Archaea   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Aeropyrum pernix AP000062 338 235 70% 38 21 55% 22 17 77% 23 0 0% 27 10 37% 3 0 0%
Archaeoglobus fulgidus X05567 AE000965 341 193 57% 32 0 0% 25 15 60% 19 0 0% 28 0 0% 3 0 0%
Haloarcula marismortui rrnA X61688 331 235 71% 32 12 38% 29 3 10% 15 9 60% 28 8 29% 3 0 0%
Haloarcula marismortui rrnB X61689 333 259 78% 32 18 56% 29 10 34% 15 9 60% 28 8 29% 3 0 0%
Halobacterium sp. AE005128 333 253 76% 32 27 84% 29 13 45% 14 12 86% 29 14 48% 3 0 0%
Haloferax volcanii K00421 333 285 86% 32 25 78% 29 16 55% 13 9 69% 29 15 52% 3 0 0%
Methanobacterium formicicum M36508 332 244 73% 31 18 58% 29 24 83% 16 9 56% 27 8 30% 3 0 0%
Methanococcus jannaschii U67517 L77117 339 232 68% 32 4 13% 29 0 0% 15 0 0% 27 0 0% 3 0 0%
Methanococcus vannielii M36507 330 222 67% 32 14 44% 30 0 0% 15 0 0% 27 0 0% 3 0 0%
Methanospirillum hungatei M60880 325 195 60% 32 0 0% 29 0 0% 16 3 19% 27 0 0% 3 0 0%
Methanothermobacter thermautotrophicus AE000930 335 254 76% 32 18 56% 28 7 25% 16 0 0% 28 0 0% 3 0 0%
Natronobacterium innermongoliae AF009601 335 275 82% 32 19 59% 29 0 0% 14 3 21% 29 0 0% 3 0 0%
Natronorubrum bangense Y14028 334 273 82% 32 19 59% 29 0 0% 14 3 21% 29 0 0% 3 0 0%
Pyrococcus abyssi AJ248283 344 260 76% 34 22 65% 24 2 8% 20 13 65% 28 8 29% 3 0 0%
Pyrococcus furiosus U20163 341 249 73% 29 8 28% 25 0 0% 19 0 0% 27 8 30% 3 0 0%
Pyrococcus horikoshii AP000001 343 260 76% 34 22 65% 24 2 8% 20 13 65% 28 8 29% 3 0 0%
Pyrodictium occultum M21087 334 219 66% 39 14 36% 23 0 0% 22 0 0% 26 10 38% 3 0 0%
Sulfolobus acidocaldarius D14876 332 232 70% 39 20 51% 23 0 0% 23 0 0% 26 9 35% 3 0 0%
Sulfolobus P2 NPA2 334 209 63% 39 11 28% 23 0 0% 22 0 0% 26 10 38% 3 0 0%
Sulfolobus solfataricus X03235 332 232 70% 39 20 51% 23 0 0% 23 0 0% 26 9 35% 3 0 0%
Thermococcus celer M21529 339 260 77% 33 20 61% 28 14 50% 17 11 65% 27 18 67% 3 0 0%
Thermoplasma acidophilum AL445067 M38637 333 243 73% 32 13 41% 30 0 0% 16 9 56% 26 0 0% 3 0 0%
Thermoproteus tenax M35966 340 253 74% 41 19 46% 23 0 0% 23 15 65% 26 10 38% 3 0 0%
Bacteria   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acidobacterium capsulatum D26171 312 183 59% 24 2 8% 27 0 0% 14 0 0% 24 0 0% 0 0 0%
Acinetobacter calcoaceticus M34139 331 185 56% 32 7 22% 27 0 0% 15 3 20% 16 0 0% 13 0 0%
Actinomyces israelii X82450 325 121 37% 34 2 6% 23 0 0% 9 0 0% 16 0 0% 0 0 0%
Aeromonas hydrophila X60407 343 215 63% 32 14 44% 22 0 0% 19 3 16% 17 0 0% 13 0 0%
Agrobacterium tumefaciens M11223 332 230 69% 27 9 33% 27 0 0% 12 0 0% 28 0 0% 3 0 0%
Allochromatium vinosum M26629 324 157 48% 32 0 0% 27 0 0% 14 0 0% 16 0 0% 10 0 0%
Anabaena sp. X59559 333 192 58% 28 12 43% 27 0 0% 15 0 0% 26 0 0% 3 0 0%
Aquifex aeolicus AE000709 AE000751 358 279 78% 41 13 32% 22 0 0% 20 0 0% 19 0 0% 13 0 0%
Aquifex pyrophilus M83548 353 274 78% 41 13 32% 22 0 0% 20 0 0% 19 0 0% 13 0 0%
Arthrobacter globiformis M23411 340 200 59% 33 2 6% 26 7 27% 16 0 0% 25 0 0% 6 0 0%
Azorhizobium caulinodans D11342 326 195 60% 27 10 37% 27 2 7% 14 0 0% 27 0 0% 3 0 0%
Bacillus anthracis X55059 296 173 58% 32 16 50% 18 0 0% 21 0 0% 13 0 0% 13 0 0%
Bacillus cereus X55060 304 183 60% 31 12 39% 23 14 61% 21 3 14% 15 2 13% 13 0 0%
Bacillus halodurans AB013373 345 224 65% 32 14 44% 23 14 61% 20 2 10% 17 3 18% 13 0 0%
Bacillus subtilis K00637 346 212 61% 32 14 44% 23 14 61% 21 0 0% 16 0 0% 13 0 0%
Bacteroides fragilis M61006 338 227 67% 32 28 88% 23 7 30% 20 0 0% 16 0 0% 13 0 0%
Bartonella bacilliformis Z11683 314 202 64% 27 2 7% 27 0 0% 13 0 0% 27 0 0% 0 0 0%
Bartonella henselae M73229 316 209 66% 27 9 33% 27 0 0% 13 0 0% 27 0 0% 0 0 0%
Bartonella quintana M11927 332 204 61% 27 7 26% 27 0 0% 12 0 0% 28 0 0% 3 0 0%
Beggiatoa sp. 1401-13 L40997 327 179 55% 31 0 0% 27 0 0% 14 0 0% 23 0 0% 6 0 0%
Bordetella bronchiseptica U04948 346 225 65% 31 14 45% 26 0 0% 17 0 0% 15 0 0% 13 0 0%
Bordetella parapertussis U04949 320 226 71% 30 14 47% 26 5 19% 17 7 41% 15 0 0% 13 8 62%
Bordetella pertussis U04950 320 186 58% 29 0 0% 26 0 0% 17 0 0% 15 0 0% 13 0 0%
Borrelia burgdorferi M88329 347 205 59% 34 13 38% 28 0 0% 15 3 20% 18 0 0% 13 0 0%
Borrelia hermsii U42292 344 197 57% 34 13 38% 28 0 0% 13 0 0% 18 0 0% 13 0 0%
Brachyspira hyodysenteriae U23035 324 158 49% 32 0 0% 26 0 0% 17 0 0% 22 0 0% 0 0 0%
Bradyrhizobium japonicum Z35330 332 220 66% 29 7 24% 27 0 0% 14 0 0% 27 0 0% 3 0 0%
Brevinema andersonii L31543 308 190 62% 30 5 17% 26 0 0% 16 0 0% 15 0 0% 13 0 0%
Brucella melitensis L26166 311 217 70% 27 7 26% 27 0 0% 11 0 0% 24 0 0% 0 0 0%
Buchnera sp. APS AP000398 323 166 51% 30 0 0% 23 0 0% 19 0 0% 17 0 0% 8 0 0%
Burkholderia mallei S55008 291 171 59% 16 0 0% 27 0 0% 15 0 0% 17 0 0% 10 0 0%
Burkholderia sp. U37342 334 224 67% 29 7 24% 24 0 0% 17 0 0% 15 0 0% 13 0 0%
Campylobacter jejuni Z29326 339 202 60% 31 10 32% 24 0 0% 17 0 0% 26 0 0% 5 0 0%
Campylobacter sputorum X67775 312 169 54% 21 7 33% 21 0 0% 22 20 91% 21 0 0% 23 0 0%
Chlamydia muridarum AE002280 347 218 63% 38 12 32% 23 0 0% 21 6 29% 16 0 0% 13 0 0%
Chlamydia trachomatis U68443 347 219 63% 38 12 32% 23 0 0% 21 6 29% 16 0 0% 13 0 0%
Chlamydophila pneumoniae L06108 351 226 64% 36 12 33% 23 7 30% 21 3 14% 16 0 0% 13 0 0%
Chlamydophila psittaci U68447 349 219 63% 35 12 34% 23 0 0% 20 0 0% 16 0 0% 13 0 0%
Chlorobium vibrioforme M62791 328 173 53% 30 19 63% 28 14 50% 16 0 0% 18 0 0% 10 0 0%
Chlorogloeopsis sp. PCC 7518 X68780 333 221 66% 28 12 43% 27 15 56% 14 0 0% 27 0 0% 3 0 0%
Chromohalobacter marismortui X87222 331 181 55% 32 7 22% 24 0 0% 18 0 0% 17 0 0% 9 0 0%
Citrobacter freundii M59291 319 159 50% 28 7 25% 24 0 0% 16 0 0% 16 0 0% 13 0 0%
Clostridium botulinum F L37593 317 232 73% 31 13 42% 26 14 54% 19 4 21% 24 7 29% 4 3 75%
Clostridium difficile X73450 317 199 63% 33 14 42% 28 13 46% 15 6 40% 27 0 0% 3 0 0%
Clostridium innocuum M23732 335 205 61% 32 16 50% 24 15 63% 22 0 0% 14 0 0% 13 0 0%
Clostridium perfringens M69264 332 205 62% 32 5 16% 26 14 54% 20 4 20% 23 7 30% 5 0 0%
Clostridium tetani X74770 331 184 56% 31 8 26% 26 0 0% 18 0 0% 25 0 0% 5 0 0%
Comamonas testosteroni M11224 343 212 62% 29 7 24% 25 0 0% 14 0 0% 17 0 0% 13 0 0%
Corynebacterium diphtheriae X84248 330 139 42% 34 7 21% 26 0 0% 16 0 0% 25 0 0% 1 0 0%
Coxiella burnetii M21291 319 188 59% 31 14 45% 22 0 0% 17 0 0% 16 0 0% 13 0 0%
Cristispira CP1 U42638 326 172 53% 33 0 0% 29 0 0% 17 0 0% 16 0 0% 9 0 0%
Deferribacter thermophilus U75602 352 244 69% 34 1 3% 23 0 0% 19 0 0% 19 0 0% 13 0 0%
Deinococcus radiodurans M21413 334 212 63% 33 7 21% 26 18 69% 14 9 64% 27 3 11% 3 0 0%
Desulfovibrio desulfuricans M34113 337 231 69% 36 8 22% 23 8 35% 20 13 65% 18 0 0% 13 8 62%
Dichelobacter nodosus M35016 346 218 63% 31 7 23% 26 0 0% 16 3 19% 17 0 0% 12 0 0%
Edwardsiella tarda AF015259 327 227 69% 31 14 45% 21 0 0% 6 3 50% 17 0 0% 0 0 0%
Enterococcus faecalis Y18293 308 244 79% 31 14 45% 23 14 61% 22 0 0% 16 0 0% 7 0 0%
Enterococcus faecium AF070223 333 235 71% 33 14 42% 23 14 61% 22 0 0% 16 0 0% 8 0 0%
environ.Eubacteria clone W15 NPA 318 218 69% 30 15 50% 17 0 0% 21 3 14% 18 3 17% 3 0 0%
Epulopiscium sp. M99572 312 171 55% 31 8 26% 28 20 71% 13 7 54% 28 0 0% 0 0 0%
Erysipelothrix rhusiopathiae M23728 327 200 61% 31 21 68% 24 0 0% 23 12 52% 12 0 0% 13 10 77%
Escherichia coli J01695 354 233 66% 31 7 23% 24 0 0% 18 0 0% 17 0 0% 13 0 0%
Eubacterium brachy Z36272 322 178 55% 30 12 40% 22 7 32% 24 0 0% 15 0 0% 12 0 0%
Francisella tularensis Z21931 339 170 50% 30 7 23% 26 0 0% 17 3 18% 17 0 0% 10 0 0%
Frankia sp. M55343 336 175 52% 33 0 0% 29 0 0% 15 0 0% 26 0 0% 3 0 0%
Fusobacterium necrophorum X74408 321 170 53% 32 10 31% 30 0 0% 13 0 0% 25 0 0% 2 0 0%
Fusobacterium nucleatum subsp. nucleatum M58683 323 190 59% 33 16 48% 26 0 0% 17 0 0% 24 0 0% 7 0 0%
Gemmata obscuriglobus X56305 314 207 66% 27 2 7% 20 7 35% 15 0 0% 28 0 0% 0 0 0%
Geotoga subterranea L10659 334 232 69% 29 10 34% 26 23 88% 13 0 0% 25 5 20% 7 0 0%
Gluconacetobacter liquefaciens X75617 334 183 55% 30 3 10% 27 0 0% 13 0 0% 28 0 0% 2 0 0%
Haemobartonella felis U95297 279 131 47% 30 0 0% 28 0 0% 18 0 0% 24 0 0% 3 0 0%
Haemophilus influenzae X87977 314 155 49% 30 7 23% 22 0 0% 17 3 18% 16 0 0% 8 0 0%
Haemophilus influenzae (operons A-F) U32741 U32744 U32755 U32847 U32697 U32708 348 189 54% 30 7 23% 22 0 0% 17 3 18% 17 0 0% 13 0 0%
Halomonas halodenitrificans L04942 338 159 47% 32 17 53% 24 7 29% 18 0 0% 17 0 0% 11 0 0%
Helicobacter pylori M88157 323 176 54% 26 3 12% 26 0 0% 12 0 0% 29 0 0% 3 0 0%
Heliobacterium chlorum M11212 329 197 60% 34 12 35% 25 0 0% 18 0 0% 23 0 0% 7 0 0%
Holophaga foetida X77215 331 195 59% 37 11 30% 27 0 0% 18 0 0% 16 0 0% 12 0 0%
Isosphaera pallida X64372 300 196 65% 31 18 58% 27 10 37% 8 3 38% 26 5 19% 6 0 0%
Klebsiella pneumoniae X80684 305 175 57% 30 7 23% 23 0 0% 18 0 0% 15 0 0% 13 0 0%
Lactobacillus acidophilus M58802 328 200 61% 31 9 29% 23 14 61% 20 0 0% 15 0 0% 13 0 0%
Lactococcus lactis subsp. lactis AE006456 344 247 72% 33 19 58% 23 14 61% 22 0 0% 16 0 0% 13 0 0%
Legionella pneumophila M59157 326 176 54% 31 7 23% 22 0 0% 17 0 0% 16 0 0% 13 0 0%
Leptonema illini M88719 337 193 57% 32 3 9% 29 4 14% 17 0 0% 24 0 0% 3 0 0%
Leptospira interrogans X17547 333 251 75% 34 14 41% 29 21 72% 16 8 50% 25 0 0% 3 0 0%
Leptospirillum ferriphilum AF356830 322 160 50% 35 7 20% 20 0 0% 17 0 0% 18 0 0% 12 0 0%
Listeria monocytogenes M58822 325 172 53% 31 5 16% 23 7 30% 22 0 0% 15 0 0% 13 0 0%
Mesorhizobium loti AP003001 332 241 73% 27 9 33% 27 0 0% 12 0 0% 28 0 0% 3 0 0%
Methylobacterium sp. Z23160 311 130 42% 28 0 0% 27 0 0% 14 0 0% 26 0 0% 3 0 0%
Methylococcus capsulatus X72771 318 116 36% 31 7 23% 26 0 0% 15 0 0% 17 0 0% 13 0 0%
Micrococcus luteus M38242 319 195 61% 30 11 37% 27 7 26% 17 3 18% 22 0 0% 5 0 0%
Microcystis aeruginosa U03402 Z28699 315 158 50% 25 1 4% 27 0 0% 13 0 0% 26 0 0% 0 0 0%
Mycobacterium avium X52918 323 135 42% 33 7 21% 27 0 0% 16 0 0% 16 0 0% 0 0 0%
Mycobacterium leprae X56657 346 85 25% 32 0 0% 23 0 0% 21 0 0% 17 0 0% 13 0 0%
Mycobacterium tuberculosis X52917 325 89 27% 32 0 0% 27 0 0% 18 0 0% 16 0 0% 0 0 0%
Mycoplasma capricolum X00921 333 159 48% 32 0 0% 29 0 0% 16 0 0% 14 0 0% 13 0 0%
Mycoplasma gallisepticum M22441 329 171 52% 31 12 39% 28 0 0% 19 3 16% 14 0 0% 13 0 0%
Mycoplasma genitalium U39694 329 208 63% 33 5 15% 28 7 25% 20 3 15% 14 0 0% 13 0 0%
Mycoplasma hyopneumoniae Y00149 337 239 71% 32 5 16% 25 9 36% 22 17 77% 14 6 43% 13 8 62%
Mycoplasma mycoides M23943 305 116 38% 30 0 0% 18 0 0% 13 0 0% 0 0 0% 10 0 0%
Mycoplasma pneumoniae M29061 315 194 62% 31 5 16% 28 7 25% 19 3 16% 14 0 0% 13 0 0%
Myxococcus xanthus M34114 337 181 54% 36 14 39% 23 0 0% 23 0 0% 14 0 0% 13 0 0%
Neisseria gonorrhoeae X07714 345 218 63% 30 14 47% 22 0 0% 17 0 0% 16 0 0% 13 0 0%
Neisseria meningitidis AE002364 346 252 73% 30 14 47% 22 0 0% 17 0 0% 16 0 0% 13 0 0%
Nocardia asteroides X80606 320 94 29% 33 0 0% 28 0 0% 16 0 0% 25 0 0% 1 0 0%
Oscillatoria agardhii X84811 325 211 65% 28 17 61% 27 20 74% 15 10 67% 25 8 32% 0 0 0%
Pasteurella multocida M35018 334 166 50% 31 7 23% 23 0 0% 19 0 0% 15 0 0% 13 0 0%
Petrotoga miotherma L10657 282 162 57% 26 7 27% 26 22 85% 12 6 50% 12 0 0% 6 0 0%
Pirellula marina X62912 312 130 42% 28 0 0% 25 0 0% 17 0 0% 24 0 0% 3 0 0%
Pirellula staleyi M34126 334 199 60% 29 3 10% 26 0 0% 12 0 0% 26 0 0% 6 0 0%
Planctomycetaceae Schlesner 670 X81948 329 225 68% 29 2 7% 26 0 0% 12 0 0% 29 5 17% 2 0 0%
Plesiomonas shigelloides X74688 310 174 56% 30 14 47% 24 0 0% 18 3 17% 16 0 0% 13 0 0%
Pleurocapsa sp. X78681 325 164 50% 27 8 30% 27 0 0% 14 0 0% 26 0 0% 0 0 0%
Porphyromonas gingivalis L16492 316 141 45% 32 0 0% 21 0 0% 21 0 0% 16 0 0% 13 0 0%
Proteus vulgaris X07652 353 245 69% 31 14 45% 24 0 0% 18 3 17% 17 0 0% 13 0 0%
Pseudomonas aeruginosa M34133 323 180 56% 32 7 22% 25 0 0% 16 0 0% 15 0 0% 13 0 0%
Pseudomonas putida D84020 345 224 65% 32 18 56% 26 7 27% 16 0 0% 17 0 0% 12 0 0%
Pseudomonas sp. U37339 328 203 62% 30 7 23% 26 0 0% 16 3 19% 16 0 0% 13 0 0%
Psychrobacter pacificensis AB016054 346 197 57% 32 13 41% 24 0 0% 17 3 18% 17 0 0% 12 0 0%
Rhodobium orientis D30792 314 231 74% 26 9 35% 27 0 0% 13 0 0% 27 0 0% 0 0 0%
Rhodoblastus acidophilus M34128 316 201 64% 28 2 7% 27 0 0% 14 0 0% 26 0 0% 3 0 0%
Rhodococcus erythropolis AF001265 336 173 51% 33 0 0% 28 0 0% 16 0 0% 26 0 0% 3 0 0%
Rickettsia bellii U11014 340 224 66% 28 13 46% 27 7 26% 12 3 25% 29 0 0% 3 0 0%
Rickettsia prowazekii M21789 340 230 68% 28 9 32% 27 0 0% 12 3 25% 29 0 0% 3 0 0%
Rickettsia rickettsii L36217 323 214 66% 27 9 33% 27 0 0% 12 3 25% 26 0 0% 2 0 0%
Salmonella typhimurium X80681 345 192 56% 31 14 45% 24 0 0% 18 3 17% 16 0 0% 13 0 0%
Serratia marcescens M59160 330 202 61% 31 7 23% 24 0 0% 16 0 0% 17 0 0% 13 0 0%
Shewanella putrefaciens X81623 345 226 66% 31 14 45% 24 0 0% 18 3 17% 17 0 0% 11 0 0%
Shigella dysenteriae X96966 332 214 64% 30 7 23% 22 0 0% 17 0 0% 17 0 0% 10 0 0%
Spirochaeta aurantia M57740 332 209 63% 33 12 36% 24 0 0% 18 8 44% 16 0 0% 13 10 77%
Staphylococcus aureus L36472 342 206 60% 31 2 6% 23 14 61% 20 0 0% 17 0 0% 13 0 0%
Streptobacillus moniliformis Z35305 322 141 44% 33 0 0% 25 0 0% 19 0 0% 22 0 0% 7 0 0%
Streptococcus mutans X58303 279 165 59% 28 19 68% 21 0 0% 6 3 50% 14 0 0% 0 0 0%
Streptococcus pneumoniae X58312 279 173 62% 28 19 68% 22 14 64% 7 3 43% 13 0 0% 0 0 0%
Streptococcus pyogenes X59029 267 112 42% 25 0 0% 21 0 0% 7 3 43% 13 0 0% 0 0 0%
Streptomyces acidiscabies D63865 340 193 57% 33 26 79% 28 23 82% 13 7 54% 28 20 71% 4 1 25%
Streptomyces albidoflavus Z76676 327 181 55% 33 8 24% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces albus X53163 271 153 56% 31 7 23% 17 0 0% 13 0 0% 8 0 0% 1 0 0%
Streptomyces ambofaciens M27245 340 183 54% 33 19 58% 28 17 61% 13 0 0% 28 0 0% 4 0 0%
Streptomyces bikiniensis X79851 339 184 54% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces bluensis X79324 339 198 58% 33 8 24% 27 0 0% 14 0 0% 27 0 0% 5 0 0%
Streptomyces bottropensis D63868 340 197 58% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces brasiliensis X53162 274 144 53% 31 8 26% 17 0 0% 13 0 0% 0 0 0% 0 0 0%
Streptomyces caelestis X80824 339 187 55% 33 19 58% 28 17 61% 13 0 0% 28 0 0% 4 0 0%
Streptomyces coelicolor Y00411 335 184 55% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces diastaticus X53161 255 142 56% 23 8 35% 15 0 0% 9 0 0% 0 0 0% 0 0 0%
Streptomyces diastatochromogenes D63867 340 191 56% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces espinosus X80826 338 176 52% 33 11 33% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces eurythermus D63870 339 179 53% 33 19 58% 27 17 63% 14 0 0% 27 0 0% 5 0 0%
Streptomyces felleus Z76681 327 181 55% 33 8 24% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces galbus X79325 336 167 50% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces glaucescens X79322 338 169 50% 33 19 58% 28 17 61% 13 0 0% 28 0 0% 4 0 0%
Streptomyces gougerotii Z76687 328 203 62% 33 8 24% 28 0 0% 13 0 0% 25 0 0% 0 0 0%
Streptomyces griseus X61478 337 144 43% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces hygroscopicus X79853 338 169 50% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces intermedius Z76686 326 202 62% 33 8 24% 28 0 0% 13 0 0% 25 0 0% 0 0 0%
Streptomyces lavendulae X53173 266 177 67% 28 8 29% 15 0 0% 9 0 0% 0 0 0% 0 0 0%
Streptomyces limosus Z76679 327 181 55% 33 8 24% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces lincolnensis X79854 339 169 50% 33 0 0% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces macrosporus Z68099 329 186 57% 33 8 24% 27 17 63% 14 0 0% 27 0 0% 1 0 0%
Streptomyces mashuensis X79323 335 224 67% 33 25 76% 27 22 81% 14 8 57% 27 19 70% 5 2 40%
Streptomyces megasporus Z68100 334 176 53% 33 19 58% 25 17 68% 16 0 0% 26 0 0% 2 0 0%
Streptomyces neyagawaensis D63869 340 175 51% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces nodosus AF114033 339 185 55% 33 7 21% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces odorifer Z76682 328 181 55% 33 8 24% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces ornatus X79326 335 132 39% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces pseudogriseolus X80827 338 197 58% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces purpureus X53170 257 126 49% 23 0 0% 15 0 0% 9 0 0% 0 0 0% 0 0 0%
Streptomyces rimosus X62884 333 174 52% 31 13 42% 28 0 0% 14 0 0% 27 0 0% 5 0 0%
Streptomyces rutgersensis Z76688 328 203 62% 33 8 24% 28 0 0% 13 0 0% 25 0 0% 0 0 0%
Streptomyces sampsonii D63871 340 188 55% 33 8 24% 27 0 0% 14 0 0% 27 0 0% 5 0 0%
Streptomyces scabiei D63862 342 196 57% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces setonii D63872 340 187 55% 33 8 24% 27 0 0% 14 0 0% 27 0 0% 5 0 0%
Streptomyces sp. D63866 339 190 56% 33 26 79% 28 23 82% 13 7 54% 28 20 71% 4 1 25%
Streptomyces subrutilus X80825 338 179 53% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces tendae D63873 339 206 61% 33 0 0% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces thermodiastaticus Z68101 326 155 48% 33 18 55% 27 17 63% 14 0 0% 27 0 0% 1 0 0%
Streptomyces thermolineatus Z68097 330 169 51% 33 10 30% 28 0 0% 13 0 0% 28 0 0% 0 0 0%
Streptomyces thermoviolaceus Z68096 330 170 52% 33 18 55% 27 17 63% 14 0 0% 27 0 0% 1 0 0%
Streptomyces thermovulgaris Z68098 334 190 57% 33 18 55% 27 17 63% 14 0 0% 26 0 0% 2 0 0%
Synechococcus sp. PCC 6301 X03538 332 189 57% 26 0 0% 27 0 0% 15 0 0% 26 0 0% 3 0 0%
Synechocystis sp. PCC 6803 D64000 D90916 334 183 55% 27 1 4% 27 0 0% 14 0 0% 27 0 0% 3 0 0%
Thermomicrobium roseum M34115 335 163 49% 34 17 50% 23 17 74% 24 0 0% 19 0 0% 7 0 0%
Thermotoga maritima M21774 354 248 70% 33 22 67% 22 7 32% 20 0 0% 19 3 16% 13 0 0%
Thermus aquaticus L09663 326 222 68% 32 17 53% 29 17 59% 12 3 25% 25 0 0% 4 0 0%
Thermus thermophilus X07998 341 207 61% 32 15 47% 27 18 67% 15 3 20% 21 0 0% 9 0 0%
Treponema pallidum (rRNA A) AE001204 348 225 65% 33 0 0% 24 0 0% 19 0 0% 18 0 0% 13 0 0%
Tropheryma whipplei X99636 340 212 62% 31 17 55% 25 0 0% 20 0 0% 21 0 0% 7 0 0%
Ureaplasma urealyticum AE002112 326 209 64% 33 12 36% 27 15 56% 20 11 55% 14 6 43% 13 10 77%
Vibrio cholerae X76337 347 237 68% 30 7 23% 22 0 0% 16 0 0% 18 0 0% 11 0 0%
Vibrio parahaemolyticus X56580 316 143 45% 29 0 0% 21 0 0% 23 0 0% 15 0 0% 13 0 0%
Xanthomonas albilineans X95918 334 166 50% 32 7 22% 24 0 0% 18 0 0% 17 0 0% 9 0 0%
Xanthomonas campestris NPA 327 193 59% 28 7 25% 21 14 67% 17 0 0% 17 0 0% 13 0 0%
Xylella fastidiosa AE003861 344 163 47% 32 7 22% 24 0 0% 18 0 0% 17 0 0% 13 0 0%
Yersinia pestis L37604 327 207 63% 30 7 23% 22 0 0% 17 3 18% 17 0 0% 10 0 0%
Yersinia pseudotuberculosis Z21939 333 206 62% 30 9 30% 24 4 17% 18 11 61% 17 0 0% 12 8 67%
Eukaryotic Chloroplast   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Apodanthes sp NPA 322 190 59% 31 8 26% 23 0 0% 9 0 0% 28 0 0% 3 0 0%
Astasia longa X14386 332 135 41% 26 3 12% 25 0 0% 18 0 0% 24 0 0% 3 0 0%
Babesia bovis U06105 307 136 44% 32 10 31% 13 8 62% 21 3 14% 18 4 22% 7 4 57%
Chlamydomonas humicola AF374186 276 145 53% 29 7 24% 27 0 0% 15 0 0% 21 0 0% 0 0 0%
Chlamydomonas reinhardtii J01395 321 182 57% 28 6 21% 27 17 63% 16 7 44% 23 10 43% 3 0 0%
Chlorella vulgaris AB001684 333 248 74% 28 8 29% 27 24 89% 16 10 63% 24 14 58% 3 0 0%
Corethron criophilum NPA 321 186 58% 26 7 27% 23 7 30% 17 0 0% 22 0 0% 3 0 0%
Cryptomonas sp. X56805 328 157 48% 28 0 0% 23 0 0% 14 0 0% 25 0 0% 3 0 0%
Cyanidium caldarium X52985 328 171 52% 29 3 10% 23 0 0% 13 0 0% 25 0 0% 3 0 0%
Cyanophora paradoxa X81840 329 199 60% 31 13 42% 25 0 0% 14 0 0% 26 0 0% 3 0 0%
Cynomorium coccineum U67743 308 82 27% 28 0 0% 23 17 74% 17 0 0% 22 0 0% 3 0 0%
Cytinus ruber U47845 320 148 46% 29 3 10% 22 0 0% 14 0 0% 25 0 0% 3 0 0%
Emiliania huxleyi X82156 322 203 63% 27 13 48% 23 20 87% 15 7 47% 24 14 58% 2 0 0%
Euglena gracilis X12890 V00159 321 79 25% 32 0 0% 28 0 0% 17 0 0% 24 0 0% 3 0 0%
Glaucocystis nostochinearum X82496 325 198 61% 34 26 76% 23 7 30% 17 0 0% 23 0 0% 5 0 0%
Gloeochaete wittrockiana X82495 326 198 61% 35 16 46% 23 0 0% 16 0 0% 23 0 0% 5 0 0%
Heterosigma akashiwo M82860 329 172 52% 31 0 0% 20 0 0% 23 0 0% 16 0 0% 9 0 0%
Hydnora africana U67745 307 177 58% 32 6 19% 21 0 0% 12 0 0% 26 0 0% 3 0 0%
Marchantia polymorpha X04465 317 178 56% 28 9 32% 23 17 74% 14 7 50% 25 8 32% 3 0 0%
Mitrastema yamamotoi U67742 304 108 36% 26 0 0% 23 0 0% 13 0 0% 24 0 0% 3 0 0%
Nicotiana tabacum V00165 321 146 45% 28 0 0% 21 0 0% 17 0 0% 24 0 0% 3 0 0%
Palmaria palmata Z18289 322 174 54% 25 1 4% 23 0 0% 13 0 0% 25 0 0% 3 0 0%
Pilostyles thurberi U67741 299 108 36% 36 9 25% 23 0 0% 5 0 0% 15 0 0% 0 0 0%
Plasmodium falciparum (plastid-like) X57167 X95275 311 103 33% 35 0 0% 20 0 0% 18 0 0% 22 0 0% 3 0 0%
Plasmodium vivax AF040974 196 117 60% 23 8 35% 19 16 84% 8 8 100% 14 0 0% 0 0 0%
Polytoma obtusum AF374187 274 128 47% 29 0 0% 24 0 0% 16 0 0% 24 0 0% 1 0 0%
Polytoma oviforme AF374188 273 184 67% 32 20 63% 27 20 74% 16 12 75% 22 0 0% 0 0 0%
Polytoma uvella AF374189 334 126 38% 33 0 0% 23 0 0% 13 0 0% 21 0 0% 13 0 0%
Pylaiella littoralis X14873 317 117 37% 34 0 0% 25 0 0% 15 0 0% 22 0 0% 3 0 0%
Ricinus communis L37580 313 146 47% 27 0 0% 26 0 0% 15 0 0% 26 0 0% 0 0 0%
Skeletonema pseudocostatum X82155 319 181 57% 30 14 47% 23 14 61% 17 3 18% 22 0 0% 2 0 0%
Toxoplasma gondii U87145 332 129 39% 26 0 0% 22 0 0% 10 6 60% 26 0 0% 4 0 0%
Zea mays Z00028 326 168 52% 27 0 0% 27 0 0% 14 0 0% 26 0 0% 3 0 0%
Eukaryotic Mitochondrion   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U03732 305 123 40% 35 4 11% 13 0 0% 21 0 0% 24 0 0% 7 0 0%
Afrixalus fornasini NPA 150 59 39% 35 0 0% 22 6 27% 2 0 0% 0 0 0% 0 0 0%
Albinaria caerulea X83390 134 40 30% 23 0 0% 18 0 0% 3 0 0% 0 0 0% 0 0 0%
Alligator mississippiensis L28074 144 48 33% 37 6 16% 15 0 0% 9 0 0% 3 0 0% 0 0 0%
Amblysomus hottentotus M95108 163 56 34% 36 0 0% 22 6 27% 5 0 0% 0 0 0% 3 0 0%
Anas platyrhynchos L16770 164 34 21% 36 0 0% 25 0 0% 5 0 0% 0 0 0% 3 0 0%
Anopheles gambiae L20934 143 47 33% 35 0 0% 17 0 0% 1 0 0% 3 0 0% 0 0 0%
Anopheles quadrimaculatus L04272 143 58 41% 35 0 0% 17 0 0% 0 0 0% 2 0 0% 0 0 0%
Antilocapra americana M55540 176 72 41% 38 20 53% 22 10 45% 7 0 0% 0 0 0% 3 0 0%
Apis mellifera L06178 S51650 137 27 20% 27 0 0% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Artemia franciscana X69067 127 9 7% 23 0 0% 16 0 0% 3 0 0% 0 0 0% 0 0 0%
Ascaris suum X54253 117 32 27% 23 8 35% 16 7 44% 2 0 0% 0 0 0% 0 0 0%
Aspergillus nidulans J01393 289 116 40% 43 0 0% 18 0 0% 18 0 0% 16 0 0% 3 0 0%
Asterina pectinifera D16387 141 61 43% 33 7 21% 16 0 0% 8 0 0% 3 0 0% 0 0 0%
Balaenoptera musculus X72204 164 92 56% 38 7 18% 18 3 17% 9 4 44% 0 0 0% 3 0 0%
Bos taurus J01394 V00654 164 81 49% 36 14 39% 20 9 45% 6 0 0% 0 0 0% 3 0 0%
Bufo boreas boreas Thesis, Goebel A. 150 20 13% 38 0 0% 23 0 0% 3 0 0% 3 0 0% 0 0 0%
Bufo peltocephalus Thesis, Goebel A. 146 52 36% 38 31 82% 23 10 43% 4 0 0% 3 0 0% 0 0 0%
Caenorhabditis elegans X54252 124 28 23% 23 7 30% 17 5 29% 2 0 0% 0 0 0% 0 0 0%
Cafeteria roenbergensis AF193903 300 107 36% 42 18 43% 24 0 0% 21 0 0% 6 0 0% 24 0 0%
Ceratophrys sp. Thesis, Goebel A. 146 65 45% 34 3 9% 19 0 0% 4 0 0% 0 0 0% 0 0 0%
Chlamydomonas eugametos AF008237 260 131 50% 32 7 22% 20 0 0% 13 0 0% 13 0 0% 2 0 0%
Chlamydomonas reinhardtii X54860 199 73 37% 29 8 28% 15 0 0% 26 12 46% 0 0 0% 3 0 0%
Chondrus crispus Z30950 Z47547 281 93 33% 31 2 6% 23 1 4% 12 2 17% 20 0 0% 3 0 0%
Chorthippus parallelus ESC X95574 142 20 14% 27 8 30% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Chorthippus parallelus NOR X95575 142 20 14% 27 8 30% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Chrysodidymus synuroideus NPA 324 138 43% 42 8 19% 13 0 0% 19 0 0% 21 0 0% 8 0 0%
Chrysodidymus synuroideus mg AF222718 339 162 48% 42 8 19% 13 0 0% 20 0 0% 22 5 23% 7 0 0%
Coscoroba coscoroba S76216 167 81 49% 36 0 0% 25 0 0% 5 0 0% 0 0 0% 3 0 0%
Coturnix coturnix X57245 154 71 46% 33 30 91% 24 0 0% 4 0 0% 0 0 0% 3 0 0%
Crithidia fasciculata X02548 47 17 36% 0 0 0% 8 0 0% 0 0 0% 0 0 0% 0 0 0%
Crossostoma lacustre M91245 170 87 51% 36 19 53% 22 15 68% 5 0 0% 0 0 0% 3 0 0%
Cygnus melancoryphus S76217 170 79 46% 36 4 11% 25 3 12% 5 0 0% 0 0 0% 3 0 0%
Cyprinus carpio X61010 163 84 52% 35 0 0% 22 7 32% 5 0 0% 0 0 0% 3 3 100%
Damaliscus pygargus M86499 164 74 45% 35 28 80% 20 9 45% 6 0 0% 1 0 0% 2 0 0%
Daphnia pulex Z15015 139 19 14% 23 0 0% 18 0 0% 3 0 0% 0 0 0% 0 0 0%
Dictyostelium discoideum D16466 253 109 43% 38 5 13% 14 0 0% 19 0 0% 27 0 0% 2 0 0%
Didelphis virginiana Z29573 165 71 43% 36 19 53% 22 1 5% 5 0 0% 0 0 0% 3 0 0%
Drosophila teissieri X54011 140 40 29% 38 0 0% 17 0 0% 2 0 0% 1 0 0% 0 0 0%
Drosophila virilis X05914 161 37 23% 39 0 0% 19 0 0% 3 0 0% 0 0 0% 0 0 0%
Drosophila yakuba X03240 140 40 29% 38 0 0% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Eleutherodactylus coqui NPA 132 52 39% 35 5 14% 8 0 0% 9 0 0% 0 0 0% 0 0 0%
Equus caballus X79547 163 67 41% 35 6 17% 17 0 0% 11 0 0% 0 0 0% 3 0 0%
Farfantepenaeus notialis X84357 147 41 28% 32 0 0% 25 0 0% 2 0 0% 3 0 0% 0 0 0%
Felis catus U20753 160 49 31% 36 17 47% 22 0 0% 6 0 0% 0 0 0% 3 0 0%
Gallus gallus X52392 158 69 44% 34 0 0% 21 0 0% 7 0 0% 0 0 0% 3 0 0%
Glycine max M16859 294 82 28% 26 0 0% 0 0 0% 16 0 0% 15 0 0% 63 0 0%
Harpactes ardens U94810 148 54 36% 36 5 14% 18 0 0% 9 0 0% 0 0 0% 3 0 0%
Harpochytrium sp. JEL94 AY182005 229 105 46% 35 14 40% 25 0 0% 31 0 0% 0 0 0% 2 0 0%
Herpetomonas megaseliae U01006 25 5 20% 0 0 0% 9 0 0% 0 0 0% 0 0 0% 0 0 0%
Homo sapiens J01415 164 71 43% 39 7 18% 27 14 52% 3 0 0% 0 0 0% 3 3 100%
Katharina tunicata U09810 127 37 29% 23 0 0% 25 0 0% 0 0 0% 3 0 0% 0 0 0%
Latimeria chalumnae Z21921 149 50 34% 34 0 0% 20 0 0% 6 0 0% 0 0 0% 3 0 0%
Leishmania tarentolae M10126 47 9 19% 0 0 0% 8 0 0% 0 0 0% 0 0 0% 0 0 0%
Locusta migratoria X80245 133 14 11% 25 0 0% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Loxodonta africana U60182 D50847 163 56 34% 35 0 0% 22 0 0% 5 0 0% 0 0 0% 3 0 0%
Lumbricus terrestris U24570 120 36 30% 26 0 0% 24 0 0% 0 0 0% 2 0 0% 0 0 0%
Lutreolina crassicaudata U33494 170 60 35% 38 14 37% 22 10 45% 5 0 0% 0 0 0% 3 0 0%
Macropus giganteus X86941 162 69 43% 37 6 16% 21 9 43% 5 0 0% 0 0 0% 3 0 0%
Magicicada tredecim NPA 131 15 11% 22 0 0% 17 0 0% 0 0 0% 0 0 0% 0 0 0%
Marchantia polymorpha M68292 260 149 57% 61 5 8% 15 0 0% 21 0 0% 14 0 0% 36 0 0%
Metridium senile S75445 214 76 36% 28 0 0% 18 0 0% 18 0 0% 0 0 0% 2 0 0%
Monosiga brevicollis AF538053 285 114 40% 28 0 0% 7 0 0% 27 0 0% 15 0 0% 15 0 0%
Mus musculus J01420 159 64 40% 35 17 49% 23 8 35% 5 0 0% 0 0 0% 3 0 0%
Muscardinus avellanarius X84384 163 77 47% 38 7 18% 21 5 24% 5 3 60% 0 0 0% 3 0 0%
Mytilus edulis M83756 129 37 29% 32 0 0% 17 7 41% 7 0 0% 12 0 0% 0 0 0%
Nephroselmis olivacea AF110138 321 155 48% 38 6 16% 23 0 0% 12 0 0% 26 0 0% 3 0 0%
Neurospora crassa L33367 214 97 45% 53 12 23% 6 0 0% 15 0 0% 19 6 32% 23 0 0%
Ochromonas danica AF287134 340 113 33% 37 13 35% 13 0 0% 21 0 0% 23 0 0% 6 0 0%
Oenothera berteriana X61277 291 99 34% 28 0 0% 0 0 0% 31 0 0% 14 0 0% 48 8 17%
Oncorhynchus mykiss L29771 162 66 41% 36 0 0% 21 7 33% 4 0 0% 0 0 0% 3 0 0%
Ornithorhynchus anatinus U33498 X83427 158 52 33% 37 0 0% 22 0 0% 2 0 0% 0 0 0% 3 0 0%
Pan troglodytes D38113 165 60 36% 36 3 8% 23 0 0% 3 0 0% 0 0 0% 3 0 0%
Paracentrotus lividus J04815 148 58 39% 28 4 14% 23 0 0% 0 0 0% 3 0 0% 0 0 0%
Paramecium tetraurelia K01751 229 47 21% 57 0 0% 23 0 0% 17 0 0% 12 0 0% 13 0 0%
Pedinomonas minor AF116775 251 79 31% 33 0 0% 25 0 0% 14 0 0% 0 0 0% 3 0 0%
Penicillium chrysogenum Z23072 249 129 52% 41 0 0% 18 0 0% 14 0 0% 20 0 0% 3 0 0%
Petromyzon marinus U11880 137 45 33% 39 4 10% 22 0 0% 3 0 0% 2 0 0% 1 0 0%
Phalanger orientalis U33496 160 53 33% 36 6 17% 22 9 41% 5 0 0% 0 0 0% 3 0 0%
Phascogale tapoatafa U33497 176 67 38% 34 0 0% 25 0 0% 4 0 0% 0 0 0% 3 0 0%
Phoca vitulina X63726 158 37 23% 37 15 41% 21 0 0% 6 0 0% 0 0 0% 3 0 0%
Physarum polycephalum X75592 285 69 24% 45 0 0% 15 0 0% 22 0 0% 1 0 0% 30 0 0%
Phytophthora infestans U17009 322 168 52% 42 13 31% 23 0 0% 17 0 0% 22 0 0% 3 0 0%
Pichia canadensis D49702 D31785 221 95 43% 42 6 14% 19 0 0% 14 0 0% 9 0 0% 13 0 0%
Podospora anserina X14734 232 76 33% 55 17 31% 0 0 0% 24 3 13% 8 0 0% 28 0 0%
Porphyra purpurea AF114794 289 128 44% 31 0 0% 21 0 0% 12 0 0% 21 8 38% 3 0 0%
Protopterus dolloi L42813 163 59 36% 32 0 0% 23 0 0% 2 0 0% 0 0 0% 3 0 0%
Prototheca wickerhamii X15435 319 205 64% 47 14 30% 32 7 22% 12 0 0% 18 0 0% 13 0 0%
Puma concolor U33495 159 51 32% 36 20 56% 21 0 0% 6 0 0% 0 0 0% 3 0 0%
Pylaiella littoralis X14874 261 80 31% 39 0 0% 22 0 0% 13 0 0% 26 0 0% 3 0 0%
Rana catesbeiana X12841 159 76 48% 37 25 68% 25 10 40% 3 0 0% 2 0 0% 1 0 0%
Rattus norvegicus J01438 157 41 26% 34 4 12% 25 6 24% 3 0 0% 0 0 0% 3 0 0%
Reclinomonas americana AF007261 345 256 74% 55 31 56% 14 7 50% 23 0 0% 22 4 18% 9 4 44%
Rhizopus stolonifer NPA 280 186 66% 44 23 52% 12 0 0% 30 14 47% 11 4 36% 7 4 57%
Rhodomonas salina AF288090 301 127 42% 43 12 28% 26 0 0% 13 0 0% 21 0 0% 3 0 0%
Saccharomyces cerevisiae V00704 271 139 51% 44 3 7% 21 3 14% 10 0 0% 14 0 0% 13 0 0%
Salmo salar U12143 161 64 40% 36 7 19% 22 6 27% 4 0 0% 0 0 0% 3 0 0%
Sceloporus undulatus L28075 152 82 54% 35 0 0% 20 7 35% 5 3 60% 0 0 0% 3 0 0%
Schizosaccharomyces pombe X15738 291 119 41% 33 0 0% 13 0 0% 21 0 0% 19 0 0% 5 0 0%
Scyliorhinus canicula Y16067 157 61 39% 36 0 0% 26 6 23% 3 0 0% 0 0 0% 3 0 0%
Secale cereale Z14059 281 71 25% 39 0 0% 0 0 0% 19 0 0% 21 0 0% 54 0 0%
Sphenodon punctatus L28076 149 57 38% 33 10 30% 20 0 0% 4 0 0% 1 0 0% 1 0 0%
Spizellomyces punctatus AF404303 243 99 41% 33 0 0% 23 14 61% 22 8 36% 0 0 0% 3 0 0%
Stenella coeruleoalba X78169 162 54 33% 37 3 8% 15 0 0% 12 0 0% 0 0 0% 3 0 0%
Suillus sinuspaulianus L47584 342 140 41% 65 9 14% 53 0 0% 10 0 0% 12 0 0% 33 0 0%
Tetrahymena pyriformis M12714 241 118 49% 62 37 60% 15 0 0% 17 6 35% 19 0 0% 18 0 0%
Trachemys scripta L28077 143 69 48% 35 17 49% 19 0 0% 7 0 0% 0 0 0% 3 0 0%
Triticum aestivum Z14078 281 124 44% 39 0 0% 0 0 0% 21 0 0% 25 0 0% 48 0 0%
Trypanosoma brucei X02547 50 0 0% 0 0 0% 9 0 0% 0 0 0% 0 0 0% 0 0 0%
Williopsis saturnus var. mrakii X71392 229 94 41% 40 4 10% 15 2 13% 18 10 56% 9 0 0% 13 0 0%
Xenopus laevis M27605 161 81 50% 37 11 30% 23 0 0% 5 0 0% 0 0 0% 3 0 0%
Zea mays X00794 292 139 48% 37 0 0% 0 0 0% 22 0 0% 25 0 0% 50 0 0%
Eukaryotic Nuclear   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U07413 342 124 36% 57 0 0% 25 0 0% 16 0 0% 15 0 0% 35 0 0%
Agmasoma penaei NPA 221 118 53% 24 21 88% 16 9 56% 19 6 32% 0 0 0% 0 0 0%
Ahnfeltia plicata Z14139 338 151 45% 33 5 15% 18 0 0% 15 0 0% 28 0 0% 12 0 0%
Alexandrium fundyense U09048 291 83 29% 28 0 0% 19 0 0% 14 0 0% 28 0 0% 13 0 0%
Amblyospora sp. U68474 277 97 35% 30 0 0% 34 0 0% 15 0 0% 17 0 0% 3 0 0%
Ameson michaelis L15741 251 50 20% 25 0 0% 23 0 0% 18 0 0% 8 0 0% 3 0 0%
Androctonus australis X77908 324 153 47% 30 3 10% 21 0 0% 12 6 50% 23 0 0% 13 0 0%
Antonospora scoticae AF024655 265 77 29% 33 5 15% 23 0 0% 18 0 0% 22 0 0% 3 0 0%
Artemia salina X01723 323 118 37% 31 0 0% 21 0 0% 13 0 0% 23 0 0% 12 0 0%
Audouinella dasyae L26181 341 168 49% 33 5 15% 18 0 0% 15 0 0% 28 0 0% 13 0 0%
Audouinella hermannii AF026040 342 182 53% 32 4 13% 17 0 0% 16 0 0% 28 0 0% 13 10 77%
Aulacoseira ambigua X85404 341 92 27% 30 3 10% 21 0 0% 13 0 0% 22 0 0% 14 0 0%
Babesia bigemina X59604 295 123 42% 33 2 6% 25 0 0% 10 0 0% 21 0 0% 13 0 0%
Bacillidium sp. AF104087 261 107 41% 32 4 13% 21 0 0% 15 0 0% 22 0 0% 3 0 0%
Balamuthia mandrillaris AF019071 326 142 44% 25 7 28% 25 0 0% 23 0 0% 11 0 0% 32 0 0%
Balbiania investiens AF132294 326 166 51% 32 4 13% 18 0 0% 15 0 0% 28 0 0% 8 0 0%
Bangia sp. (Northwest Territories/NWT) AF043355 341 133 39% 33 8 24% 19 0 0% 14 0 0% 26 0 0% 15 0 0%
Bangiopsis subsimplex AF168627 335 175 52% 34 5 15% 18 0 0% 14 6 43% 28 0 0% 13 0 0%
Batrachospermum gelatinosum AF026045 339 188 55% 31 3 10% 18 0 0% 15 0 0% 28 0 0% 13 10 77%
Batrachospermum macrosporum AF026048 337 130 39% 31 0 0% 17 0 0% 16 0 0% 28 0 0% 13 0 0%
Bonnemaisonia hamifera L26182 337 164 49% 31 4 13% 16 0 0% 18 0 0% 27 0 0% 13 10 77%
Bostrychia moritziana AF203893 341 138 40% 32 7 22% 14 0 0% 18 0 0% 29 0 0% 13 0 0%
Candida albicans M60302 345 192 56% 32 3 9% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Ceramium rubrum L26183 342 151 44% 31 3 10% 17 0 0% 15 0 0% 29 0 0% 13 0 0%
Chlorella luteoviridis X73998 336 161 48% 33 0 0% 18 0 0% 13 0 0% 22 0 0% 13 0 0%
Chondrus crispus Z14140 342 187 55% 32 4 13% 16 0 0% 16 0 0% 29 0 0% 13 0 0%
Compsopogon coeruleus AF087124 324 132 41% 32 5 16% 19 0 0% 14 0 0% 28 0 0% 13 0 0%
Corallina officinalis L26184 349 136 39% 32 0 0% 16 0 0% 16 0 0% 29 0 0% 13 0 0%
Crossodonthina koreana Z36893 322 134 42% 32 4 13% 20 0 0% 13 0 0% 23 0 0% 11 0 0%
Cryptocercus punctulatus NPA 333 133 40% 32 4 13% 19 0 0% 11 0 0% 20 0 0% 23 0 0%
Cryptococcus neoformans var. neoformans L05428 348 203 58% 33 2 6% 18 0 0% 13 0 0% 23 0 0% 13 0 0%
Culicosporella lunata AF027683 284 146 51% 29 0 0% 29 0 0% 17 0 0% 15 0 0% 3 0 0%
Cyanophora paradoxa X68483 346 164 47% 33 0 0% 19 0 0% 13 0 0% 22 0 0% 13 0 0%
Cymatosira belgica X85387 338 149 44% 23 0 0% 18 0 0% 12 0 0% 15 0 0% 35 0 0%
Cyrtohymena citrina AF164135 340 155 46% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Dixonielloa grisea L26187 337 133 39% 33 7 21% 17 0 0% 15 0 0% 28 0 0% 11 0 0%
Drosophila melanogaster M21017 329 155 47% 37 0 0% 20 0 0% 21 0 0% 13 0 0% 38 7 18%
Echinococcus granulosus U27015 286 94 33% 26 0 0% 24 0 0% 19 0 0% 19 0 0% 43 0 0%
Edhazardia aedis AF027684 285 110 39% 59 24 41% 33 12 36% 29 0 0% 4 0 0% 3 0 0%
Encephalitozoon cuniculi X98467 271 59 22% 25 0 0% 20 0 0% 28 0 0% 8 0 0% 3 0 0%
Encephalitozoon hellem AF118143 268 59 22% 26 0 0% 22 0 0% 27 0 0% 10 0 0% 3 0 0%
Encephalitozoon sp. L16867 261 56 21% 26 0 0% 23 0 0% 26 0 0% 10 0 0% 3 0 0%
Endoreticulatus schubergi L39109 261 91 35% 24 0 0% 30 0 0% 28 0 0% 0 0 0% 3 0 0%
Engelmanniella mobilis AF164134 340 168 49% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Enterocytozoonidae gen. sp. AF201911 250 122 49% 27 21 78% 29 0 0% 22 5 23% 5 0 0% 0 0 0%
Erythrotrichia carnea L26189 349 172 49% 34 0 0% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Euglypha rotunda X77692 343 193 56% 29 3 10% 21 0 0% 13 0 0% 22 0 0% 13 0 0%
Euplotes aediculatus M14590 331 110 33% 28 1 4% 18 0 0% 12 0 0% 21 0 0% 23 0 0%
Flabelliforma montana AJ252962 213 67 31% 22 0 0% 11 4 36% 11 0 0% 10 0 0% 3 0 0%
Fragaria x ananassa X15590 338 117 35% 33 6 18% 19 0 0% 14 0 0% 27 0 0% 13 0 0%
Gastrostyla steinei AF164133 339 145 43% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Gelidium vagum L26190 339 168 50% 32 4 13% 16 0 0% 17 0 0% 28 0 0% 13 0 0%
Genicularia spirotaenia X74753 339 160 47% 34 5 15% 19 0 0% 13 0 0% 22 0 0% 13 0 0%
Giardia ardeae Z17210 261 101 39% 29 0 0% 23 0 0% 15 0 0% 22 0 0% 2 0 0%
Giardia intestinalis X52949 259 53 20% 23 0 0% 30 0 0% 18 0 0% 23 12 52% 2 0 0%
Giardia muris X65063 256 94 37% 31 0 0% 20 0 0% 14 0 0% 21 0 0% 2 0 0%
Glaucocystis nostochinearum X70803 345 151 44% 31 0 0% 21 0 0% 13 0 0% 22 0 0% 13 0 0%
Gloeochaete wittrockiana X81901 344 166 48% 34 5 15% 18 0 0% 13 0 0% 22 0 0% 13 0 0%
Glomus intraradices X58725 318 174 55% 23 0 0% 20 0 0% 13 0 0% 20 0 0% 0 0 0%
Glugea atherinae U15987 252 133 53% 32 0 0% 20 0 0% 26 0 0% 12 0 0% 3 0 0%
Glugea stephani AF056015 228 121 53% 26 7 27% 13 0 0% 19 0 0% 2 0 0% 0 0 0%
Gracilariopsis sp. M33639 342 152 44% 32 4 13% 15 0 0% 17 0 0% 29 0 0% 13 0 0%
Halymenia plana U33133 341 160 47% 32 4 13% 16 0 0% 17 0 0% 28 0 0% 13 10 77%
Hexamita sp. Z17224 261 101 39% 30 0 0% 25 0 0% 18 0 0% 15 0 0% 9 0 0%
Hildenbrandia rubra L19345 345 157 46% 34 0 0% 16 0 0% 18 0 0% 27 0 0% 9 0 0%
Homo sapiens K03432 364 141 39% 22 1 5% 23 0 0% 11 0 0% 33 0 0% 13 0 0%
Ichthyosporidium sp. L39110 244 88 36% 32 4 13% 18 0 0% 28 0 0% 10 0 0% 3 0 0%
Janacekia debaisieuxi AJ252950 264 113 43% 33 0 0% 22 0 0% 17 0 0% 21 0 0% 3 0 0%
Lecanora dispersa NPA 288 85 30% 23 0 0% 12 0 0% 7 0 0% 20 0 0% 0 0 0%
Lilioceris lilii NPA 339 202 60% 22 4 18% 24 0 0% 23 0 0% 10 0 0% 28 0 0%
Loma acerinae AJ252951 258 117 45% 32 0 0% 20 0 0% 26 0 0% 12 0 0% 3 0 0%
Mastigamoeba balamuthi L23799 350 191 55% 37 20 54% 11 0 0% 15 0 0% 23 12 52% 54 0 0%
Microgemma sp. AJ252952 250 126 50% 34 3 9% 21 0 0% 22 0 0% 14 0 0% 2 0 0%
Microsporidium 57864 U90885 268 89 33% 27 1 4% 30 0 0% 23 0 0% 4 0 0% 3 0 0%
Mus musculus X00686 352 150 43% 23 0 0% 23 0 0% 10 0 0% 27 0 0% 13 0 0%
Mytilus edulis L24489 334 164 49% 29 4 14% 22 0 0% 13 0 0% 22 0 0% 13 0 0%
Naegleria gruberi Thesis, Mullican J. 290 93 32% 10 2 20% 28 0 0% 14 0 0% 18 6 33% 30 0 0%
Nemalion helminthoides L26196 342 183 54% 32 4 13% 17 0 0% 16 0 0% 27 0 0% 13 10 77%
Nemalionopsis shawii AF506272 334 188 56% 35 4 11% 10 0 0% 24 0 0% 23 0 0% 13 0 0%
Nosema algerae AF069063 297 105 35% 29 0 0% 25 0 0% 18 0 0% 22 0 0% 3 0 0%
Nosema apis U97150 259 104 40% 25 2 8% 32 0 0% 18 0 0% 7 0 0% 3 0 0%
Nosema necatrix U11051 240 71 30% 27 0 0% 26 0 0% 21 0 0% 5 0 0% 3 0 0%
Okanagana utahensis U06478 353 174 49% 29 4 14% 18 0 0% 13 0 0% 27 0 0% 17 0 0%
Onychodromus quadricornutus X53485 338 113 33% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Ophiopholis aculeata L28056 295 92 31% 29 0 0% 18 0 0% 13 0 0% 22 0 0% 13 0 0%
Oxytricha granulifera AF164122 337 162 48% 28 0 0% 19 0 0% 13 6 46% 29 0 0% 13 0 0%
Oxytricha longa AF164125 339 171 50% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Palmaria palmata Z14142 341 183 54% 32 4 13% 17 0 0% 16 0 0% 28 0 0% 13 0 0%
Paraurostyla weissei AF164127 339 154 45% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Paruroleptus lepisma AF164132 338 116 34% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Paulinella chromatophora X81811 344 168 49% 29 3 10% 21 0 0% 13 0 0% 22 0 0% 14 0 0%
Placopecten magellanicus X53899 329 126 38% 31 0 0% 20 0 0% 13 0 0% 22 0 0% 13 0 0%
Plasmodium falciparum (A gene) M19172 359 209 58% 49 22 45% 15 0 0% 25 0 0% 17 0 0% 38 6 16%
Plasmodium falciparum (S gene) M19173 344 129 38% 54 6 11% 11 0 0% 25 0 0% 23 0 0% 35 0 0%
Plasmodium vivax (A gene) U07367 346 189 55% 47 18 38% 18 0 0% 22 0 0% 17 0 0% 38 6 16%
Plasmodium vivax (O gene) U93095 331 129 39% 66 47 71% 24 10 42% 17 0 0% 30 7 23% 37 0 0%
Plasmodium vivax (S gene) U07368 349 162 46% 49 23 47% 25 0 0% 20 0 0% 27 0 0% 39 0 0%
Pleistophora hippoglossoideos AJ252953 264 102 39% 36 10 28% 20 0 0% 25 0 0% 13 0 0% 3 0 0%
Pleistophora sp. U10342 244 102 42% 24 7 29% 30 0 0% 28 0 0% 0 0 0% 3 0 0%
Pleurotricha lanceolota AF164128 338 137 41% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Plocamiocolax pulvinata U09618 347 156 45% 32 4 13% 17 0 0% 15 0 0% 29 0 0% 13 10 77%
Polydispyrenia simulii AJ252960 238 84 35% 25 0 0% 27 0 0% 20 0 0% 20 0 0% 3 0 0%
Porphyra miniata AF175540 338 95 28% 31 0 0% 20 0 0% 14 0 0% 25 0 0% 16 0 0%
Porphyridium aerugineum L27635 338 156 46% 30 3 10% 18 0 0% 14 0 0% 29 0 0% 13 0 0%
Reticulitermes flavipes NPA 347 169 49% 28 4 14% 18 0 0% 15 0 0% 23 0 0% 16 0 0%
Rhodella maculata U21217 332 150 45% 31 5 16% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Rhodochaete parvula AF139462 340 175 51% 34 5 15% 18 0 0% 14 0 0% 27 0 0% 3 0 0%
Rhodogorgon carriebowensis AF006089 360 177 49% 33 4 12% 12 0 0% 20 0 0% 22 0 0% 20 10 50%
Rhodymenia leptophylla U09621 343 158 46% 32 4 13% 16 0 0% 17 0 0% 28 0 0% 13 0 0%
Saccharomyces cerevisiae U53879 347 186 54% 31 0 0% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Spraguea lophii AF033197 248 93 38% 35 1 3% 21 0 0% 23 0 0% 15 0 0% 3 0 0%
Staurastrum sp. M752 X74752 334 135 40% 34 6 18% 19 0 0% 13 0 0% 22 0 0% 13 0 0%
Strongylocentrotus purpuratus L28055 296 124 42% 31 0 0% 15 0 0% 13 0 0% 22 0 0% 13 0 0%
Stylonychia lemnae AF164124 340 148 44% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Stylonychia mytilus AF164123 339 124 37% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Thalassiosira eccentrica X85396 342 153 45% 31 3 10% 19 0 0% 13 0 0% 22 0 0% 12 0 0%
Thelohania solenopsae AF031538 287 86 30% 27 7 26% 27 0 0% 18 0 0% 22 0 0% 3 0 0%
Thelohania sp. AF031537 207 47 23% 31 0 0% 15 0 0% 3 0 0% 0 0 0% 0 0 0%
Thorea hispida AF506273 334 185 55% 34 16 47% 3 0 0% 29 0 0% 15 0 0% 22 0 0%
Thorea violacea AF026042 367 172 47% 40 8 20% 20 0 0% 19 0 0% 16 0 0% 36 0 0%
Thorea violacea AF506274 333 192 58% 35 17 49% 3 0 0% 29 0 0% 15 0 0% 22 0 0%
Toxoplasma gondii (P) X75453 310 153 49% 28 1 4% 19 0 0% 15 0 0% 27 0 0% 13 0 0%
Trachipleistophora hominis AJ002605 259 128 49% 35 0 0% 20 0 0% 24 0 0% 14 10 71% 3 0 0%
Tritrichomonas foetus M81842 297 149 50% 30 14 47% 25 0 0% 16 0 0% 25 0 0% 4 0 0%
Uroleptus gallina AF164130 339 173 51% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Uroleptus pisces AF164131 339 149 44% 28 2 7% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Urostyla grandis AF164129 335 132 39% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Vairimorpha necatrix Y00266 M24612 252 69 27% 27 0 0% 31 0 0% 20 0 0% 5 0 0% 3 0 0%
Vairimorpha sp. Argentina AF031539 228 85 37% 27 0 0% 27 0 0% 9 0 0% 12 0 0% 0 0 0%
Vavraia culicis AJ252961 258 95 37% 34 12 35% 21 0 0% 25 0 0% 13 0 0% 3 0 0%
Visvesvaria acridophagus AF024658 302 155 51% 29 0 0% 26 0 0% 18 0 0% 21 0 0% 3 0 0%
Weiseria palustris AF132544 275 112 41% 25 0 0% 27 0 0% 19 0 0% 20 0 0% 3 0 0%
Xenopus laevis X04025 332 147 44% 27 4 15% 21 0 0% 15 0 0% 22 0 0% 12 0 0%
  1. C, Number of comparative, canonical base-pairs (G-C,C-G,A-U,U-A,G-U,U-G); P, Number of base-pairs predicted in the MFold 3.1 optimal structure prediction that match comparative, canonical base-pairs; A, Accuracy of base-pair predictions in the MFold 3.1 optimal structure prediction, accuracy is calculated by dividing the number of correctly predicted Mfold base pairs by the number of canoncial, comparative base pairs within the RNA Contact Distance category.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.