Archaea   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Archaeoglobus fulgidus M64487 628 454 72% 93 46 49% 19 5 26% 32 9 28% 12 8 67% 33 14 42%
Desulfurococcus mobilis X05480 655 409 62% 106 73 69% 13 6 46% 25 0 0% 10 0 0% 65 18 28%
Haloarcula marismortui X13738 610 339 56% 101 34 34% 20 7 35% 31 6 19% 11 0 0% 43 0 0%
Haloarcula marismortui rrnA AF034619 607 367 60% 103 42 41% 20 7 35% 32 6 19% 11 9 82% 43 14 33%
Haloarcula marismortui rrnB AF034620 608 379 62% 104 43 41% 20 11 55% 32 19 59% 11 0 0% 43 0 0%
Halobacterium salinarum X03407 604 386 64% 97 55 57% 17 0 0% 32 9 28% 12 0 0% 32 5 16%
Halococcus morrhuae X05481 606 385 64% 96 63 66% 21 9 43% 31 4 13% 12 0 0% 32 0 0%
Haloferax volcanii Thesis, Achenbach-Richter L. 595 372 63% 94 46 49% 17 0 0% 31 9 29% 12 0 0% 29 3 10%
Methanococcus jannaschii U67517 L77117 656 473 72% 113 77 68% 12 5 42% 42 8 19% 13 11 85% 43 24 56%
Methanococcus vannielii X02729 623 394 63% 107 67 63% 9 5 56% 40 16 40% 14 0 0% 30 12 40%
Methanospirillum hungatei M81323 601 286 48% 96 23 24% 17 5 29% 31 0 0% 12 0 0% 28 0 0%
Methanothermobacter thermautotrophicus X05482 636 290 46% 109 37 34% 21 4 19% 34 0 0% 12 0 0% 30 10 33%
Sulfolobus acidocaldarius M67495 649 362 56% 115 67 58% 14 0 0% 38 0 0% 12 0 0% 33 12 36%
Thermococcus celer M67497 649 434 67% 105 67 64% 17 0 0% 38 15 39% 13 11 85% 38 29 76%
Thermofilum pendens X14835 663 415 63% 110 64 58% 13 0 0% 40 8 20% 12 9 75% 29 10 34%
Thermoplasma acidophilum M32298 604 397 66% 99 70 71% 17 7 41% 33 10 30% 12 0 0% 33 4 12%
Thermoproteus tenax PUBMED 661 430 65% 107 81 76% 14 2 14% 40 0 0% 12 0 0% 33 11 33%
Bacteria   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acinetobacter calcoaceticus X87280 614 303 49% 94 14 15% 14 0 0% 49 7 14% 13 12 92% 36 10 28%
Aeromonas hydrophila X87281 610 351 58% 96 17 18% 14 6 43% 49 17 35% 13 12 92% 36 9 25%
Aquifex aeolicus AE000709 AE000751 637 398 62% 97 56 58% 19 0 0% 40 0 0% 11 0 0% 47 8 17%
Bacillus anthracis X64645 606 317 52% 99 26 26% 18 12 67% 39 14 36% 12 9 75% 34 10 29%
Bacillus sp. X60981 602 342 57% 93 29 31% 17 9 53% 40 15 38% 13 9 69% 38 18 47%
Bacillus subtilis K00637 AF008220 Z99119 617 360 58% 100 33 33% 18 7 39% 41 14 34% 13 9 69% 46 18 39%
Bartonella bacilliformis L39095 625 405 65% 73 9 12% 15 0 0% 31 11 35% 13 0 0% 45 0 0%
Bordetella bronchiseptica X70371 600 294 49% 95 17 18% 12 6 50% 47 14 30% 14 0 0% 36 0 0%
Bordetella pertussis X68323 592 293 49% 96 7 7% 12 6 50% 47 17 36% 14 13 93% 36 2 6%
Borrelia burgdorferi M88330 625 297 48% 99 16 16% 22 0 0% 38 0 0% 10 0 0% 48 8 17%
Bradyrhizobium japonicum Z35330 610 415 68% 79 38 48% 15 0 0% 32 0 0% 4 0 0% 47 8 17%
Bradyrhizobium japonicum X71840 615 423 69% 80 33 41% 15 4 27% 31 8 26% 4 0 0% 47 8 17%
Burkholderia cepacia X16368 609 372 61% 97 22 23% 12 6 50% 47 5 11% 13 12 92% 39 12 31%
Burkholderia mallei Y17183 612 355 58% 98 25 26% 12 6 50% 47 5 11% 13 12 92% 39 12 31%
Burkholderia pseudomallei Y17184 612 350 57% 98 25 26% 12 6 50% 47 5 11% 13 12 92% 39 12 31%
Campylobacter coli U09611 615 377 61% 119 47 39% 13 0 0% 34 9 26% 13 0 0% 43 22 51%
Campylobacter jejuni Z29326 612 337 55% 95 33 35% 13 1 8% 42 9 21% 13 0 0% 45 16 36%
Chlamydia suis U68420 599 313 52% 90 21 23% 12 9 75% 41 17 41% 13 0 0% 38 8 21%
Chlamydia trachomatis U68443 614 288 47% 91 12 13% 15 9 60% 40 0 0% 13 0 0% 46 12 26%
Chlamydophila pneumoniae U76711 AE001668 598 332 56% 89 15 17% 12 9 75% 41 11 27% 13 0 0% 38 8 21%
Chlamydophila psittaci U68447 623 300 48% 96 32 33% 14 9 64% 39 0 0% 13 0 0% 46 8 17%
Chlorobium limicola M62805 553 352 64% 75 34 45% 15 0 0% 38 17 45% 13 9 69% 28 8 29%
Citrobacter freundii U77928 613 298 49% 96 16 17% 14 0 0% 46 11 24% 13 0 0% 39 16 41%
Clostridium botulinum A X65602 598 351 59% 96 34 35% 17 8 47% 38 17 45% 13 9 69% 46 8 17%
Clostridium botulinum B M94178 614 390 64% 98 27 28% 17 9 53% 38 0 0% 13 11 85% 46 18 39%
Clostridium botulinum B M94259 611 372 61% 98 19 19% 17 9 53% 38 0 0% 13 0 0% 46 8 17%
Clostridium botulinum E M94261 609 371 61% 97 15 15% 17 9 53% 37 0 0% 13 0 0% 46 8 17%
Coxiella burnetii X79704 555 227 41% 73 12 16% 56 20 36% 36 10 28% 12 0 0% 41 0 0%
Deinococcus radiodurans AE002087 601 282 47% 96 17 18% 18 11 61% 36 11 31% 13 0 0% 45 14 31%
Deinococcus radiodurans AE001886 602 351 58% 96 11 11% 18 11 61% 36 7 19% 13 0 0% 45 8 18%
Enterococcus faecalis X79341 613 403 66% 99 23 23% 15 9 60% 40 9 23% 13 0 0% 44 17 39%
Erysipelothrix rhusiopathiae AB019250 602 338 56% 101 23 23% 18 0 0% 38 8 21% 13 0 0% 45 0 0%
Escherichia coli J01695 620 409 66% 97 30 31% 14 0 0% 46 11 24% 13 0 0% 40 8 20%
Flexibacter flexilis M62806 563 232 41% 88 0 0% 13 0 0% 35 0 0% 13 9 69% 29 6 21%
Frankia sp. M55343 674 373 55% 84 19 23% 23 9 39% 34 18 53% 21 9 43% 39 21 54%
Geobacillus stearothermophilus K02663 615 389 63% 94 28 30% 17 9 53% 40 21 53% 13 9 69% 38 18 47%
Haemophilus influenzae (operons A-F) U32742 U32745 U32755 U32847 U32697 U32707 612 321 52% 96 10 10% 14 0 0% 45 3 7% 13 12 92% 40 12 30%
Helicobacter pylori U27270 591 309 52% 89 10 11% 12 0 0% 42 10 24% 14 0 0% 37 8 22%
Heliobacterium chlorum NPA2 624 366 59% 95 32 34% 16 0 0% 29 0 0% 18 0 0% 37 8 22%
Klebsiella pneumoniae X87284 619 393 63% 97 36 37% 14 0 0% 46 4 9% 13 12 92% 39 12 31%
Lactobacillus delbrueckii X68426 612 395 65% 97 27 28% 15 0 0% 41 0 0% 12 8 67% 46 8 17%
Lactococcus lactis X68434 616 291 47% 98 14 14% 16 0 0% 40 0 0% 13 0 0% 45 7 16%
Leptospira interrogans X14249 616 329 53% 98 17 17% 18 0 0% 40 0 0% 11 0 0% 48 8 17%
Listeria monocytogenes X64533 611 321 53% 99 25 25% 18 0 0% 40 9 23% 13 0 0% 46 19 41%
Listeria monocytogenes X68420 623 390 63% 99 17 17% 18 7 39% 39 0 0% 13 9 69% 46 18 39%
Micrococcus luteus X06484 649 340 52% 88 6 7% 22 0 0% 36 0 0% 20 0 0% 39 7 18%
Mycobacterium leprae X56657 656 392 60% 87 23 26% 24 19 79% 37 22 59% 19 8 42% 39 6 15%
Mycobacterium tuberculosis Z73902 664 261 39% 86 7 8% 24 0 0% 38 0 0% 19 0 0% 40 8 20%
Mycoplasma genitalium U39694 621 301 48% 99 21 21% 14 0 0% 42 0 0% 12 0 0% 44 8 18%
Mycoplasma pneumoniae X68422 U00089 616 358 58% 101 19 19% 16 7 44% 40 10 25% 13 0 0% 43 8 19%
Myroides odoratus M62807 534 181 34% 77 27 35% 17 0 0% 33 0 0% 13 0 0% 27 0 0%
Neisseria gonorrhoeae X67293 610 315 52% 99 26 26% 12 6 50% 45 13 29% 13 0 0% 40 8 20%
Neisseria meningitidis X67300 611 305 50% 99 6 6% 12 6 50% 45 20 44% 13 0 0% 40 8 20%
Parachlamydia acanthamoebae Y07555 610 343 56% 88 13 15% 13 9 69% 40 0 0% 13 11 85% 38 8 21%
Pirellula marina X07408 587 350 60% 95 56 59% 16 0 0% 38 6 16% 14 0 0% 40 17 43%
Plesiomonas shigelloides X65487 575 266 46% 82 10 12% 14 0 0% 47 11 23% 11 0 0% 33 0 0%
Pseudomonas aeruginosa Y00432 614 319 52% 96 23 24% 15 6 40% 50 33 66% 13 12 92% 36 9 25%
Rhodobacter capsulatus X06485 617 358 58% 72 22 31% 14 0 0% 32 0 0% 11 0 0% 40 8 20%
Rhodobacter sphaeroides X53853 620 394 64% 72 35 49% 15 0 0% 31 11 35% 13 0 0% 37 7 19%
Rhodococcus erythropolis AF001265 668 386 58% 82 38 46% 24 13 54% 30 11 37% 25 0 0% 39 0 0%
Rhodopseudomonas palustris X71839 612 398 65% 67 26 39% 15 0 0% 31 11 35% 13 0 0% 38 8 21%
Rickettsia prowazekii AJ235270 606 369 61% 75 20 27% 15 4 27% 42 30 71% 13 10 77% 37 10 27%
Rickettsia rickettsii U11022 596 382 64% 72 20 28% 15 4 27% 32 22 69% 0 0 0% 27 0 0%
Ruminobacter amylophilus X06765 596 281 47% 95 26 27% 15 0 0% 51 0 0% 13 0 0% 35 8 23%
Simkania negevensis U68460 604 319 53% 88 3 3% 12 0 0% 41 0 0% 13 2 15% 38 18 47%
Staphylococcus aureus X68425 622 362 58% 97 20 21% 16 0 0% 42 9 21% 13 0 0% 46 8 17%
Staphylococcus carnosus X68419 624 347 56% 96 23 24% 16 0 0% 42 9 21% 13 0 0% 46 16 35%
Streptomyces ambofaciens M27245 664 394 59% 82 29 35% 25 19 76% 38 21 55% 19 0 0% 39 16 41%
Streptomyces griseus X61478 665 340 51% 85 16 19% 23 13 57% 36 0 0% 19 0 0% 39 0 0%
Synechococcus sp. PCC 6301 X00512 597 313 52% 90 12 13% 14 0 0% 39 0 0% 13 0 0% 36 8 22%
Thermotoga maritima M67498 648 434 67% 104 64 62% 21 6 29% 42 9 21% 11 0 0% 48 8 17%
Thermus aquaticus NPA 625 395 63% 93 26 28% 12 0 0% 40 0 0% 12 0 0% 38 14 37%
Thermus thermophilus X12612 607 403 66% 94 30 32% 14 5 36% 40 0 0% 12 0 0% 38 14 37%
Treponema pallidum (rRNA A) AE001204 623 207 33% 98 0 0% 18 0 0% 42 0 0% 13 0 0% 46 8 17%
Tropheryma whipplei AF190687 629 302 48% 84 32 38% 22 0 0% 35 0 0% 19 0 0% 39 7 18%
Eukaryotic Chloroplast   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Alnus incana M75719 M75722 576 334 58% 94 20 21% 17 0 0% 40 0 0% 13 0 0% 32 0 0%
Astasia longa X14386 596 148 25% 83 10 12% 19 9 47% 56 6 11% 19 0 0% 53 9 17%
Chlamydomonas eugametos Z17234 608 216 36% 96 4 4% 27 4 15% 38 0 0% 0 0 0% 52 0 0%
Chlamydomonas frankii L43352 X68905 X68906 X68907 X68908 X68909 Z17230 577 211 37% 94 12 13% 13 0 0% 41 6 15% 13 13 100% 32 9 28%
Chlamydomonas geitleri L43353 X68891 X68892 Z15153 590 272 46% 96 6 6% 13 0 0% 40 0 0% 13 0 0% 33 0 0%
Chlamydomonas gelatinosa Z15151 580 289 50% 92 26 28% 17 0 0% 40 0 0% 13 0 0% 33 0 0%
Chlamydomonas humicola L42989 X68921 X68922 Z17235 578 262 45% 93 4 4% 17 0 0% 39 0 0% 13 0 0% 33 2 6%
Chlamydomonas indica X68893 X68894 X68895 X68896 X68897 X68898 Z17228 606 219 36% 99 8 8% 27 0 0% 34 0 0% 11 0 0% 41 0 0%
Chlamydomonas iyengarii L43354 X68885 X68886 Z15148 578 293 51% 94 26 28% 17 0 0% 40 0 0% 9 9 100% 37 2 5%
Chlamydomonas komma L43502 X68927 X68928 X68929 Z17237 582 283 49% 94 30 32% 14 2 14% 40 0 0% 13 0 0% 32 11 34%
Chlamydomonas mexicana L49148 X68910 X68911 X68912 Z17231 586 289 49% 93 4 4% 18 0 0% 36 0 0% 16 0 0% 33 2 6%
Chlamydomonas pallidostigmatica L43503 X68899 X68900 X68901 X68902 X68903 X68904 Z17229 601 362 60% 109 18 17% 17 9 53% 38 0 0% 0 0 0% 51 3 6%
Chlamydomonas peterfii L43538 X68887 X68888 Z15149 581 283 49% 88 25 28% 23 6 26% 40 0 0% 11 0 0% 36 0 0%
Chlamydomonas pitschmannii Z15152 588 288 49% 83 45 54% 25 4 16% 40 4 10% 4 0 0% 42 2 5%
Chlamydomonas reinhardtii X15727 X16686 X16687 596 295 49% 100 12 12% 15 0 0% 40 0 0% 13 0 0% 41 10 24%
Chlamydomonas sp. SAG 66.72 L43539 X68923 X68924 X68925 X68926 Z17236 608 299 49% 94 21 22% 17 4 24% 38 0 0% 6 0 0% 46 8 17%
Chlamydomonas starrii L43504 X68889 X68890 Z15150 580 275 47% 90 34 38% 13 0 0% 44 0 0% 4 0 0% 46 2 4%
Chlamydomonas zebra L43356 Z17233 578 302 52% 93 10 11% 17 0 0% 40 0 0% 11 9 82% 35 0 0%
Chlorella ellipsoidea M36158 578 313 54% 74 17 23% 34 0 0% 34 0 0% 17 0 0% 35 0 0%
Conopholis americana X59768 X58863 555 160 29% 85 0 0% 24 0 0% 38 0 0% 12 0 0% 32 13 41%
Epifagus virginiana X62099 566 190 34% 89 10 11% 17 9 53% 41 13 32% 12 0 0% 32 0 0%
Euglena gracilis X12890 X13310 595 266 45% 103 13 13% 19 0 0% 37 8 22% 14 0 0% 37 0 0%
Marchantia polymorpha X04465 576 276 48% 92 32 35% 19 0 0% 41 0 0% 12 0 0% 34 6 18%
Nicotiana tabacum Z00044 583 267 46% 97 24 25% 17 0 0% 40 0 0% 13 0 0% 32 0 0%
Odontella sinensis Z67753 583 257 44% 92 8 9% 14 9 64% 39 13 33% 13 0 0% 36 0 0%
Oryza sativa X15901 599 195 33% 73 7 10% 32 0 0% 37 1 3% 20 7 35% 33 6 18%
Palmaria palmata Z18289 587 300 51% 90 19 21% 17 3 18% 37 11 30% 13 0 0% 35 5 14%
Pisum sativum X55033 M37430 579 231 40% 88 0 0% 24 0 0% 40 0 0% 13 0 0% 32 5 16%
Plasmodium falciparum (plastid-like) X61660 X95275 566 133 23% 71 2 3% 21 4 19% 41 10 24% 10 0 0% 34 8 24%
Toxoplasma gondii (plastid-like) U18086 533 243 46% 65 42 65% 22 8 36% 41 0 0% 7 4 57% 25 6 24%
Zea mays Z00028 605 266 44% 78 23 29% 31 9 29% 39 1 3% 20 7 35% 41 0 0%
Eukaryotic Mitochondrion   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U03732 544 207 38% 68 8 12% 14 4 29% 44 6 14% 12 0 0% 39 0 0%
Aedes albopictus X01078 248 68 27% 31 0 0% 12 0 0% 15 0 0% 1 0 0% 0 0 0%
Albinaria caerulea X83390 185 68 37% 39 17 44% 11 0 0% 7 6 86% 0 0 0% 0 0 0%
Albinaria turrita X71393 X71394 185 31 17% 37 8 22% 11 0 0% 6 0 0% 0 0 0% 0 0 0%
Allomyces macrogynus U41288 543 254 47% 73 28 38% 14 0 0% 29 0 0% 26 0 0% 50 13 26%
Antilocapra americana M55540 261 114 44% 44 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Apis mellifera L06178 236 64 27% 35 4 11% 11 0 0% 12 0 0% 4 0 0% 0 0 0%
Artemia salina X12965 207 38 18% 32 0 0% 2 0 0% 16 0 0% 0 0 0% 1 0 0%
Ascaris suum X54253 166 25 15% 10 7 70% 14 0 0% 4 0 0% 0 0 0% 0 0 0%
Aspergillus nidulans J01390 X06961 478 236 49% 81 58 72% 44 0 0% 23 0 0% 6 0 0% 38 15 39%
Balaenoptera musculus X72204 256 108 42% 46 4 9% 14 0 0% 8 0 0% 5 0 0% 0 0 0%
Bos taurus J01394 258 66 26% 45 4 9% 15 0 0% 8 0 0% 6 0 0% 0 0 0%
Cacozeliana lacertina AF101007 241 92 38% 35 0 0% 12 0 0% 10 0 0% 6 0 0% 1 0 0%
Caenorhabditis elegans X54252 172 48 28% 11 4 36% 14 0 0% 4 0 0% 0 0 0% 0 0 0%
Cafeteria roenbergensis AF193903 525 270 51% 68 27 40% 16 7 44% 41 12 29% 9 0 0% 26 8 31%
Capra hircus M55541 235 120 51% 34 8 24% 16 0 0% 7 0 0% 6 0 0% 0 0 0%
Cepaea nemoralis U23045 174 42 24% 24 9 38% 11 0 0% 5 0 0% 0 0 0% 0 0 0%
Cervus unicolor M35875 232 103 44% 35 0 0% 16 0 0% 7 0 0% 6 0 0% 0 0 0%
Chlamydomonas eugametos AF008237 349 123 35% 59 12 20% 15 0 0% 16 0 0% 0 0 0% 19 10 53%
Chlamydomonas reinhardtii X54860 U03843 336 150 45% 39 4 10% 14 11 79% 30 10 33% 0 0 0% 19 8 42%
Chondrus crispus Z46224 Z47547 498 223 45% 67 23 34% 22 0 0% 38 11 29% 9 0 0% 27 18 67%
Crithidia fasciculata X02548 108 2 2% 24 0 0% 12 0 0% 0 0 0% 0 0 0% 0 0 0%
Crithidia oncopelti X51736 103 0 0% 19 0 0% 11 0 0% 0 0 0% 0 0 0% 0 0 0%
Crossostoma lacustre M91245 253 121 48% 41 3 7% 24 0 0% 0 0 0% 14 0 0% 0 0 0%
Damaliscus pygargus M86499 261 131 50% 45 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Dictyostelium discoideum D16466 494 165 33% 87 20 23% 17 0 0% 31 0 0% 19 0 0% 25 0 0%
Didelphis virginiana Z29573 263 102 39% 44 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Drosophila melanogaster X53506 244 64 26% 29 0 0% 13 0 0% 16 0 0% 0 0 0% 1 0 0%
Drosophila yakuba X03240 227 60 26% 30 0 0% 12 0 0% 13 0 0% 0 0 0% 0 0 0%
Equus caballus X79547 266 115 43% 42 1 2% 18 6 33% 7 0 0% 6 0 0% 0 0 0%
Euhadra herklotsi Z71693 177 43 24% 30 8 27% 12 0 0% 5 0 0% 0 0 0% 0 0 0%
Gallus gallus X52392 250 67 27% 33 12 36% 24 7 29% 3 0 0% 11 0 0% 0 0 0%
Homo sapiens D38112 251 103 41% 41 4 10% 16 0 0% 7 0 0% 6 0 0% 0 0 0%
Hydropotes inermis M35876 233 135 58% 36 5 14% 15 0 0% 7 0 0% 6 0 0% 0 0 0%
Katharina tunicata U09810 220 38 17% 29 3 10% 15 3 20% 16 0 0% 0 0 0% 1 0 0%
Leishmania tarentolae X02354 110 7 6% 21 0 0% 11 0 0% 0 0 0% 0 0 0% 0 0 0%
Leptomonas sp. J03814 103 0 0% 20 0 0% 11 0 0% 0 0 0% 0 0 0% 0 0 0%
Locusta migratoria X80245 226 54 24% 34 7 21% 10 0 0% 16 0 0% 0 0 0% 0 0 0%
Loligo bleekeri AB009838 236 45 19% 29 5 17% 8 3 38% 16 0 0% 0 0 0% 0 0 0%
Lumbricus terrestris U24570 204 83 41% 37 17 46% 0 0 0% 13 0 0% 0 0 0% 0 0 0%
Marchantia polymorpha M68929 547 255 47% 65 13 20% 20 0 0% 32 0 0% 13 0 0% 28 0 0%
Meloidogyne javanica L76261 120 6 5% 5 0 0% 14 0 0% 0 0 0% 0 0 0% 0 0 0%
Muntiacus reevesi M35877 282 60 21% 54 7 13% 16 0 0% 10 0 0% 6 0 0% 1 0 0%
Mus musculus J01420 264 95 36% 39 0 0% 18 0 0% 7 0 0% 7 0 0% 0 0 0%
Mytilus edulis M83756 227 53 23% 32 0 0% 12 0 0% 16 0 0% 0 0 0% 1 0 0%
Neurospora crassa X55443 450 231 51% 96 23 24% 44 13 30% 17 0 0% 27 16 59% 44 14 32%
Ochromonas danica AF287134 531 239 45% 67 8 12% 12 8 67% 46 22 48% 10 10 100% 26 0 0%
Odocoileus virginianus M35874 239 98 41% 36 0 0% 15 0 0% 7 0 0% 6 0 0% 0 0 0%
Oenothera berteriana X02559 508 189 37% 57 17 30% 9 9 100% 43 11 26% 4 0 0% 47 0 0%
Pan troglodytes D38113 247 93 38% 41 4 10% 15 0 0% 8 0 0% 6 0 0% 0 0 0%
Paracentrotus lividus J04815 256 89 35% 30 9 30% 26 0 0% 0 0 0% 14 0 0% 0 0 0%
Paracrostoma paludiformis AF101008 239 69 29% 31 0 0% 10 0 0% 9 0 0% 6 0 0% 1 0 0%
Paramecium primaurelia K00634 435 145 33% 76 18 24% 22 0 0% 35 0 0% 11 8 73% 19 0 0%
Paramecium tetraurelia K01749 477 235 49% 74 42 57% 20 8 40% 38 17 45% 8 0 0% 19 6 32%
Pecten maximus X92688 237 40 17% 25 0 0% 16 0 0% 5 0 0% 10 0 0% 1 0 0%
Penicillium chrysogenum D13859 S56867 459 182 40% 94 29 31% 30 0 0% 30 0 0% 14 4 29% 43 0 0%
Phoca vitulina X63726 257 116 45% 41 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Physarum polycephalum AF080601 480 174 36% 67 9 13% 14 4 29% 28 0 0% 26 0 0% 31 0 0%
Pichia canadensis D31785 477 202 42% 62 18 29% 77 0 0% 5 0 0% 6 0 0% 45 16 36%
Podospora anserina X14735 X55026 478 243 51% 62 2 3% 62 0 0% 28 0 0% 14 11 79% 40 0 0%
Porphyra purpurea AF114794 500 196 39% 66 13 20% 29 0 0% 42 0 0% 0 0 0% 26 0 0%
Prototheca wickerhamii X68722 551 341 62% 72 27 38% 17 11 65% 29 24 83% 6 0 0% 41 0 0%
Pylaiella littoralis Z48620 509 175 34% 71 8 11% 15 0 0% 42 0 0% 13 0 0% 18 0 0%
Pyura stolonifera X74513 160 32 20% 33 0 0% 5 0 0% 8 0 0% 0 0 0% 0 0 0%
Rana catesbeiana X12841 232 132 57% 34 4 12% 14 0 0% 6 0 0% 7 0 0% 0 0 0%
Rattus norvegicus J01438 219 50 23% 26 0 0% 17 0 0% 6 0 0% 6 0 0% 0 0 0%
Reclinomonas americana AF007261 578 270 47% 66 10 15% 15 0 0% 42 7 17% 14 13 93% 27 8 30%
Rhizopus stolonifer NPA 491 272 55% 91 36 40% 17 3 18% 40 8 20% 19 0 0% 18 0 0%
Rhodomonas salina AF288090 530 218 41% 70 6 9% 19 0 0% 41 9 22% 10 0 0% 27 0 0%
Saccharomyces cerevisiae J01527 461 116 25% 65 3 5% 59 0 0% 23 0 0% 0 0 0% 51 15 29%
Sceloporus undulatus L28075 246 73 30% 37 9 24% 11 3 27% 8 0 0% 5 0 0% 0 0 0%
Schizosaccharomyces pombe X06597 502 229 46% 83 29 35% 16 4 25% 25 0 0% 27 6 22% 27 16 59%
Strongylocentrotus purpuratus X12631 200 67 34% 15 0 0% 18 0 0% 1 0 0% 12 0 0% 0 0 0%
Suillus sinuspaulianus L47585 481 168 35% 66 11 17% 27 14 52% 32 0 0% 5 0 0% 78 0 0%
Tetrahymena pyriformis M58010 493 221 45% 75 38 51% 29 19 66% 40 20 50% 3 3 100% 27 14 52%
Tetrahymena pyriformis M58011 487 218 45% 73 34 47% 28 15 54% 39 19 49% 3 3 100% 27 14 52%
Tragulus napu M55539 240 113 47% 34 0 0% 16 10 63% 7 0 0% 6 0 0% 0 0 0%
Triticum aestivum Z11889 Z14078 509 224 44% 57 17 30% 9 9 100% 34 10 29% 0 0 0% 59 0 0%
Trypanosoma brucei X02547 106 12 11% 19 0 0% 12 0 0% 0 0 0% 0 0 0% 0 0 0%
Xenopus laevis M10217 270 114 42% 35 0 0% 23 0 0% 0 0 0% 13 0 0% 0 0 0%
Zea mays K01868 510 158 31% 58 17 29% 9 0 0% 32 11 34% 0 0 0% 68 0 0%
Eukaryotic Nuclear   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Aedes albopictus L22060 650 325 50% 137 57 42% 32 12 38% 15 0 0% 42 11 26% 48 6 13%
Arabidopsis thaliana X52320 686 326 48% 134 58 43% 30 22 73% 17 0 0% 33 11 33% 30 0 0%
Babesia bigemina NPA 587 205 35% 122 28 23% 15 4 27% 21 0 0% 32 0 0% 28 0 0%
Brassica napus D10840 689 305 44% 134 37 28% 28 11 39% 15 0 0% 31 0 0% 30 0 0%
Caenorhabditis elegans X03680 725 430 59% 137 70 51% 32 14 44% 10 0 0% 40 0 0% 28 0 0%
Candida albicans L28817 710 284 40% 146 37 25% 20 9 45% 20 0 0% 32 11 34% 29 0 0%
Chlorella ellipsoidea D17810 D13340 700 370 53% 145 93 64% 21 15 71% 15 0 0% 35 11 31% 29 0 0%
Crithidia fasciculata Y00055 623 304 49% 98 8 8% 42 11 26% 15 12 80% 15 0 0% 66 0 0%
Dictyostelium discoideum X00601 V00189 588 343 58% 111 50 45% 30 14 47% 15 12 80% 45 11 24% 19 12 63%
Didymium iridis X60210 709 308 43% 111 32 29% 36 12 33% 16 0 0% 38 8 21% 40 0 0%
Drosophila melanogaster M21017 X15707 682 337 49% 132 52 39% 40 20 50% 28 0 0% 24 0 0% 53 9 17%
Encephalitozoon cuniculi AJ005581 477 196 41% 57 18 32% 24 8 33% 26 0 0% 14 0 0% 11 6 55%
Entamoeba histolytica X65163 651 334 51% 98 43 44% 30 26 87% 17 0 0% 30 4 13% 36 0 0%
Euglena gracilis X53361 696 167 24% 139 12 9% 45 5 11% 2 0 0% 25 0 0% 53 0 0%
Filobasidiella neoformans var. bacillispora L14067 726 404 56% 139 69 50% 27 12 44% 17 0 0% 34 0 0% 29 0 0%
Fragaria x ananassa X15589 X58118 675 212 31% 133 37 28% 26 0 0% 17 0 0% 31 11 35% 29 0 0%
Giardia ardeae X58290 584 204 35% 83 29 35% 11 0 0% 42 0 0% 13 0 0% 17 0 0%
Giardia intestinalis X52949 590 203 34% 92 42 46% 12 4 33% 41 8 20% 13 0 0% 26 0 0%
Giardia muris X65063 571 236 41% 82 32 39% 14 0 0% 40 0 0% 14 0 0% 18 0 0%
Herdmania momus X53538 683 246 36% 102 36 35% 21 3 14% 27 8 30% 29 0 0% 30 0 0%
Hexamita inflata NPA 526 276 52% 114 45 39% 7 3 43% 24 4 17% 25 0 0% 27 0 0%
Homo sapiens J01866 M11167 648 236 36% 118 31 26% 64 20 31% 4 0 0% 27 0 0% 93 0 0%
Lycopersicon esculentum X13557 X52265 701 339 48% 135 36 27% 29 4 14% 13 0 0% 37 0 0% 29 0 0%
Microsporidium 57864 U90885 464 158 34% 76 19 25% 25 2 8% 37 22 59% 4 0 0% 11 0 0%
Mucor racemosus M26190 666 355 53% 130 30 23% 31 12 39% 21 6 29% 27 0 0% 16 0 0%
Mus musculus J01871 X00525 656 213 32% 126 55 44% 55 25 45% 14 0 0% 26 0 0% 85 17 20%
Naegleria gruberi Thesis, Mullican J. 661 361 55% 114 53 46% 33 22 67% 5 0 0% 48 11 23% 30 10 33%
Nosema apis U76706 461 232 50% 74 24 32% 26 6 23% 36 0 0% 5 0 0% 9 0 0%
Nosema apis U97150 467 160 34% 73 12 16% 26 7 27% 35 0 0% 5 0 0% 9 0 0%
Oryza sativa M11585 M16845 M35384 M82048 M19228 700 309 44% 138 16 12% 22 4 18% 17 0 0% 35 0 0% 29 0 0%
Physarum polycephalum V01159 V01160 700 262 37% 113 19 17% 39 0 0% 16 0 0% 38 0 0% 41 0 0%
Phytophthora megasperma X75631 X75632 718 438 61% 135 73 54% 17 9 53% 15 3 20% 47 0 0% 30 0 0%
Plasmodium falciparum (A gene) U21939 738 408 55% 128 60 47% 37 22 59% 11 0 0% 51 9 18% 33 0 0%
Plasmodium falciparum (S gene) U48228 770 330 43% 145 71 49% 31 6 19% 20 0 0% 40 0 0% 64 9 14%
Plasmodium vivax (A gene) NPA 745 361 48% 134 55 41% 38 12 32% 10 0 0% 46 0 0% 37 0 0%
Plasmodium vivax (O gene) NPA 678 318 47% 108 47 44% 25 6 24% 24 9 38% 18 0 0% 65 9 14%
Plasmodium vivax (S gene) NPA 569 173 30% 85 28 33% 52 0 0% 11 0 0% 12 0 0% 101 19 19%
Pneumocystis carinii M86760 719 387 54% 145 104 72% 19 15 79% 19 0 0% 34 8 24% 30 0 0%
Prorocentrum micans M14649 M19230 X15973 638 260 41% 121 30 25% 31 17 55% 14 0 0% 38 8 21% 28 0 0%
Rattus norvegicus J01881 V01270 J01438 488 188 39% 109 62 57% 31 4 13% 4 0 0% 27 0 0% 57 0 0%
Saccharomyces cerevisiae U53879 739 403 55% 152 51 34% 21 10 48% 19 0 0% 35 11 31% 39 10 26%
Schizosaccharomyces japonicus Z32848 717 347 48% 145 60 41% 25 14 56% 17 0 0% 35 0 0% 29 0 0%
Schizosaccharomyces pombe J01359 Z19136 X51920 737 338 46% 142 46 32% 33 21 64% 11 0 0% 38 0 0% 32 10 31%
Sinapis alba X15915 X57137 699 338 48% 135 16 12% 30 18 60% 15 0 0% 32 0 0% 29 0 0%
Tetrahymena thermophila X54512 705 382 54% 126 80 63% 25 10 40% 23 0 0% 32 11 34% 28 0 0%
Theileria parva L28036 L28998 L26332 L26331 613 326 53% 117 47 40% 32 4 13% 20 0 0% 30 18 60% 29 0 0%
Toxoplasma gondii (P) X75453 664 374 56% 125 66 53% 34 11 32% 15 0 0% 38 12 32% 29 0 0%
Trepomonas agilis AF015455 459 184 40% 93 47 51% 11 4 36% 19 0 0% 22 0 0% 17 0 0%
Trypanosoma brucei X05682 X14553 X04986 617 187 30% 92 14 15% 48 0 0% 15 3 20% 14 0 0% 67 0 0%
Vairimorpha necatrix NPA 482 211 44% 77 29 38% 26 2 8% 33 16 48% 6 1 17% 11 0 0%
Xenopus laevis X59734 679 257 38% 124 33 27% 31 15 48% 33 0 0% 36 0 0% 55 0 0%
Zea mays NPA 483 167 35% 106 30 28% 17 4 24% 14 0 0% 36 20 56% 29 10 34%
  1. C, Number of comparative, canonical base-pairs (G-C,C-G,A-U,U-A,G-U,U-G); P, Number of base-pairs predicted in the MFold 3.1 optimal structure prediction that match comparative, canonical base-pairs; A, Accuracy of base-pair predictions in the MFold 3.1 optimal structure prediction, accuracy is calculated by dividing the number of correctly predicted Mfold base pairs by the number of canoncial, comparative base pairs within the RNA Contact Distance category.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.