Archaea   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Aeropyrum pernix AP000062 338 240 71% 38 25 66% 22 17 77% 23 0 0% 27 10 37% 3 0 0%
Archaeoglobus fulgidus X05567 AE000965 341 222 65% 32 7 22% 25 15 60% 19 1 5% 28 11 39% 3 0 0%
Haloarcula marismortui rrnA X61688 331 220 66% 32 20 63% 29 7 24% 15 0 0% 28 7 25% 3 0 0%
Haloarcula marismortui rrnB X61689 333 259 78% 32 13 41% 29 7 24% 15 9 60% 28 8 29% 3 0 0%
Halobacterium sp. AE005128 333 205 62% 32 13 41% 29 7 24% 14 0 0% 29 0 0% 3 0 0%
Haloferax volcanii K00421 333 285 86% 32 20 63% 29 7 24% 13 9 69% 29 15 52% 3 0 0%
Methanobacterium formicicum M36508 332 250 75% 31 18 58% 29 24 83% 16 9 56% 27 8 30% 3 0 0%
Methanococcus jannaschii U67517 L77117 339 233 69% 32 11 34% 29 0 0% 15 0 0% 27 0 0% 3 0 0%
Methanococcus vannielii M36507 330 223 68% 32 7 22% 30 0 0% 15 0 0% 27 0 0% 3 0 0%
Methanospirillum hungatei M60880 325 222 68% 32 17 53% 29 14 48% 16 11 69% 27 8 30% 3 0 0%
Methanothermobacter thermautotrophicus AE000930 335 250 75% 32 18 56% 28 7 25% 16 0 0% 28 0 0% 3 0 0%
Natronobacterium innermongoliae AF009601 335 278 83% 32 20 63% 29 0 0% 14 9 64% 29 15 52% 3 0 0%
Natronorubrum bangense Y14028 334 260 78% 32 19 59% 29 0 0% 14 3 21% 29 0 0% 3 0 0%
Pyrococcus abyssi AJ248283 344 263 76% 34 22 65% 24 2 8% 20 13 65% 28 8 29% 3 0 0%
Pyrococcus furiosus U20163 341 259 76% 29 8 28% 25 0 0% 19 0 0% 27 8 30% 3 0 0%
Pyrococcus horikoshii AP000001 343 263 77% 34 22 65% 24 2 8% 20 13 65% 28 8 29% 3 0 0%
Pyrodictium occultum M21087 334 227 68% 39 21 54% 23 0 0% 22 0 0% 26 10 38% 3 0 0%
Sulfolobus acidocaldarius D14876 332 236 71% 39 12 31% 23 0 0% 23 0 0% 26 9 35% 3 0 0%
Sulfolobus P2 NPA2 334 207 62% 39 11 28% 23 0 0% 22 0 0% 26 10 38% 3 0 0%
Sulfolobus solfataricus X03235 332 236 71% 39 12 31% 23 0 0% 23 0 0% 26 9 35% 3 0 0%
Thermococcus celer M21529 339 267 79% 33 20 61% 28 14 50% 17 11 65% 27 18 67% 3 0 0%
Thermoplasma acidophilum AL445067 M38637 333 244 73% 32 13 41% 30 0 0% 16 9 56% 26 0 0% 3 0 0%
Thermoproteus tenax M35966 340 256 75% 41 16 39% 23 0 0% 23 15 65% 26 9 35% 3 0 0%
Bacteria   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acidobacterium capsulatum D26171 312 174 56% 24 2 8% 27 0 0% 14 0 0% 24 0 0% 0 0 0%
Acinetobacter calcoaceticus M34139 331 176 53% 32 7 22% 27 0 0% 15 3 20% 16 0 0% 13 0 0%
Actinomyces israelii X82450 325 100 31% 34 2 6% 23 0 0% 9 0 0% 16 0 0% 0 0 0%
Aeromonas hydrophila X60407 343 205 60% 32 7 22% 22 0 0% 19 3 16% 17 0 0% 13 0 0%
Agrobacterium tumefaciens M11223 332 230 69% 27 9 33% 27 0 0% 12 0 0% 28 0 0% 3 0 0%
Allochromatium vinosum M26629 324 178 55% 32 0 0% 27 0 0% 14 0 0% 16 0 0% 10 0 0%
Anabaena sp. X59559 333 207 62% 28 12 43% 27 0 0% 15 0 0% 26 0 0% 3 0 0%
Aquifex aeolicus AE000709 AE000751 358 267 75% 41 13 32% 22 0 0% 20 0 0% 19 0 0% 13 0 0%
Aquifex pyrophilus M83548 353 269 76% 41 13 32% 22 0 0% 20 0 0% 19 0 0% 13 0 0%
Arthrobacter globiformis M23411 340 197 58% 33 2 6% 26 7 27% 16 0 0% 25 0 0% 6 0 0%
Azorhizobium caulinodans D11342 326 172 53% 27 8 30% 27 2 7% 14 0 0% 27 0 0% 3 0 0%
Bacillus anthracis X55059 296 202 68% 32 16 50% 18 0 0% 21 0 0% 13 0 0% 13 0 0%
Bacillus cereus X55060 304 238 78% 31 17 55% 23 14 61% 21 6 29% 15 2 13% 13 0 0%
Bacillus halodurans AB013373 345 268 78% 32 21 66% 23 14 61% 20 3 15% 17 0 0% 13 0 0%
Bacillus subtilis K00637 346 213 62% 32 14 44% 23 14 61% 21 0 0% 16 0 0% 13 0 0%
Bacteroides fragilis M61006 338 239 71% 32 22 69% 23 17 74% 20 12 60% 16 0 0% 13 0 0%
Bartonella bacilliformis Z11683 314 191 61% 27 2 7% 27 0 0% 13 0 0% 27 0 0% 0 0 0%
Bartonella henselae M73229 316 190 60% 27 7 26% 27 0 0% 13 0 0% 27 0 0% 0 0 0%
Bartonella quintana M11927 332 200 60% 27 7 26% 27 0 0% 12 0 0% 28 0 0% 3 0 0%
Beggiatoa sp. 1401-13 L40997 327 227 69% 31 11 35% 27 0 0% 14 3 21% 23 0 0% 6 0 0%
Bordetella bronchiseptica U04948 346 260 75% 31 16 52% 26 6 23% 17 7 41% 15 0 0% 13 9 69%
Bordetella parapertussis U04949 320 230 72% 30 14 47% 26 5 19% 17 7 41% 15 0 0% 13 9 69%
Bordetella pertussis U04950 320 224 70% 29 7 24% 26 5 19% 17 7 41% 15 0 0% 13 9 69%
Borrelia burgdorferi M88329 347 209 60% 34 13 38% 28 0 0% 15 3 20% 18 0 0% 13 0 0%
Borrelia hermsii U42292 344 215 63% 34 13 38% 28 0 0% 13 0 0% 18 0 0% 13 0 0%
Brachyspira hyodysenteriae U23035 324 187 58% 32 9 28% 26 0 0% 17 0 0% 22 0 0% 0 0 0%
Bradyrhizobium japonicum Z35330 332 212 64% 29 0 0% 27 0 0% 14 3 21% 27 0 0% 3 0 0%
Brevinema andersonii L31543 308 190 62% 30 5 17% 26 0 0% 16 0 0% 15 0 0% 13 0 0%
Brucella melitensis L26166 311 200 64% 27 7 26% 27 0 0% 11 0 0% 24 0 0% 0 0 0%
Buchnera sp. APS AP000398 323 212 66% 30 15 50% 23 3 13% 19 7 37% 17 0 0% 8 0 0%
Burkholderia mallei S55008 291 163 56% 16 7 44% 27 0 0% 15 0 0% 17 0 0% 10 0 0%
Burkholderia sp. U37342 334 219 66% 29 15 52% 24 1 4% 17 6 35% 15 0 0% 13 0 0%
Campylobacter jejuni Z29326 339 240 71% 31 14 45% 24 3 13% 17 9 53% 26 6 23% 5 2 40%
Campylobacter sputorum X67775 312 182 58% 21 7 33% 21 0 0% 22 20 91% 21 0 0% 23 0 0%
Chlamydia muridarum AE002280 347 225 65% 38 12 32% 23 0 0% 21 0 0% 16 0 0% 13 0 0%
Chlamydia trachomatis U68443 347 226 65% 38 12 32% 23 0 0% 21 0 0% 16 0 0% 13 0 0%
Chlamydophila pneumoniae L06108 351 210 60% 36 12 33% 23 7 30% 21 0 0% 16 0 0% 13 0 0%
Chlamydophila psittaci U68447 349 218 62% 35 12 34% 23 0 0% 20 0 0% 16 0 0% 13 0 0%
Chlorobium vibrioforme M62791 328 184 56% 30 8 27% 28 0 0% 16 0 0% 18 0 0% 10 0 0%
Chlorogloeopsis sp. PCC 7518 X68780 333 184 55% 28 12 43% 27 0 0% 14 8 57% 27 0 0% 3 0 0%
Chromohalobacter marismortui X87222 331 188 57% 32 7 22% 24 0 0% 18 0 0% 17 0 0% 9 0 0%
Citrobacter freundii M59291 319 163 51% 28 7 25% 24 0 0% 16 0 0% 16 0 0% 13 0 0%
Clostridium botulinum F L37593 317 242 76% 31 5 16% 26 14 54% 19 4 21% 24 1 4% 4 0 0%
Clostridium difficile X73450 317 205 65% 33 9 27% 28 0 0% 15 0 0% 27 0 0% 3 0 0%
Clostridium innocuum M23732 335 224 67% 32 9 28% 24 15 63% 22 3 14% 14 6 43% 13 0 0%
Clostridium perfringens M69264 332 174 52% 32 0 0% 26 0 0% 20 0 0% 23 0 0% 5 0 0%
Clostridium tetani X74770 331 217 66% 31 2 6% 26 13 50% 18 2 11% 25 3 12% 5 0 0%
Comamonas testosteroni M11224 343 204 59% 29 7 24% 25 0 0% 14 0 0% 17 0 0% 13 0 0%
Corynebacterium diphtheriae X84248 330 148 45% 34 7 21% 26 0 0% 16 0 0% 25 0 0% 1 0 0%
Coxiella burnetii M21291 319 191 60% 31 14 45% 22 0 0% 17 3 18% 16 0 0% 13 0 0%
Cristispira CP1 U42638 326 167 51% 33 0 0% 29 0 0% 17 0 0% 16 0 0% 9 0 0%
Deferribacter thermophilus U75602 352 232 66% 34 11 32% 23 0 0% 19 12 63% 19 0 0% 13 10 77%
Deinococcus radiodurans M21413 334 236 71% 33 7 21% 26 18 69% 14 9 64% 27 3 11% 3 0 0%
Desulfovibrio desulfuricans M34113 337 193 57% 36 12 33% 23 0 0% 20 0 0% 18 0 0% 13 0 0%
Dichelobacter nodosus M35016 346 230 66% 31 14 45% 26 0 0% 16 3 19% 17 0 0% 12 0 0%
Edwardsiella tarda AF015259 327 230 70% 31 14 45% 21 0 0% 6 3 50% 17 0 0% 0 0 0%
Enterococcus faecalis Y18293 308 234 76% 31 14 45% 23 14 61% 22 0 0% 16 0 0% 7 0 0%
Enterococcus faecium AF070223 333 243 73% 33 14 42% 23 14 61% 22 0 0% 16 0 0% 8 0 0%
environ.Eubacteria clone W15 NPA 318 236 74% 30 15 50% 17 8 47% 21 3 14% 18 0 0% 3 0 0%
Epulopiscium sp. M99572 312 131 42% 31 0 0% 28 0 0% 13 0 0% 28 0 0% 0 0 0%
Erysipelothrix rhusiopathiae M23728 327 222 68% 31 15 48% 24 0 0% 23 12 52% 12 0 0% 13 10 77%
Escherichia coli J01695 354 242 68% 31 0 0% 24 0 0% 18 0 0% 17 0 0% 13 0 0%
Eubacterium brachy Z36272 322 233 72% 30 12 40% 22 15 68% 24 5 21% 15 0 0% 12 0 0%
Francisella tularensis Z21931 339 161 47% 30 7 23% 26 0 0% 17 3 18% 17 0 0% 10 0 0%
Frankia sp. M55343 336 190 57% 33 7 21% 29 0 0% 15 3 20% 26 0 0% 3 0 0%
Fusobacterium necrophorum X74408 321 164 51% 32 10 31% 30 0 0% 13 0 0% 25 0 0% 2 0 0%
Fusobacterium nucleatum subsp. nucleatum M58683 323 222 69% 33 21 64% 26 21 81% 17 11 65% 24 5 21% 7 4 57%
Gemmata obscuriglobus X56305 314 211 67% 27 5 19% 20 7 35% 15 0 0% 28 0 0% 0 0 0%
Geotoga subterranea L10659 334 194 58% 29 9 31% 26 0 0% 13 0 0% 25 0 0% 7 0 0%
Gluconacetobacter liquefaciens X75617 334 157 47% 30 3 10% 27 0 0% 13 0 0% 28 0 0% 2 0 0%
Haemobartonella felis U95297 279 127 46% 30 8 27% 28 0 0% 18 0 0% 24 0 0% 3 0 0%
Haemophilus influenzae X87977 314 155 49% 30 7 23% 22 0 0% 17 3 18% 16 0 0% 8 0 0%
Haemophilus influenzae (operons A-F) U32741 U32744 U32755 U32847 U32697 U32708 348 189 54% 30 7 23% 22 0 0% 17 3 18% 17 0 0% 13 0 0%
Halomonas halodenitrificans L04942 338 141 42% 32 7 22% 24 0 0% 18 0 0% 17 0 0% 11 0 0%
Helicobacter pylori M88157 323 195 60% 26 0 0% 26 0 0% 12 0 0% 29 0 0% 3 0 0%
Heliobacterium chlorum M11212 329 160 49% 34 7 21% 25 0 0% 18 0 0% 23 0 0% 7 0 0%
Holophaga foetida X77215 331 206 62% 37 11 30% 27 0 0% 18 0 0% 16 0 0% 12 0 0%
Isosphaera pallida X64372 300 172 57% 31 2 6% 27 0 0% 8 0 0% 26 0 0% 6 0 0%
Klebsiella pneumoniae X80684 305 175 57% 30 7 23% 23 0 0% 18 0 0% 15 0 0% 13 0 0%
Lactobacillus acidophilus M58802 328 212 65% 31 9 29% 23 7 30% 20 3 15% 15 0 0% 13 0 0%
Lactococcus lactis subsp. lactis AE006456 344 242 70% 33 19 58% 23 14 61% 22 0 0% 16 0 0% 13 0 0%
Legionella pneumophila M59157 326 184 56% 31 7 23% 22 0 0% 17 0 0% 16 0 0% 13 0 0%
Leptonema illini M88719 337 215 64% 32 3 9% 29 0 0% 17 0 0% 24 0 0% 3 0 0%
Leptospira interrogans X17547 333 238 71% 34 9 26% 29 0 0% 16 0 0% 25 0 0% 3 0 0%
Leptospirillum ferriphilum AF356830 322 184 57% 35 15 43% 20 0 0% 17 0 0% 18 0 0% 12 0 0%
Listeria monocytogenes M58822 325 214 66% 31 13 42% 23 14 61% 22 3 14% 15 2 13% 13 0 0%
Mesorhizobium loti AP003001 332 197 59% 27 2 7% 27 0 0% 12 0 0% 28 0 0% 3 0 0%
Methylobacterium sp. Z23160 311 189 61% 28 4 14% 27 0 0% 14 0 0% 26 10 38% 3 0 0%
Methylococcus capsulatus X72771 318 128 40% 31 7 23% 26 0 0% 15 0 0% 17 0 0% 13 0 0%
Micrococcus luteus M38242 319 139 44% 30 4 13% 27 0 0% 17 0 0% 22 0 0% 5 0 0%
Microcystis aeruginosa U03402 Z28699 315 212 67% 25 8 32% 27 6 22% 13 6 46% 26 7 27% 0 0 0%
Mycobacterium avium X52918 323 137 42% 33 7 21% 27 0 0% 16 0 0% 16 0 0% 0 0 0%
Mycobacterium leprae X56657 346 90 26% 32 7 22% 23 0 0% 21 0 0% 17 0 0% 13 0 0%
Mycobacterium tuberculosis X52917 325 94 29% 32 0 0% 27 0 0% 18 0 0% 16 0 0% 0 0 0%
Mycoplasma capricolum X00921 333 203 61% 32 6 19% 29 0 0% 16 0 0% 14 0 0% 13 0 0%
Mycoplasma gallisepticum M22441 329 221 67% 31 12 39% 28 0 0% 19 3 16% 14 0 0% 13 0 0%
Mycoplasma genitalium U39694 329 205 62% 33 5 15% 28 7 25% 20 3 15% 14 0 0% 13 0 0%
Mycoplasma hyopneumoniae Y00149 337 247 73% 32 11 34% 25 12 48% 22 17 77% 14 6 43% 13 10 77%
Mycoplasma mycoides M23943 305 130 43% 30 0 0% 18 0 0% 13 0 0% 0 0 0% 10 0 0%
Mycoplasma pneumoniae M29061 315 197 63% 31 5 16% 28 18 64% 19 3 16% 14 6 43% 13 0 0%
Myxococcus xanthus M34114 337 210 62% 36 14 39% 23 0 0% 23 0 0% 14 0 0% 13 0 0%
Neisseria gonorrhoeae X07714 345 225 65% 30 14 47% 22 3 14% 17 9 53% 16 0 0% 13 0 0%
Neisseria meningitidis AE002364 346 250 72% 30 14 47% 22 0 0% 17 0 0% 16 0 0% 13 0 0%
Nocardia asteroides X80606 320 141 44% 33 15 45% 28 0 0% 16 0 0% 25 0 0% 1 0 0%
Oscillatoria agardhii X84811 325 218 67% 28 17 61% 27 17 63% 15 11 73% 25 8 32% 0 0 0%
Pasteurella multocida M35018 334 177 53% 31 7 23% 23 0 0% 19 0 0% 15 0 0% 13 0 0%
Petrotoga miotherma L10657 282 177 63% 26 7 27% 26 23 88% 12 6 50% 12 0 0% 6 0 0%
Pirellula marina X62912 312 129 41% 28 0 0% 25 0 0% 17 0 0% 24 0 0% 3 0 0%
Pirellula staleyi M34126 334 182 54% 29 10 34% 26 0 0% 12 3 25% 26 0 0% 6 0 0%
Planctomycetaceae Schlesner 670 X81948 329 227 69% 29 0 0% 26 0 0% 12 0 0% 29 0 0% 2 0 0%
Plesiomonas shigelloides X74688 310 184 59% 30 14 47% 24 0 0% 18 3 17% 16 0 0% 13 0 0%
Pleurocapsa sp. X78681 325 189 58% 27 8 30% 27 0 0% 14 0 0% 26 0 0% 0 0 0%
Porphyromonas gingivalis L16492 316 141 45% 32 0 0% 21 0 0% 21 0 0% 16 0 0% 13 10 77%
Proteus vulgaris X07652 353 210 59% 31 14 45% 24 0 0% 18 3 17% 17 0 0% 13 0 0%
Pseudomonas aeruginosa M34133 323 204 63% 32 7 22% 25 0 0% 16 3 19% 15 0 0% 13 0 0%
Pseudomonas putida D84020 345 213 62% 32 7 22% 26 0 0% 16 3 19% 17 0 0% 12 0 0%
Pseudomonas sp. U37339 328 221 67% 30 7 23% 26 0 0% 16 3 19% 16 0 0% 13 0 0%
Psychrobacter pacificensis AB016054 346 183 53% 32 13 41% 24 0 0% 17 3 18% 17 0 0% 12 0 0%
Rhodobium orientis D30792 314 215 68% 26 9 35% 27 0 0% 13 0 0% 27 0 0% 0 0 0%
Rhodoblastus acidophilus M34128 316 208 66% 28 2 7% 27 0 0% 14 0 0% 26 0 0% 3 0 0%
Rhodococcus erythropolis AF001265 336 186 55% 33 0 0% 28 0 0% 16 0 0% 26 0 0% 3 0 0%
Rickettsia bellii U11014 340 232 68% 28 9 32% 27 0 0% 12 3 25% 29 0 0% 3 0 0%
Rickettsia prowazekii M21789 340 233 69% 28 9 32% 27 0 0% 12 3 25% 29 0 0% 3 0 0%
Rickettsia rickettsii L36217 323 211 65% 27 9 33% 27 0 0% 12 3 25% 26 0 0% 2 0 0%
Salmonella typhimurium X80681 345 206 60% 31 7 23% 24 0 0% 18 3 17% 16 0 0% 13 0 0%
Serratia marcescens M59160 330 190 58% 31 7 23% 24 0 0% 16 0 0% 17 0 0% 13 0 0%
Shewanella putrefaciens X81623 345 189 55% 31 14 45% 24 0 0% 18 3 17% 17 0 0% 11 0 0%
Shigella dysenteriae X96966 332 194 58% 30 0 0% 22 0 0% 17 0 0% 17 0 0% 10 0 0%
Spirochaeta aurantia M57740 332 232 70% 33 16 48% 24 0 0% 18 3 17% 16 0 0% 13 0 0%
Staphylococcus aureus L36472 342 216 63% 31 2 6% 23 14 61% 20 0 0% 17 0 0% 13 0 0%
Streptobacillus moniliformis Z35305 322 141 44% 33 0 0% 25 0 0% 19 0 0% 22 0 0% 7 0 0%
Streptococcus mutans X58303 279 181 65% 28 19 68% 21 0 0% 6 3 50% 14 0 0% 0 0 0%
Streptococcus pneumoniae X58312 279 200 72% 28 19 68% 22 14 64% 7 3 43% 13 0 0% 0 0 0%
Streptococcus pyogenes X59029 267 116 43% 25 0 0% 21 0 0% 7 3 43% 13 0 0% 0 0 0%
Streptomyces acidiscabies D63865 340 198 58% 33 19 58% 28 17 61% 13 0 0% 28 0 0% 4 0 0%
Streptomyces albidoflavus Z76676 327 185 57% 33 15 45% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces albus X53163 271 153 56% 31 7 23% 17 0 0% 13 0 0% 8 0 0% 1 0 0%
Streptomyces ambofaciens M27245 340 176 52% 33 11 33% 28 17 61% 13 0 0% 28 0 0% 4 0 0%
Streptomyces bikiniensis X79851 339 188 55% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces bluensis X79324 339 198 58% 33 8 24% 27 0 0% 14 0 0% 27 0 0% 5 0 0%
Streptomyces bottropensis D63868 340 169 50% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces brasiliensis X53162 274 159 58% 31 8 26% 17 0 0% 13 0 0% 0 0 0% 0 0 0%
Streptomyces caelestis X80824 339 204 60% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces coelicolor Y00411 335 191 57% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces diastaticus X53161 255 155 61% 23 8 35% 15 0 0% 9 0 0% 0 0 0% 0 0 0%
Streptomyces diastatochromogenes D63867 340 204 60% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces espinosus X80826 338 177 52% 33 11 33% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces eurythermus D63870 339 201 59% 33 7 21% 27 0 0% 14 3 21% 27 0 0% 5 0 0%
Streptomyces felleus Z76681 327 185 57% 33 15 45% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces galbus X79325 336 186 55% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces glaucescens X79322 338 216 64% 33 26 79% 28 17 61% 13 7 54% 28 20 71% 4 1 25%
Streptomyces gougerotii Z76687 328 156 48% 33 11 33% 28 17 61% 13 0 0% 25 0 0% 0 0 0%
Streptomyces griseus X61478 337 165 49% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces hygroscopicus X79853 338 167 49% 33 8 24% 28 6 21% 13 7 54% 28 9 32% 4 1 25%
Streptomyces intermedius Z76686 326 200 61% 33 8 24% 28 0 0% 13 0 0% 25 0 0% 0 0 0%
Streptomyces lavendulae X53173 266 187 70% 28 8 29% 15 0 0% 9 0 0% 0 0 0% 0 0 0%
Streptomyces limosus Z76679 327 185 57% 33 15 45% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces lincolnensis X79854 339 183 54% 33 0 0% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces macrosporus Z68099 329 173 53% 33 8 24% 27 17 63% 14 0 0% 27 0 0% 1 0 0%
Streptomyces mashuensis X79323 335 220 66% 33 25 76% 27 17 63% 14 7 50% 27 19 70% 5 2 40%
Streptomyces megasporus Z68100 334 219 66% 33 26 79% 25 6 24% 16 0 0% 26 0 0% 2 0 0%
Streptomyces neyagawaensis D63869 340 190 56% 33 0 0% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces nodosus AF114033 339 195 58% 33 0 0% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces odorifer Z76682 328 185 56% 33 15 45% 27 0 0% 14 0 0% 25 0 0% 0 0 0%
Streptomyces ornatus X79326 335 132 39% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces pseudogriseolus X80827 338 216 64% 33 26 79% 28 17 61% 13 7 54% 28 20 71% 4 1 25%
Streptomyces purpureus X53170 257 126 49% 23 0 0% 15 0 0% 9 0 0% 0 0 0% 0 0 0%
Streptomyces rimosus X62884 333 179 54% 31 15 48% 28 0 0% 14 0 0% 27 0 0% 5 0 0%
Streptomyces rutgersensis Z76688 328 156 48% 33 11 33% 28 17 61% 13 0 0% 25 0 0% 0 0 0%
Streptomyces sampsonii D63871 340 221 65% 33 26 79% 27 17 63% 14 7 50% 27 19 70% 5 2 40%
Streptomyces scabiei D63862 342 180 53% 33 0 0% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces setonii D63872 340 192 56% 33 8 24% 27 0 0% 14 0 0% 27 0 0% 5 0 0%
Streptomyces sp. D63866 339 193 57% 33 8 24% 28 6 21% 13 7 54% 28 0 0% 4 0 0%
Streptomyces subrutilus X80825 338 189 56% 33 8 24% 28 0 0% 13 0 0% 28 0 0% 4 0 0%
Streptomyces tendae D63873 339 186 55% 33 18 55% 28 17 61% 13 0 0% 28 0 0% 4 0 0%
Streptomyces thermodiastaticus Z68101 326 149 46% 33 18 55% 27 17 63% 14 0 0% 27 0 0% 1 0 0%
Streptomyces thermolineatus Z68097 330 183 55% 33 14 42% 28 0 0% 13 3 23% 28 0 0% 0 0 0%
Streptomyces thermoviolaceus Z68096 330 188 57% 33 7 21% 27 0 0% 14 3 21% 27 0 0% 1 0 0%
Streptomyces thermovulgaris Z68098 334 197 59% 33 7 21% 27 0 0% 14 0 0% 26 0 0% 2 0 0%
Synechococcus sp. PCC 6301 X03538 332 216 65% 26 1 4% 27 0 0% 15 0 0% 26 0 0% 3 0 0%
Synechocystis sp. PCC 6803 D64000 D90916 334 149 45% 27 1 4% 27 0 0% 14 0 0% 27 0 0% 3 0 0%
Thermomicrobium roseum M34115 335 179 53% 34 11 32% 23 17 74% 24 0 0% 19 0 0% 7 0 0%
Thermotoga maritima M21774 354 253 71% 33 23 70% 22 7 32% 20 0 0% 19 3 16% 13 0 0%
Thermus aquaticus L09663 326 216 66% 32 17 53% 29 17 59% 12 3 25% 25 0 0% 4 0 0%
Thermus thermophilus X07998 341 227 67% 32 15 47% 27 18 67% 15 6 40% 21 0 0% 9 0 0%
Treponema pallidum (rRNA A) AE001204 348 217 62% 33 0 0% 24 0 0% 19 8 42% 18 0 0% 13 10 77%
Tropheryma whipplei mw040 X99636 340 224 66% 31 7 23% 25 0 0% 20 8 40% 21 6 29% 7 4 57%
Ureaplasma urealyticum AE002112 326 207 63% 33 12 36% 27 15 56% 20 11 55% 14 6 43% 13 9 69%
Vibrio cholerae X76337 347 234 67% 30 14 47% 22 0 0% 16 3 19% 18 0 0% 11 0 0%
Vibrio parahaemolyticus X56580 316 155 49% 29 13 45% 21 0 0% 23 3 13% 15 0 0% 13 0 0%
Xanthomonas albilineans X95918 334 165 49% 32 7 22% 24 0 0% 18 0 0% 17 0 0% 9 0 0%
Xanthomonas campestris NPA 327 149 46% 28 7 25% 21 0 0% 17 0 0% 17 0 0% 13 0 0%
Xylella fastidiosa AE003861 344 163 47% 32 7 22% 24 0 0% 18 0 0% 17 0 0% 13 0 0%
Yersinia pestis L37604 327 216 66% 30 14 47% 22 0 0% 17 3 18% 17 0 0% 10 0 0%
Yersinia pseudotuberculosis Z21939 333 214 64% 30 14 47% 24 0 0% 18 3 17% 17 0 0% 12 0 0%
Eukaryotic Chloroplast   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Apodanthes sp NPA 322 190 59% 31 8 26% 23 0 0% 9 0 0% 28 0 0% 3 0 0%
Astasia longa X14386 332 191 58% 26 2 8% 25 0 0% 18 0 0% 24 0 0% 3 0 0%
Babesia bovis U06105 307 167 54% 32 20 63% 13 3 23% 21 10 48% 18 0 0% 7 0 0%
Chlamydomonas humicola AF374186 276 185 67% 29 17 59% 27 20 74% 15 14 93% 21 9 43% 0 0 0%
Chlamydomonas reinhardtii J01395 321 191 60% 28 6 21% 27 17 63% 16 7 44% 23 10 43% 3 0 0%
Chlorella vulgaris AB001684 333 248 74% 28 8 29% 27 24 89% 16 10 63% 24 14 58% 3 0 0%
Corethron criophilum NPA 321 183 57% 26 6 23% 23 0 0% 17 0 0% 22 0 0% 3 0 0%
Cryptomonas sp. X56805 328 157 48% 28 0 0% 23 0 0% 14 0 0% 25 0 0% 3 0 0%
Cyanidium caldarium X52985 328 207 63% 29 11 38% 23 0 0% 13 3 23% 25 0 0% 3 0 0%
Cyanophora paradoxa X81840 329 222 67% 31 14 45% 25 0 0% 14 0 0% 26 0 0% 3 0 0%
Cynomorium coccineum U67743 308 107 35% 28 0 0% 23 0 0% 17 0 0% 22 0 0% 3 0 0%
Cytinus ruber U47845 320 181 57% 29 8 28% 22 0 0% 14 0 0% 25 0 0% 3 0 0%
Emiliania huxleyi X82156 322 192 60% 27 2 7% 23 6 26% 15 7 47% 24 8 33% 2 0 0%
Euglena gracilis X12890 V00159 321 81 25% 32 0 0% 28 0 0% 17 0 0% 24 0 0% 3 0 0%
Glaucocystis nostochinearum X82496 325 194 60% 34 26 76% 23 14 61% 17 0 0% 23 0 0% 5 0 0%
Gloeochaete wittrockiana X82495 326 192 59% 35 16 46% 23 0 0% 16 0 0% 23 0 0% 5 0 0%
Heterosigma akashiwo M82860 329 223 68% 31 16 52% 20 14 70% 23 11 48% 16 0 0% 9 0 0%
Hydnora africana U67745 307 206 67% 32 13 41% 21 12 57% 12 1 8% 26 0 0% 3 0 0%
Marchantia polymorpha X04465 317 196 62% 28 9 32% 23 17 74% 14 10 71% 25 9 36% 3 0 0%
Mitrastema yamamotoi U67742 304 108 36% 26 0 0% 23 0 0% 13 0 0% 24 0 0% 3 0 0%
Nicotiana tabacum V00165 321 164 51% 28 0 0% 21 0 0% 17 0 0% 24 0 0% 3 0 0%
Palmaria palmata Z18289 322 178 55% 25 1 4% 23 0 0% 13 0 0% 25 0 0% 3 0 0%
Pilostyles thurberi U67741 299 140 47% 36 14 39% 23 0 0% 5 0 0% 15 0 0% 0 0 0%
Plasmodium falciparum (plastid-like) X57167 X95275 311 109 35% 35 0 0% 20 0 0% 18 0 0% 22 0 0% 3 0 0%
Plasmodium vivax AF040974 196 81 41% 23 1 4% 19 17 89% 8 0 0% 14 0 0% 0 0 0%
Polytoma obtusum AF374187 274 149 54% 29 0 0% 24 0 0% 16 0 0% 24 0 0% 1 0 0%
Polytoma oviforme AF374188 273 184 67% 32 20 63% 27 20 74% 16 12 75% 22 0 0% 0 0 0%
Polytoma uvella AF374189 334 140 42% 33 0 0% 23 0 0% 13 0 0% 21 0 0% 13 0 0%
Pylaiella littoralis X14873 317 126 40% 34 0 0% 25 0 0% 15 0 0% 22 0 0% 3 0 0%
Ricinus communis L37580 313 173 55% 27 0 0% 26 0 0% 15 0 0% 26 0 0% 0 0 0%
Skeletonema pseudocostatum X82155 319 157 49% 30 8 27% 23 0 0% 17 3 18% 22 0 0% 2 0 0%
Toxoplasma gondii (plastid-like) U87145 332 176 53% 26 0 0% 22 0 0% 10 6 60% 26 0 0% 4 0 0%
Zea mays Z00028 326 173 53% 27 0 0% 27 0 0% 14 0 0% 26 0 0% 3 0 0%
Eukaryotic Mitochondrion   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U03732 305 127 42% 35 4 11% 13 0 0% 21 0 0% 24 0 0% 7 0 0%
Afrixalus fornasini NPA 150 50 33% 35 0 0% 22 0 0% 2 0 0% 0 0 0% 0 0 0%
Albinaria caerulea X83390 134 55 41% 23 6 26% 18 0 0% 3 0 0% 0 0 0% 0 0 0%
Alligator mississippiensis L28074 144 54 38% 37 12 32% 15 0 0% 9 0 0% 3 0 0% 0 0 0%
Amblysomus hottentotus M95108 163 56 34% 36 0 0% 22 6 27% 5 0 0% 0 0 0% 3 0 0%
Anas platyrhynchos L16770 164 60 37% 36 0 0% 25 0 0% 5 0 0% 0 0 0% 3 0 0%
Anopheles gambiae L20934 143 47 33% 35 0 0% 17 0 0% 1 0 0% 3 0 0% 0 0 0%
Anopheles quadrimaculatus L04272 143 53 37% 35 0 0% 17 0 0% 0 0 0% 2 0 0% 0 0 0%
Antilocapra americana M55540 176 70 40% 38 23 61% 22 10 45% 7 0 0% 0 0 0% 3 0 0%
Apis mellifera L06178 S51650 137 34 25% 27 0 0% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Artemia franciscana X69067 127 9 7% 23 0 0% 16 0 0% 3 0 0% 0 0 0% 0 0 0%
Ascaris suum X54253 117 21 18% 23 0 0% 16 0 0% 2 0 0% 0 0 0% 0 0 0%
Aspergillus nidulans J01393 289 116 40% 43 0 0% 18 0 0% 18 0 0% 16 0 0% 3 0 0%
Asterina pectinifera D16387 141 69 49% 33 7 21% 16 0 0% 8 0 0% 3 0 0% 0 0 0%
Balaenoptera musculus X72204 164 95 58% 38 8 21% 18 10 56% 9 0 0% 0 0 0% 3 0 0%
Bos taurus J01394 V00654 164 79 48% 36 14 39% 20 9 45% 6 0 0% 0 0 0% 3 0 0%
Bufo boreas boreas Thesis, Goebel A. 150 54 36% 38 33 87% 23 14 61% 3 0 0% 3 0 0% 0 0 0%
Bufo peltocephalus Thesis, Goebel A. 146 57 39% 38 31 82% 23 16 70% 4 0 0% 3 0 0% 0 0 0%
Caenorhabditis elegans X54252 124 28 23% 23 7 30% 17 5 29% 2 0 0% 0 0 0% 0 0 0%
Cafeteria roenbergensis AF193903 300 108 36% 42 18 43% 24 0 0% 21 0 0% 6 0 0% 24 0 0%
Ceratophrys sp. Thesis, Goebel A. 146 67 46% 34 9 26% 19 6 32% 4 0 0% 0 0 0% 0 0 0%
Chlamydomonas eugametos AF008237 260 159 61% 32 7 22% 20 0 0% 13 0 0% 13 0 0% 2 0 0%
Chlamydomonas reinhardtii X54860 199 73 37% 29 8 28% 15 0 0% 26 12 46% 0 0 0% 3 0 0%
Chondrus crispus Z30950 Z47547 281 95 34% 31 2 6% 23 1 4% 12 2 17% 20 0 0% 3 0 0%
Chorthippus parallelus ESC X95574 142 22 15% 27 23 85% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Chorthippus parallelus NOR X95575 142 22 15% 27 23 85% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Chrysodidymus synuroideus NPA 324 143 44% 42 8 19% 13 0 0% 19 0 0% 21 0 0% 8 0 0%
Chrysodidymus synuroideus mg AF222718 339 149 44% 42 8 19% 13 0 0% 20 0 0% 22 0 0% 7 0 0%
Coscoroba coscoroba S76216 167 88 53% 36 0 0% 25 0 0% 5 0 0% 0 0 0% 3 0 0%
Coturnix coturnix X57245 154 56 36% 33 14 42% 24 0 0% 4 0 0% 0 0 0% 3 0 0%
Crithidia fasciculata X02548 47 8 17% 0 0 0% 8 0 0% 0 0 0% 0 0 0% 0 0 0%
Crossostoma lacustre M91245 170 86 51% 36 7 19% 22 7 32% 5 0 0% 0 0 0% 3 0 0%
Cygnus melancoryphus S76217 170 90 53% 36 4 11% 25 3 12% 5 0 0% 0 0 0% 3 0 0%
Cyprinus carpio X61010 163 105 64% 35 6 17% 22 14 64% 5 0 0% 0 0 0% 3 0 0%
Damaliscus pygargus M86499 164 46 28% 35 0 0% 20 0 0% 6 0 0% 1 0 0% 2 0 0%
Daphnia pulex Z15015 139 32 23% 23 2 9% 18 0 0% 3 0 0% 0 0 0% 0 0 0%
Dictyostelium discoideum D16466 253 117 46% 38 9 24% 14 0 0% 19 0 0% 27 0 0% 2 0 0%
Didelphis virginiana Z29573 165 66 40% 36 9 25% 22 7 32% 5 0 0% 0 0 0% 3 0 0%
Drosophila teissieri X54011 140 40 29% 38 0 0% 17 0 0% 2 0 0% 1 0 0% 0 0 0%
Drosophila virilis X05914 161 27 17% 39 0 0% 19 0 0% 3 0 0% 0 0 0% 0 0 0%
Drosophila yakuba X03240 140 40 29% 38 0 0% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Eleutherodactylus coqui NPA 132 38 29% 35 1 3% 8 0 0% 9 0 0% 0 0 0% 0 0 0%
Equus caballus X79547 163 85 52% 35 11 31% 17 2 12% 11 5 45% 0 0 0% 3 0 0%
Farfantepenaeus notialis X84357 147 51 35% 32 0 0% 25 0 0% 2 0 0% 3 0 0% 0 0 0%
Felis catus U20753 160 58 36% 36 5 14% 22 8 36% 6 0 0% 0 0 0% 3 0 0%
Gallus gallus X52392 158 57 36% 34 0 0% 21 0 0% 7 0 0% 0 0 0% 3 0 0%
Glycine max M16859 294 83 28% 26 0 0% 0 0 0% 16 0 0% 15 0 0% 63 0 0%
Harpactes ardens U94810 148 54 36% 36 5 14% 18 0 0% 9 0 0% 0 0 0% 3 0 0%
Harpochytrium 94 AY182005 229 103 45% 35 14 40% 25 2 8% 31 0 0% 0 0 0% 2 0 0%
Herpetomonas megaseliae U01006 25 3 12% 0 0 0% 9 0 0% 0 0 0% 0 0 0% 0 0 0%
Homo sapiens J01415 164 67 41% 39 7 18% 27 21 78% 3 0 0% 0 0 0% 3 3 100%
Katharina tunicata U09810 127 9 7% 23 0 0% 25 0 0% 0 0 0% 3 0 0% 0 0 0%
Latimeria chalumnae Z21921 149 58 39% 34 4 12% 20 0 0% 6 0 0% 0 0 0% 3 0 0%
Leishmania tarentolae M10126 47 12 26% 0 0 0% 8 0 0% 0 0 0% 0 0 0% 0 0 0%
Locusta migratoria X80245 133 10 8% 25 0 0% 17 0 0% 3 0 0% 0 0 0% 0 0 0%
Loxodonta africana U60182 D50847 163 59 36% 35 0 0% 22 0 0% 5 0 0% 0 0 0% 3 0 0%
Lumbricus terrestris U24570 120 22 18% 26 0 0% 24 10 42% 0 0 0% 2 0 0% 0 0 0%
Lutreolina crassicaudata U33494 170 46 27% 38 3 8% 22 0 0% 5 0 0% 0 0 0% 3 0 0%
Macropus giganteus X86941 162 66 41% 37 6 16% 21 9 43% 5 0 0% 0 0 0% 3 0 0%
Magicicada tredecim NPA 131 17 13% 22 0 0% 17 0 0% 0 0 0% 0 0 0% 0 0 0%
Marchantia polymorpha M68292 260 148 57% 61 5 8% 15 0 0% 21 0 0% 14 0 0% 36 0 0%
Metridium senile S75445 214 107 50% 28 0 0% 18 0 0% 18 0 0% 0 0 0% 2 0 0%
Monosiga brevicollis AF538053 285 170 60% 28 0 0% 7 0 0% 27 7 26% 15 8 53% 15 0 0%
Mus musculus J01420 159 64 40% 35 17 49% 23 8 35% 5 0 0% 0 0 0% 3 0 0%
Muscardinus avellanarius X84384 163 79 48% 38 7 18% 21 5 24% 5 2 40% 0 0 0% 3 0 0%
Mytilus edulis M83756 129 36 28% 32 0 0% 17 7 41% 7 0 0% 12 0 0% 0 0 0%
Nephroselmis olivacea AF110138 321 175 55% 38 6 16% 23 0 0% 12 0 0% 26 0 0% 3 0 0%
Neurospora crassa L33367 214 61 29% 53 10 19% 6 0 0% 15 0 0% 19 0 0% 23 0 0%
Ochromonas danica AF287134 340 113 33% 37 13 35% 13 0 0% 21 0 0% 23 0 0% 6 0 0%
Oenothera berteriana X61277 291 76 26% 28 0 0% 0 0 0% 31 0 0% 14 0 0% 48 0 0%
Oncorhynchus mykiss L29771 162 55 34% 36 5 14% 21 7 33% 4 0 0% 0 0 0% 3 0 0%
Ornithorhynchus anatinus U33498 X83427 158 47 30% 37 14 38% 22 6 27% 2 0 0% 0 0 0% 3 0 0%
Pan troglodytes D38113 165 54 33% 36 3 8% 23 0 0% 3 0 0% 0 0 0% 3 0 0%
Paracentrotus lividus J04815 148 69 47% 28 0 0% 23 0 0% 0 0 0% 3 0 0% 0 0 0%
Paramecium tetraurelia K01751 229 42 18% 57 13 23% 23 0 0% 17 0 0% 12 0 0% 13 0 0%
Pedinomonas minor AF116775 251 88 35% 33 0 0% 25 0 0% 14 0 0% 0 0 0% 3 0 0%
Penicillium chrysogenum Z23072 249 116 47% 41 0 0% 18 0 0% 14 0 0% 20 0 0% 3 0 0%
Petromyzon marinus U11880 137 43 31% 39 4 10% 22 0 0% 3 0 0% 2 0 0% 1 0 0%
Phalanger orientalis U33496 160 48 30% 36 0 0% 22 0 0% 5 0 0% 0 0 0% 3 0 0%
Phascogale tapoatafa U33497 176 70 40% 34 0 0% 25 0 0% 4 0 0% 0 0 0% 3 0 0%
Phoca vitulina X63726 158 55 35% 37 15 41% 21 0 0% 6 0 0% 0 0 0% 3 0 0%
Physarum polycephalum X75592 285 69 24% 45 0 0% 15 0 0% 22 0 0% 1 0 0% 30 0 0%
Phytophthora infestans U17009 322 181 56% 42 20 48% 23 0 0% 17 3 18% 22 0 0% 3 0 0%
Pichia canadensis D49702 D31785 221 99 45% 42 8 19% 19 0 0% 14 0 0% 9 0 0% 13 0 0%
Podospora anserina X14734 232 67 29% 55 5 9% 0 0 0% 24 3 13% 8 0 0% 28 0 0%
Porphyra purpurea AF114794 289 123 43% 31 0 0% 21 0 0% 12 3 25% 21 0 0% 3 0 0%
Protopterus dolloi L42813 163 72 44% 32 0 0% 23 0 0% 2 0 0% 0 0 0% 3 0 0%
Prototheca wickerhamii X15435 319 194 61% 47 21 45% 32 7 22% 12 0 0% 18 0 0% 13 0 0%
Puma concolor U33495 159 76 48% 36 8 22% 21 7 33% 6 0 0% 0 0 0% 3 0 0%
Pylaiella littoralis X14874 261 87 33% 39 0 0% 22 0 0% 13 0 0% 26 0 0% 3 0 0%
Rana catesbeiana X12841 159 64 40% 37 8 22% 25 10 40% 3 0 0% 2 0 0% 1 0 0%
Rattus norvegicus J01438 157 59 38% 34 11 32% 25 8 32% 3 0 0% 0 0 0% 3 3 100%
Reclinomonas americana AF007261 345 257 74% 55 20 36% 14 0 0% 23 3 13% 22 0 0% 9 0 0%
Rhizopus stolonifer NPA 280 182 65% 44 23 52% 12 0 0% 30 8 27% 11 5 45% 7 4 57%
Rhodomonas salina AF288090 301 95 32% 43 12 28% 26 0 0% 13 0 0% 21 0 0% 3 0 0%
Saccharomyces cerevisiae V00704 271 112 41% 44 4 9% 21 0 0% 10 0 0% 14 0 0% 13 0 0%
Salmo salar U12143 161 67 42% 36 7 19% 22 0 0% 4 0 0% 0 0 0% 3 0 0%
Sceloporus undulatus L28075 152 82 54% 35 0 0% 20 7 35% 5 3 60% 0 0 0% 3 0 0%
Schizosaccharomyces pombe X15738 291 152 52% 33 0 0% 13 0 0% 21 0 0% 19 0 0% 5 0 0%
Scyliorhinus canicula Y16067 157 68 43% 36 0 0% 26 6 23% 3 0 0% 0 0 0% 3 0 0%
Secale cereale Z14059 281 71 25% 39 0 0% 0 0 0% 19 0 0% 21 0 0% 54 0 0%
Sphenodon punctatus L28076 149 47 32% 33 0 0% 20 0 0% 4 0 0% 1 0 0% 1 0 0%
Spizellomyces punctatus AF404303 243 94 39% 33 0 0% 23 8 35% 22 8 36% 0 0 0% 3 0 0%
Stenella coeruleoalba X78169 162 55 34% 37 22 59% 15 10 67% 12 9 75% 0 0 0% 3 0 0%
Suillus sinuspaulianus L47584 342 131 38% 65 9 14% 53 7 13% 10 0 0% 12 0 0% 33 0 0%
Tetrahymena pyriformis M12714 241 68 28% 62 29 47% 15 0 0% 17 0 0% 19 0 0% 18 0 0%
Trachemys scripta L28077 143 49 34% 35 0 0% 19 0 0% 7 0 0% 0 0 0% 3 0 0%
Triticum aestivum Z14078 281 71 25% 39 0 0% 0 0 0% 21 0 0% 25 0 0% 48 0 0%
Trypanosoma brucei X02547 50 3 6% 0 0 0% 9 0 0% 0 0 0% 0 0 0% 0 0 0%
Williopsis saturnus var. mrakii X71392 229 114 50% 40 11 28% 15 0 0% 18 0 0% 9 0 0% 13 0 0%
Xenopus laevis M27605 161 82 51% 37 11 30% 23 0 0% 5 0 0% 0 0 0% 3 0 0%
Zea mays X00794 292 122 42% 37 6 16% 0 0 0% 22 0 0% 25 0 0% 50 0 0%
Eukaryotic Nuclear   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U07413 342 136 40% 57 9 16% 25 0 0% 16 0 0% 15 0 0% 35 0 0%
Agmasoma penaei NPA 221 107 48% 24 14 58% 16 0 0% 19 0 0% 0 0 0% 0 0 0%
Ahnfeltia plicata Z14139 338 185 55% 33 5 15% 18 0 0% 15 0 0% 28 0 0% 12 0 0%
Alexandrium fundyense U09048 291 83 29% 28 0 0% 19 0 0% 14 0 0% 28 0 0% 13 0 0%
Amblyospora sp. U68474 277 95 34% 30 0 0% 34 0 0% 15 0 0% 17 0 0% 3 0 0%
Ameson michaelis L15741 251 50 20% 25 0 0% 23 0 0% 18 0 0% 8 0 0% 3 0 0%
Androctonus australis X77908 324 140 43% 30 0 0% 21 0 0% 12 0 0% 23 0 0% 13 0 0%
Antonospora scoticae AF024655 265 73 28% 33 0 0% 23 0 0% 18 0 0% 22 0 0% 3 0 0%
Artemia salina X01723 323 128 40% 31 0 0% 21 0 0% 13 0 0% 23 0 0% 12 0 0%
Audouinella dasyae L26181 341 188 55% 33 5 15% 18 0 0% 15 0 0% 28 0 0% 13 10 77%
Audouinella hermannii AF026040 342 191 56% 32 4 13% 17 0 0% 16 0 0% 28 0 0% 13 10 77%
Aulacoseira ambigua X85404 341 97 28% 30 0 0% 21 0 0% 13 0 0% 22 0 0% 14 0 0%
Babesia bigemina X59604 295 75 25% 33 0 0% 25 0 0% 10 0 0% 21 0 0% 13 0 0%
Bacillidium sp. AF104087 261 107 41% 32 4 13% 21 0 0% 15 0 0% 22 0 0% 3 0 0%
Balamuthia mandrillaris AF019071 326 142 44% 25 7 28% 25 0 0% 23 0 0% 11 0 0% 32 0 0%
Balbiania investiens AF132294 326 164 50% 32 4 13% 18 0 0% 15 0 0% 28 0 0% 8 0 0%
Bangia sp. (Northwest Territories/NWT) AF043355 341 126 37% 33 8 24% 19 0 0% 14 0 0% 26 0 0% 15 0 0%
Bangiopsis subsimplex AF168627 335 159 47% 34 5 15% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Batrachospermum gelatinosum AF026045 339 151 45% 31 1 3% 18 0 0% 15 0 0% 28 0 0% 13 0 0%
Batrachospermum macrosporum AF026048 337 142 42% 31 0 0% 17 0 0% 16 0 0% 28 0 0% 13 0 0%
Bonnemaisonia hamifera L26182 337 164 49% 31 6 19% 16 0 0% 18 0 0% 27 0 0% 13 0 0%
Bostrychia moritziana AF203893 341 161 47% 32 12 38% 14 0 0% 18 0 0% 29 0 0% 13 0 0%
Candida albicans M60302 345 187 54% 32 3 9% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Ceramium rubrum L26183 342 154 45% 31 3 10% 17 0 0% 15 0 0% 29 0 0% 13 10 77%
Chlorella luteoviridis X73998 336 150 45% 33 0 0% 18 0 0% 13 0 0% 22 0 0% 13 0 0%
Chondrus crispus Z14140 342 198 58% 32 4 13% 16 0 0% 16 0 0% 29 0 0% 13 0 0%
Compsopogon coeruleus AF087124 324 116 36% 32 0 0% 19 0 0% 14 0 0% 28 0 0% 13 0 0%
Corallina officinalis L26184 349 161 46% 32 4 13% 16 0 0% 16 0 0% 29 0 0% 13 0 0%
Crossodonthina koreana Z36893 322 135 42% 32 4 13% 20 0 0% 13 0 0% 23 0 0% 11 0 0%
Cryptocercus punctulatus NPA 333 131 39% 32 4 13% 19 0 0% 11 0 0% 20 0 0% 23 0 0%
Cryptococcus neoformans var. neoformans L05428 348 213 61% 33 3 9% 18 0 0% 13 0 0% 23 0 0% 13 0 0%
Culicosporella lunata AF027683 284 146 51% 29 0 0% 29 0 0% 17 0 0% 15 0 0% 3 0 0%
Cyanophora paradoxa X68483 346 174 50% 33 0 0% 19 0 0% 13 0 0% 22 0 0% 13 0 0%
Cymatosira belgica X85387 338 132 39% 23 0 0% 18 0 0% 12 0 0% 15 0 0% 35 0 0%
Cyrtohymena citrina AF164135 340 154 45% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Dixonielloa grisea L26187 337 144 43% 33 7 21% 17 0 0% 15 0 0% 28 0 0% 11 0 0%
Drosophila melanogaster M21017 329 160 49% 37 4 11% 20 0 0% 21 0 0% 13 0 0% 38 0 0%
Echinococcus granulosus U27015 286 97 34% 26 0 0% 24 0 0% 19 0 0% 19 0 0% 43 0 0%
Edhazardia aedis AF027684 285 110 39% 59 20 34% 33 0 0% 29 0 0% 4 0 0% 3 0 0%
Encephalitozoon cuniculi X98467 271 73 27% 25 0 0% 20 0 0% 28 0 0% 8 0 0% 3 0 0%
Encephalitozoon hellem AF118143 268 67 25% 26 0 0% 22 0 0% 27 5 19% 10 0 0% 3 0 0%
Encephalitozoon sp. L16867 261 72 28% 26 0 0% 23 0 0% 26 0 0% 10 0 0% 3 0 0%
Endoreticulatus schubergi L39109 261 91 35% 24 0 0% 30 0 0% 28 0 0% 0 0 0% 3 0 0%
Engelmanniella mobilis AF164134 340 179 53% 28 0 0% 19 0 0% 13 6 46% 29 0 0% 13 0 0%
Enterocytozoonidae gen. sp. AF201911 250 124 50% 27 21 78% 29 0 0% 22 5 23% 5 0 0% 0 0 0%
Erythrotrichia carnea L26189 349 170 49% 34 0 0% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Euglypha rotunda X77692 343 197 57% 29 3 10% 21 0 0% 13 0 0% 22 0 0% 13 0 0%
Euplotes aediculatus M14590 331 105 32% 28 1 4% 18 0 0% 12 0 0% 21 0 0% 23 0 0%
Flabelliforma montana AJ252962 213 61 29% 22 0 0% 11 4 36% 11 0 0% 10 0 0% 3 0 0%
Fragaria x ananassa X15590 338 136 40% 33 6 18% 19 0 0% 14 0 0% 27 0 0% 13 0 0%
Gastrostyla steinei AF164133 339 154 45% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Gelidium vagum L26190 339 165 49% 32 4 13% 16 0 0% 17 0 0% 28 0 0% 13 0 0%
Genicularia spirotaenia X74753 339 158 47% 34 5 15% 19 0 0% 13 0 0% 22 0 0% 13 0 0%
Giardia ardeae Z17210 261 115 44% 29 0 0% 23 0 0% 15 0 0% 22 0 0% 2 0 0%
Giardia intestinalis X52949 259 71 27% 23 0 0% 30 0 0% 18 0 0% 23 12 52% 2 0 0%
Giardia muris X65063 256 99 39% 31 0 0% 20 0 0% 14 0 0% 21 0 0% 2 0 0%
Glaucocystis nostochinearum X70803 345 150 43% 31 0 0% 21 0 0% 13 0 0% 22 0 0% 13 0 0%
Gloeochaete wittrockiana X81901 344 150 44% 34 5 15% 18 0 0% 13 0 0% 22 0 0% 13 0 0%
Glomus intraradices X58725 318 168 53% 23 0 0% 20 0 0% 13 0 0% 20 0 0% 0 0 0%
Glugea atherinae U15987 252 135 54% 32 7 22% 20 0 0% 26 3 12% 12 0 0% 3 0 0%
Glugea stephani AF056015 228 130 57% 26 0 0% 13 0 0% 19 0 0% 2 0 0% 0 0 0%
Gracilariopsis sp. M33639 342 186 54% 32 11 34% 15 0 0% 17 0 0% 29 0 0% 13 10 77%
Halymenia plana U33133 341 148 43% 32 4 13% 16 0 0% 17 0 0% 28 0 0% 13 0 0%
Hexamita sp. Z17224 261 105 40% 30 0 0% 25 0 0% 18 0 0% 15 0 0% 9 0 0%
Hildenbrandia rubra L19345 345 157 46% 34 0 0% 16 0 0% 18 0 0% 27 0 0% 9 0 0%
Homo sapiens K03432 364 141 39% 22 1 5% 23 0 0% 11 0 0% 33 0 0% 13 0 0%
Ichthyosporidium sp. L39110 244 94 39% 32 4 13% 18 0 0% 28 0 0% 10 0 0% 3 0 0%
Janacekia debaisieuxi AJ252950 264 119 45% 33 0 0% 22 0 0% 17 0 0% 21 0 0% 3 0 0%
Lecanora dispersa NPA 288 81 28% 23 0 0% 12 0 0% 7 0 0% 20 0 0% 0 0 0%
Lilioceris lilii NPA 339 196 58% 22 4 18% 24 0 0% 23 0 0% 10 0 0% 28 0 0%
Loma acerinae AJ252951 258 117 45% 32 0 0% 20 0 0% 26 0 0% 12 0 0% 3 0 0%
Mastigamoeba balamuthi L23799 350 205 59% 37 27 73% 11 0 0% 15 0 0% 23 12 52% 54 0 0%
Microgemma sp. AJ252952 250 129 52% 34 3 9% 21 0 0% 22 0 0% 14 0 0% 2 0 0%
Microsporidium 57864 U90885 268 90 34% 27 4 15% 30 0 0% 23 0 0% 4 0 0% 3 0 0%
Mus musculus X00686 352 150 43% 23 4 17% 23 0 0% 10 0 0% 27 0 0% 13 0 0%
Mytilus edulis L24489 334 176 53% 29 4 14% 22 0 0% 13 0 0% 22 0 0% 13 0 0%
Naegleria gruberi Thesis, Mullican J. 290 58 20% 10 2 20% 28 0 0% 14 0 0% 18 0 0% 30 0 0%
Nemalion helminthoides L26196 342 192 56% 32 4 13% 17 0 0% 16 0 0% 27 0 0% 13 10 77%
Nemalionopsis shawii AF506272 334 146 44% 35 4 11% 10 0 0% 24 0 0% 23 0 0% 13 0 0%
Nosema algerae AF069063 297 114 38% 29 0 0% 25 0 0% 18 0 0% 22 0 0% 3 0 0%
Nosema apis U97150 259 96 37% 25 2 8% 32 0 0% 18 0 0% 7 0 0% 3 0 0%
Nosema necatrix U11051 240 77 32% 27 0 0% 26 0 0% 21 0 0% 5 0 0% 3 0 0%
Okanagana utahensis U06478 353 176 50% 29 4 14% 18 0 0% 13 0 0% 27 0 0% 17 0 0%
Onychodromus quadricornutus X53485 338 120 36% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Ophiopholis aculeata L28056 295 109 37% 29 3 10% 18 0 0% 13 0 0% 22 0 0% 13 0 0%
Oxytricha granulifera AF164122 337 141 42% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Oxytricha longa AF164125 339 176 52% 28 0 0% 19 0 0% 13 6 46% 29 0 0% 13 0 0%
Palmaria palmata Z14142 341 197 58% 32 6 19% 17 0 0% 16 0 0% 28 0 0% 13 0 0%
Paraurostyla weissei AF164127 339 176 52% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Paruroleptus lepisma AF164132 338 148 44% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Paulinella chromatophora X81811 344 168 49% 29 3 10% 21 0 0% 13 0 0% 22 0 0% 14 0 0%
Placopecten magellanicus X53899 329 126 38% 31 0 0% 20 0 0% 13 0 0% 22 0 0% 13 0 0%
Plasmodium falciparum (A gene) M19172 359 205 57% 49 22 45% 15 0 0% 25 0 0% 17 0 0% 38 6 16%
Plasmodium falciparum (S gene) M19173 344 144 42% 54 6 11% 11 0 0% 25 0 0% 23 0 0% 35 0 0%
Plasmodium vivax (A gene) U07367 346 193 56% 47 18 38% 18 0 0% 22 0 0% 17 0 0% 38 6 16%
Plasmodium vivax (O gene) U93095 331 129 39% 66 47 71% 24 10 42% 17 0 0% 30 7 23% 37 0 0%
Plasmodium vivax (S gene) U07368 349 167 48% 49 7 14% 25 0 0% 20 0 0% 27 0 0% 39 0 0%
Pleistophora hippoglossoideos AJ252953 264 92 35% 36 4 11% 20 0 0% 25 0 0% 13 0 0% 3 0 0%
Pleistophora sp. U10342 244 102 42% 24 7 29% 30 0 0% 28 0 0% 0 0 0% 3 0 0%
Pleurotricha lanceolota AF164128 338 128 38% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Plocamiocolax pulvinata U09618 347 147 42% 32 4 13% 17 0 0% 15 0 0% 29 0 0% 13 0 0%
Polydispyrenia simulii AJ252960 238 89 37% 25 0 0% 27 4 15% 20 0 0% 20 0 0% 3 0 0%
Porphyra miniata NF AF175540 338 97 29% 31 5 16% 20 0 0% 14 0 0% 25 0 0% 16 0 0%
Porphyridium aerugineum L27635 338 156 46% 30 3 10% 18 0 0% 14 0 0% 29 0 0% 13 0 0%
Reticulitermes flavipes NPA 347 186 54% 28 8 29% 18 0 0% 15 0 0% 23 0 0% 16 0 0%
Rhodella maculata U21217 332 145 44% 31 5 16% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Rhodochaete parvula AF139462 340 153 45% 34 0 0% 18 0 0% 14 0 0% 27 0 0% 3 0 0%
Rhodogorgon carriebowensis AF006089 360 169 47% 33 4 12% 12 0 0% 20 0 0% 22 0 0% 20 0 0%
Rhodymenia leptophylla U09621 343 172 50% 32 4 13% 16 0 0% 17 0 0% 28 0 0% 13 0 0%
Saccharomyces cerevisiae U53879 347 183 53% 31 0 0% 18 0 0% 14 0 0% 28 0 0% 13 0 0%
Spraguea lophii AF033197 248 100 40% 35 1 3% 21 0 0% 23 0 0% 15 0 0% 3 0 0%
Staurastrum sp. M752 X74752 334 154 46% 34 6 18% 19 0 0% 13 0 0% 22 0 0% 13 0 0%
Strongylocentrotus purpuratus L28055 296 127 43% 31 0 0% 15 0 0% 13 0 0% 22 0 0% 13 0 0%
Stylonychia lemnae AF164124 340 148 44% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Stylonychia mytilus AF164123 339 156 46% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Thalassiosira eccentrica X85396 342 161 47% 31 3 10% 19 0 0% 13 0 0% 22 6 27% 12 0 0%
Thelohania solenopsae AF031538 287 81 28% 27 0 0% 27 0 0% 18 0 0% 22 0 0% 3 0 0%
Thelohania sp. AF031537 207 67 32% 31 0 0% 15 0 0% 3 0 0% 0 0 0% 0 0 0%
Thorea hispida AF506273 334 152 46% 34 4 12% 3 0 0% 29 0 0% 15 0 0% 22 8 36%
Thorea violacea AF026042 367 165 45% 40 17 43% 20 0 0% 19 0 0% 16 0 0% 36 0 0%
Thorea violacea AF506274 333 187 56% 35 4 11% 3 0 0% 29 0 0% 15 0 0% 22 0 0%
Toxoplasma gondii (P) X75453 310 153 49% 28 1 4% 19 0 0% 15 0 0% 27 0 0% 13 0 0%
Trachipleistophora hominis AJ002605 259 119 46% 35 0 0% 20 0 0% 24 0 0% 14 0 0% 3 0 0%
Tritrichomonas foetus M81842 297 142 48% 30 14 47% 25 0 0% 16 0 0% 25 0 0% 4 0 0%
Uroleptus gallina AF164130 339 178 53% 28 0 0% 19 0 0% 13 6 46% 29 0 0% 13 0 0%
Uroleptus pisces AF164131 339 177 52% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 0 0%
Urostyla grandis AF164129 335 165 49% 28 0 0% 19 0 0% 13 0 0% 29 0 0% 13 10 77%
Vairimorpha necatrix Y00266 M24612 252 84 33% 27 0 0% 31 0 0% 20 0 0% 5 0 0% 3 0 0%
Vairimorpha sp. Argentina AF031539 228 78 34% 27 0 0% 27 0 0% 9 0 0% 12 0 0% 0 0 0%
Vavraia culicis AJ252961 258 137 53% 34 12 35% 21 0 0% 25 0 0% 13 0 0% 3 0 0%
Visvesvaria acridophagus AF024658 302 156 52% 29 0 0% 26 0 0% 18 0 0% 21 0 0% 3 0 0%
Weiseria palustris AF132544 275 115 42% 25 0 0% 27 0 0% 19 0 0% 20 0 0% 3 0 0%
Xenopus laevis X04025 332 131 39% 27 4 15% 21 0 0% 15 0 0% 22 0 0% 12 0 0%
  1. C, Number of comparative, canonical base-pairs (G-C,C-G,A-U,U-A,G-U,U-G); P, Number of base-pairs predicted in the MFold 3.1 optimal structure prediction that match comparative, canonical base-pairs; A, Accuracy of base-pair predictions in the MFold 3.1 optimal structure prediction, accuracy is calculated by dividing the number of correctly predicted Mfold base pairs by the number of canoncial, comparative base pairs within the RNA Contact Distance category.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.