Haloferax volcanii Methanosprillum hungatei
Comparative Base-pairs1 439 432
750 Structure Predictions    
Total Base-pairs 358,484 335,829
Total Unique Base-pairs2 4,679 5,013
Unique Base-pairs (opt)3 4804a 10%4b 447 9%
Unique Base-pairs (subopts) 4,1995a 90%5b 4,566 91%
Unique Correct Base-pairs (opt) 3506a 73%6b 198 44%
Prediction Accuracy7 80% 46%
Unique Correct Base-pairs (opt + subopts) 4018a 9%8b 352 7%
Prediction Accuracy9 91% 81%
Unique Incorrect Base-pairs (opt) 13010a 27%10b 249 56%
Unique Incorrect Base-pairs (opt + subopts) 4,27811a 91%11b 4,661 93%
1000 Structure Predictions    
Total Base-pairs 478,075 447,762
Total Unique Base-pairs 6,092 6,242
Unique Base-pairs (opt) 480 8% 447 7%
Unique Base-pairs (subopts) 5,612 92% 5,795 93%
Unique Correct Base-pairs (opt) 350 73% 198 44%
Unique Correct Base-pairs (opt + subopts) 403 7% 358 6%
Unique Incorrect Base-pairs (opt) 130 27% 249 56%
Unique Incorrect Base-pairs (opt + subopts) 5,689 93% 5,884 94%

† Each population is for a specific 16S rRNA sequence folded for one optimal predictions and 749 to 999 suboptimal structure predictions.
1 Total number of comparative G:C, A:U and G:U base-pairs.
2 Total number of unique base-pairs predicted by MFold in the optimal and suboptimal structure predictions.
3 (opt), Optimal or minimum free energy structure prediction; (subopts), Suboptimal structure predictions.
4a Total unique base-pairs in the optimal MFold strucure prediction.
4b Percentage of total unique base-pairs predicted that are from the optimal structure predictions.
5a Total unique base-pairs from the suboptimal MFold structure predictions.
5b Percentage of total unique base-pairs predicted that are from the suboptimal structure predictions.
6a Total unique correct base-pairs in the optimal MFold structure prediction.
6b Percentage of base-pairs in the optimal MFold structure prediction which are unique and correct.
7 Comparative structure prediction accuracy based on unique correct base-pairs in the optimal MFold structure prediction only.
8a Total unique correct base-pairs from the optimal and all suboptimal MFold structure predictions.
8b Percentage of all unique base-pairs predicted which are correct.
9 Comparative structure prediction accuracy based on unique correct base-pairs from the MFold optimal and all suboptimal structure predictions.
10a Total unique incorrect base-pairs in the optimal MFold structure prediction.
10b Percentage of base-pairs in the optimal MFold structure prediction which are unique and incorrect.
11a Total unique incorrect base-pairs from the optimal and all suboptimal MFold structure predictions.
11b Percentage of all unique base-pairs predicted which are incorrect.