimals Worse Than Optimal Suboptimals Same as Optimal Total Suboptimals Optimal Accuracy1
Archaea
Aeropyrum pernix AP000062 309 324 116 749 63%
Archaeoglobus fulgidus X05567 AE000965 523 175 51 749 46%
Haloarcula marismortui rrnA X61688 392 336 21 749 61%
Haloarcula marismortui rrnB X61689 134 586 29 749 69%
Halobacterium sp. AE005128 56 680 13 749 73%
Haloferax volcanii K00421 68 661 20 749 80%
Methanobacterium formicicum M36508 37 688 24 749 69%
Methanococcus jannaschii U67517 L77117 374 302 73 749 53%
Methanococcus vannielii M36507 205 493 51 749 54%
Methanospirillum hungatei M60880 456 175 118 749 46%
Methanothermobacter thermautotrophicus AE000930 223 414 112 749 63%
Natronobacterium innermongoliae AF009601 248 450 51 749 67%
Natronorubrum bangense Y14028 121 550 78 749 67%
Pyrococcus abyssi AJ248283 155 537 57 749 67%
Pyrococcus furiosus U20163 254 365 130 749 60%
Pyrococcus horikoshii AP000001 121 563 65 749 67%
Pyrodictium occultum M21087 197 478 74 749 54%
Sulfolobus acidocaldarius D14876 75 615 59 749 59%
Sulfolobus P2 NPA 149 532 68 749 51%
Sulfolobus solfataricus X03235 75 615 59 749 59%
Thermococcus celer M21529 162 495 92 749 72%
Thermoplasma acidophilum AL445067 M38637 355 353 41 749 60%
Thermoproteus tenax M35966 102 604 43 749 65%
Bacteria
Acidobacterium capsulatum D26171 173 519 57 749 46%
Acinetobacter calcoaceticus M34139 463 206 80 749 45%
Actinomyces israelii X82450 382 211 156 749 30%
Aeromonas hydrophila X60407 82 596 71 749 52%
Agrobacterium tumefaciens M11223 251 401 97 749 56%
Allochromatium vinosum M26629 544 154 51 749 37%
Anabaena sp. X59559 569 113 67 749 47%
Aquifex aeolicus AE000709 AE000751 192 494 63 749 62%
Aquifex pyrophilus M83548 175 520 54 749 61%
Arthrobacter globiformis M23411 392 299 58 749 47%
Azorhizobium caulinodans D11342 93 594 62 749 49%
Bacillus anthracis X55059 336 378 35 749 48%
Bacillus cereus X55060 459 219 71 749 53%
Bacillus halodurans AB013373 380 334 35 749 57%
Bacillus subtilis K00637 482 211 56 749 53%
Bacteroides fragilis M61006 314 405 30 749 59%
Bartonella bacilliformis Z11683 124 524 101 749 50%
Bartonella henselae M73229 343 342 64 749 53%
Bartonella quintana M11927 394 289 66 749 49%
Beggiatoa sp. 1401-13 L40997 528 161 60 749 42%
Bordetella bronchiseptica U04948 329 387 33 749 53%
Bordetella parapertussis U04949 69 663 17 749 62%
Bordetella pertussis U04950 569 112 68 749 44%
Borrelia burgdorferi M88329 337 334 78 749 49%
Borrelia hermsii U42292 439 211 99 749 47%
Brachyspira hyodysenteriae U23035 470 219 60 749 38%
Bradyrhizobium japonicum Z35330 85 581 83 749 53%
Brevinema andersonii L31543 338 354 57 749 48%
Brucella melitensis L26166 130 515 104 749 56%
Buchnera sp. APS AP000398 625 62 62 749 40%
Burkholderia mallei S55008 232 378 139 749 45%
Burkholderia sp. U37342 88 545 116 749 53%
Campylobacter jejuni Z29326 541 184 24 749 48%
Campylobacter sputorum X67775 460 158 131 749 47%
Chlamydia muridarum AE002280 348 351 50 749 52%
Chlamydia trachomatis U68443 321 388 40 749 52%
Chlamydophila pneumoniae L06108 83 610 56 749 54%
Chlamydophila psittaci U68447 239 436 74 749 51%
Chlorobium vibrioforme M62791 277 388 84 749 48%
Chlorogloeopsis sp. PCC 7518 X68780 138 538 73 749 57%
Chromohalobacter marismortui X87222 467 230 52 749 44%
Citrobacter freundii M59291 345 217 187 749 40%
Clostridium botulinum F L37593 142 560 47 749 65%
Clostridium difficile X73450 228 491 30 749 55%
Clostridium innocuum M23732 140 523 86 749 54%
Clostridium perfringens M69264 132 561 56 749 54%
Clostridium tetani X74770 505 206 38 749 44%
Comamonas testosteroni M11224 399 270 80 749 50%
Corynebacterium diphtheriae X84248 406 292 51 749 34%
Coxiella burnetii M21291 163 499 87 749 48%
Cristispira CP1 U42638 438 211 100 749 40%
Deferribacter thermophilus U75602 322 372 55 749 53%
Deinococcus radiodurans M21413 155 520 74 749 57%
Desulfovibrio desulfuricans M34113 69 667 13 749 60%
Dichelobacter nodosus M35016 492 216 41 749 51%
Edwardsiella tarda AF015259 50 650 49 749 61%
Enterococcus faecalis Y18293 74 636 39 749 67%
Enterococcus faecium AF070223 236 452 61 749 60%
environ.Eubacteria clone W15 NPA 452 263 34 749 59%
Epulopiscium sp. M99572 86 646 17 749 50%
Erysipelothrix rhusiopathiae M23728 142 591 16 749 57%
Escherichia coli J01695 108 587 54 749 53%
Eubacterium brachy Z36272 511 120 118 749 46%
Francisella tularensis Z21931 614 82 53 749 41%
Frankia sp. M55343 393 277 79 749 40%
Fusobacterium necrophorum X74408 97 614 38 749 43%
Fusobacterium nucleatum subsp. nucleatum M58683 527 110 112 749 48%
Gemmata obscuriglobus X56305 108 579 62 749 53%
Geotoga subterranea L10659 210 482 57 749 62%
Gluconacetobacter liquefaciens X75617 493 184 72 749 43%
Haemobartonella felis U95297 579 121 49 749 34%
Haemophilus influenzae X87977 299 312 138 749 41%
Haemophilus influenzae (operons A-F) U32741 U32744 U32755 U32847 U32697 U32708 398 268 83 749 45%
Halomonas halodenitrificans L04942 390 294 65 749 42%
Helicobacter pylori M88157 54 681 14 749 43%
Heliobacterium chlorum M11212 92 616 41 749 48%
Holophaga foetida X77215 331 293 125 749 47%
Isosphaera pallida X64372 40 664 45 749 58%
Klebsiella pneumoniae X80684 112 513 124 749 45%
Lactobacillus acidophilus M58802 360 312 77 749 52%
Lactococcus lactis subsp. lactis AE006456 205 466 78 749 62%
Legionella pneumophila M59157 255 453 41 749 43%
Leptonema illini M88719 550 163 36 749 45%
Leptospira interrogans X17547 28 684 37 749 67%
Leptospirillum sp. AF356830 260 369 120 749 39%
Listeria monocytogenes M58822 385 271 93 749 43%
Mesorhizobium loti AP003001 63 628 58 749 58%
Methylobacterium sp. Z23160 510 127 112 749 32%
Methylococcus capsulatus X72771 187 487 75 749 29%
Micrococcus luteus M38242 84 564 101 749 51%
Microcystis aeruginosa U03402 Z28699 376 274 99 749 39%
Mycobacterium avium X52918 309 371 69 749 34%
Mycobacterium leprae X56657 552 82 115 749 19%
Mycobacterium tuberculosis X52917 445 250 54 749 21%
Mycoplasma capricolum X00921 447 248 54 749 36%
Mycoplasma gallisepticum M22441 230 361 158 749 43%
Mycoplasma genitalium U39694 141 538 70 749 51%
Mycoplasma hyopneumoniae Y00149 100 620 29 749 64%
Mycoplasma mycoides M23943 422 205 122 749 31%
Mycoplasma pneumoniae M29061 470 232 47 749 50%
Myxococcus xanthus M34114 502 201 46 749 44%
Neisseria gonorrhoeae X07714 296 389 64 749 52%
Neisseria meningitidis AE002364 83 632 34 749 60%
Nocardia asteroides X80606 617 71 61 749 22%
Oscillatoria agardhii X84811 120 590 39 749 63%
Pasteurella multocida M35018 204 507 38 749 40%
Petrotoga miotherma L10657 102 590 57 749 54%
Pirellula marina X62912 524 142 83 749 32%
Pirellula staleyi M34126 342 334 73 749 47%
Planctomycetaceae Schlesner 670 X81948 570 114 65 749 54%
Plesiomonas shigelloides X74688 156 541 52 749 46%
Pleurocapsa sp. X78681 510 196 43 749 41%
Porphyromonas gingivalis L16492 360 303 86 749 34%
Proteus vulgaris X07652 64 606 79 749 57%
Pseudomonas aeruginosa M34133 438 192 119 749 44%
Pseudomonas putida D84020 345 340 64 749 56%
Pseudomonas sp. U37339 475 176 98 749 50%
Psychrobacter pacificensis AB016054 291 370 88 749 48%
Rhodobium orientis D30792 37 662 50 749 59%
Rhodoblastus acidophilus M34128 324 350 75 749 49%
Rhodococcus erythropolis AF001265 469 183 97 749 39%
Rickettsia bellii U11014 266 395 88 749 56%
Rickettsia prowazekii M21789 312 372 65 749 55%
Rickettsia rickettsii L36217 216 455 78 749 54%
Salmonella typhimurium X80681 559 126 64 749 47%
Serratia marcescens M59160 215 449 85 749 48%
Shewanella putrefaciens X81623 105 603 41 749 54%
Shigella dysenteriae X96966 34 671 44 749 52%
Spirochaeta aurantia M57740 189 512 48 749 55%
Staphylococcus aureus L36472 219 317 213 749 50%
Streptobacillus moniliformis Z35305 353 345 51 749 33%
Streptococcus mutans X58303 272 383 94 749 54%
Streptococcus pneumoniae X58312 438 180 131 749 60%
Streptococcus pyogenes X59029 322 295 132 749 35%
Streptomyces acidiscabies D63865 87 620 42 749 61%
Streptomyces albidoflavus Z76676 389 242 118 749 44%
Streptomyces albus X53163 471 201 77 749 47%
Streptomyces ambofaciens M27245 394 236 119 749 49%
Streptomyces bikiniensis X79851 406 278 65 749 43%
Streptomyces bluensis X79324 154 494 101 749 46%
Streptomyces bottropensis D63868 265 376 108 749 46%
Streptomyces brasiliensis X53162 351 208 190 749 45%
Streptomyces caelestis X80824 253 411 85 749 50%
Streptomyces coelicolor Y00411 339 279 131 749 44%
Streptomyces diastaticus X53161 238 358 153 749 50%
Streptomyces diastatochromogenes D63867 216 448 85 749 45%
Streptomyces espinosus X80826 227 384 138 749 42%
Streptomyces eurythermus D63870 335 294 120 749 48%
Streptomyces felleus Z76681 389 242 118 749 44%
Streptomyces galbus X79325 423 278 48 749 40%
Streptomyces glaucescens X79322 236 422 91 749 46%
Streptomyces gougerotii Z76687 237 430 82 749 49%
Streptomyces griseus X61478 463 194 92 749 34%
Streptomyces hygroscopicus X79853 432 257 60 749 40%
Streptomyces intermedius Z76686 53 614 82 749 49%
Streptomyces lavendulae X53173 89 558 102 749 58%
Streptomyces limosus Z76679 389 242 118 749 44%
Streptomyces lincolnensis X79854 399 235 115 749 38%
Streptomyces macrosporus Z68099 136 530 83 749 49%
Streptomyces mashuensis X79323 63 665 21 749 68%
Streptomyces megasporus Z68100 534 129 86 749 49%
Streptomyces neyagawaensis D63869 556 138 55 749 41%
Streptomyces nodosus AF114033 370 336 43 749 43%
Streptomyces odorifer Z76682 389 242 118 749 44%
Streptomyces ornatus X79326 263 330 156 749 32%
Streptomyces pseudogriseolus X80827 349 268 132 749 46%
Streptomyces purpureus X53170 292 205 252 749 41%
Streptomyces rimosus X62884 435 266 48 749 43%
Streptomyces rutgersensis Z76688 237 430 82 749 49%
Streptomyces sampsonii D63871 395 285 69 749 44%
Streptomyces scabiei D63862 226 455 68 749 46%
Streptomyces setonii D63872 376 282 91 749 44%
Streptomyces sp. D63866 112 553 84 749 60%
Streptomyces subrutilus X80825 372 309 68 749 42%
Streptomyces tendae D63873 579 143 27 749 46%
Streptomyces thermodiastaticus Z68101 199 449 101 749 44%
Streptomyces thermolineatus Z68097 543 157 49 749 41%
Streptomyces thermoviolaceus Z68096 231 433 85 749 47%
Streptomyces thermovulgaris Z68098 96 523 130 749 52%
Synechococcus sp. PCC 6301 X03538 213 472 64 749 44%
Synechocystis sp. PCC 6803 D64000 D90916 336 333 80 749 43%
Thermomicrobium roseum M34115 468 231 50 749 45%
Thermotoga maritima M21774 525 152 72 749 61%
Thermus aquaticus L09663 228 464 57 749 61%
Thermus thermophilus X07998 454 226 69 749 55%
Treponema pallidum (rRNA A) AE001204 83 579 87 749 49%
Tropheryma whipplei mw040 X99636 164 553 32 749 52%
Ureaplasma urealyticum AE002112 90 633 26 749 61%
Vibrio cholerae X76337 276 438 35 749 55%
Vibrio parahaemolyticus X56580 342 260 147 749 34%
Xanthomonas albilineans X95918 297 393 59 749 40%
Xanthomonas campestris NPA 184 490 75 749 51%
Xylella fastidiosa AE003861 254 433 62 749 38%
Yersinia pestis L37604 281 446 22 749 51%
Yersinia pseudotuberculosis Z21939 53 688 8 749 55%
Eukaryotic Chloroplast
Apodanthes sp NPA 34 698 17 749 48%
Astasia longa X14386 663 63 23 749 32%
Babesia bovis U06105 400 288 61 749 41%
Chlamydomonas humicola AF374186 399 201 149 749 41%
Chlamydomonas reinhardtii J01395 315 409 25 749 53%
Chlorella vulgaris AB001684 48 690 11 749 71%
Corethron criophilum NPA 262 423 64 749 49%
Cryptomonas sp. X56805 531 163 55 749 37%
Cyanidium caldarium X52985 429 263 57 749 41%
Cyanophora paradoxa X81840 304 406 39 749 50%
Cynomorium coccineum U67743 490 141 118 749 25%
Cytinus ruber U47845 316 377 56 749 37%
Emiliania huxleyi X82156 118 621 10 749 62%
Euglena gracilis X12890 V00159 666 18 65 749 19%
Glaucocystis nostochinearum X82496 189 521 39 749 54%
Gloeochaete wittrockiana X82495 37 650 62 749 50%
Heterosigma akashiwo M82860 405 218 126 749 40%
Hydnora africana U67745 257 418 74 749 46%
Marchantia polymorpha X04465 330 389 30 749 53%
Mitrastema yamamotoi U67742 574 81 94 749 27%
Nicotiana tabacum V00165 402 277 70 749 35%
Palmaria palmata Z18289 360 258 131 749 43%
Pilostyles thurberi U67741 515 138 96 749 31%
Plasmodium falciparum (plastid-like) X57167 X95275 311 221 217 749 25%
Plasmodium vivax AF040974 63 529 157 749 57%
Polytoma obtusum AF374187 516 170 63 749 35%
Polytoma oviforme AF374188 129 523 97 749 64%
Polytoma uvella AF374189 436 126 187 749 29%
Pylaiella littoralis X14873 455 148 146 749 28%
Ricinus communis L37580 301 350 98 749 36%
Skeletonema pseudocostatum X82155 67 586 96 749 51%
Toxoplasma gondii (plastid-like) U87145 184 451 114 749 32%
Zea mays Z00028 342 353 54 749 40%
Eukaryotic Mitochondrion
Acanthamoeba castellanii U03732 423 153 173 749 31%
Afrixalus fornasini NPA 276 386 87 749 31%
Albinaria caerulea X83390 412 73 264 749 22%
Alligator mississippiensis L28074 318 327 104 749 26%
Amblysomus hottentotus M95108 380 162 207 749 27%
Anas platyrhynchos L16770 610 15 124 749 15%
Anopheles gambiae L20934 94 229 426 749 24%
Anopheles quadrimaculatus L04272 39 458 252 749 29%
Antilocapra americana M55540 176 404 169 749 41%
Apis mellifera L06178 S51650 228 188 333 749 15%
Artemia franciscana X69067 195 12 542 749 5%
Ascaris suum X54253 126 389 234 749 30%
Aspergillus nidulans J01393 132 447 170 749 30%
Asterina pectinifera D16387 373 255 121 749 34%
Balaenoptera musculus X72204 344 293 112 749 46%
Bos taurus J01394 V00654 146 507 96 749 45%
Bufo boreas boreas Thesis, Goebel A. 442 85 222 749 9%
Bufo peltocephalus Thesis, Goebel A. 374 318 57 749 43%
Caenorhabditis elegans X54252 44 258 375 677 24%
Cafeteria roenbergensis AF193903 617 83 49 749 30%
Ceratophrys sp. Thesis, Goebel A. 128 531 90 749 33%
Chlamydomonas eugametos AF008237 106 496 147 749 41%
Chlamydomonas reinhardtii X54860 72 378 299 749 34%
Chondrus crispus Z30950 Z47547 184 312 253 749 26%
Chorthippus parallelus ESC X95574 295 260 194 749 15%
Chorthippus parallelus NOR X95575 307 261 181 749 15%
Chrysodidymus synuroideus NPA 479 177 93 749 34%
Chrysodidymus synuroideus mg AF222718 153 468 128 749 40%
Coscoroba coscoroba S76216 394 241 114 749 34%
Coturnix coturnix X57245 43 620 86 749 46%
Crithidia fasciculata X02548 8 390 228 626 31%
Crossostoma lacustre M91245 129 505 115 749 51%
Cygnus melancoryphus S76217 266 312 171 749 36%
Cyprinus carpio X61010 342 232 175 749 41%
Damaliscus pygargus M86499 95 520 134 749 49%
Daphnia pulex Z15015 368 10 371 749 10%
Dictyostelium discoideum D16466 293 398 58 749 32%
Didelphis virginiana Z29573 189 436 124 749 39%
Drosophila teissieri X54011 121 441 187 749 20%
Drosophila virilis X05914 168 264 317 749 17%
Drosophila yakuba X03240 127 428 194 749 20%
Eleutherodactylus coqui NPA 330 226 193 749 31%
Equus caballus X79547 268 277 204 749 32%
Farfantepenaeus notialis X84357 235 173 341 749 20%
Felis catus U20753 133 463 153 749 29%
Gallus gallus X52392 202 456 91 749 31%
Glycine max M16859 603 28 118 749 20%
Harpactes ardens U94810 322 204 223 749 28%
Harpochytrium 94 AY182005 457 108 184 749 37%
Herpetomonas megaseliae U01006 0 110 212 322 15%
Homo sapiens J01415 95 503 151 749 40%
Katharina tunicata U09810 27 528 194 749 21%
Latimeria chalumnae Z21921 251 250 248 749 24%
Leishmania tarentolae M10126 168 1 546 715 16%
Locusta migratoria X80245 272 124 353 749 8%
Loxodonta africana U60182 D50847 238 209 302 749 25%
Lumbricus terrestris U24570 68 545 136 749 21%
Lutreolina crassicaudata U33494 188 413 148 749 35%
Macropus giganteus X86941 186 418 145 749 37%
Magicicada tredecim NPA 122 31 596 749 9%
Marchantia polymorpha M68292 227 457 65 749 38%
Metridium senile S75445 391 193 165 749 27%
Monosiga brevicollis AF538053 508 58 183 749 30%
Mus musculus J01420 86 461 202 749 40%
Muscardinus avellanarius X84384 45 613 91 749 40%
Mytilus edulis M83756 94 395 260 749 22%
Nephroselmis olivacea AF110138 346 347 56 749 38%
Neurospora crassa L33367 68 564 117 749 35%
Ochromonas danica AF287134 535 93 121 749 29%
Oenothera berteriana X61277 127 532 90 749 26%
Oncorhynchus mykiss L29771 193 392 164 749 32%
Ornithorhynchus anatinus U33498 X83427 250 328 171 749 23%
Pan troglodytes D38113 426 137 186 749 27%
Paracentrotus lividus J04815 156 437 156 749 31%
Paramecium tetraurelia K01751 259 235 255 749 13%
Pedinomonas minor AF116775 568 64 117 749 24%
Penicillium chrysogenum Z23072 296 363 90 749 37%
Petromyzon marinus U11880 106 469 174 749 24%
Phalanger orientalis U33496 225 438 86 749 30%
Phascogale tapoatafa U33497 154 405 190 749 28%
Phoca vitulina X63726 607 87 55 749 23%
Physarum polycephalum X75592 521 110 118 749 17%
Phytophthora infestans U17009 238 429 82 749 42%
Pichia canadensis D49702 D31785 456 219 74 749 32%
Podospora anserina X14734 6 596 147 749 28%
Porphyra purpurea AF114794 308 411 30 749 36%
Protopterus dolloi L42813 168 263 318 749 26%
Prototheca wickerhamii X15435 296 430 23 749 51%
Puma concolor U33495 200 441 108 749 32%
Pylaiella littoralis X14874 558 40 151 749 22%
Rana catesbeiana X12841 95 574 80 749 49%
Rattus norvegicus J01438 342 190 217 749 23%
Reclinomonas americana AF007261 214 517 18 749 65%
Rhizopus stolonifer NPA 50 681 18 749 60%
Rhodomonas salina AF288090 108 417 224 749 34%
Saccharomyces cerevisiae V00704 53 614 82 749 39%
Salmo salar U12143 475 191 83 749 34%
Sceloporus undulatus L28075 329 292 128 749 43%
Schizosaccharomyces pombe X15738 462 177 110 749 31%
Scyliorhinus canicula Y16067 92 471 186 749 30%
Secale cereale Z14059 584 12 153 749 17%
Sphenodon punctatus L28076 148 478 123 749 32%
Spizellomyces punctatus AF404303 386 229 134 749 37%
Stenella coeruleoalba X78169 342 247 160 749 25%
Suillus sinuspaulianus L47584 214 429 106 749 29%
Tetrahymena pyriformis M12714 63 565 121 749 43%
Trachemys scripta L28077 20 644 85 749 42%
Triticum aestivum Z14078 150 403 196 749 30%
Trypanosoma brucei X02547 340 0 409 749 0%
Williopsis saturnus var. mrakii X71392 251 431 67 749 34%
Xenopus laevis M27605 200 394 155 749 40%
Zea mays X00794 236 364 149 749 33%
Eukaryotic Nuclear
Acanthamoeba castellanii U07413 627 28 94 749 25%
Agmasoma penaei NPA 52 619 78 749 55%
Ahnfeltia plicata Z14139 570 38 141 749 35%
Alexandrium fundyense U09048 232 215 302 749 21%
Amblyospora sp. U68474 200 418 131 749 26%
Ameson michaelis L15741 431 120 198 749 15%
Androctonus australis X77908 61 651 37 749 38%
Antonospora scoticae AF024655 310 339 100 749 23%
Artemia salina X01723 302 267 180 749 28%
Audouinella dasyae L26181 272 341 136 749 39%
Audouinella hermannii AF026040 24 613 112 749 44%
Aulacoseira ambigua X85404 423 247 79 749 22%
Babesia bigemina X59604 129 609 11 749 31%
Bacillidium sp. AF104087 291 215 243 749 31%
Balamuthia mandrillaris AF019071 160 493 96 749 34%
Balbiania investiens AF132294 104 515 130 749 40%
Bangia sp. (Northwest Territories/NWT) AF043355 88 462 199 749 31%
Bangiopsis subsimplex AF168627 79 590 80 749 42%
Batrachospermum gelatinosum AF026045 44 601 104 749 45%
Batrachospermum macrosporum AF026048 502 84 163 749 29%
Bonnemaisonia hamifera L26182 107 509 133 749 40%
Bostrychia moritziana AF203893 505 156 88 749 32%
Candida albicans M60302 121 522 106 749 43%
Ceramium rubrum L26183 155 339 255 749 34%
Chlorella luteoviridis X73998 75 371 303 749 37%
Chondrus crispus Z14140 377 116 256 749 43%
Compsopogon coeruleus AF087124 112 530 107 749 32%
Corallina officinalis L26184 222 102 425 749 30%
Crossodonthina koreana Z36893 216 366 167 749 33%
Cryptocercus punctulatus NPA 183 264 302 749 31%
Cryptococcus neoformans var. neoformans L05428 309 312 128 749 46%
Culicosporella lunata AF027683 467 173 109 749 39%
Cyanophora paradoxa X68483 279 280 190 749 37%
Cymatosira belgica X85387 97 594 58 749 34%
Cyrtohymena citrina AF164135 145 288 316 749 35%
Dixonielloa grisea L26187 250 265 234 749 32%
Drosophila melanogaster M21017 328 322 99 749 35%
Echinococcus granulosus U27015 228 408 113 749 23%
Edhazardia aedis AF027684 103 611 35 749 35%
Encephalitozoon cuniculi X98467 190 357 202 749 17%
Encephalitozoon hellem AF118143 477 99 173 749 17%
Encephalitozoon sp. L16867 207 328 214 749 16%
Endoreticulatus schubergi L39109 227 437 85 749 26%
Engelmanniella mobilis AF164134 147 424 178 749 38%
Enterocytozoonidae gen. sp. AF201911 165 442 142 749 44%
Erythrotrichia carnea L26189 146 396 207 749 38%
Euglypha rotunda X77692 339 195 215 749 44%
Euplotes aediculatus M14590 212 379 158 749 26%
Flabelliforma montana AJ252962 262 299 188 749 26%
Fragaria x ananassa X15590 448 103 198 749 28%
Gastrostyla steinei AF164133 504 73 172 749 33%
Gelidium vagum L26190 279 413 57 749 39%
Genicularia spirotaenia X74753 103 496 150 749 38%
Giardia ardeae Z17210 240 315 194 749 29%
Giardia intestinalis X52949 105 448 196 749 18%
Giardia muris X65063 53 573 123 749 27%
Glaucocystis nostochinearum X70803 478 161 110 749 34%
Gloeochaete wittrockiana X81901 92 577 80 749 39%
Glomus intraradices X58725 66 529 154 749 44%
Glugea atherinae U15987 530 153 66 749 39%
Glugea stephani AF056015 407 233 109 749 44%
Gracilariopsis sp. M33639 456 118 175 749 35%
Halymenia plana U33133 197 345 207 749 39%
Hexamita sp. Z17224 403 217 129 749 28%
Hildenbrandia rubra L19345 432 169 148 749 35%
Homo sapiens K03432 147 447 155 749 30%
Ichthyosporidium sp. L39110 405 235 109 749 27%
Janacekia debaisieuxi AJ252950 154 518 77 749 31%
Lecanora dispersa NPA 341 223 185 749 24%
Lilioceris lilii NPA 184 361 204 749 46%
Loma acerinae AJ252951 500 176 73 749 33%
Mastigamoeba balamuthi L23799 524 24 201 749 46%
Microgemma sp. AJ252952 256 401 92 749 38%
Microsporidium 57864 U90885 195 253 301 749 25%
Mus musculus X00686 240 296 213 749 33%
Mytilus edulis L24489 475 128 146 749 39%
Naegleria gruberi Thesis, Mullican J. 117 392 240 749 26%
Nemalion helminthoides L26196 43 506 200 749 44%
Nemalionopsis shawii AF506272 225 328 196 749 44%
Nosema algerae AF069063 460 152 137 749 27%
Nosema apis U97150 245 252 252 749 31%
Nosema necatrix U11051 339 207 203 749 22%
Okanagana utahensis U06478 310 173 266 749 39%
Onychodromus quadricornutus X53485 261 42 446 749 26%
Ophiopholis aculeata L28056 262 278 209 749 24%
Oxytricha granulifera AF164122 16 659 74 749 38%
Oxytricha longa AF164125 86 511 152 749 39%
Palmaria palmata Z14142 246 278 225 749 42%
Paraurostyla weissei AF164127 250 301 198 749 35%
Paruroleptus lepisma AF164132 438 191 120 749 26%
Paulinella chromatophora X81811 463 181 105 749 39%
Placopecten magellanicus X53899 144 359 246 749 29%
Plasmodium falciparum (A gene) M19172 62 477 210 749 47%
Plasmodium falciparum (S gene) M19173 513 113 123 749 27%
Plasmodium vivax (A gene) U07367 59 561 129 749 44%
Plasmodium vivax (O gene) U93095 318 222 209 749 38%
Plasmodium vivax (S gene) U07368 245 318 186 749 36%
Pleistophora hippoglossoideos AJ252953 445 157 147 749 31%
Pleistophora sp. U10342 393 231 125 749 33%
Pleurotricha lanceolota AF164128 210 353 186 749 31%
Plocamiocolax pulvinata U09618 208 457 84 749 38%
Polydispyrenia simulii AJ252960 360 325 64 749 25%
Porphyra miniata NF AF175540 155 457 137 749 21%
Porphyridium aerugineum L27635 184 434 131 749 36%
Reticulitermes flavipes NPA 301 323 125 749 39%
Rhodella maculata U21217 280 350 119 749 36%
Rhodochaete parvula AF139462 275 323 151 749 41%
Rhodogorgon carriebowensis AF006089 147 465 137 749 41%
Rhodymenia leptophylla U09621 440 81 228 749 36%
Saccharomyces cerevisiae U53879 181 342 226 749 41%
Spraguea lophii AF033197 225 470 54 749 27%
Staurastrum sp. M752 X74752 406 211 132 749 32%
Strongylocentrotus purpuratus L28055 115 489 145 749 32%
Stylonychia lemnae AF164124 379 150 220 749 33%
Stylonychia mytilus AF164123 588 29 132 749 28%
Thalassiosira eccentrica X85396 482 123 144 749 36%
Thelohania solenopsae AF031538 417 267 65 749 24%
Thelohania sp. AF031537 318 262 169 749 18%
Thorea hispida AF506273 55 532 162 749 46%
Thorea violacea AF026042 177 494 78 749 36%
Thorea violacea AF506274 90 451 208 749 48%
Toxoplasma gondii (P) X75453 273 296 180 749 37%
Trachipleistophora hominis AJ002605 43 649 57 749 39%
Tritrichomonas foetus M81842 463 155 131 749 41%
Uroleptus gallina AF164130 134 379 236 749 39%
Uroleptus pisces AF164131 326 252 171 749 34%
Urostyla grandis AF164129 628 60 61 749 30%
Vairimorpha necatrix Y00266 M24612 380 155 214 749 20%
Vairimorpha sp. Argentina AF031539 349 229 171 749 28%
Vavraia culicis AJ252961 411 115 223 749 30%
Visvesvaria acridophagus AF024658 205 478 66 749 39%
Weiseria palustris AF132544 398 254 97 749 30%
Xenopus laevis X04025 182 491 76 749 35%
  1. Only canonical base pairs (G-C,C-G,A-U,U-A,G-U,U-G) are considered.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.