Accession Suboptimals Better Than Optimal Suboptimals Worse Than Optimal Suboptimals Same as Optimal Total Suboptimals Optimal Accuracy1
Archaea
Aeropyrum pernix AP000062 53 648 48 749 65%
Archaeoglobus fulgidus X05567 AE000965 38 704 7 749 57%
Haloarcula marismortui rrnA X61688 627 110 12 749 58%
Haloarcula marismortui rrnB X61689 330 380 39 749 67%
Halobacterium sp. AE005128 541 184 24 749 51%
Haloferax volcanii K00421 420 287 42 749 77%
Methanobacterium formicicum M36508 15 723 11 749 71%
Methanococcus jannaschii U67517 L77117 198 549 2 749 55%
Methanococcus vannielii M36507 387 354 8 749 53%
Methanospirillum hungatei M60880 61 657 31 749 63%
Methanothermobacter thermautotrophicus AE000930 384 293 72 749 62%
Natronobacterium innermongoliae AF009601 77 654 18 749 73%
Natronorubrum bangense Y14028 570 155 24 749 64%
Pyrococcus abyssi AJ248283 84 657 8 749 68%
Pyrococcus furiosus U20163 92 647 10 749 62%
Pyrococcus horikoshii AP000001 64 667 18 749 68%
Pyrodictium occultum M21087 3 743 3 749 58%
Sulfolobus acidocaldarius D14876 295 393 61 749 58%
Sulfolobus P2 NPA2 232 459 58 749 51%
Sulfolobus solfataricus X03235 295 393 61 749 58%
Thermococcus celer M21529 45 698 6 749 74%
Thermoplasma acidophilum AL445067 M38637 324 395 30 749 60%
Thermoproteus tenax M35966 146 591 12 749 65%
Bacteria
Acidobacterium capsulatum D26171 371 362 16 749 44%
Acinetobacter calcoaceticus M34139 656 71 22 749 43%
Actinomyces israelii X82450 733 15 1 749 25%
Aeromonas hydrophila X60407 490 241 18 749 48%
Agrobacterium tumefaciens M11223 251 401 97 749 56%
Allochromatium vinosum M26629 265 471 13 749 42%
Anabaena sp. X59559 287 451 11 749 51%
Aquifex aeolicus AE000709 AE000751 447 272 30 749 59%
Aquifex pyrophilus M83548 277 420 52 749 60%
Arthrobacter globiformis M23411 485 244 20 749 46%
Azorhizobium caulinodans D11342 591 148 10 749 43%
Bacillus anthracis X55059 20 724 5 749 55%
Bacillus cereus X55060 27 718 4 749 68%
Bacillus halodurans AB013373 51 694 4 749 68%
Bacillus subtilis K00637 427 268 54 749 53%
Bacteroides fragilis M61006 7 741 1 749 66%
Bartonella bacilliformis Z11683 511 224 14 749 47%
Bartonella henselae M73229 656 82 11 749 48%
Bartonella quintana M11927 500 238 11 749 48%
Beggiatoa sp. 1401-13 L40997 26 703 20 749 56%
Bordetella bronchiseptica U04948 0 749 0 749 67%
Bordetella parapertussis U04949 14 729 6 749 63%
Bordetella pertussis U04950 10 737 2 749 60%
Borrelia burgdorferi M88329 247 486 16 749 49%
Borrelia hermsii U42292 185 556 8 749 51%
Brachyspira hyodysenteriae U23035 12 727 10 749 47%
Bradyrhizobium japonicum Z35330 606 129 14 749 50%
Brevinema andersonii L31543 338 354 57 749 48%
Brucella melitensis L26166 706 39 4 749 52%
Buchnera sp. APS AP000398 0 749 0 749 56%
Burkholderia mallei S55008 372 344 33 749 45%
Burkholderia sp. U37342 5 742 2 749 56%
Campylobacter jejuni Z29326 163 584 2 749 62%
Campylobacter sputorum X67775 182 545 22 749 50%
Chlamydia muridarum AE002280 308 402 39 749 52%
Chlamydia trachomatis U68443 288 429 32 749 52%
Chlamydophila pneumoniae L06108 598 144 7 749 50%
Chlamydophila psittaci U68447 314 383 52 749 50%
Chlorobium vibrioforme M62791 581 159 9 749 45%
Chlorogloeopsis sp. PCC 7518 X68780 612 129 8 749 47%
Chromohalobacter marismortui X87222 274 453 22 749 45%
Citrobacter freundii M59291 215 453 81 749 41%
Clostridium botulinum F L37593 331 396 22 749 63%
Clostridium difficile X73450 586 157 6 749 51%
Clostridium innocuum M23732 6 731 12 749 58%
Clostridium perfringens M69264 715 26 8 749 40%
Clostridium tetani X74770 11 735 3 749 54%
Comamonas testosteroni M11224 608 98 43 749 48%
Corynebacterium diphtheriae X84248 261 479 9 749 36%
Coxiella burnetii M21291 24 714 11 749 50%
Cristispira CP1 U42638 593 139 17 749 39%
Deferribacter thermophilus U75602 63 670 16 749 58%
Deinococcus radiodurans M21413 19 730 0 749 62%
Desulfovibrio desulfuricans M34113 378 362 9 749 46%
Dichelobacter nodosus M35016 63 665 21 749 55%
Edwardsiella tarda AF015259 28 713 8 749 61%
Enterococcus faecalis Y18293 284 460 5 749 64%
Enterococcus faecium AF070223 100 636 13 749 62%
environ.Eubacteria clone W15 NPA 11 735 3 749 64%
Epulopiscium sp. M99572 604 116 29 749 32%
Erysipelothrix rhusiopathiae M23728 96 649 4 749 60%
Escherichia coli J01695 39 650 60 749 53%
Eubacterium brachy Z36272 82 662 5 749 62%
Francisella tularensis Z21931 715 10 24 749 39%
Frankia sp. M55343 158 573 18 749 45%
Fusobacterium necrophorum X74408 253 476 20 749 41%
Fusobacterium nucleatum subsp. nucleatum M58683 0 749 0 749 66%
Gemmata obscuriglobus X56305 76 668 5 749 55%
Geotoga subterranea L10659 736 11 2 749 47%
Gluconacetobacter liquefaciens X75617 748 1 0 749 37%
Haemobartonella felis U95297 479 261 9 749 35%
Haemophilus influenzae X87977 299 312 138 749 41%
Haemophilus influenzae (operons A-F) U32741 U32744 U32755 U32847 U32697 U32708 398 268 83 749 45%
Halomonas halodenitrificans L04942 742 5 2 749 34%
Helicobacter pylori M88157 5 738 6 749 47%
Heliobacterium chlorum M11212 712 33 4 749 38%
Holophaga foetida X77215 152 566 31 749 49%
Isosphaera pallida X64372 377 360 12 749 44%
Klebsiella pneumoniae X80684 112 513 124 749 45%
Lactobacillus acidophilus M58802 111 623 15 749 54%
Lactococcus lactis subsp. lactis AE006456 402 336 11 749 61%
Legionella pneumophila M59157 109 609 31 749 45%
Leptonema illini M88719 150 590 9 749 49%
Leptospira interrogans X17547 360 384 5 749 56%
Leptospirillum ferriphilum AF356830 18 728 3 749 47%
Listeria monocytogenes M58822 103 646 0 749 57%
Mesorhizobium loti AP003001 717 31 1 749 46%
Methylobacterium sp. Z23160 2 746 1 749 50%
Methylococcus capsulatus X72771 29 706 14 749 32%
Micrococcus luteus M38242 579 152 18 749 34%
Microcystis aeruginosa U03402 Z28699 13 732 4 749 59%
Mycobacterium avium X52918 284 451 14 749 35%
Mycobacterium leprae X56657 338 397 14 749 21%
Mycobacterium tuberculosis X52917 360 378 11 749 22%
Mycoplasma capricolum X00921 208 537 4 749 48%
Mycoplasma gallisepticum M22441 2 744 3 749 54%
Mycoplasma genitalium U39694 253 421 75 749 50%
Mycoplasma hyopneumoniae Y00149 0 746 3 749 68%
Mycoplasma mycoides M23943 305 435 9 749 35%
Mycoplasma pneumoniae M29061 113 627 9 749 55%
Myxococcus xanthus M34114 26 720 3 749 50%
Neisseria gonorrhoeae X07714 27 718 4 749 57%
Neisseria meningitidis AE002364 127 610 12 749 59%
Nocardia asteroides X80606 24 720 5 749 37%
Oscillatoria agardhii X84811 17 714 18 749 65%
Pasteurella multocida M35018 43 694 12 749 42%
Petrotoga miotherma L10657 3 742 4 749 59%
Pirellula marina X62912 608 105 36 749 32%
Pirellula staleyi M34126 582 160 7 749 45%
Planctomycetaceae Schlesner 670 X81948 686 54 9 749 53%
Plesiomonas shigelloides X74688 49 694 6 749 49%
Pleurocapsa sp. X78681 321 405 23 749 47%
Porphyromonas gingivalis L16492 196 534 19 749 36%
Proteus vulgaris X07652 618 122 9 749 50%
Pseudomonas aeruginosa M34133 9 734 6 749 50%
Pseudomonas putida D84020 647 99 3 749 50%
Pseudomonas sp. U37339 179 565 5 749 54%
Psychrobacter pacificensis AB016054 629 108 12 749 44%
Rhodobium orientis D30792 394 320 35 749 55%
Rhodoblastus acidophilus M34128 142 593 14 749 51%
Rhodococcus erythropolis AF001265 115 623 11 749 42%
Rickettsia bellii U11014 428 292 29 749 56%
Rickettsia prowazekii M21789 224 474 51 749 56%
Rickettsia rickettsii L36217 347 376 26 749 53%
Salmonella typhimurium X80681 366 350 33 749 48%
Serratia marcescens M59160 533 183 33 749 46%
Shewanella putrefaciens X81623 539 201 9 749 46%
Shigella dysenteriae X96966 659 76 14 749 45%
Spirochaeta aurantia M57740 18 723 8 749 58%
Staphylococcus aureus L36472 68 671 10 749 52%
Streptobacillus moniliformis Z35305 353 345 51 749 33%
Streptococcus mutans X58303 49 697 3 749 58%
Streptococcus pneumoniae X58312 16 723 10 749 68%
Streptococcus pyogenes X59029 193 508 48 749 36%
Streptomyces acidiscabies D63865 321 428 0 749 52%
Streptomyces albidoflavus Z76676 266 477 6 749 47%
Streptomyces albus X53163 471 201 77 749 47%
Streptomyces ambofaciens M27245 697 52 0 749 46%
Streptomyces bikiniensis X79851 305 400 44 749 44%
Streptomyces bluensis X79324 154 494 101 749 46%
Streptomyces bottropensis D63868 735 11 3 749 40%
Streptomyces brasiliensis X53162 49 664 36 749 50%
Streptomyces caelestis X80824 531 195 23 749 48%
Streptomyces coelicolor Y00411 178 534 37 749 45%
Streptomyces diastaticus X53161 38 697 14 749 54%
Streptomyces diastatochromogenes D63867 98 646 5 749 48%
Streptomyces espinosus X80826 216 523 10 749 42%
Streptomyces eurythermus D63870 505 234 10 749 47%
Streptomyces felleus Z76681 266 477 6 749 47%
Streptomyces galbus X79325 108 585 56 749 44%
Streptomyces glaucescens X79322 15 734 0 749 65%
Streptomyces gougerotii Z76687 735 14 0 749 43%
Streptomyces griseus X61478 73 584 92 749 39%
Streptomyces hygroscopicus X79853 96 640 13 749 45%
Streptomyces intermedius Z76686 143 461 145 749 49%
Streptomyces lavendulae X53173 3 742 4 749 61%
Streptomyces limosus Z76679 266 477 6 749 47%
Streptomyces lincolnensis X79854 235 509 5 749 41%
Streptomyces macrosporus Z68099 359 385 5 749 46%
Streptomyces mashuensis X79323 117 620 12 749 66%
Streptomyces megasporus Z68100 62 685 2 749 58%
Streptomyces neyagawaensis D63869 441 296 12 749 43%
Streptomyces nodosus AF114033 332 408 9 749 44%
Streptomyces odorifer Z76682 268 477 4 749 47%
Streptomyces ornatus X79326 263 330 156 749 32%
Streptomyces pseudogriseolus X80827 48 695 6 749 65%
Streptomyces purpureus X53170 292 205 252 749 41%
Streptomyces rimosus X62884 216 514 19 749 44%
Streptomyces rutgersensis Z76688 735 14 0 749 43%
Streptomyces sampsonii D63871 41 702 6 749 65%
Streptomyces scabiei D63862 599 143 7 749 40%
Streptomyces setonii D63872 242 429 78 749 45%
Streptomyces sp. D63866 608 135 6 749 48%
Streptomyces subrutilus X80825 201 531 17 749 44%
Streptomyces tendae D63873 238 457 54 749 50%
Streptomyces thermodiastaticus Z68101 388 333 28 749 43%
Streptomyces thermolineatus Z68097 275 469 5 749 46%
Streptomyces thermoviolaceus Z68096 396 319 34 749 46%
Streptomyces thermovulgaris Z68098 469 267 13 749 47%
Synechococcus sp. PCC 6301 X03538 77 670 2 749 51%
Synechocystis sp. PCC 6803 D64000 D90916 712 29 8 749 35%
Thermomicrobium roseum M34115 313 413 23 749 47%
Thermotoga maritima M21774 333 401 15 749 62%
Thermus aquaticus L09663 366 367 16 749 59%
Thermus thermophilus X07998 59 683 7 749 60%
Treponema pallidum (rRNA A) AE001204 49 699 1 749 52%
Tropheryma whipplei mw040 X99636 41 704 4 749 56%
Ureaplasma urealyticum AE002112 140 596 13 749 60%
Vibrio cholerae X76337 191 535 23 749 57%
Vibrio parahaemolyticus X56580 26 714 9 749 41%
Xanthomonas albilineans X95918 357 364 28 749 40%
Xanthomonas campestris NPA 739 10 0 749 37%
Xylella fastidiosa AE003861 254 433 62 749 38%
Yersinia pestis L37604 73 668 8 749 55%
Yersinia pseudotuberculosis Z21939 113 629 7 749 53%
Eukaryotic Chloroplast
Apodanthes sp NPA 34 698 17 749 48%
Astasia longa X14386 26 713 10 749 45%
Babesia bovis U06105 40 704 5 749 50%
Chlamydomonas humicola AF374186 0 749 0 749 67%
Chlamydomonas reinhardtii J01395 146 599 4 749 55%
Chlorella vulgaris AB001684 48 690 11 749 71%
Corethron criophilum NPA 463 269 17 749 46%
Cryptomonas sp. X56805 531 163 55 749 37%
Cyanidium caldarium X52985 46 703 0 749 52%
Cyanophora paradoxa X81840 99 639 11 749 55%
Cynomorium coccineum U67743 352 390 7 749 27%
Cytinus ruber U47845 96 650 3 749 46%
Emiliania huxleyi X82156 423 326 0 749 52%
Euglena gracilis X12890 V00159 642 85 22 749 19%
Glaucocystis nostochinearum X82496 165 576 8 749 55%
Gloeochaete wittrockiana X82495 199 521 29 749 49%
Heterosigma akashiwo M82860 29 703 17 749 62%
Hydnora africana U67745 0 745 4 749 58%
Marchantia polymorpha X04465 109 628 12 749 59%
Mitrastema yamamotoi U67742 574 81 94 749 27%
Nicotiana tabacum V00165 25 717 7 749 40%
Palmaria palmata Z18289 200 519 30 749 44%
Pilostyles thurberi U67741 238 460 51 749 41%
Plasmodium falciparum (plastid-like) X57167 X95275 186 558 5 749 27%
Plasmodium vivax AF040974 658 91 0 749 38%
Polytoma obtusum AF374187 32 700 17 749 40%
Polytoma oviforme AF374188 129 523 97 749 64%
Polytoma uvella AF374189 177 531 41 749 32%
Pylaiella littoralis X14873 201 514 34 749 30%
Ricinus communis L37580 43 706 0 749 43%
Skeletonema pseudocostatum X82155 581 167 1 749 41%
Toxoplasma gondii (plastid-like) U87145 14 734 1 749 43%
Zea mays Z00028 250 474 25 749 41%
Eukaryotic Mitochondrion
Acanthamoeba castellanii U03732 298 418 33 749 32%
Afrixalus fornasini NPA 697 23 29 749 24%
Albinaria caerulea X83390 26 653 70 749 34%
Alligator mississippiensis L28074 14 727 8 749 32%
Amblysomus hottentotus M95108 380 162 207 749 27%
Anas platyrhynchos L16770 453 286 10 749 26%
Anopheles gambiae L20934 94 229 426 749 24%
Anopheles quadrimaculatus L04272 312 434 3 749 27%
Antilocapra americana M55540 128 574 47 749 42%
Apis mellifera L06178 S51650 32 679 38 749 18%
Artemia franciscana X69067 195 12 542 749 5%
Ascaris suum X54253 665 72 12 749 13%
Aspergillus nidulans J01393 132 447 170 749 30%
Asterina pectinifera D16387 189 557 3 749 38%
Balaenoptera musculus X72204 210 528 11 749 49%
Bos taurus J01394 V00654 259 453 37 749 45%
Bufo boreas boreas Thesis, Goebel A. 1 739 9 749 47%
Bufo peltocephalus Thesis, Goebel A. 50 682 17 749 49%
Caenorhabditis elegans X54252 44 258 375 677 24%
Cafeteria roenbergensis AF193903 590 133 26 749 30%
Ceratophrys sp. Thesis, Goebel A. 47 698 4 749 40%
Chlamydomonas eugametos AF008237 4 734 11 749 49%
Chlamydomonas reinhardtii X54860 72 378 299 749 34%
Chondrus crispus Z30950 Z47547 155 567 27 749 27%
Chorthippus parallelus ESC X95574 37 614 98 749 24%
Chorthippus parallelus NOR X95575 38 610 101 749 24%
Chrysodidymus synuroideus NPA 336 410 3 749 35%
Chrysodidymus synuroideus mg AF222718 535 189 25 749 35%
Coscoroba coscoroba S76216 109 611 29 749 37%
Coturnix coturnix X57245 624 71 54 749 32%
Crithidia fasciculata X02548 416 202 8 626 15%
Crossostoma lacustre M91245 542 198 9 749 42%
Cygnus melancoryphus S76217 113 628 8 749 41%
Cyprinus carpio X61010 20 724 5 749 55%
Damaliscus pygargus M86499 514 231 4 749 20%
Daphnia pulex Z15015 68 559 122 749 19%
Dictyostelium discoideum D16466 73 663 13 749 36%
Didelphis virginiana Z29573 487 257 5 749 35%
Drosophila teissieri X54011 121 441 187 749 20%
Drosophila virilis X05914 612 85 52 749 12%
Drosophila yakuba X03240 127 428 194 749 20%
Eleutherodactylus coqui NPA 740 0 9 749 21%
Equus caballus X79547 14 733 2 749 45%
Farfantepenaeus notialis X84357 107 633 9 749 24%
Felis catus U20753 60 662 27 749 31%
Gallus gallus X52392 576 152 21 749 26%
Glycine max M16859 561 147 41 749 20%
Harpactes ardens U94810 322 204 223 749 28%
Harpochytrium 94 AY182005 457 108 184 749 37%
Herpetomonas megaseliae U01006 213 60 49 322 9%
Homo sapiens J01415 44 681 24 749 42%
Katharina tunicata U09810 749 0 0 749 5%
Latimeria chalumnae Z21921 59 669 21 749 29%
Leishmania tarentolae M10126 22 548 145 715 22%
Locusta migratoria X80245 634 24 91 749 6%
Loxodonta africana U60182 D50847 134 518 97 749 26%
Lumbricus terrestris U24570 301 361 87 749 19%
Lutreolina crassicaudata U33494 625 97 27 749 21%
Macropus giganteus X86941 393 304 52 749 36%
Magicicada tredecim NPA 91 628 30 749 10%
Marchantia polymorpha M68292 293 415 41 749 38%
Metridium senile S75445 15 730 4 749 38%
Monosiga brevicollis AF538053 6 738 5 749 49%
Mus musculus J01420 86 461 202 749 40%
Muscardinus avellanarius X84384 29 705 15 749 40%
Mytilus edulis M83756 355 379 15 749 22%
Nephroselmis olivacea AF110138 6 740 3 749 43%
Neurospora crassa L33367 607 122 20 749 22%
Ochromonas danica AF287134 535 93 121 749 29%
Oenothera berteriana X61277 461 272 16 749 18%
Oncorhynchus mykiss L29771 553 176 20 749 30%
Ornithorhynchus anatinus U33498 X83427 59 654 36 749 30%
Pan troglodytes D38113 670 54 25 749 25%
Paracentrotus lividus J04815 54 690 5 749 34%
Paramecium tetraurelia K01751 52 651 46 749 16%
Pedinomonas minor AF116775 432 272 45 749 27%
Penicillium chrysogenum Z23072 573 152 24 749 34%
Petromyzon marinus U11880 290 426 33 749 23%
Phalanger orientalis U33496 542 144 63 749 21%
Phascogale tapoatafa U33497 76 638 35 749 29%
Phoca vitulina X63726 333 398 18 749 31%
Physarum polycephalum X75592 521 110 118 749 17%
Phytophthora infestans U17009 68 680 1 749 48%
Pichia canadensis D49702 D31785 159 574 16 749 34%
Podospora anserina X14734 681 63 5 749 22%
Porphyra purpurea AF114794 569 132 48 749 33%
Protopterus dolloi L42813 35 710 4 749 32%
Prototheca wickerhamii X15435 362 368 19 749 50%
Puma concolor U33495 57 692 0 749 40%
Pylaiella littoralis X14874 392 288 69 749 24%
Rana catesbeiana X12841 619 95 35 749 36%
Rattus norvegicus J01438 9 738 2 749 36%
Reclinomonas americana AF007261 535 210 4 749 60%
Rhizopus stolonifer NPA 193 512 44 749 58%
Rhodomonas salina AF288090 634 25 90 749 26%
Saccharomyces cerevisiae V00704 675 68 6 749 31%
Salmo salar U12143 599 131 19 749 33%
Sceloporus undulatus L28075 329 292 128 749 43%
Schizosaccharomyces pombe X15738 28 718 3 749 40%
Scyliorhinus canicula Y16067 19 727 3 749 33%
Secale cereale Z14059 584 12 153 749 17%
Sphenodon punctatus L28076 718 28 3 749 23%
Spizellomyces punctatus AF404303 720 11 18 749 34%
Stenella coeruleoalba X78169 97 617 35 749 42%
Suillus sinuspaulianus L47584 342 383 24 749 29%
Tetrahymena pyriformis M12714 730 17 2 749 26%
Trachemys scripta L28077 591 101 57 749 24%
Triticum aestivum Z14078 731 0 18 749 17%
Trypanosoma brucei X02547 269 410 70 749 5%
Williopsis saturnus var. mrakii X71392 157 592 0 749 39%
Xenopus laevis M27605 188 550 11 749 41%
Zea mays X00794 581 152 16 749 30%
Eukaryotic Nuclear
Acanthamoeba castellanii U07413 75 480 194 749 30%
Agmasoma penaei NPA 435 298 16 749 43%
Ahnfeltia plicata Z14139 41 671 37 749 43%
Alexandrium fundyense U09048 232 215 302 749 21%
Amblyospora sp. U68474 356 343 50 749 25%
Ameson michaelis L15741 431 120 198 749 15%
Androctonus australis X77908 563 173 13 749 33%
Antonospora scoticae AF024655 627 60 62 749 20%
Artemia salina X01723 97 609 43 749 30%
Audouinella dasyae L26181 1 744 4 749 45%
Audouinella hermannii AF026040 0 749 0 749 46%
Aulacoseira ambigua X85404 375 338 36 749 22%
Babesia bigemina X59604 622 121 6 749 19%
Bacillidium sp. AF104087 291 215 243 749 31%
Balamuthia mandrillaris AF019071 160 493 96 749 34%
Balbiania investiens AF132294 254 481 14 749 39%
Bangia sp. (Northwest Territories/NWT) AF043355 614 95 40 749 30%
Bangiopsis subsimplex AF168627 704 36 9 749 37%
Batrachospermum gelatinosum AF026045 723 25 1 749 34%
Batrachospermum macrosporum AF026048 345 397 7 749 32%
Bonnemaisonia hamifera L26182 500 228 21 749 38%
Bostrychia moritziana AF203893 0 725 24 749 39%
Candida albicans M60302 276 410 63 749 42%
Ceramium rubrum L26183 12 715 22 749 37%
Chlorella luteoviridis X73998 544 165 40 749 34%
Chondrus crispus Z14140 8 698 43 749 45%
Compsopogon coeruleus AF087124 341 397 11 749 27%
Corallina officinalis L26184 69 663 17 749 36%
Crossodonthina koreana Z36893 186 534 29 749 33%
Cryptocercus punctulatus NPA 511 164 74 749 31%
Cryptococcus neoformans var. neoformans L05428 75 672 2 749 48%
Culicosporella lunata AF027683 467 173 109 749 39%
Cyanophora paradoxa X68483 56 675 18 749 39%
Cymatosira belgica X85387 720 24 5 749 30%
Cyrtohymena citrina AF164135 462 248 39 749 35%
Dixonielloa grisea L26187 30 712 7 749 34%
Drosophila melanogaster M21017 232 475 42 749 36%
Echinococcus granulosus U27015 56 681 12 749 23%
Edhazardia aedis AF027684 287 402 60 749 31%
Encephalitozoon cuniculi X98467 1 737 11 749 21%
Encephalitozoon hellem AF118143 269 472 8 749 20%
Encephalitozoon sp. L16867 35 706 8 749 21%
Endoreticulatus schubergi L39109 227 437 85 749 26%
Engelmanniella mobilis AF164134 0 734 15 749 42%
Enterocytozoonidae gen. sp. AF201911 94 603 52 749 45%
Erythrotrichia carnea L26189 395 211 143 749 37%
Euglypha rotunda X77692 213 521 15 749 45%
Euplotes aediculatus M14590 521 90 138 749 24%
Flabelliforma montana AJ252962 593 108 48 749 24%
Fragaria x ananassa X15590 181 528 40 749 32%
Gastrostyla steinei AF164133 193 390 166 749 35%
Gelidium vagum L26190 373 347 29 749 38%
Genicularia spirotaenia X74753 256 477 16 749 37%
Giardia ardeae Z17210 64 673 12 749 33%
Giardia intestinalis X52949 1 746 2 749 23%
Giardia muris X65063 9 732 8 749 29%
Glaucocystis nostochinearum X70803 589 146 14 749 34%
Gloeochaete wittrockiana X81901 555 184 10 749 35%
Glomus intraradices X58725 342 355 52 749 43%
Glugea atherinae U15987 169 557 23 749 42%
Glugea stephani AF056015 354 347 48 749 45%
Gracilariopsis sp. M33639 0 746 3 749 46%
Halymenia plana U33133 699 37 13 749 34%
Hexamita sp. Z17224 280 402 67 749 29%
Hildenbrandia rubra L19345 432 169 148 749 35%
Homo sapiens K03432 147 447 155 749 30%
Ichthyosporidium sp. L39110 209 501 39 749 29%
Janacekia debaisieuxi AJ252950 84 653 12 749 33%
Lecanora dispersa NPA 541 204 4 749 23%
Lilioceris lilii NPA 480 252 17 749 45%
Loma acerinae AJ252951 500 176 73 749 33%
Mastigamoeba balamuthi L23799 9 732 8 749 50%
Microgemma sp. AJ252952 207 529 13 749 38%
Microsporidium 57864 U90885 105 615 29 749 26%
Mus musculus X00686 74 608 67 749 34%
Mytilus edulis L24489 26 708 15 749 42%
Naegleria gruberi Thesis, Mullican J. 662 86 1 749 15%
Nemalion helminthoides L26196 0 749 0 749 46%
Nemalionopsis shawii AF506272 745 4 0 749 34%
Nosema algerae AF069063 271 452 26 749 29%
Nosema apis U97150 566 133 50 749 28%
Nosema necatrix U11051 169 572 8 749 24%
Okanagana utahensis U06478 254 440 55 749 39%
Onychodromus quadricornutus X53485 130 573 46 749 27%
Ophiopholis aculeata L28056 85 662 2 749 29%
Oxytricha granulifera AF164122 717 23 9 749 32%
Oxytricha longa AF164125 11 736 2 749 41%
Palmaria palmata Z14142 32 716 1 749 45%
Paraurostyla weissei AF164127 104 636 9 749 40%
Paruroleptus lepisma AF164132 57 683 9 749 34%
Paulinella chromatophora X81811 463 181 105 749 39%
Placopecten magellanicus X53899 144 359 246 749 29%
Plasmodium falciparum (A gene) M19172 307 436 6 749 46%
Plasmodium falciparum (S gene) M19173 65 649 35 749 30%
Plasmodium vivax (A gene) U07367 9 731 9 749 44%
Plasmodium vivax (O gene) U93095 318 222 209 749 38%
Plasmodium vivax (S gene) U07368 723 25 1 749 34%
Pleistophora hippoglossoideos AJ252953 727 9 13 749 27%
Pleistophora sp. U10342 393 231 125 749 33%
Pleurotricha lanceolota AF164128 495 168 86 749 29%
Plocamiocolax pulvinata U09618 533 211 5 749 33%
Polydispyrenia simulii AJ252960 53 689 7 749 28%
Porphyra miniata NF AF175540 34 623 92 749 23%
Porphyridium aerugineum L27635 184 434 131 749 36%
Reticulitermes flavipes NPA 0 749 0 749 43%
Rhodella maculata U21217 539 178 32 749 34%
Rhodochaete parvula AF139462 724 25 0 749 35%
Rhodogorgon carriebowensis AF006089 698 44 7 749 37%
Rhodymenia leptophylla U09621 137 604 8 749 39%
Saccharomyces cerevisiae U53879 441 259 49 749 41%
Spraguea lophii AF033197 84 629 36 749 29%
Staurastrum sp. M752 X74752 23 701 25 749 37%
Strongylocentrotus purpuratus L28055 60 655 34 749 33%
Stylonychia lemnae AF164124 379 150 220 749 33%
Stylonychia mytilus AF164123 68 587 94 749 35%
Thalassiosira eccentrica X85396 74 664 11 749 39%
Thelohania solenopsae AF031538 632 102 15 749 21%
Thelohania sp. AF031537 52 695 2 749 26%
Thorea hispida AF506273 553 194 2 749 38%
Thorea violacea AF026042 152 577 20 749 37%
Thorea violacea AF506274 410 334 5 749 44%
Toxoplasma gondii (P) X75453 273 296 180 749 37%
Trachipleistophora hominis AJ002605 504 231 14 749 34%
Tritrichomonas foetus M81842 629 117 3 749 39%
Uroleptus gallina AF164130 3 696 50 749 42%
Uroleptus pisces AF164131 6 739 4 749 40%
Urostyla grandis AF164129 0 732 17 749 40%
Vairimorpha necatrix Y00266 M24612 72 668 9 749 25%
Vairimorpha sp. Argentina AF031539 602 83 64 749 26%
Vavraia culicis AJ252961 0 748 1 749 42%
Visvesvaria acridophagus AF024658 192 545 12 749 39%
Weiseria palustris AF132544 336 398 15 749 31%
Xenopus laevis X04025 637 99 13 749 31%
  1. Only canonical base pairs (G-C,C-G,A-U,U-A,G-U,U-G) are considered.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.